[med-svn] [r-cran-ape] branch master updated (f51147b -> e208e5b)

[Dylan Aïssi]

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bob.dybian-guest pushed a change to branch master
in repository r-cran-ape.

      from  f51147b   Add debian/control Suggests field
       new  8ab7815   Imported Upstream version 3.1-2
       new  9ad91d1   Merge tag 'upstream/3.1-2'
       new  e208e5b   Bump changelog version

The 3 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 COPYING                    | 340 +++++++++++++++++++++++++++++++++++++++++++++
 DESCRIPTION                |   8 +-
 MD5                        |  43 +++---
 NEWS                       |  46 ++++++
 R/CDF.birth.death.R        |   4 +-
 R/DNA.R                    |   6 +-
 R/SlowinskiGuyer.R         |   1 -
 R/ace.R                    |  44 ++++--
 R/all.equal.phylo.R        |  12 +-
 R/chronos.R                |  11 +-
 R/cophyloplot.R            |  26 ++--
 R/dist.topo.R              |   4 +-
 R/plot.phylo.R             | 194 +++++++++++++++-----------
 R/read.GenBank.R           |   6 +-
 R/read.nexus.R             |  42 +++---
 build/vignette.rds         | Bin 192 -> 192 bytes
 data/hivtree.newick.rda    | Bin 2189 -> 2189 bytes
 data/landplants.newick.rda | Bin 574 -> 575 bytes
 data/opsin.newick.rda      | Bin 445 -> 445 bytes
 debian/changelog           |   3 +-
 inst/doc/MoranI.pdf        | Bin 126448 -> 256525 bytes
 man/ace.Rd                 |  39 +++++-
 man/plot.phylo.Rd          |  17 +--
 src/bionjs.c               |  21 ++-
 24 files changed, 678 insertions(+), 189 deletions(-)
 create mode 100644 COPYING

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