[med-svn] [r-cran-ape] branch upstream updated (06eccc8 -> 8ab7815)

[Dylan Aïssi]

This is an automated email from the git hooks/post-receive script.

bob.dybian-guest pushed a change to branch upstream
in repository r-cran-ape.

      from  06eccc8   Imported Upstream version 3.1-1
       new  8ab7815   Imported Upstream version 3.1-2

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 COPYING                    | 340 +++++++++++++++++++++++++++++++++++++++++++++
 DESCRIPTION                |   8 +-
 MD5                        |  43 +++---
 NEWS                       |  46 ++++++
 R/CDF.birth.death.R        |   4 +-
 R/DNA.R                    |   6 +-
 R/SlowinskiGuyer.R         |   1 -
 R/ace.R                    |  44 ++++--
 R/all.equal.phylo.R        |  12 +-
 R/chronos.R                |  11 +-
 R/cophyloplot.R            |  26 ++--
 R/dist.topo.R              |   4 +-
 R/plot.phylo.R             | 194 +++++++++++++++-----------
 R/read.GenBank.R           |   6 +-
 R/read.nexus.R             |  42 +++---
 build/vignette.rds         | Bin 192 -> 192 bytes
 data/hivtree.newick.rda    | Bin 2189 -> 2189 bytes
 data/landplants.newick.rda | Bin 574 -> 575 bytes
 data/opsin.newick.rda      | Bin 445 -> 445 bytes
 inst/doc/MoranI.pdf        | Bin 126448 -> 256525 bytes
 man/ace.Rd                 |  39 +++++-
 man/plot.phylo.Rd          |  17 +--
 src/bionjs.c               |  21 ++-
 23 files changed, 676 insertions(+), 188 deletions(-)
 create mode 100644 COPYING

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/r-cran-ape.git