[med-svn] [fastaq] branch master updated (08d3719 -> 86db77e)

[Jorge Soares]

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jssoares-guest pushed a change to branch master
in repository fastaq.

      from  08d3719   changed UNRELEASED to experimental
       new  86db77e   removed .pc directory from debian package

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 .pc/.quilt_patches                                 |  1 -
 .pc/.quilt_series                                  |  1 -
 .pc/.version                                       |  1 -
 .pc/applied-patches                                |  1 -
 .../.timestamp                                     |  0
 .../scripts/fastaq_capillary_to_pairs              | 12 ---
 .../scripts/fastaq_chunker                         | 21 -----
 .../scripts/fastaq_count_sequences                 | 11 ---
 .../scripts/fastaq_deinterleave                    | 14 ----
 .../scripts/fastaq_enumerate_names                 | 19 -----
 .../scripts/fastaq_expand_nucleotides              | 15 ----
 .../scripts/fastaq_extend_gaps                     | 13 ---
 .../scripts/fastaq_fasta_to_fastq                  | 13 ---
 .../scripts/fastaq_filter                          | 24 ------
 .../scripts/fastaq_get_ids                         | 12 ---
 .../scripts/fastaq_get_seq_flanking_gaps           | 14 ----
 .../scripts/fastaq_insert_or_delete_bases          | 94 ----------------------
 .../scripts/fastaq_interleave                      | 13 ---
 .../scripts/fastaq_long_read_simulate              | 50 ------------
 .../scripts/fastaq_make_random_contigs             | 25 ------
 .../scripts/fastaq_merge                           | 18 -----
 .../scripts/fastaq_replace_bases                   | 14 ----
 .../scripts/fastaq_reverse_complement              | 12 ---
 .../scripts/fastaq_scaffolds_to_contigs            | 13 ---
 .../scripts/fastaq_search_for_seq                  | 13 ---
 .../scripts/fastaq_sequence_trim                   | 25 ------
 .../scripts/fastaq_split_by_base_count             | 15 ----
 .../scripts/fastaq_strip_illumina_suffix           | 12 ---
 .../scripts/fastaq_to_fake_qual                    | 18 -----
 .../scripts/fastaq_to_fasta                        | 19 -----
 .../scripts/fastaq_to_mira_xml                     | 12 ---
 .../scripts/fastaq_to_orfs_gff                     | 13 ---
 .../scripts/fastaq_to_perfect_reads                | 86 --------------------
 .../scripts/fastaq_to_random_subset                | 36 ---------
 .../scripts/fastaq_to_tiling_bam                   | 79 ------------------
 .../scripts/fastaq_to_unique_by_id                 | 12 ---
 .../scripts/fastaq_translate                       | 13 ---
 .../scripts/fastaq_trim_Ns_at_end                  | 12 ---
 .../scripts/fastaq_trim_ends                       | 14 ----
 39 files changed, 790 deletions(-)
 delete mode 100644 .pc/.quilt_patches
 delete mode 100644 .pc/.quilt_series
 delete mode 100644 .pc/.version
 delete mode 100644 .pc/applied-patches
 delete mode 100644 .pc/delay-import-statements-for-manpage-creation.patch/.timestamp
 delete mode 100755 .pc/delay-import-statements-for-manpage-creation.patch/scripts/fastaq_capillary_to_pairs
 delete mode 100755 .pc/delay-import-statements-for-manpage-creation.patch/scripts/fastaq_chunker
 delete mode 100755 .pc/delay-import-statements-for-manpage-creation.patch/scripts/fastaq_count_sequences
 delete mode 100755 .pc/delay-import-statements-for-manpage-creation.patch/scripts/fastaq_deinterleave
 delete mode 100755 .pc/delay-import-statements-for-manpage-creation.patch/scripts/fastaq_enumerate_names
 delete mode 100755 .pc/delay-import-statements-for-manpage-creation.patch/scripts/fastaq_expand_nucleotides
 delete mode 100755 .pc/delay-import-statements-for-manpage-creation.patch/scripts/fastaq_extend_gaps
 delete mode 100755 .pc/delay-import-statements-for-manpage-creation.patch/scripts/fastaq_fasta_to_fastq
 delete mode 100755 .pc/delay-import-statements-for-manpage-creation.patch/scripts/fastaq_filter
 delete mode 100755 .pc/delay-import-statements-for-manpage-creation.patch/scripts/fastaq_get_ids
 delete mode 100755 .pc/delay-import-statements-for-manpage-creation.patch/scripts/fastaq_get_seq_flanking_gaps
 delete mode 100755 .pc/delay-import-statements-for-manpage-creation.patch/scripts/fastaq_insert_or_delete_bases
 delete mode 100755 .pc/delay-import-statements-for-manpage-creation.patch/scripts/fastaq_interleave
 delete mode 100755 .pc/delay-import-statements-for-manpage-creation.patch/scripts/fastaq_long_read_simulate
 delete mode 100755 .pc/delay-import-statements-for-manpage-creation.patch/scripts/fastaq_make_random_contigs
 delete mode 100755 .pc/delay-import-statements-for-manpage-creation.patch/scripts/fastaq_merge
 delete mode 100755 .pc/delay-import-statements-for-manpage-creation.patch/scripts/fastaq_replace_bases
 delete mode 100755 .pc/delay-import-statements-for-manpage-creation.patch/scripts/fastaq_reverse_complement
 delete mode 100755 .pc/delay-import-statements-for-manpage-creation.patch/scripts/fastaq_scaffolds_to_contigs
 delete mode 100755 .pc/delay-import-statements-for-manpage-creation.patch/scripts/fastaq_search_for_seq
 delete mode 100755 .pc/delay-import-statements-for-manpage-creation.patch/scripts/fastaq_sequence_trim
 delete mode 100755 .pc/delay-import-statements-for-manpage-creation.patch/scripts/fastaq_split_by_base_count
 delete mode 100755 .pc/delay-import-statements-for-manpage-creation.patch/scripts/fastaq_strip_illumina_suffix
 delete mode 100755 .pc/delay-import-statements-for-manpage-creation.patch/scripts/fastaq_to_fake_qual
 delete mode 100755 .pc/delay-import-statements-for-manpage-creation.patch/scripts/fastaq_to_fasta
 delete mode 100755 .pc/delay-import-statements-for-manpage-creation.patch/scripts/fastaq_to_mira_xml
 delete mode 100755 .pc/delay-import-statements-for-manpage-creation.patch/scripts/fastaq_to_orfs_gff
 delete mode 100755 .pc/delay-import-statements-for-manpage-creation.patch/scripts/fastaq_to_perfect_reads
 delete mode 100755 .pc/delay-import-statements-for-manpage-creation.patch/scripts/fastaq_to_random_subset
 delete mode 100755 .pc/delay-import-statements-for-manpage-creation.patch/scripts/fastaq_to_tiling_bam
 delete mode 100755 .pc/delay-import-statements-for-manpage-creation.patch/scripts/fastaq_to_unique_by_id
 delete mode 100755 .pc/delay-import-statements-for-manpage-creation.patch/scripts/fastaq_translate
 delete mode 100755 .pc/delay-import-statements-for-manpage-creation.patch/scripts/fastaq_trim_Ns_at_end
 delete mode 100755 .pc/delay-import-statements-for-manpage-creation.patch/scripts/fastaq_trim_ends

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