[med-svn] [htslib] branch debian/unstable updated (15eac2b -> 9750123)

[Charles Plessy]

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plessy pushed a change to branch debian/unstable
in repository htslib.

      from  15eac2b   htslib (1.1-1) unstable; urgency=medium
      adds  f5aeebb   bgzf_open(..,"g") for compressed gzip output, as opposed to BGZF
      adds  f2080d5   Merge version number bump from master
       new  5b98adc   Added regidx API which should replace bcf_sr_regions at some point
       new  f4b4b61   Clean after regidx init failure; fixed build dependencies
       new  d27ae83   Fix in bcf regions which in some situations would skip first
       new  d2cb7ba   regidx: simple file format autodetection
       new  c116e11   add new test-regidx binary to .gitignore
       new  db774cc   Merge pull request #136 from mcshane/feature/ignore_test-regidx
       new  14a4a81   Return type of bgzf_getc is int, not char
       new  56d50b2   regidx: use size_t, not ssize_t
       new  ac4c98a   Merge branch 'develop' into debian/unstable
       new  9750123   Current changelog; not sure to upload or not.

The 10 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 .gitignore             |   1 +
 Makefile               |  12 +-
 bgzf.c                 |  45 +++----
 debian/changelog       |  10 ++
 faidx.c                |  10 +-
 htslib.mk              |   1 +
 htslib/bgzf.h          |   7 +-
 htslib/khash_str2int.h |   9 ++
 htslib/regidx.h        | 140 +++++++++++++++++++++
 htslib_vars.mk         |   1 +
 regidx.c               | 322 +++++++++++++++++++++++++++++++++++++++++++++++++
 synced_bcf_reader.c    |   6 +-
 test/test-regidx.c     | 116 ++++++++++++++++++
 13 files changed, 648 insertions(+), 32 deletions(-)
 create mode 100644 htslib/regidx.h
 create mode 100644 regidx.c
 create mode 100644 test/test-regidx.c

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