[med-svn] [jellyfish] 03/03: Fix syntax errors in yaggo files

[Andreas Tille]

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tille pushed a commit to branch master
in repository jellyfish.

commit 0cc323f00a76f2cb27c10389031613572ac685fa
Author: Andreas Tille <tille at debian.org>
Date:   Mon Oct 6 13:32:23 2014 +0200

    Fix syntax errors in yaggo files
---
 debian/patches/fix_yaggo_syntax.patch | 40 +++++++++++++++++++++++++++++++++++
 debian/patches/series                 |  1 +
 2 files changed, 41 insertions(+)

diff --git a/debian/patches/fix_yaggo_syntax.patch b/debian/patches/fix_yaggo_syntax.patch
new file mode 100644
index 0000000..d60f9d8
--- /dev/null
+++ b/debian/patches/fix_yaggo_syntax.patch
@@ -0,0 +1,40 @@
+Author: Andreas Tille <tille at debian.org>
+Last-Update: Sat, 04 Oct 2014 19:06:43 +0200
+Description: Fix syntax errors in yaggo files
+
+--- a/sub_commands/info_main_cmdline.yaggo
++++ b/sub_commands/info_main_cmdline.yaggo
+@@ -1,11 +1,11 @@
+ purpose "Display information about a jellyfish file"
+ package "jellyfish info"
+ 
+-description <<EOS
++description "
+ This command shows some information about how this jellyfish output
+ file was created. Without any argument, it displays the command line
+ used, when and where it was run.
+-EOS
++"
+ 
+ option("s", "skip") {
+   description "Skip header and dump remainder of file"
+--- a/sub_commands/mem_main_cmdline.yaggo
++++ b/sub_commands/mem_main_cmdline.yaggo
+@@ -1,7 +1,7 @@
+ purpose "Give memory usage information"
+ package "jellyfish mem"
+ 
+-description <<EOS
++description "
+ The mem subcommand gives some information about the memory usage of
+ Jellyfish when counting mers. If one replace 'count' by 'mem' in the
+ command line, it displays the amount of memory needed. All the
+@@ -15,7 +15,7 @@ that amount of memory is returned.
+ The memory usage information only takes into account the hash to store
+ the k-mers, not various buffers (e.g. in parsing the input files). But
+ typically those will be small in comparison to the hash.
+-EOS
++"
+ 
+ option("mer-len", "m") {
+   description "Length of mer"
diff --git a/debian/patches/series b/debian/patches/series
new file mode 100644
index 0000000..a640172
--- /dev/null
+++ b/debian/patches/series
@@ -0,0 +1 @@
+fix_yaggo_syntax.patch

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