[med-svn] r18239 - trunk/packages/beast-mcmc/trunk/debian/bin

[Andreas Tille]

Author: tille
Date: 2014-10-07 15:02:49 +0000 (Tue, 07 Oct 2014)
New Revision: 18239

Modified:
   trunk/packages/beast-mcmc/trunk/debian/bin/beast-mcmc
Log:
Help finding libhmsbeagle-jni


Modified: trunk/packages/beast-mcmc/trunk/debian/bin/beast-mcmc
===================================================================
--- trunk/packages/beast-mcmc/trunk/debian/bin/beast-mcmc	2014-10-07 13:31:35 UTC (rev 18238)
+++ trunk/packages/beast-mcmc/trunk/debian/bin/beast-mcmc	2014-10-07 15:02:49 UTC (rev 18239)
@@ -8,8 +8,21 @@
 # explicitely because it is set in manifest - however, this
 # does not work
 
+# Remark: Adding /usr/lib/$(dpkg-architecture -qDEB_BUILD_MULTIARCH)/jni
+#         to java.library.path helped solving the following problem:
+#  $ beast-mcmc -beagle_info >/dev/null
+#  Failed to load BEAGLE library: no hmsbeagle-jni in java.library.path
+#  Failed to load BEAGLE library: no hmsbeagle-jni in java.library.path
+#  Failed to load BEAGLE library: no hmsbeagle-jni in java.library.path
+#
+# Using the setting above this turns into
+#  BEAGLE resources available:
+#  0 : CPU
+#      Flags: PRECISION_SINGLE PRECISION_DOUBLE COMPUTATION_SYNCH EIGEN_REAL EIGEN_COMPLEX SCALING_MANUAL SCALING_AUTO SCALING_ALWAYS SCALERS_RAW SCALERS_LOG VECTOR_SSE VECTOR_NONE THREADING_NONE PROCESSOR_CPU FRAMEWORK_CPU
+
+
 BEAST_LIB="/usr/share/beast-mcmc"
 DEBJAR="/usr/share/java"
-java -Xms64m -Xmx${MAXMEM}m -Djava.library.path="$BEAST_LIB:/usr/lib" \
+java -Xms64m -Xmx${MAXMEM}m -Djava.library.path="$BEAST_LIB:/usr/lib:/usr/lib/$(dpkg-architecture -qDEB_BUILD_MULTIARCH)/jni" \
    -classpath "${CLASSPATH}:${DEBJAR}/jebl.jar:${DEBJAR}/jam.jar:${DEBJAR}/jdom1.jar:${DEBJAR}/colt.jar:${DEBJAR}/commons-math.jar:${DEBJAR}/treeview.jar:${BEAST_LIB}/beast.jar:$BEAST_LIB/beast-beagle.jar" \
    dr.app.beast.BeastMain $*