[med-svn] [fastaq] branch master updated (deeba8e -> 037b3fb)

[Jorge Soares]

This is an automated email from the git hooks/post-receive script.

jssoares-guest pushed a change to branch master
in repository fastaq.

      from  deeba8e   Adding new source
       new  037b3fb   removed src folder as this is now scripts

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 src/fastaq_capillary_to_pairs     | 12 -----
 src/fastaq_chunker                | 21 ---------
 src/fastaq_count_sequences        | 11 -----
 src/fastaq_deinterleave           | 14 ------
 src/fastaq_enumerate_names        | 19 --------
 src/fastaq_extend_gaps            | 13 ------
 src/fastaq_fasta_to_fastq         | 13 ------
 src/fastaq_filter                 | 24 ----------
 src/fastaq_get_ids                | 12 -----
 src/fastaq_get_seq_flanking_gaps  | 14 ------
 src/fastaq_insert_or_delete_bases | 94 ---------------------------------------
 src/fastaq_interleave             | 13 ------
 src/fastaq_make_random_contigs    | 25 -----------
 src/fastaq_replace_bases          | 14 ------
 src/fastaq_reverse_complement     | 12 -----
 src/fastaq_scaffolds_to_contigs   | 13 ------
 src/fastaq_search_for_seq         | 13 ------
 src/fastaq_split_by_base_count    | 15 -------
 src/fastaq_strip_illumina_suffix  | 12 -----
 src/fastaq_to_fasta               | 19 --------
 src/fastaq_to_mira_xml            | 12 -----
 src/fastaq_to_perfect_reads       | 86 -----------------------------------
 src/fastaq_to_quasr_primers_file  | 12 -----
 src/fastaq_to_random_subset       | 36 ---------------
 src/fastaq_to_tiling_bam          | 79 --------------------------------
 src/fastaq_to_unique_by_id        | 12 -----
 src/fastaq_translate              | 13 ------
 src/fastaq_trim_Ns_at_end         | 12 -----
 src/fastaq_trim_ends              | 14 ------
 29 files changed, 659 deletions(-)
 delete mode 100755 src/fastaq_capillary_to_pairs
 delete mode 100755 src/fastaq_chunker
 delete mode 100755 src/fastaq_count_sequences
 delete mode 100755 src/fastaq_deinterleave
 delete mode 100755 src/fastaq_enumerate_names
 delete mode 100755 src/fastaq_extend_gaps
 delete mode 100755 src/fastaq_fasta_to_fastq
 delete mode 100755 src/fastaq_filter
 delete mode 100755 src/fastaq_get_ids
 delete mode 100755 src/fastaq_get_seq_flanking_gaps
 delete mode 100755 src/fastaq_insert_or_delete_bases
 delete mode 100755 src/fastaq_interleave
 delete mode 100755 src/fastaq_make_random_contigs
 delete mode 100755 src/fastaq_replace_bases
 delete mode 100755 src/fastaq_reverse_complement
 delete mode 100755 src/fastaq_scaffolds_to_contigs
 delete mode 100755 src/fastaq_search_for_seq
 delete mode 100755 src/fastaq_split_by_base_count
 delete mode 100755 src/fastaq_strip_illumina_suffix
 delete mode 100755 src/fastaq_to_fasta
 delete mode 100755 src/fastaq_to_mira_xml
 delete mode 100755 src/fastaq_to_perfect_reads
 delete mode 100755 src/fastaq_to_quasr_primers_file
 delete mode 100755 src/fastaq_to_random_subset
 delete mode 100755 src/fastaq_to_tiling_bam
 delete mode 100755 src/fastaq_to_unique_by_id
 delete mode 100755 src/fastaq_translate
 delete mode 100755 src/fastaq_trim_Ns_at_end
 delete mode 100755 src/fastaq_trim_ends

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/fastaq.git