[med-svn] [relion] 04/05: Merge tag 'upstream/1.3'
Roland Fehrenbacher
rfehren-guest at moszumanska.debian.org
Thu Oct 9 19:53:37 UTC 2014
This is an automated email from the git hooks/post-receive script.
rfehren-guest pushed a commit to branch master
in repository relion.
commit c59d408208182852610a5ceac5aeff62f8cada7b
Merge: 473da08 1c61897
Author: Roland Fehrenbacher <rf at q-leap.de>
Date: Tue Jul 29 14:13:17 2014 +0200
Merge tag 'upstream/1.3'
Upstream version 1.3
AUTHORS | 8 +
COPYING | 340 +
ChangeLog | 0
INSTALL | 268 +
INSTALL.sh | 80 +
Makefile.am | 316 +
Makefile.in | 1601 +++
NEWS | 0
README | 7 +
aclocal.m4 | 8935 +++++++++++++++++
autogen.sh | 8 +
compile | 143 +
config.guess | 1501 +++
config.h.in | 65 +
config.sub | 1705 ++++
configure | 18370 +++++++++++++++++++++++++++++++++++
configure.ac | 84 +
depcomp | 630 ++
external/fftw-3.2.2.tar.gz | Bin 0 -> 3495117 bytes
external/fltk-1.3.0.tar.gz | Bin 0 -> 4111820 bytes
install-sh | 520 +
ltmain.sh | 8406 ++++++++++++++++
missing | 376 +
relion.h | 55 +
relion.pc.in | 11 +
scripts/qsub.csh | 12 +
scripts/star_datablock_ctfdat | 24 +
scripts/star_datablock_singlefiles | 29 +
scripts/star_datablock_stack | 29 +
scripts/star_loopheader | 31 +
scripts/star_plottable | 29 +
scripts/star_printtable | 28 +
src/Healpix_2.15a/arr.h | 447 +
src/Healpix_2.15a/cxxutils.cc | 297 +
src/Healpix_2.15a/cxxutils.h | 268 +
src/Healpix_2.15a/datatypes.h | 224 +
src/Healpix_2.15a/geom_utils.h | 64 +
src/Healpix_2.15a/healpix_base.cc | 784 ++
src/Healpix_2.15a/healpix_base.h | 285 +
src/Healpix_2.15a/lsconstants.h | 112 +
src/Healpix_2.15a/message_error.h | 96 +
src/Healpix_2.15a/openmp_support.h | 86 +
src/Healpix_2.15a/pointing.h | 115 +
src/Healpix_2.15a/vec3.h | 125 +
src/apps/autopick.cpp | 46 +
src/apps/autopick_mpi.cpp | 46 +
src/apps/display.cpp | 61 +
src/apps/find_tiltpairs.cpp | 503 +
src/apps/image_handler.cpp | 465 +
src/apps/maingui.cpp | 66 +
src/apps/manualpick.cpp | 54 +
src/apps/mask_create.cpp | 170 +
src/apps/particle_polish.cpp | 46 +
src/apps/particle_polish_mpi.cpp | 46 +
src/apps/particle_sort.cpp | 49 +
src/apps/particle_sort_mpi.cpp | 46 +
src/apps/postprocess.cpp | 46 +
src/apps/preprocess.cpp | 48 +
src/apps/preprocess_mpi.cpp | 48 +
src/apps/project.cpp | 329 +
src/apps/reconstruct.cpp | 449 +
src/apps/refine.cpp | 51 +
src/apps/refine_mpi.cpp | 57 +
src/apps/run_ctffind.cpp | 47 +
src/apps/run_ctffind_mpi.cpp | 47 +
src/apps/stack_create.cpp | 216 +
src/args.cpp | 364 +
src/args.h | 208 +
src/assembly.cpp | 420 +
src/assembly.h | 253 +
src/autopicker.cpp | 870 ++
src/autopicker.h | 150 +
src/autopicker_mpi.cpp | 70 +
src/autopicker_mpi.h | 37 +
src/backprojector.cpp | 1323 +++
src/backprojector.h | 276 +
src/complex.cpp | 164 +
src/complex.h | 84 +
src/ctf.cpp | 203 +
src/ctf.h | 217 +
src/ctffind_runner.cpp | 307 +
src/ctffind_runner.h | 115 +
src/ctffind_runner_mpi.cpp | 78 +
src/ctffind_runner_mpi.h | 50 +
src/displayer.cpp | 1965 ++++
src/displayer.h | 490 +
src/error.cpp | 63 +
src/error.h | 90 +
src/euler.cpp | 392 +
src/euler.h | 311 +
src/exp_model.cpp | 1122 +++
src/exp_model.h | 438 +
src/fftw.cpp | 1149 +++
src/fftw.h | 841 ++
src/filename.cpp | 434 +
src/filename.h | 520 +
src/funcs.cpp | 733 ++
src/funcs.h | 499 +
src/gcc_version.h | 67 +
src/gui_entries.cpp | 655 ++
src/gui_entries.h | 418 +
src/gui_jobwindow.cpp | 3132 ++++++
src/gui_jobwindow.h | 708 ++
src/gui_mainwindow.cpp | 583 ++
src/gui_mainwindow.h | 134 +
src/healpix_sampling.cpp | 1964 ++++
src/healpix_sampling.h | 362 +
src/image.cpp | 199 +
src/image.h | 1329 +++
src/macros.h | 391 +
src/manualpicker.cpp | 510 +
src/manualpicker.h | 124 +
src/mask.cpp | 332 +
src/mask.h | 47 +
src/matrix1d.cpp | 71 +
src/matrix1d.h | 1288 +++
src/matrix2d.cpp | 36 +
src/matrix2d.h | 1492 +++
src/memory.cpp | 56 +
src/memory.h | 189 +
src/metadata_container.cpp | 486 +
src/metadata_container.h | 174 +
src/metadata_label.cpp | 140 +
src/metadata_label.h | 644 ++
src/metadata_table.cpp | 801 ++
src/metadata_table.h | 399 +
src/ml_model.cpp | 1272 +++
src/ml_model.h | 293 +
src/ml_optimiser.cpp | 5784 +++++++++++
src/ml_optimiser.h | 631 ++
src/ml_optimiser_mpi.cpp | 1680 ++++
src/ml_optimiser_mpi.h | 139 +
src/mpi.cpp | 250 +
src/mpi.h | 91 +
src/multidim_array.cpp | 77 +
src/multidim_array.h | 4261 ++++++++
src/numerical_recipes.cpp | 1340 +++
src/numerical_recipes.h | 273 +
src/parallel.cpp | 339 +
src/parallel.h | 401 +
src/particle_polisher.cpp | 1616 +++
src/particle_polisher.h | 225 +
src/particle_polisher_mpi.cpp | 428 +
src/particle_polisher_mpi.h | 67 +
src/particle_sorter.cpp | 693 ++
src/particle_sorter.h | 126 +
src/particle_sorter_mpi.cpp | 91 +
src/particle_sorter_mpi.h | 51 +
src/postprocessing.cpp | 647 ++
src/postprocessing.h | 151 +
src/preprocessing.cpp | 849 ++
src/preprocessing.h | 167 +
src/preprocessing_mpi.cpp | 107 +
src/preprocessing_mpi.h | 50 +
src/projector.cpp | 478 +
src/projector.h | 230 +
src/rwIMAGIC.h | 343 +
src/rwMRC.h | 472 +
src/rwSPIDER.h | 427 +
src/strings.cpp | 546 ++
src/strings.h | 404 +
src/symmetries.cpp | 921 ++
src/symmetries.h | 272 +
src/tabfuncs.cpp | 122 +
src/tabfuncs.h | 154 +
src/time.cpp | 239 +
src/time.h | 284 +
src/transformations.cpp | 223 +
src/transformations.h | 960 ++
169 files changed, 108591 insertions(+)
--
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