Author: tille
Date: 2014-10-16 11:08:35 +0000 (Thu, 16 Oct 2014)
New Revision: 18309
Modified:
trunk/packages/R/r-bioc-000-dependency-scheme/2.12/BioC-dependency-tree.ditaa
trunk/packages/R/r-bioc-000-dependency-scheme/3.0/BioC_3.0-dependency-tree.ditaa
Log:
Add further packages into dependency graph
Modified: trunk/packages/R/r-bioc-000-dependency-scheme/2.12/BioC-dependency-tree.ditaa
===================================================================
--- trunk/packages/R/r-bioc-000-dependency-scheme/2.12/BioC-dependency-tree.ditaa 2014-10-16 10:20:00 UTC (rev 18308)
+++ trunk/packages/R/r-bioc-000-dependency-scheme/2.12/BioC-dependency-tree.ditaa 2014-10-16 11:08:35 UTC (rev 18309)
@@ -11,43 +11,49 @@
| | | +-------+-----------+ +-----+----+ |
+----------------------------------+ | | | variantannotation |<-+ | bsgenome | |
| | | +-------------------+ | +----------+ |
- | +-----------++ | ^ | ^ |
- | | makecdfenv | | | | | |
- | +------------+ | +--------+--------+ +--+------+-+ |
- | ^ | +-------------------------------------->| genomicfeatures | | rsamtools | |
- | | | | +-----------------+ +-----------+ |
- | | | | ^ ^ ^ ^ |
- | | | | | | | | |
+ | +-----------++ | ^ ^ | ^ |
+ | | makecdfenv | | | : | | |
+ | +------------+ | +--------+--------+ : +--+------+-+ |
+ | ^ | +------------------------------------->| genomicfeatures | : | rsamtools | |
+ | | | | +-----------------+ : +-----------+ |
+ | | | | ^ ^ : ^ ^ |
+ | | | | | | : | | |
| | +-------------------------+ | +-----------------------------------------------------------+ | |
- | +------+---+ | | | | | | |
-+------+-----+ | affy | +--+--+--+---+ +----------+ +---------+ | | | |
-| hypergraph | +----------+ | biostrings | | annotate | | biomart +-----+ | | |
-+------------+ ^ ^ ^ ^ +------------+ +----------+ +---------+ | | |
- ^ | | | | ^ ^ ^ | | |
- | +-----------+ | | +-----------------+ | | | | | |
- | | | | | | | | | | |
- +---+---+ +------+---------+ | | | +-----+---+ +------+--------+ | | | |
- | graph | | preprocesscore | | | | | xvector | | annotationdbi |----+ | | |
- +-------+ +----------------+ | | | +---------+ +---------------+ | | |
- ^ | | | ^ ^ ^ ^ | | |
- | | | | | | | | +---------------+ | |
- | | | | +------------------|-------------+ | | | | |
+ | +------+---+ | | | | | : | |
++------+-----+ | affy | +--+--+--+---+ +----------+ +---------+ | | : | |
+| hypergraph | +----------+ | biostrings | | annotate | | biomart +-----+ | : | |
++------------+ ^ ^ ^ ^ +------------+ +----------+ +---------+ | : | |
+ ^ | | | | ^ ^ ^ | : | |
+ | +-----------+ | | +-----------------+ | | | | : | |
+ | | | | | | | | | : | |
+ +---+---+ +------+---------+ | | | +-----+---+ +------+--------+ | | : | |
+ | graph | | preprocesscore | | | | | xvector | | annotationdbi |----+ | : | |
+ +-------+ +----------------+ | | | +---------+ +---------------+ | : | |
+ ^ | | | ^ ^ ^ ^ | : | |
+ | | | | | | | | +---------------+ : | |
+ | | | | +------------------|-------------+ | | | : | |
| +-------------+ | | | | +-------------+ | | +----------------------------+ |
- | | | | | | | | | | |
- | +------+--------+ +---+-----+ +----+--+-+ +-----+--++ | +------+----+---+ |
- | | biocinstaller | | affyio | | biobase | | iranges | | | genomicranges | |
- | +---------------+ +---------+ +---------+ +---------+ | +---------------+ |
- | ^ ^ | ^ |
- | | | | | |
- +---------------------------------------------+ | +-------------------+ | +---------+ |
- | | | | | |
- | | | +-------+--+---+ +--------------+ |
+ | | | | | | | | | | : |
+ | +------+--------+ +---+-----+ +----+--+-+ +-----+--++ | +------+----+---+ : |
+ | | biocinstaller | | affyio | | biobase | | iranges | | | genomicranges | : |
+ | +---------------+ +---------+ +---------+ +---------+ | +---------------+ : |
+ | ^ ^ | ^ : |
+ | | | | | : |
+ +---------------------------------------------+ | +-------------------+ | +---------+ : |
+ | | | | | : |
+ | | | +-------+--+---+ +--------------+ : |
| | | | genomeinfodb | | biocparallel +--------------------------------------+
- | | | +--------------+ +--------------+
- | | | ^
- | | | |
- | | | +-------------------------------------------------------+
- | | | |
- +--+--+--+---+-+
- | biocgenerics |
- +--------------+
\ No newline at end of file
+ | | | +--------------+ +--------------+ :
+ | | | ^ :
+ | | | | :
+ | | | +-------------------------------------------------------+ :
+ | | | | :
+ +--+--+--+---+-+ +----+-----+
+ | biocgenerics +------------------------------------------------------------------>| snpstats |
+ +--------------+ +----------+
+
+
+
++------------+ +--------+
+| hilbertvis | | qvalue |
++------------+ +--------+
Modified: trunk/packages/R/r-bioc-000-dependency-scheme/3.0/BioC_3.0-dependency-tree.ditaa
===================================================================
--- trunk/packages/R/r-bioc-000-dependency-scheme/3.0/BioC_3.0-dependency-tree.ditaa 2014-10-16 10:20:00 UTC (rev 18308)
+++ trunk/packages/R/r-bioc-000-dependency-scheme/3.0/BioC_3.0-dependency-tree.ditaa 2014-10-16 11:08:35 UTC (rev 18309)
@@ -11,50 +11,57 @@
| | | +-------+-----------+ +-----+----+ |
+----------------------------------+ | | | variantannotation |<-+ | bsgenome | |
| | | +-------------------+ | +----------+ |
- | +-----------++ | ^ | ^ |
- | | makecdfenv | | | | | |
- | +------------+ | +--------+--------+ +--+------+-+ |
- | ^ | +-------------------------------------->| genomicfeatures | | rsamtools | |
- | | | | +-----------------+ +-----------+ |
- | | | | ^ ^ ^ ^ |
- | | | | | | | | |
+ | +-----------++ | ^ ^ | ^ |
+ | | makecdfenv | | | : | | |
+ | +------------+ | +---------+-------+ : +--+------+-+ |
+ | ^ | +------------------------------------->| genomicfeatures | : | rsamtools | |
+ | | | | +-----------------+ : +-----------+ |
+ | | | | ^ ^ : ^ ^ |
+ | | | | | | : | | |
| | +-------------------------+ | +-----------------------------------------------------------+ | |
- | +------+---+ | | | | | | |
-+------+-----+ | affy | +--+--+--+---+ +----------+ +---------+ | | | |
-| hypergraph | +----------+ | biostrings | | annotate | | biomart +-----+ | | |
-+------------+ ^ ^ ^ ^ +------------+ +----------+ +---------+ | | |
- ^ | | | | ^ ^ ^ | | |
- | +-----------+ | | +-----------------+ | | | | | |
- | | | | | | | | | | |
- +---+---+ +------+---------+ | | | +-----+---+ +------+--------+ | | | |
- | graph | | preprocesscore | | | | | xvector | | annotationdbi |----+ | | |
- +-------+ +----------------+ | | | +---------+ +---------------+ | | |
- ^ | | | ^ ^ ^ ^ | | |
- | | | | | | | | +---------------+ | |
- | | | | +------------------|-------------+ | | | | |
+ | +------+---+ | | | | | : | |
++------+-----+ | affy | +--+--+--+---+ +----------+ +---------+ | | : | |
+| hypergraph | +----------+ | biostrings | | annotate | | biomart +-----+ | : | |
++------------+ ^ ^ ^ ^ +------------+ +----------+ +---------+ | : | |
+ ^ | | | | ^ ^ ^ | : | |
+ | +-----------+ | | +-----------------+ | | | | : | |
+ | | | | | | | | | : | |
+ +---+---+ +------+---------+ | | | +-----+---+ +------+--------+ | | : | |
+ | graph | | preprocesscore | | | | | xvector | | annotationdbi |----+ | : | |
+ +-------+ +----------------+ | | | +---------+ +---------------+ | : | |
+ ^ | | | ^ ^ ^ ^ | : | |
+ | | | | | | | | +---------------+ : | |
+ | | | | +------------------|-------------+ | | | : | |
| +-------------+ | | | | +-------------+ | | +----------------------------+ |
- | | | | | | | | | | |
- | | | | | | | | +------+----+---+ |
- | | | | | | | | | genomicranges | |
- | | | | | | | | +---------------+ |
- | | | | | | | | ^ |
- | | | | | | | | | |
- | | | | | | | | +---------+ |
- | | | | | | | | | |
- | +------+--------+ +---+-----+ +----+--+-+ +-----+--++ +-------+--+---+ |
- | | biocinstaller | | affyio | | biobase | | iranges +------>| genomeinfodb | |
- | +---------------+ +---------+ +---------+ +---------+ +--------------+ |
- | ^ ^ ^ |
- | | | | |
- +---------------------------------------------+ | +-------------------+ | |
- | | | | |
- | | | | +--------------+ |
+ | | | | | | | | | | : |
+ | | | | | | | | +------+----+---+ : |
+ | | | | | | | | | genomicranges | : |
+ | | | | | | | | +---------------+ : |
+ | | | | | | | | ^ : |
+ | | | | | | | | | : |
+ | | | | | | | | +---------+ : |
+ | | | | | | | | | : |
+ | +------+--------+ +---+-----+ +----+--+-+ +-----+--++ +-------+--+---+ : |
+ | | biocinstaller | | affyio | | biobase | | iranges +------>| genomeinfodb | : |
+ | +---------------+ +---------+ +---------+ +---------+ +--------------+ : |
+ | ^ ^ ^ : |
+ | | | | : |
+ +---------------------------------------------+ | +-------------------+ | : |
+ | | | | : |
+ | | | | +--------------+ : |
| | | +-------------------------------------+ | biocparallel +--------------------------------------+
- | | | | +--------------+
- | | | | ^
- | | | | |
- | | | | +-------------------------------------------------------+
- | | | | |
- +--+--+--+-+-+-+
- | biocgenerics |
- +--------------+
\ No newline at end of file
+ | | | | +--------------+ :
+ | | | | ^ :
+ | | | | | :
+ | | | | +-------------------------------------------------------+ :
+ | | | | | :
+ +--+--+--+-+-+-+ +----+-----+
+ | biocgenerics +------------------------------------------------------------------>| snpstats |
+ +--------------+ +----------+
+
+
+
+
++------------+ +--------+
+| hilbertvis | | qvalue |
++------------+ +--------+