[med-svn] [gmap] branch upstream updated (91e40ff -> 888c9bb)

[Alex Mestiashvili]

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malex-guest pushed a change to branch upstream
in repository gmap.

      from  91e40ff   Imported Upstream version 2014-10-14
       new  888c9bb   Imported Upstream version 2014-10-15

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
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Summary of changes:
 ChangeLog                                  |  32 +++
 Makefile.in                                |   4 +-
 VERSION                                    |   2 +-
 acinclude.m4                               |   2 +-
 config/ax_ext.m4                           |  54 ++---
 config/{builtin.m4 => builtin-popcount.m4} |  32 ++-
 configure                                  | 304 +++++++++++++++++++++--------
 configure.ac                               |  12 +-
 src/Makefile.am                            |  20 +-
 src/Makefile.in                            |  24 +--
 src/outbuffer.c                            |  23 ++-
 src/shortread.c                            |  62 ++++--
 tests/Makefile.in                          |   4 +-
 util/Makefile.in                           |   4 +-
 14 files changed, 412 insertions(+), 167 deletions(-)
 rename config/{builtin.m4 => builtin-popcount.m4} (57%)

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