[med-svn] r18345 - in trunk/packages/R/r-bioc-biostrings/trunk/debian: . patches

[Andreas Tille]

Author: tille
Date: 2014-10-20 05:02:50 +0000 (Mon, 20 Oct 2014)
New Revision: 18345

Modified:
   trunk/packages/R/r-bioc-biostrings/trunk/debian/changelog
   trunk/packages/R/r-bioc-biostrings/trunk/debian/control
   trunk/packages/R/r-bioc-biostrings/trunk/debian/copyright
   trunk/packages/R/r-bioc-biostrings/trunk/debian/patches/use_debian_packaged_zlib.patch
Log:
New upstream version


Modified: trunk/packages/R/r-bioc-biostrings/trunk/debian/changelog
===================================================================
--- trunk/packages/R/r-bioc-biostrings/trunk/debian/changelog	2014-10-20 04:49:27 UTC (rev 18344)
+++ trunk/packages/R/r-bioc-biostrings/trunk/debian/changelog	2014-10-20 05:02:50 UTC (rev 18345)
@@ -1,3 +1,10 @@
+r-bioc-biostrings (2.34.0-1) experimental; urgency=medium
+
+  * New upstream version
+  * cme fix dpkg-control
+
+ -- Andreas Tille <tille at debian.org>  Mon, 20 Oct 2014 06:46:46 +0200
+
 r-bioc-biostrings (2.32.1-1) unstable; urgency=medium
 
   * New upstream version

Modified: trunk/packages/R/r-bioc-biostrings/trunk/debian/control
===================================================================
--- trunk/packages/R/r-bioc-biostrings/trunk/debian/control	2014-10-20 04:49:27 UTC (rev 18344)
+++ trunk/packages/R/r-bioc-biostrings/trunk/debian/control	2014-10-20 05:02:50 UTC (rev 18345)
@@ -2,13 +2,13 @@
 Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
 Uploaders: Andreas Tille <tille at debian.org>
 Section: gnu-r
+Testsuite: autopkgtest
 Priority: optional
-Testsuite: autopkgtest
 Build-Depends: debhelper (>= 9),
                cdbs,
                r-base-dev,
-               r-bioc-xvector (>= 0.4.0)
-Standards-Version: 3.9.5
+               r-bioc-xvector (>= 0.6.0)
+Standards-Version: 3.9.6
 Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-bioc-biostrings/trunk/
 Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-biostrings/trunk/
 Homepage: http://bioconductor.org/packages/release/bioc/html/Biostrings.html
@@ -18,7 +18,7 @@
 Depends: ${R:Depends},
          ${misc:Depends},
          ${shlibs:Depends},
-         r-bioc-xvector (>= 0.4.0)
+         r-bioc-xvector (>= 0.6.0)
 Description: GNU R string objects representing biological sequences
  Memory efficient string containers, string matching algorithms, and other
  utilities, for fast manipulation of large biological sequences or set of

Modified: trunk/packages/R/r-bioc-biostrings/trunk/debian/copyright
===================================================================
--- trunk/packages/R/r-bioc-biostrings/trunk/debian/copyright	2014-10-20 04:49:27 UTC (rev 18344)
+++ trunk/packages/R/r-bioc-biostrings/trunk/debian/copyright	2014-10-20 05:02:50 UTC (rev 18345)
@@ -4,12 +4,12 @@
 Source: http://bioconductor.org/packages/release/bioc/html/Biostrings.html
 
 Files: *
-Copyright: © 2006-2013 H. Pages, R. Gentleman, P. Aboyoun and S. DebRoy
+Copyright: © 2006-2014 H. Pages, R. Gentleman, P. Aboyoun and S. DebRoy
 License: Artistic-2.0
 
 
 Files: debian/*
-Copyright: 2013 Andreas Tille <tille at debian.org>
+Copyright: 2013-2014 Andreas Tille <tille at debian.org>
 License: Artistic-2.0
 
 License: Artistic-2.0

Modified: trunk/packages/R/r-bioc-biostrings/trunk/debian/patches/use_debian_packaged_zlib.patch
===================================================================
--- trunk/packages/R/r-bioc-biostrings/trunk/debian/patches/use_debian_packaged_zlib.patch	2014-10-20 04:49:27 UTC (rev 18344)
+++ trunk/packages/R/r-bioc-biostrings/trunk/debian/patches/use_debian_packaged_zlib.patch	2014-10-20 05:02:50 UTC (rev 18345)
@@ -6,18 +6,18 @@
 --- a/DESCRIPTION
 +++ b/DESCRIPTION
 @@ -12,7 +12,7 @@ biocViews: SequenceMatching, Genetics, S
- Depends: R (>= 2.8.0), methods, BiocGenerics (>= 0.5.4), IRanges (>=
-         1.21.35), XVector (>= 0.3.6)
+ Depends: R (>= 2.8.0), methods, BiocGenerics (>= 0.11.3), S4Vectors (>=
+         0.2.2), IRanges (>= 1.99.27), XVector (>= 0.5.8)
  Imports: graphics, methods, stats, utils, BiocGenerics, IRanges,
 -        XVector, zlibbioc
 +        XVector
- LinkingTo: IRanges, XVector
+ LinkingTo: S4Vectors, IRanges, XVector
  Enhances: Rmpi
  Suggests: BSgenome (>= 1.13.14), BSgenome.Celegans.UCSC.ce2 (>=
 --- a/NAMESPACE
 +++ b/NAMESPACE
-@@ -19,7 +19,6 @@ importFrom(utils,
- import(BiocGenerics)
+@@ -20,7 +20,6 @@ import(BiocGenerics)
+ import(S4Vectors)
  import(IRanges)
  import(XVector)
 -import(zlibbioc)