[med-svn] r18368 - in trunk/packages/R/r-bioc-rtracklayer/trunk/debian: . patches

[Andreas Tille]

Author: tille
Date: 2014-10-21 18:59:09 +0000 (Tue, 21 Oct 2014)
New Revision: 18368

Modified:
   trunk/packages/R/r-bioc-rtracklayer/trunk/debian/changelog
   trunk/packages/R/r-bioc-rtracklayer/trunk/debian/control
   trunk/packages/R/r-bioc-rtracklayer/trunk/debian/copyright
   trunk/packages/R/r-bioc-rtracklayer/trunk/debian/patches/use_debian_packaged_zlib.patch
Log:
New upstream vesion


Modified: trunk/packages/R/r-bioc-rtracklayer/trunk/debian/changelog
===================================================================
--- trunk/packages/R/r-bioc-rtracklayer/trunk/debian/changelog	2014-10-21 05:10:25 UTC (rev 18367)
+++ trunk/packages/R/r-bioc-rtracklayer/trunk/debian/changelog	2014-10-21 18:59:09 UTC (rev 18368)
@@ -1,3 +1,10 @@
+r-bioc-rtracklayer (1.26.0-1) experimental; urgency=medium
+
+  * New upstream version
+  + cme fix dpkg-control
+
+ -- Andreas Tille <tille at debian.org>  Tue, 21 Oct 2014 20:34:34 +0200
+
 r-bioc-rtracklayer (1.24.2-1) unstable; urgency=medium
 
   * New upstream version

Modified: trunk/packages/R/r-bioc-rtracklayer/trunk/debian/control
===================================================================
--- trunk/packages/R/r-bioc-rtracklayer/trunk/debian/control	2014-10-21 05:10:25 UTC (rev 18367)
+++ trunk/packages/R/r-bioc-rtracklayer/trunk/debian/control	2014-10-21 18:59:09 UTC (rev 18368)
@@ -8,14 +8,8 @@
                r-base-dev,
                r-cran-xml,
                r-cran-rcurl,
-               r-bioc-biocgenerics,
-               r-bioc-iranges,
-               r-bioc-biostrings,
-               r-bioc-genomicranges,
-               r-bioc-genomicalignments,
-               r-bioc-bsgenome,
-               r-bioc-rsamtools
-Standards-Version: 3.9.5
+               r-bioc-genomicalignments (>= 1.2.0)
+Standards-Version: 3.9.6
 Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-bioc-rtracklayer/trunk/
 Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-rtracklayer/trunk/
 Homepage: http://bioconductor.org/packages/release/bioc/html/rtracklayer.html
@@ -27,13 +21,7 @@
          ${shlibs:Depends},
          r-cran-xml,
          r-cran-rcurl,
-         r-bioc-biocgenerics,
-         r-bioc-iranges,
-         r-bioc-biostrings,
-         r-bioc-genomicranges,
-         r-bioc-genomicalignments,
-         r-bioc-bsgenome,
-         r-bioc-rsamtools
+         r-bioc-genomicalignments (>= 1.2.0)
 Description: GNU R interface to genome browsers and their annotation tracks
  Extensible framework for interacting with multiple genome browsers
  (currently UCSC built-in) and manipulating annotation tracks in various
@@ -41,4 +29,3 @@
  built-in). The user may export/import tracks to/from the supported
  browsers, as well as query and modify the browser state, such as the
  current viewport.
-

Modified: trunk/packages/R/r-bioc-rtracklayer/trunk/debian/copyright
===================================================================
--- trunk/packages/R/r-bioc-rtracklayer/trunk/debian/copyright	2014-10-21 05:10:25 UTC (rev 18367)
+++ trunk/packages/R/r-bioc-rtracklayer/trunk/debian/copyright	2014-10-21 18:59:09 UTC (rev 18368)
@@ -4,12 +4,12 @@
 Source: http://bioconductor.org/packages/release/bioc/html/rtracklayer.html
 
 Files: *
-Copyright: © 2006-2013 Michael Lawrence, Vince Carey, Robert Gentleman 
+Copyright: © 2006-2014 Michael Lawrence, Vince Carey, Robert Gentleman 
 License: Artistic-2.0
 
 
 Files: debian/*
-Copyright: 2013 Andreas Tille <tille at debian.org>
+Copyright: 2013-2014 Andreas Tille <tille at debian.org>
 License: Artistic-2.0
 
 License: Artistic-2.0

Modified: trunk/packages/R/r-bioc-rtracklayer/trunk/debian/patches/use_debian_packaged_zlib.patch
===================================================================
--- trunk/packages/R/r-bioc-rtracklayer/trunk/debian/patches/use_debian_packaged_zlib.patch	2014-10-21 05:10:25 UTC (rev 18367)
+++ trunk/packages/R/r-bioc-rtracklayer/trunk/debian/patches/use_debian_packaged_zlib.patch	2014-10-21 18:59:09 UTC (rev 18368)
@@ -6,14 +6,14 @@
 --- a/DESCRIPTION
 +++ b/DESCRIPTION
 @@ -5,7 +5,7 @@ Author: Michael Lawrence, Vince Carey, R
- Depends: R (>= 2.10), methods, GenomicRanges (>= 1.15.26)
- Imports: XML (>= 1.98-0), BiocGenerics (>= 0.7.7), IRanges (>=
-         1.19.34), XVector (>= 0.1.3), GenomicRanges (>= 1.15.26),
--        Biostrings (>= 2.29.18), BSgenome (>= 1.23.1), zlibbioc, RCurl
-+        Biostrings (>= 2.29.18), BSgenome (>= 1.23.1), RCurl
-         (>= 1.4-2), Rsamtools (>= 1.13.1), GenomicAlignments, tools
- Suggests: humanStemCell, microRNA (>= 1.1.1), genefilter, limma,
-         org.Hs.eg.db, BSgenome.Hsapiens.UCSC.hg19,
+ Depends: R (>= 2.10), methods, GenomicRanges (>= 1.17.39)
+ Imports: XML (>= 1.98-0), BiocGenerics (>= 0.11.3), S4Vectors (>=
+         0.2.3), IRanges (>= 1.99.28), XVector (>= 0.5.8), GenomeInfoDb
+-        (>= 1.1.19), Biostrings (>= 2.33.14), zlibbioc, RCurl (>=
++        (>= 1.1.19), Biostrings (>= 2.33.14), RCurl (>=
+         1.4-2), Rsamtools (>= 1.17.8), GenomicAlignments (>= 1.1.16),
+         tools
+ Suggests: BSgenome (>= 1.33.4), humanStemCell, microRNA (>= 1.1.1),
 --- a/NAMESPACE
 +++ b/NAMESPACE
 @@ -6,7 +6,6 @@ useDynLib(rtracklayer, .registration = T