[med-svn] r18376 - in trunk/packages/R/r-bioc-biovizbase/trunk/debian: . tests

[Andreas Tille]

Author: tille
Date: 2014-10-23 06:29:10 +0000 (Thu, 23 Oct 2014)
New Revision: 18376

Modified:
   trunk/packages/R/r-bioc-biovizbase/trunk/debian/changelog
   trunk/packages/R/r-bioc-biovizbase/trunk/debian/control
   trunk/packages/R/r-bioc-biovizbase/trunk/debian/rules
   trunk/packages/R/r-bioc-biovizbase/trunk/debian/tests/run-unit-test
Log:
New upstream version with adapted dependencies


Modified: trunk/packages/R/r-bioc-biovizbase/trunk/debian/changelog
===================================================================
--- trunk/packages/R/r-bioc-biovizbase/trunk/debian/changelog	2014-10-22 21:44:08 UTC (rev 18375)
+++ trunk/packages/R/r-bioc-biovizbase/trunk/debian/changelog	2014-10-23 06:29:10 UTC (rev 18376)
@@ -1,4 +1,4 @@
-r-bioc-biovizbase (1.14.0-1) UNRELEASED; urgency=medium
+r-bioc-biovizbase (1.14.0-1) experimental; urgency=medium
 
   * New upstream version
   * cme fix dpkg-control

Modified: trunk/packages/R/r-bioc-biovizbase/trunk/debian/control
===================================================================
--- trunk/packages/R/r-bioc-biovizbase/trunk/debian/control	2014-10-22 21:44:08 UTC (rev 18375)
+++ trunk/packages/R/r-bioc-biovizbase/trunk/debian/control	2014-10-23 06:29:10 UTC (rev 18376)
@@ -12,8 +12,7 @@
                r-cran-nnet,
                r-cran-rcolorbrewer,
                r-cran-scales,
-               r-bioc-genomicalignments (>= 1.2.0),
-               r-bioc-genomicfeatures (>= 1.18.0)
+               r-bioc-variantannotation (>= 1.12.0)
 Standards-Version: 3.9.6
 Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-bioc-biovizbase/trunk/
 Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-biovizbase/trunk/
@@ -30,8 +29,7 @@
          r-cran-nnet,
          r-cran-rcolorbrewer,
          r-cran-scales,
-         r-bioc-genomicalignments (>= 1.2.0),
-         r-bioc-genomicfeatures (>= 1.18.0)
+         r-bioc-variantannotation (>= 1.12.0)
 Description: GNU R basic graphic utilities for visualization of genomic data
  The biovizBase package is designed to provide a set of utilities, color
  schemes and conventions for genomic data. It serves as the base for

Modified: trunk/packages/R/r-bioc-biovizbase/trunk/debian/rules
===================================================================
--- trunk/packages/R/r-bioc-biovizbase/trunk/debian/rules	2014-10-22 21:44:08 UTC (rev 18375)
+++ trunk/packages/R/r-bioc-biovizbase/trunk/debian/rules	2014-10-23 06:29:10 UTC (rev 18376)
@@ -2,3 +2,6 @@
 
 debRreposname=bioc
 include /usr/share/R/debian/r-cran.mk
+
+clean::
+	rm -f src/*.so

Modified: trunk/packages/R/r-bioc-biovizbase/trunk/debian/tests/run-unit-test
===================================================================
--- trunk/packages/R/r-bioc-biovizbase/trunk/debian/tests/run-unit-test	2014-10-22 21:44:08 UTC (rev 18375)
+++ trunk/packages/R/r-bioc-biovizbase/trunk/debian/tests/run-unit-test	2014-10-23 06:29:10 UTC (rev 18376)
@@ -15,4 +15,4 @@
   source("$rfile", echo=TRUE)
 EOT
 done
-rm -rf *
+# rm -rf *