[med-svn] r18388 - trunk/packages/last-align/trunk/debian

[Andreas Tille]

Author: tille
Date: 2014-10-23 20:58:37 +0000 (Thu, 23 Oct 2014)
New Revision: 18388

Modified:
   trunk/packages/last-align/trunk/debian/changelog
   trunk/packages/last-align/trunk/debian/copyright
   trunk/packages/last-align/trunk/debian/rules
Log:
Upstream dropped .py suffix - adpapt help2man calls in d/rules


Modified: trunk/packages/last-align/trunk/debian/changelog
===================================================================
--- trunk/packages/last-align/trunk/debian/changelog	2014-10-23 20:38:08 UTC (rev 18387)
+++ trunk/packages/last-align/trunk/debian/changelog	2014-10-23 20:58:37 UTC (rev 18388)
@@ -3,6 +3,7 @@
   * New upstream version
   * get-orig-source target now with xz compression
   * cme fix dpkg-control
+  * Upstream dropped .py suffix - adpapt help2man calls in d/rules
 
  -- Andreas Tille <tille at debian.org>  Thu, 23 Oct 2014 22:30:48 +0200
 

Modified: trunk/packages/last-align/trunk/debian/copyright
===================================================================
--- trunk/packages/last-align/trunk/debian/copyright	2014-10-23 20:38:08 UTC (rev 18387)
+++ trunk/packages/last-align/trunk/debian/copyright	2014-10-23 20:58:37 UTC (rev 18388)
@@ -13,17 +13,17 @@
 Comment: On Debian systems the full text of the GNU General Public License
  can be found in the `/usr/share/common-licenses/GPL-3' file.
 
-Files: CA_code/*
+Files: src/CA_code/*
 Copyright: not copyrighted
 License: public-domain
  Public domain code from Yi-Kuo Yu & Stephen Altschul, NCBI 
 
-Files: CA_code/lambda_calculator.c
+Files: src/CA_code/lambda_calculator.c
 Copyright: © 2008 Michiaki Hamada
 License: GPL-3+
 Comment: Adapted from public domain code by Yi-Kuo Yu, NCBI
 
-Files: CA_code/lambda_calculator.h
+Files: src/CA_code/lambda_calculator.h
 Copyright: © 2008 Michiaki Hamada
 License: GPL-3+
 

Modified: trunk/packages/last-align/trunk/debian/rules
===================================================================
--- trunk/packages/last-align/trunk/debian/rules	2014-10-23 20:38:08 UTC (rev 18387)
+++ trunk/packages/last-align/trunk/debian/rules	2014-10-23 20:58:37 UTC (rev 18388)
@@ -25,14 +25,14 @@
 
 override_dh_auto_install:
 	make install prefix=$(CURDIR)/debian/$(pkg)/usr
-	prename 's/.py$$//' debian/$(pkg)/usr/bin/*py
-	prename 's/.sh$$//' debian/$(pkg)/usr/bin/*sh
+#	prename 's/.py$$//' debian/$(pkg)/usr/bin/*py
+#	prename 's/.sh$$//' debian/$(pkg)/usr/bin/*sh
 
         # try to create man pages whereever possible
 	mkdir -p $(mandir)
 	$(HELP2MAN) \
 		 --name='make a dotplot, a.k.a. Oxford Grid, of alignments in LAST tabular format' \
-	         $(CURDIR)/scripts/last-dotplot.py > $(mandir)/last-dotplot.1
+	         $(CURDIR)/scripts/last-dotplot > $(mandir)/last-dotplot.1
 	$(HELP2MAN) \
 	         --name="genome-scale comparison of biological sequences" \
 	         --help-option="-h" \
@@ -47,39 +47,39 @@
                  $(CURDIR)/src/lastex > $(mandir)/lastex.1
 	$(HELP2MAN) \
                  --name="Sort MAF-format alignments by sequence name" \
-                 $(CURDIR)/scripts/maf-sort.sh > $(mandir)/maf-sort.1
+                 $(CURDIR)/scripts/maf-sort > $(mandir)/maf-sort.1
 	$(HELP2MAN) \
                  --name="changes the order of the sequences in MAF-format alignments" \
-                 $(CURDIR)/scripts/maf-swap.py > $(mandir)/maf-swap.1
+                 $(CURDIR)/scripts/maf-swap > $(mandir)/maf-swap.1
 	$(HELP2MAN) \
                  --name="Add extra column with mapping probabilities" \
-                 $(CURDIR)/scripts/last-map-probs.py > $(mandir)/last-map-probs.1
+                 $(CURDIR)/scripts/last-map-probs > $(mandir)/last-map-probs.1
 	# This script has not enough to put in a manual page.
 	#$(HELP2MAN) \
         #         --name="Read files of lastal output, merge corresponding batches, and write them." \
-        #         $(CURDIR)/scripts/last-merge-batches.py > $(mandir)/last-merge-batches.1
+        #         $(CURDIR)/scripts/last-merge-batches > $(mandir)/last-merge-batches.1
         # These scripts were droped
 	#$(HELP2MAN) \
         #         --name="Clean up MAF-format alignments" \
-        #         $(CURDIR)/scripts/last-reduce-alignments.sh > $(mandir)/last-reduce-alignments.1
+        #         $(CURDIR)/scripts/last-reduce-alignments > $(mandir)/last-reduce-alignments.1
 	#$(HELP2MAN) \
         #         --name='Remove MAF-format alignments which are "dominated" by others' \
-        #         $(CURDIR)/scripts/last-remove-dominated.py > $(mandir)/last-remove-dominated.1
+        #         $(CURDIR)/scripts/last-remove-dominated > $(mandir)/last-remove-dominated.1
 	$(HELP2MAN) \
                  --name='Estimates "split" or "spliced" alignments.' \
                  $(CURDIR)/src/last-split > $(mandir)/last-split.1
 	$(HELP2MAN) \
                  --name="Join two or more sets of MAF-format multiple alignments" \
-                 $(CURDIR)/scripts/maf-join.py > $(mandir)/maf-join.1
+                 $(CURDIR)/scripts/maf-join > $(mandir)/maf-join.1
 	$(HELP2MAN) \
                  --name="Convert MAF-format alignments to tabular format" \
-                 $(CURDIR)/scripts/maf-convert.py > $(mandir)/maf-convert.1
+                 $(CURDIR)/scripts/maf-convert > $(mandir)/maf-convert.1
 	$(HELP2MAN) \
                  --name="Cull alignments whose top\-sequence coordinates are contained in LIMIT or more" \
-                 $(CURDIR)/scripts/maf-cull.py > $(mandir)/maf-cull.1
+                 $(CURDIR)/scripts/maf-cull > $(mandir)/maf-cull.1
 	$(HELP2MAN) \
                  --name="Read alignments of paired DNA reads to a genome" \
-                 $(CURDIR)/scripts/last-pair-probs.py > $(mandir)/last-pair-probs.1
+                 $(CURDIR)/scripts/last-pair-probs > $(mandir)/last-pair-probs.1
 
 override_dh_installchangelogs:
 	dh_installchangelogs ChangeLog.txt