[med-svn] [sra-sdk] 03/06: Merge tag 'upstream/2.4.2-1'
Andreas Tille
tille at debian.org
Fri Oct 24 12:53:56 UTC 2014
This is an automated email from the git hooks/post-receive script.
tille pushed a commit to branch master
in repository sra-sdk.
commit 7991ab2d0699381dd4b5e0f4eea87539d333dc82
Merge: 8da0436 6d0c86f
Author: Andreas Tille <tille at debian.org>
Date: Fri Oct 24 14:29:45 2014 +0200
Merge tag 'upstream/2.4.2-1'
Upstream version 2.4.2-1
Conflicts:
.gitignore
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libs/axf/get_mate_align_ids.c | 271 -
libs/axf/make-cmp-read_desc.c | 156 -
libs/axf/mismatch-restore-qual.c | 129 -
libs/axf/not-my-row.c | 72 -
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libs/kdb/wtrieidx-v1.c | 1100 -
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libs/klib/ptpersist.c | 1099 -
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libs/klib/release-vers.h | 41 -
libs/klib/report.c | 854 -
libs/klib/sra-release-version.c | 328 -
libs/klib/status-rc-strings.c | 39 -
libs/klib/status-rc.c | 156 -
libs/klib/status.c | 436 -
libs/klib/symtab.c | 736 -
libs/klib/text.c | 841 -
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libs/search/nucstrstr-icc-i386-dbg.pic.s | 31488 -------------------
libs/search/nucstrstr-icc-i386-prof.pic.s | 7600 -----
libs/search/nucstrstr-icc-i386-rel.pic.s | 6711 ----
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tools/sra-pileup/walk_debug.h | 42 +
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tools/sra-pileup/writer.h | 32 +
tools/sra-shell/Makefile | 58 +
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tools/sra-shell/job-exec/Makefile | 71 +
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tools/sra-sort/meta-pair.c | 4 +-
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tools/sra-stat/sra-stat.vers.h | 1 +
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tools/sra/sra-dbcc.c | 442 +
tools/sra/table-vers.c | 236 +
tools/sra/table-vers.vers | 1 +
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tools/srapath/srapath.vers.h | 1 +
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tools/util/crc32sum.c | 279 +
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tools/util/vdb-unlock.vers.h | 1 +
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tools/util/win/syspass.c | 2 +-
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tools/vcf-loader/vcf-database.c | 165 +
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tools/vcf-loader/vcf-grammar.h | 61 +
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tools/vcf-loader/vcf-lex.c | 2516 ++
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tools/vcf-loader/vcf-parse.h | 88 +
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tools/vdb-config/Makefile | 20 +-
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tools/vdb-config/interactive.cpp | 1048 +
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tools/vdb-config/util.cpp | 1096 +
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tools/vdb-config/vdb-config.c | 364 +-
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tools/vdb-config/vdb-config2.cpp | 30 +
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tools/vdb-copy/.gitignore | 17 +
tools/vdb-copy/Makefile | 5 +-
tools/vdb-copy/coldefs.c | 8 +-
tools/vdb-copy/column_match.c | 31 +
tools/vdb-copy/column_match.h | 42 +
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tools/vdb-copy/copy_context.h | 58 +
tools/vdb-copy/copy_meta.c | 6 +-
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tools/vdb-copy/get_platform.h | 92 +-
tools/vdb-copy/helper.c | 8 +-
tools/vdb-copy/type_matcher.c | 14 +-
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tools/vdb-copy/vdb-copy.vers | 2 +-
tools/vdb-copy/vdb-copy.vers.h | 1 +
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tools/vdb-decrypt/vdb-encrypt.vers.h | 1 +
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tools/vdb-dump/vdb-boot.c | 448 +
tools/vdb-dump/vdb-boot.vers | 1 +
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tools/vdb-dump/vdb-dump-bin.c | 1277 +
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tools/vdb-dump/vdb-dump-coldefs.c | 42 +-
tools/vdb-dump/vdb-dump-coldefs.h | 3 +
tools/vdb-dump/vdb-dump-context.c | 69 +-
tools/vdb-dump/vdb-dump-context.h | 11 +-
tools/vdb-dump/vdb-dump-fastq.c | 8 +-
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tools/vdb-dump/vdb-dump-helper.h | 8 +-
tools/vdb-dump/vdb-dump-num-gen.c | 29 +
tools/vdb-dump/vdb-dump-num-gen.h | 2 +
tools/vdb-dump/vdb-dump-print.c | 550 +
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tools/vdb-dump/vdb-dump.vers | 2 +-
tools/vdb-dump/vdb-dump.vers.h | 1 +
tools/vdb-dump/vdb_info.c | 1205 +
tools/vdb-dump/vdb_info.h | 47 +
tools/vdb-validate/Makefile | 5 +-
tools/vdb-validate/vdb-validate.c | 729 +-
tools/vdb-validate/vdb-validate.vers | 2 +-
tools/vdb-validate/vdb-validate.vers.h | 1 +
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tools/vdbview/background.pas | 277 +
tools/vdbview/buttons.svg | 268 +
tools/vdbview/columnsel.lfm | 90 +
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tools/vdbview/dataproxy.pas | 602 +
tools/vdbview/gotoform.lfm | 56 +
tools/vdbview/gotoform.pas | 47 +
tools/vdbview/jobdef.pas | 27 +
tools/vdbview/linkedlist.pas | 186 +
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tools/vdbview/logo_64.png | Bin 0 -> 910 bytes
tools/vdbview/mainwindow.lfm | 973 +
tools/vdbview/mainwindow.pas | 793 +
tools/vdbview/searchform.lfm | 69 +
tools/vdbview/searchform.pas | 79 +
tools/vdbview/selector_types.pas | 20 +
tools/vdbview/support_unit.pas | 217 +
tools/vdbview/svdb.pas | 676 +
tools/vdbview/svdb_obj.pas | 339 +
tools/vdbview/vdbview.ico | Bin 0 -> 25890 bytes
tools/vdbview/vdbview.lpi | 343 +
tools/vdbview/vdbview.lpr | 24 +
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tools/vdbview/vdbview1.ico | Bin 0 -> 25890 bytes
tools/vdbview/version.lfm | 40 +
tools/vdbview/version.pas | 33 +
tools/vtblcp/Makefile | 97 +
tools/vtblcp/vtblcp-priv.h | 40 +
tools/vtblcp/vtblcp.c | 979 +
tools/vtblcp/vtblcp.vers | 1 +
tools/workspace/.gitignore | 3 +
tools/workspace/Makefile | 125 +
tools/workspace/path-to-kar-file.cpp | 117 +
tools/workspace/prefs-lex.l | 181 +
tools/workspace/prefs-yacc.y | 189 +
tools/workspace/sra.cpp | 1514 +
tools/workspace/sra.vers | 1 +
tools/workspace/sratoolkit-exception.cpp | 126 +
tools/workspace/sratoolkit-exception.hpp | 111 +
tools/workspace/token.c | 228 +
tools/workspace/token.h | 99 +
tools/workspace/workspace.cpp | 1116 +
win-configure.bat | 1 +
1812 files changed, 133166 insertions(+), 527259 deletions(-)
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