[med-svn] [bowtie2] 04/04: Merge tag 'upstream/2.2.4'

[Andreas Tille]

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tille pushed a commit to branch master
in repository bowtie2.

commit eab187a9eca75a761b5030c0c44e3fc8d2124df0
Merge: 7a7175e ba2b9b4
Author: Andreas Tille <tille at debian.org>
Date:   Sun Oct 26 07:15:43 2014 +0100

    Merge tag 'upstream/2.2.4'
    
    Upstream version 2.2.4

 MANUAL          |  21 ++-
 MANUAL.markdown |  25 ++-
 Makefile        |  15 +-
 NEWS            |   9 +
 VERSION         |   2 +-
 aligner_seed.h  | 110 ++++++++----
 bowtie2         |  11 +-
 bt2_search.cpp  |  41 ++++-
 doc/manual.html | 546 ++++++++++++++++++--------------------------------------
 pat.cpp         |   3 +-
 read.h          |   6 +
 sam.cpp         |  16 ++
 sam.h           |   7 +-
 13 files changed, 380 insertions(+), 432 deletions(-)

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