[med-svn] [gmap] branch upstream updated (888c9bb -> 11ae4ff)

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a change to branch upstream
in repository gmap.

      from  888c9bb   Imported Upstream version 2014-10-15
       new  11ae4ff   Imported Upstream version 2014-10-22

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 ChangeLog             |  33 ++++++++++
 VERSION               |   2 +-
 configure             |  24 ++++----
 src/bitpack64-write.c |  20 +++---
 src/genome128_hr.c    |   6 +-
 src/gregion.c         | 167 ++++++++++++++++++++++++++++++++++++++++----------
 src/indexdb-write.c   |   3 +-
 src/sarray-read.c     |  31 +++++++---
 src/sarray-write.c    |   3 +-
 src/shortread.c       |  92 +++++++++++++++------------
 src/stage1hr.c        |   3 +-
 src/stage2.c          | 134 +++++++++++++++++++---------------------
 src/stage3hr.c        |  57 ++++++++++++++---
 13 files changed, 383 insertions(+), 192 deletions(-)

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/gmap.git