[med-svn] r17906 - trunk/packages/arb/trunk/debian

[Elmar Pruesse]

Author: epruesse-guest
Date: 2014-09-02 13:26:53 +0000 (Tue, 02 Sep 2014)
New Revision: 17906

Modified:
   trunk/packages/arb/trunk/debian/changelog
Log:
update changelog


Modified: trunk/packages/arb/trunk/debian/changelog
===================================================================
--- trunk/packages/arb/trunk/debian/changelog	2014-09-02 13:21:11 UTC (rev 17905)
+++ trunk/packages/arb/trunk/debian/changelog	2014-09-02 13:26:53 UTC (rev 17906)
@@ -2,17 +2,59 @@
 
   * New upstream version
   * debian/upstream -> debian/upstream/metadata
-  * Build-Depends: libglib2.0-dev
-  * debian/patches/0_no_GL.patch: Switch of GL for the moment since it
-    generates build errors (FIXME)
-  * Exclude fasttree, mafft, mrbayes, muscle, phyml and probcons from building
-    in GDE and rather use the according Debian packages by adding these to the
-    list of dependencies
-  * d/rules: Add explicite --remove-section=.comment option to manual strip
-    call
-  * cme fix dpkg-control
+  * patches removed:
+     - 10_config.makefiles.patch,
+       80_no_GL.patch
+         removed in favor of creating file from config.makefile.template via 
+         sed in debian/control
+     - 20_Makefile_main.patch
+         merged upstream
+     - 21_Makefiles.patch
+         no longer needed
+     - 30_tmpfile_CVE-2008-5378.patch: 
+         merged upstream
+     - 50_fix_gcc-4.8.patch:
+         merged upstream
+     - 40_add_libGLU.patch:
+         libGLU not needed for arb_ntree)
+     - 60_use_debian_packaged_raxml.patch:
+         merged upstream
+     - 70_hardening.patch
+         merged upstream
+     - 72_add_math_lib_to_linker.patch
+         does not appear to be needed
+  * patches added:
+     - 10_upstream_r12793__show_db_load_progress:
+         backported patch showing progress while ARB is loading a database
+         (needed as indicator/splash screen while ARB is launching)
+     - 20_upstream_r12794__socket_permissions
+         backported security fix
+  * debian/rules:
+     - create config.makefile from override_dh_configure target
+     - use "make tarfile" in override_dh_install
+     - remove extra cleaning not needed for ARB 6
+     - use "dh_install --list-missing" to avoid missing files
+     - added override_dh_fixperms target
+  * debian/control:
+     - added libarb-dev package
+     - Build-Depends: added libglib2.0-dev
+     - Depends: added mafft, mrbayes, phyml, xdg-utils
+     - Suggests: removed phyml
+  * debian/*.install:
+     - "unrolled" confusing globbing to select files
+     - pick files from debian/tmp
+     - moved all config files to /etc/arb
+  * scripts:
+     - removed arb-add-pt-server
+     - launch-wrapper: 
+       - only add demo.arb to newly created $ARBUSERDATA
+       - pass commandline arguments through bin/arb wrapper
+     - preinst: removing old PT server index files on upgrade from 5.5*
+  * rewrote arb.1 manfile
+  * added file icon for ARB databases
+  * using upstream arb_tcp.dat
 
- -- Andreas Tille <tille at debian.org>  Tue, 02 Sep 2014 15:00:06 +0200
+ -- Elmar Pruesse <elmar at pruesse.net>  Tue, 02 Sep 2014 15:15:06 +0200
 
 arb (5.5-5) unstable; urgency=low