[med-svn] [bowtie2] 02/02: Do not use copy of outdated gcc header file which destroys portability to other architectures. PLEASE TEST!!!!!

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a commit to branch master
in repository bowtie2.

commit 3c92cdcec93c059c24f6169445875d3451b3db2a
Author: Andreas Tille <tille at debian.org>
Date:   Wed Sep 3 14:14:48 2014 +0200

    Do not use copy of outdated gcc header file which destroys portability to other architectures.  PLEASE TEST!!!!!
---
 debian/changelog                                         |  2 ++
 debian/patches/do_not_use_outdated_copy_of_cpuid_h.patch | 15 +++++++++++++++
 debian/patches/series                                    |  1 +
 3 files changed, 18 insertions(+)

diff --git a/debian/changelog b/debian/changelog
index 213e693..17824d2 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -2,6 +2,8 @@ bowtie2 (2.2.3-2) UNRELEASED; urgency=medium
 
   * d/control: Priority: optional
   * add missing DEP3 description
+  * Do not use copy of outdated gcc header file which destroys
+    portability to other architectures.
 
  -- Andreas Tille <tille at debian.org>  Sat, 23 Aug 2014 19:20:52 +0200
 
diff --git a/debian/patches/do_not_use_outdated_copy_of_cpuid_h.patch b/debian/patches/do_not_use_outdated_copy_of_cpuid_h.patch
new file mode 100644
index 0000000..24e0d9d
--- /dev/null
+++ b/debian/patches/do_not_use_outdated_copy_of_cpuid_h.patch
@@ -0,0 +1,15 @@
+Author: Andreas Tille <tille at debian.org>
+Last-Update: Wed, 03 Sep 2014 09:50:22 +0200
+Description: Do not use copy of outdated gcc header file which destroys
+  portability to other architectures.
+
+--- a/Makefile
++++ b/Makefile
+@@ -59,7 +59,6 @@ endif
+ POPCNT_CAPABILITY ?= 1
+ ifeq (1, $(POPCNT_CAPABILITY))
+     EXTRA_FLAGS += -DPOPCNT_CAPABILITY
+-    INC += -I third_party
+ endif
+ 
+ MM_DEF = 
diff --git a/debian/patches/series b/debian/patches/series
index 814900f..7944b03 100644
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -1 +1,2 @@
 hardening.patch
+do_not_use_outdated_copy_of_cpuid_h.patch

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/bowtie2.git