[med-svn] r17951 - trunk/packages/arb/trunk/debian/patches

[Elmar Pruesse]

Author: epruesse-guest
Date: 2014-09-07 17:10:10 +0000 (Sun, 07 Sep 2014)
New Revision: 17951

Modified:
   trunk/packages/arb/trunk/debian/patches/60_use_packaged_phyml
Log:
forgot to quilt refresh...


Modified: trunk/packages/arb/trunk/debian/patches/60_use_packaged_phyml
===================================================================
--- trunk/packages/arb/trunk/debian/patches/60_use_packaged_phyml	2014-09-07 16:50:36 UTC (rev 17950)
+++ trunk/packages/arb/trunk/debian/patches/60_use_packaged_phyml	2014-09-07 17:10:10 UTC (rev 17951)
@@ -19,3 +19,14 @@
  	PROBCONS/PROBCONS.dummy \
  
  # --------------------------------------------------------------------------------
+--- a/GDEHELP/MENUS/phyml_20130708.menu
++++ b/GDEHELP/MENUS/phyml_20130708.menu
+@@ -4,7 +4,7 @@
+ #define PHYML_CALL(seqtype) \
+         (   GOTO_LOCAL_DIR;GEN_PHYLIP(infile) && \
+             RUN_IN_WINDOW(if [ "$TREE" != "tree_?????" -a ! -z "$TREE" ]; then arb_export_tree $TREE > input_tree.in; INPUT_TREE_PARAM=-uinput_tree.in; fi; \
+-                          ($ARBHOME/bin/phyml_20130708 \
++                          (phyml \
+                           --input=infile \
+                           --datatype=seqtype \
+                           --model=$MODEL \