[med-svn] r17964 - trunk/packages/hhsuite/trunk/debian
Laszlo Kajan
lkajan at moszumanska.debian.org
Mon Sep 8 19:11:09 UTC 2014
Author: lkajan
Date: 2014-09-08 19:11:08 +0000 (Mon, 08 Sep 2014)
New Revision: 17964
Modified:
trunk/packages/hhsuite/trunk/debian/README.source
trunk/packages/hhsuite/trunk/debian/changelog
trunk/packages/hhsuite/trunk/debian/control
trunk/packages/hhsuite/trunk/debian/docs
trunk/packages/hhsuite/trunk/debian/hhsuite-doc.doc-base
trunk/packages/hhsuite/trunk/debian/hhsuite.docs
trunk/packages/hhsuite/trunk/debian/rules
Log:
2.0.16-2: Bumped standard to 3.9.5. Pulled 2.0.16-1 -> 2.0.16-1u1 changes from Ubuntu; Completed Steffens changes; Removed libpng12-dev dependency by disabling png feature. (Closes: #742579)
Modified: trunk/packages/hhsuite/trunk/debian/README.source
===================================================================
--- trunk/packages/hhsuite/trunk/debian/README.source 2014-09-08 10:04:41 UTC (rev 17963)
+++ trunk/packages/hhsuite/trunk/debian/README.source 2014-09-08 19:11:08 UTC (rev 17964)
@@ -5,4 +5,9 @@
.......
Patches are documented in their headers.
+Not architecture independent documentation
+..........................................
+This is to help Ubuntu developers, see [1].
+[1] https://launchpad.net/ubuntu/+source/hhsuite/2.0.16-1ubuntu1
+
# vim:et:ts=2:
Modified: trunk/packages/hhsuite/trunk/debian/changelog
===================================================================
--- trunk/packages/hhsuite/trunk/debian/changelog 2014-09-08 10:04:41 UTC (rev 17963)
+++ trunk/packages/hhsuite/trunk/debian/changelog 2014-09-08 19:11:08 UTC (rev 17964)
@@ -1,4 +1,4 @@
-hhsuite (2.0.16-2) UNRELEASED; urgency=low
+hhsuite (2.0.16-2) unstable; urgency=low
[Steffen Moeller]
* Bumped standard to 3.9.4.
@@ -8,8 +8,15 @@
* Added CHANGES file to .docs
* joined hardening patch with rest1
- -- Steffen Moeller <moeller at debian.org> Thu, 25 Jul 2013 16:05:49 +0200
+ [Laszlo Kajan]
+ * Bumped standard to 3.9.5.
+ * Pulled 2.0.16-1 -> 2.0.16-1u1 changes from Ubuntu: arch all packages are
+ now amd64, since all arch dep packages are also amd64.
+ * Completed Steffen's changes.
+ * Removed libpng12-dev dependency by disabling png feature. (Closes: #742579)
+ -- Laszlo Kajan <lkajan at debian.org> Mon, 08 Sep 2014 19:32:43 +0200
+
hhsuite (2.0.16-1) unstable; urgency=low
[Laszlo Kajan]
Modified: trunk/packages/hhsuite/trunk/debian/control
===================================================================
--- trunk/packages/hhsuite/trunk/debian/control 2014-09-08 10:04:41 UTC (rev 17963)
+++ trunk/packages/hhsuite/trunk/debian/control 2014-09-08 19:11:08 UTC (rev 17964)
@@ -2,12 +2,12 @@
Section: science
Priority: extra
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders: Laszlo Kajan <lkajan at rostlab.org>
-Build-Depends: debhelper (>= 8.0.0), libffindex0-dev (>= 0.9.6.1), help2man, libpng12-dev
-Standards-Version: 3.9.4
+Uploaders: Laszlo Kajan <lkajan at debian.org>
+Build-Depends: debhelper (>= 8.0.0), libffindex0-dev (>= 0.9.6.1), help2man
+Standards-Version: 3.9.5
Homepage: http://toolkit.genzentrum.lmu.de/sections/search
-Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/hhsuite/trunk/
-Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/hhsuite/trunk/
+Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/hhsuite/trunk/
+Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/hhsuite/trunk/
Package: hhsuite
Architecture: amd64
@@ -33,14 +33,18 @@
alignments.
Package: hhsuite-doc
-Architecture: all
+Section: doc
+Architecture: amd64
Depends: ${shlibs:Depends}, ${misc:Depends}
Recommends: hhsuite
Description: documentation for HHsuite for HMM-HMM comparisons
- This package provides a PDF with the user guide for the HH-suite.
+ HH-suite is an open-source software package for sensitive protein sequence
+ searching based on the pairwise alignment of hidden Markov models (HMMs).
+ .
+ This package provides a PDF with the user guide for HH-suite.
Package: hhsuite-data
-Architecture: all
+Architecture: amd64
Depends: ${misc:Depends}
Description: sensitive protein sequence searching based on HMM-HMM alignment (data)
HH-suite is an open-source software package for sensitive protein sequence
Modified: trunk/packages/hhsuite/trunk/debian/docs
===================================================================
--- trunk/packages/hhsuite/trunk/debian/docs 2014-09-08 10:04:41 UTC (rev 17963)
+++ trunk/packages/hhsuite/trunk/debian/docs 2014-09-08 19:11:08 UTC (rev 17964)
@@ -1,2 +1 @@
README
-hhsuite-userguide.pdf
Modified: trunk/packages/hhsuite/trunk/debian/hhsuite-doc.doc-base
===================================================================
--- trunk/packages/hhsuite/trunk/debian/hhsuite-doc.doc-base 2014-09-08 10:04:41 UTC (rev 17963)
+++ trunk/packages/hhsuite/trunk/debian/hhsuite-doc.doc-base 2014-09-08 19:11:08 UTC (rev 17964)
@@ -5,4 +5,4 @@
Section: Science/Biology
Format: PDF
-Files: /usr/share/doc/hhsuite/hhsuite-userguide.pdf.gz
+Files: /usr/share/doc/hhsuite-doc/hhsuite-userguide.pdf.gz
Modified: trunk/packages/hhsuite/trunk/debian/hhsuite.docs
===================================================================
--- trunk/packages/hhsuite/trunk/debian/hhsuite.docs 2014-09-08 10:04:41 UTC (rev 17963)
+++ trunk/packages/hhsuite/trunk/debian/hhsuite.docs 2014-09-08 19:11:08 UTC (rev 17964)
@@ -1,2 +1 @@
README
-CHANGES
Modified: trunk/packages/hhsuite/trunk/debian/rules
===================================================================
--- trunk/packages/hhsuite/trunk/debian/rules 2014-09-08 10:04:41 UTC (rev 17963)
+++ trunk/packages/hhsuite/trunk/debian/rules 2014-09-08 19:11:08 UTC (rev 17964)
@@ -31,13 +31,17 @@
dh_installman
$(HHMANPAGES): %.1 : debian/tmp/usr/bin/%
- unset LD_PRELOAD && export LD_LIBRARY_PATH=debian/tmp/usr/lib && export HHLIB=/usr/share/hhsuite && help2man --no-info --help-option '-h all' --version-string $(VERSION) -n "$$n_$*" '$<' | sed -e 's/\(^\|[^\]\)-/\1\\-/g;' > '$@'
+ unset LD_PRELOAD && export LD_LIBRARY_PATH=debian/tmp/usr/lib && export HHLIB=. && help2man --no-info --help-option '-h all' --version-string $(VERSION) -n "$$n_$*" '$<' | sed -e 's/\(^\|[^\]\)-/\1\\-/g;' > '$@'
.PHONY: override_dh_clean
override_dh_clean:
rm -f $(HHMANPAGES)
dh_clean
+.PHONY: override_dh_auto_build
+override_dh_auto_build:
+ dh_auto_build -- NO_PNG=1
+
get-orig-source:
mkdir -p ../tarballs
uscan --verbose --force-download --destdir=../tarballs
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