[med-svn] r17988 - in trunk/packages/R: . r-bioc-ebimage r-bioc-ebimage/trunk r-bioc-ebimage/trunk/debian r-bioc-ebimage/trunk/debian/source r-bioc-ebimage/trunk/debian/upstream
Steffen Möller
moeller at moszumanska.debian.org
Thu Sep 11 09:25:06 UTC 2014
Author: moeller
Date: 2014-09-11 09:25:05 +0000 (Thu, 11 Sep 2014)
New Revision: 17988
Added:
trunk/packages/R/r-bioc-ebimage/
trunk/packages/R/r-bioc-ebimage/trunk/
trunk/packages/R/r-bioc-ebimage/trunk/debian/
trunk/packages/R/r-bioc-ebimage/trunk/debian/README.Debian
trunk/packages/R/r-bioc-ebimage/trunk/debian/README.test
trunk/packages/R/r-bioc-ebimage/trunk/debian/changelog
trunk/packages/R/r-bioc-ebimage/trunk/debian/compat
trunk/packages/R/r-bioc-ebimage/trunk/debian/control
trunk/packages/R/r-bioc-ebimage/trunk/debian/copyright
trunk/packages/R/r-bioc-ebimage/trunk/debian/docs
trunk/packages/R/r-bioc-ebimage/trunk/debian/rules
trunk/packages/R/r-bioc-ebimage/trunk/debian/source/
trunk/packages/R/r-bioc-ebimage/trunk/debian/source/format
trunk/packages/R/r-bioc-ebimage/trunk/debian/upstream/
trunk/packages/R/r-bioc-ebimage/trunk/debian/upstream/metadata
trunk/packages/R/r-bioc-ebimage/trunk/debian/watch
Log:
EBImage now compiles and loads for me.
It would be nice to see someone adopting this
package.
Property changes on: trunk/packages/R/r-bioc-ebimage/trunk/debian
___________________________________________________________________
Added: mergeWithUpstream
+ 1
Added: trunk/packages/R/r-bioc-ebimage/trunk/debian/README.Debian
===================================================================
--- trunk/packages/R/r-bioc-ebimage/trunk/debian/README.Debian (rev 0)
+++ trunk/packages/R/r-bioc-ebimage/trunk/debian/README.Debian 2014-09-11 09:25:05 UTC (rev 17988)
@@ -0,0 +1,13 @@
+Bioconductor qvalue for Debian
+──────────────────────────────
+
+Debian ftpmaster has requested to remove the "binary without source"
+manual.pdf. You can find it here online:
+
+ http://www.bioconductor.org/packages/release/bioc/vignettes/qvalue/inst/doc/manual.pdf
+
+besides other PDF documentation at the qvalue homepage
+
+ http://www.bioconductor.org/packages/release/bioc/html/qvalue.html
+
+ -- Andreas Tille <tille at debian.org> Thu, 07 Jun 2012 17:40:29 +0200
Added: trunk/packages/R/r-bioc-ebimage/trunk/debian/README.test
===================================================================
--- trunk/packages/R/r-bioc-ebimage/trunk/debian/README.test (rev 0)
+++ trunk/packages/R/r-bioc-ebimage/trunk/debian/README.test 2014-09-11 09:25:05 UTC (rev 17988)
@@ -0,0 +1,5 @@
+Notes on how this package can be tested.
+========================================
+
+This package can be tested by loading it into R with the command
+'library(EBImage)' in order to confirm its integrity.
Added: trunk/packages/R/r-bioc-ebimage/trunk/debian/changelog
===================================================================
--- trunk/packages/R/r-bioc-ebimage/trunk/debian/changelog (rev 0)
+++ trunk/packages/R/r-bioc-ebimage/trunk/debian/changelog 2014-09-11 09:25:05 UTC (rev 17988)
@@ -0,0 +1,5 @@
+r-bioc-ebimage (4.6.0-1) UNRELEASED; urgency=low
+
+ * Initial release.
+
+ -- Steffen Moeller <moeller at debian.org> Thu, 21 Aug 2014 18:36:51 +0200
Added: trunk/packages/R/r-bioc-ebimage/trunk/debian/compat
===================================================================
--- trunk/packages/R/r-bioc-ebimage/trunk/debian/compat (rev 0)
+++ trunk/packages/R/r-bioc-ebimage/trunk/debian/compat 2014-09-11 09:25:05 UTC (rev 17988)
@@ -0,0 +1 @@
+9
Added: trunk/packages/R/r-bioc-ebimage/trunk/debian/control
===================================================================
--- trunk/packages/R/r-bioc-ebimage/trunk/debian/control (rev 0)
+++ trunk/packages/R/r-bioc-ebimage/trunk/debian/control 2014-09-11 09:25:05 UTC (rev 17988)
@@ -0,0 +1,23 @@
+Source: r-bioc-ebimage
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Steffen Moeller <moeller at debian.org>
+Section: gnu-r
+Priority: optional
+Build-Depends: debhelper (>= 9),
+ cdbs,
+ r-base-dev (>= 3.0)
+Standards-Version: 3.9.5
+Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-bioc-ebimage/trunk/
+Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-ebimage/trunk/
+Homepage: http://www.bioconductor.org/packages/release/bioc/html/ebimage.html
+
+Package: r-bioc-ebimage
+Architecture: all
+Depends: ${R:Depends},
+ ${shlib:Depends}
+Description: GNU R toolbox for image processing
+ EBImage is an R package which provides general purpose functionality for
+ the reading, writing, processing and analysis of images. Furthermore,
+ in the context of microscopy based cellular assays, EBImage offers
+ tools to transform the images, segment cells and extract quantitative
+ cellular descriptors.
Added: trunk/packages/R/r-bioc-ebimage/trunk/debian/copyright
===================================================================
--- trunk/packages/R/r-bioc-ebimage/trunk/debian/copyright (rev 0)
+++ trunk/packages/R/r-bioc-ebimage/trunk/debian/copyright 2014-09-11 09:25:05 UTC (rev 17988)
@@ -0,0 +1,30 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: EBImage
+Upstream-Contact: Andrzej Oles <andrzej.oles at embl.de>
+Source: http://www.bioconductor.org/packages/release/bioc/html/EBImage.html
+
+Files: *
+Copyright: © 2006-20124AGregoire Pau, Andrzej Oles, Mike Smith, Oleg Sklyar, Wolfgang Huber
+License: LGPL
+
+Files: debian/*
+Copyright: 2008-2009 Steffen Moeller <moeller at debian.org>
+License: LGPL
+
+License: LGPL
+ This program is free software: you can redistribute it and/or modify
+ it under the terms of the GNU Lesser General Public License as published by
+ the Free Software Foundation, either version 3 of the License, or
+ (at your option) any later version.
+ .
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+ .
+ You should have received a copy of the GNU Lesser General Public License
+ along with this program. If not, see <http://www.gnu.org/licenses/>.
+ .
+ On a Debian GNU/Linux system, the GNU Lesser GPL license version 3 is included
+ in the file ‘/usr/share/common-licenses/LGPL’.
+
Added: trunk/packages/R/r-bioc-ebimage/trunk/debian/docs
===================================================================
--- trunk/packages/R/r-bioc-ebimage/trunk/debian/docs (rev 0)
+++ trunk/packages/R/r-bioc-ebimage/trunk/debian/docs 2014-09-11 09:25:05 UTC (rev 17988)
@@ -0,0 +1,2 @@
+debian/README.test
+CHANGES
Added: trunk/packages/R/r-bioc-ebimage/trunk/debian/rules
===================================================================
--- trunk/packages/R/r-bioc-ebimage/trunk/debian/rules (rev 0)
+++ trunk/packages/R/r-bioc-ebimage/trunk/debian/rules 2014-09-11 09:25:05 UTC (rev 17988)
@@ -0,0 +1,15 @@
+#!/usr/bin/make -f
+
+export DEB_BUILD_HARDENING=1
+export DEB_BUILD_MAINT_OPTIONS = hardening=+all
+debRreposname=bioc
+include /usr/share/R/debian/r-cran.mk
+
+install/$(package)::
+ chmod 644 debian/$(package)/usr/lib/R/site-library/$(cranName)/doc/*
+
+clean::
+ find . -name "*.pdf" -o -name "*.tex" -o -name "*-eps" -o -name "*.log" -o -name "*.ps" -o -name "*.txt" | xargs -r chmod -x
+
+get-orig-source:
+ uscan --verbose --force-download --repack --compression xz
Property changes on: trunk/packages/R/r-bioc-ebimage/trunk/debian/rules
___________________________________________________________________
Added: svn:executable
+ *
Added: trunk/packages/R/r-bioc-ebimage/trunk/debian/source/format
===================================================================
--- trunk/packages/R/r-bioc-ebimage/trunk/debian/source/format (rev 0)
+++ trunk/packages/R/r-bioc-ebimage/trunk/debian/source/format 2014-09-11 09:25:05 UTC (rev 17988)
@@ -0,0 +1 @@
+3.0 (quilt)
Added: trunk/packages/R/r-bioc-ebimage/trunk/debian/upstream/metadata
===================================================================
--- trunk/packages/R/r-bioc-ebimage/trunk/debian/upstream/metadata (rev 0)
+++ trunk/packages/R/r-bioc-ebimage/trunk/debian/upstream/metadata 2014-09-11 09:25:05 UTC (rev 17988)
@@ -0,0 +1,16 @@
+Contact: Andrzej Oles <andrzej.oles at embl.de>
+Homepage: http://www.bioconductor.org/packages/bioc/html/qvalue.html
+Name: EBImage
+Reference:
+ article: Pau20100201
+ author: Gréire Pau1, Florian Fuchs, Oleg Sklyar, Michael Boutros, Wolfgang Huber
+ title: EBImage.an R package for image processing with applications to cellular phenotypes
+ journal: Bioinformatics
+ volume: 26
+ number: 7
+ pages: 979-981
+ doi: 10.1093/bioinformatics/btq046
+ PMID: 20338898
+ year: 2010
+ URL: http://bioinformatics.oxfordjournals.org/content/26/7/979.full
+ eprint: http://bioinformatics.oxfordjournals.org/content/26/7/979.full.pdf+html
Added: trunk/packages/R/r-bioc-ebimage/trunk/debian/watch
===================================================================
--- trunk/packages/R/r-bioc-ebimage/trunk/debian/watch (rev 0)
+++ trunk/packages/R/r-bioc-ebimage/trunk/debian/watch 2014-09-11 09:25:05 UTC (rev 17988)
@@ -0,0 +1,4 @@
+version=3
+opts=downloadurlmangle=s/\.\./packages\/release\/bioc/ \
+ http://www.bioconductor.org/packages/release/bioc/html/EBImage.html \
+ .*/EBImage_([\d\.]+)\.tar\.gz
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