[med-svn] r18007 - in trunk/packages/hmmer2/tags: . 2.3.2-8/debian
Laszlo Kajan
lkajan at moszumanska.debian.org
Sat Sep 13 19:43:08 UTC 2014
Author: lkajan
Date: 2014-09-13 19:43:07 +0000 (Sat, 13 Sep 2014)
New Revision: 18007
Added:
trunk/packages/hmmer2/tags/2.3.2-8/
trunk/packages/hmmer2/tags/2.3.2-8/debian/changelog
trunk/packages/hmmer2/tags/2.3.2-8/debian/control
trunk/packages/hmmer2/tags/2.3.2-8/debian/rules
trunk/packages/hmmer2/tags/2.3.2-8/debian/upstream/
Removed:
trunk/packages/hmmer2/tags/2.3.2-8/debian/changelog
trunk/packages/hmmer2/tags/2.3.2-8/debian/control
trunk/packages/hmmer2/tags/2.3.2-8/debian/rules
Log:
[svn-buildpackage] Tagging hmmer2 2.3.2-8
Deleted: trunk/packages/hmmer2/tags/2.3.2-8/debian/changelog
===================================================================
--- trunk/packages/hmmer2/trunk/debian/changelog 2014-09-13 19:19:24 UTC (rev 18004)
+++ trunk/packages/hmmer2/tags/2.3.2-8/debian/changelog 2014-09-13 19:43:07 UTC (rev 18007)
@@ -1,144 +0,0 @@
-hmmer2 (2.3.2-7) unstable; urgency=low
-
- * Team upload
- * debian/control:
- - Removed myself from the Uploaders.
- - Removed obsolete DM-Upload-Allowed field.
- - Use canonical VCS URLs.
- - Normalised using config-model-edit.
- - Build-depend on libperl4-corelibs-perl (Closes: #730921).
- * Conforms with Policy 3.9.5.
-
- -- Charles Plessy <plessy at debian.org> Sun, 01 Dec 2013 09:26:43 +0900
-
-hmmer2 (2.3.2-6) unstable; urgency=low
-
- [Charles Plessy]
- * Enabled upstream checks in debian/rules.
- * Documented how the package is tested in debian/README.Debian
- * Switched Debhelper to mode 7 (debian/compat, debian/control).
- * Gathered some metadata about upstream in debian/upstream-metadata.yaml.
- * Checked conformance with Policy 3.8.3 and incremented Standards-Version
- in debian/control to reflect it.
-
- [Laszlo Kajan]
- * Debhelper 8.
- * Policy version 3.9.3.
- * Renaming hmmer version 2 to hmmer2 in order to allow coexistence with
- hmmer (>=3) in wheezy.
- * Renaming binaries and man pages:
-
- hmmalign => hmm2align
- hmmbuild => hmm2build
- hmmcalibrate => hmm2calibrate
- hmmconvert => hmm2convert
- hmmemit => hmm2emit
- hmmfetch => hmm2fetch
- hmmindex => hmm2index
- hmmpfam => hmm2pfam
- hmmsearch => hmm2search
-
- hmmcalibrate-pvm => hmm2calibrate-pvm
- hmmpfam-pvm => hmm2pfam-pvm
- hmmsearch-pvm => hmm2search-pvm
-
- in order to allow coexistence with those from hmmer (>=3).
- (Closes: #680539)
- * debian/rules: remove binary without source documentation
- Userguide.pdf in get-orig-source target
-
- -- Laszlo Kajan <lkajan at rostlab.org> Mon, 09 Jul 2012 17:46:31 +0200
-
-hmmer (2.3.2-5) unstable; urgency=low
-
- * Changed the doc-base section according to the new policy.
- * debian/control:
- - Added myself as Uploader.
- - Increased priority to `optional'
- - Standards-Version: 3.8.0 (no changes needed)
-
- -- Charles Plessy <plessy at debian.org> Sun, 06 Jul 2008 23:49:23 +0900
-
-hmmer (2.3.2-4) unstable; urgency=low
-
- * Moved Homepage tag from long description to tags
- * Removed XB-Tag because it is actually not used by debtags
- * Added myself as Uploader
- * Standards-Version: 3.7.3 (no changes needed)
- * Added Vcs-Browser, Vcs-Svn
- * DM-Upload-Allowed: yes
-
- -- Andreas Tille <tille at debian.org> Tue, 26 Feb 2008 20:40:17 +0100
-
-hmmer (2.3.2-3) unstable; urgency=low
-
- * Updated hmmer homepage (Closes: #435396). Thanks to Charles Plessy;
- * Updated watch file;
- * Moved Matthew Vernon to Uploaders and set Maintainer to Debian-Med
- Packaging Team <debian-med-packaging at lists.alioth.debian.org>;
- * Downgraded biosquid to recommends.
-
- -- Nelson A. de Oliveira <naoliv at debian.org> Tue, 31 Jul 2007 15:15:23 -0300
-
-hmmer (2.3.2-2) unstable; urgency=medium
-
- * Changed my email address;
- * Changing priority to extra, instead optional (hmmer has a dependency on
- pvm and libpmv3 -- Policy 2.5);
- * Added tags on debian/control;
- * Medium urgency to get the package with the correct priority on Etch.
-
- -- Nelson A. de Oliveira <naoliv at debian.org> Wed, 6 Dec 2006 16:27:06 -0200
-
-hmmer (2.3.2-1) unstable; urgency=low
-
- * New upstream version (Closes: #261293);
- * Documentation is split in a new package (Closes: #233374, #175481);
- * "getseq" is not shipped anymore with hmmer, since it was renamed to
- "sfetch" (Closes: #197658);
- * New package hmmer-pvm, with PVM enabled binaries;
- * The package is again non-Debian native;
- * Using CDBS;
- * Using debhelper compatibility level 5;
- * Updated Standards-Version to 3.7.2;
- * Added doc-base and watch file;
- * Updated copyright file;
- * Added me as co-maintainer.
- From Matthew Vernon:
- "If you're keen to take hmmer, take it; I'm writing up my thesis at the
- moment, so my time for Debian is somewhat limited; I took on hmmer
- because it was orphaned at the time, and I wanted it to stay in the
- distribution."
-
- -- Nelson A. de Oliveira <naoliv at gmail.com> Tue, 15 Aug 2006 17:30:32 -0300
-
-hmmer (2.1.4) unstable; urgency=low
-
- * Change section to science
-
- -- Matthew Vernon <matthew at debian.org> Tue, 10 Apr 2001 02:51:17 +0100
-
-hmmer (2.1.3) unstable; urgency=low
-
- * Move from /usr/man to /usr/share/man (closes: #91171)
- * Move from /usr/doc to /usr/share/doc (closes: #91494)
-
- -- Matthew Vernon <matthew at debian.org> Mon, 09 Apr 2001 16:12:21 +0100
-
-hmmer (2.1.2) unstable; urgency=low
-
- * New maintainer
-
- -- Matthew Vernon <matthew at debian.org> Tue, 07 Dec 1999 16:30:35 +0000
-
-hmmer (2.1.1-1) unstable; urgency=low
-
- * New upstream version.
-
- -- John Lapeyre <lapeyre at physics.arizona.edu> Tue, 30 Mar 1999 16:50:05 -0700
-
-hmmer (2.0-1) unstable; urgency=low
-
- * Initial Release.
-
- -- John Lapeyre <lapeyre at physics.arizona.edu> Thu, 13 Aug 1998 21:48:53 -0700
Copied: trunk/packages/hmmer2/tags/2.3.2-8/debian/changelog (from rev 18005, trunk/packages/hmmer2/trunk/debian/changelog)
===================================================================
--- trunk/packages/hmmer2/tags/2.3.2-8/debian/changelog (rev 0)
+++ trunk/packages/hmmer2/tags/2.3.2-8/debian/changelog 2014-09-13 19:43:07 UTC (rev 18007)
@@ -0,0 +1,150 @@
+hmmer2 (2.3.2-8) unstable; urgency=medium
+
+ * Use autotools-dev for arm64.
+
+ -- Laszlo Kajan <lkajan at debian.org> Sat, 13 Sep 2014 21:21:54 +0200
+
+hmmer2 (2.3.2-7) unstable; urgency=low
+
+ * Team upload
+ * debian/control:
+ - Removed myself from the Uploaders.
+ - Removed obsolete DM-Upload-Allowed field.
+ - Use canonical VCS URLs.
+ - Normalised using config-model-edit.
+ - Build-depend on libperl4-corelibs-perl (Closes: #730921).
+ * Conforms with Policy 3.9.5.
+
+ -- Charles Plessy <plessy at debian.org> Sun, 01 Dec 2013 09:26:43 +0900
+
+hmmer2 (2.3.2-6) unstable; urgency=low
+
+ [Charles Plessy]
+ * Enabled upstream checks in debian/rules.
+ * Documented how the package is tested in debian/README.Debian
+ * Switched Debhelper to mode 7 (debian/compat, debian/control).
+ * Gathered some metadata about upstream in debian/upstream-metadata.yaml.
+ * Checked conformance with Policy 3.8.3 and incremented Standards-Version
+ in debian/control to reflect it.
+
+ [Laszlo Kajan]
+ * Debhelper 8.
+ * Policy version 3.9.3.
+ * Renaming hmmer version 2 to hmmer2 in order to allow coexistence with
+ hmmer (>=3) in wheezy.
+ * Renaming binaries and man pages:
+
+ hmmalign => hmm2align
+ hmmbuild => hmm2build
+ hmmcalibrate => hmm2calibrate
+ hmmconvert => hmm2convert
+ hmmemit => hmm2emit
+ hmmfetch => hmm2fetch
+ hmmindex => hmm2index
+ hmmpfam => hmm2pfam
+ hmmsearch => hmm2search
+
+ hmmcalibrate-pvm => hmm2calibrate-pvm
+ hmmpfam-pvm => hmm2pfam-pvm
+ hmmsearch-pvm => hmm2search-pvm
+
+ in order to allow coexistence with those from hmmer (>=3).
+ (Closes: #680539)
+ * debian/rules: remove binary without source documentation
+ Userguide.pdf in get-orig-source target
+
+ -- Laszlo Kajan <lkajan at rostlab.org> Mon, 09 Jul 2012 17:46:31 +0200
+
+hmmer (2.3.2-5) unstable; urgency=low
+
+ * Changed the doc-base section according to the new policy.
+ * debian/control:
+ - Added myself as Uploader.
+ - Increased priority to `optional'
+ - Standards-Version: 3.8.0 (no changes needed)
+
+ -- Charles Plessy <plessy at debian.org> Sun, 06 Jul 2008 23:49:23 +0900
+
+hmmer (2.3.2-4) unstable; urgency=low
+
+ * Moved Homepage tag from long description to tags
+ * Removed XB-Tag because it is actually not used by debtags
+ * Added myself as Uploader
+ * Standards-Version: 3.7.3 (no changes needed)
+ * Added Vcs-Browser, Vcs-Svn
+ * DM-Upload-Allowed: yes
+
+ -- Andreas Tille <tille at debian.org> Tue, 26 Feb 2008 20:40:17 +0100
+
+hmmer (2.3.2-3) unstable; urgency=low
+
+ * Updated hmmer homepage (Closes: #435396). Thanks to Charles Plessy;
+ * Updated watch file;
+ * Moved Matthew Vernon to Uploaders and set Maintainer to Debian-Med
+ Packaging Team <debian-med-packaging at lists.alioth.debian.org>;
+ * Downgraded biosquid to recommends.
+
+ -- Nelson A. de Oliveira <naoliv at debian.org> Tue, 31 Jul 2007 15:15:23 -0300
+
+hmmer (2.3.2-2) unstable; urgency=medium
+
+ * Changed my email address;
+ * Changing priority to extra, instead optional (hmmer has a dependency on
+ pvm and libpmv3 -- Policy 2.5);
+ * Added tags on debian/control;
+ * Medium urgency to get the package with the correct priority on Etch.
+
+ -- Nelson A. de Oliveira <naoliv at debian.org> Wed, 6 Dec 2006 16:27:06 -0200
+
+hmmer (2.3.2-1) unstable; urgency=low
+
+ * New upstream version (Closes: #261293);
+ * Documentation is split in a new package (Closes: #233374, #175481);
+ * "getseq" is not shipped anymore with hmmer, since it was renamed to
+ "sfetch" (Closes: #197658);
+ * New package hmmer-pvm, with PVM enabled binaries;
+ * The package is again non-Debian native;
+ * Using CDBS;
+ * Using debhelper compatibility level 5;
+ * Updated Standards-Version to 3.7.2;
+ * Added doc-base and watch file;
+ * Updated copyright file;
+ * Added me as co-maintainer.
+ From Matthew Vernon:
+ "If you're keen to take hmmer, take it; I'm writing up my thesis at the
+ moment, so my time for Debian is somewhat limited; I took on hmmer
+ because it was orphaned at the time, and I wanted it to stay in the
+ distribution."
+
+ -- Nelson A. de Oliveira <naoliv at gmail.com> Tue, 15 Aug 2006 17:30:32 -0300
+
+hmmer (2.1.4) unstable; urgency=low
+
+ * Change section to science
+
+ -- Matthew Vernon <matthew at debian.org> Tue, 10 Apr 2001 02:51:17 +0100
+
+hmmer (2.1.3) unstable; urgency=low
+
+ * Move from /usr/man to /usr/share/man (closes: #91171)
+ * Move from /usr/doc to /usr/share/doc (closes: #91494)
+
+ -- Matthew Vernon <matthew at debian.org> Mon, 09 Apr 2001 16:12:21 +0100
+
+hmmer (2.1.2) unstable; urgency=low
+
+ * New maintainer
+
+ -- Matthew Vernon <matthew at debian.org> Tue, 07 Dec 1999 16:30:35 +0000
+
+hmmer (2.1.1-1) unstable; urgency=low
+
+ * New upstream version.
+
+ -- John Lapeyre <lapeyre at physics.arizona.edu> Tue, 30 Mar 1999 16:50:05 -0700
+
+hmmer (2.0-1) unstable; urgency=low
+
+ * Initial Release.
+
+ -- John Lapeyre <lapeyre at physics.arizona.edu> Thu, 13 Aug 1998 21:48:53 -0700
Deleted: trunk/packages/hmmer2/tags/2.3.2-8/debian/control
===================================================================
--- trunk/packages/hmmer2/trunk/debian/control 2014-09-13 19:19:24 UTC (rev 18004)
+++ trunk/packages/hmmer2/tags/2.3.2-8/debian/control 2014-09-13 19:43:07 UTC (rev 18007)
@@ -1,70 +0,0 @@
-Source: hmmer2
-Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders: Matthew Vernon <matthew at debian.org>,
- Nelson A. de Oliveira <naoliv at debian.org>,
- Andreas Tille <tille at debian.org>,
- Laszlo Kajan <lkajan at rostlab.org>
-Section: science
-Priority: optional
-Build-Depends: debhelper (>= 8),
- pvm-dev,
- autotools-dev,
- libperl4-corelibs-perl
-Standards-Version: 3.9.5
-Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/hmmer2/trunk/
-Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/hmmer2/trunk/
-Homepage: http://hmmer.janelia.org/
-
-Package: hmmer2
-Architecture: any
-Depends: ${shlibs:Depends},
- ${misc:Depends}
-Recommends: biosquid
-Suggests: hmmer2-doc (>= ${source:Version}),
- hmmer2-pvm (>= ${binary:Version})
-Description: profile hidden Markov models for protein sequence analysis
- HMMER is an implementation of profile hidden Markov model methods for
- sensitive searches of biological sequence databases using multiple sequence
- alignments as queries.
- .
- Given a multiple sequence alignment as input, HMMER builds a statistical
- model called a "hidden Markov model" which can then be used as a query into
- a sequence database to find (and/or align) additional homologues of the
- sequence family.
-
-Package: hmmer2-pvm
-Architecture: any
-Depends: ${shlibs:Depends},
- ${misc:Depends},
- pvm
-Suggests: hmmer2-doc (>= ${binary:Version})
-Description: HMMER programs with PVM (Parallel Virtual Machine) support
- HMMER is an implementation of profile hidden Markov model methods for
- sensitive searches of biological sequence databases using multiple sequence
- alignments as queries.
- .
- Given a multiple sequence alignment as input, HMMER builds a statistical
- model called a "hidden Markov model" which can then be used as a query into
- a sequence database to find (and/or align) additional homologues of the
- sequence family.
- .
- This package contains HMMER programs compiled with PVM support.
-
-Package: hmmer2-doc
-Architecture: all
-Section: doc
-Depends: ${shlibs:Depends},
- ${misc:Depends}
-Recommends: hmmer2 (>= ${source:Version}),
- xpdf-reader | pdf-viewer
-Description: profile hidden Markov models for protein sequence analysis (docs)
- HMMER is an implementation of profile hidden Markov model methods for
- sensitive searches of biological sequence databases using multiple sequence
- alignments as queries.
- .
- Given a multiple sequence alignment as input, HMMER builds a statistical
- model called a "hidden Markov model" which can then be used as a query into
- a sequence database to find (and/or align) additional homologues of the
- sequence family.
- .
- This package contains documents and example files for the hmmer2 package.
Copied: trunk/packages/hmmer2/tags/2.3.2-8/debian/control (from rev 18005, trunk/packages/hmmer2/trunk/debian/control)
===================================================================
--- trunk/packages/hmmer2/tags/2.3.2-8/debian/control (rev 0)
+++ trunk/packages/hmmer2/tags/2.3.2-8/debian/control 2014-09-13 19:43:07 UTC (rev 18007)
@@ -0,0 +1,70 @@
+Source: hmmer2
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Matthew Vernon <matthew at debian.org>,
+ Nelson A. de Oliveira <naoliv at debian.org>,
+ Andreas Tille <tille at debian.org>,
+ Laszlo Kajan <lkajan at debian.org>
+Section: science
+Priority: optional
+Build-Depends: debhelper (>= 8),
+ pvm-dev,
+ autotools-dev,
+ libperl4-corelibs-perl
+Standards-Version: 3.9.5
+Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/hmmer2/trunk/
+Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/hmmer2/trunk/
+Homepage: http://hmmer.janelia.org/
+
+Package: hmmer2
+Architecture: any
+Depends: ${shlibs:Depends},
+ ${misc:Depends}
+Recommends: biosquid
+Suggests: hmmer2-doc (>= ${source:Version}),
+ hmmer2-pvm (>= ${binary:Version})
+Description: profile hidden Markov models for protein sequence analysis
+ HMMER is an implementation of profile hidden Markov model methods for
+ sensitive searches of biological sequence databases using multiple sequence
+ alignments as queries.
+ .
+ Given a multiple sequence alignment as input, HMMER builds a statistical
+ model called a "hidden Markov model" which can then be used as a query into
+ a sequence database to find (and/or align) additional homologues of the
+ sequence family.
+
+Package: hmmer2-pvm
+Architecture: any
+Depends: ${shlibs:Depends},
+ ${misc:Depends},
+ pvm
+Suggests: hmmer2-doc (>= ${binary:Version})
+Description: HMMER programs with PVM (Parallel Virtual Machine) support
+ HMMER is an implementation of profile hidden Markov model methods for
+ sensitive searches of biological sequence databases using multiple sequence
+ alignments as queries.
+ .
+ Given a multiple sequence alignment as input, HMMER builds a statistical
+ model called a "hidden Markov model" which can then be used as a query into
+ a sequence database to find (and/or align) additional homologues of the
+ sequence family.
+ .
+ This package contains HMMER programs compiled with PVM support.
+
+Package: hmmer2-doc
+Architecture: all
+Section: doc
+Depends: ${shlibs:Depends},
+ ${misc:Depends}
+Recommends: hmmer2 (>= ${source:Version}),
+ xpdf-reader | pdf-viewer
+Description: profile hidden Markov models for protein sequence analysis (docs)
+ HMMER is an implementation of profile hidden Markov model methods for
+ sensitive searches of biological sequence databases using multiple sequence
+ alignments as queries.
+ .
+ Given a multiple sequence alignment as input, HMMER builds a statistical
+ model called a "hidden Markov model" which can then be used as a query into
+ a sequence database to find (and/or align) additional homologues of the
+ sequence family.
+ .
+ This package contains documents and example files for the hmmer2 package.
Deleted: trunk/packages/hmmer2/tags/2.3.2-8/debian/rules
===================================================================
--- trunk/packages/hmmer2/trunk/debian/rules 2014-09-13 19:19:24 UTC (rev 18004)
+++ trunk/packages/hmmer2/tags/2.3.2-8/debian/rules 2014-09-13 19:43:07 UTC (rev 18007)
@@ -1,44 +0,0 @@
-#!/usr/bin/make -f
-# DH_VERBOSE=1
-
-export CPPFLAGS:=$(shell dpkg-buildflags --get CPPFLAGS)
-export CFLAGS:=$(shell dpkg-buildflags --get CFLAGS)
-export CXXFLAGS:=$(shell dpkg-buildflags --get CXXFLAGS)
-export LDFLAGS:=$(shell dpkg-buildflags --get LDFLAGS)
-
-# lkajan: The following violates point 4.9 of the Debian policy: "get-orig-source [...] may be invoked in any directory [...]" as uscan needs to find the watch file.
-.PHONY: get-orig-source
-get-orig-source:
- set -e; \
- t=$$(mktemp -d) || exit 1; \
- trap "rm -rf -- '$$t'" EXIT; \
- pwd; \
- uscan --no-conf --force-download --rename --destdir "$$t"; \
- ( cd "$$t"; \
- gunzip *.tar.gz; \
- tar --owner=root --group=root --mode=a+rX --delete -f *.tar --wildcards 'hmmer-*/Userguide.pdf'; \
- xz --best *.tar; \
- ); \
- mv $$t/*.tar.xz ./
-
-.PHONY: override_dh_auto_configure
-override_dh_auto_configure:
- dh_auto_configure -- --enable-threads --enable-lfs --enable-pvm
-
-.PHONY: override_dh_auto_install
-override_dh_auto_install:
- dh_auto_install -- prefix=$(CURDIR)/debian/tmp
- # lkajan: rename binaries and man pages like this: s/hmm/hmm2/ - except hmmer.1, rename that to hmmer2.1:
- rename 's/^hmm/hmm2/;' $(CURDIR)/debian/tmp/bin/*
- cd $(CURDIR)/debian/tmp/bin; rename 's/^hmm/hmm2/;' *
- cd $(CURDIR)/debian/tmp/share/man/man1; rename 's/^hmm/hmm2/;' *
- mv $(CURDIR)/debian/tmp/share/man/man1/hmm2er.1 $(CURDIR)/debian/tmp/share/man/man1/hmmer2.1
- # lkajan: resolve man page hypen issue:
- sed -i -e 's/--/\\-\\-/g;s/-\([[:alpha:]]\)\b/\\-\1/g;' $(CURDIR)/debian/tmp/share/man/man1/*
-
-.PHONY: override_dh_installchangelogs
-override_dh_installchangelogs:
- dh_installchangelogs -k 00README
-
-%:
- dh $@ --parallel
Copied: trunk/packages/hmmer2/tags/2.3.2-8/debian/rules (from rev 18005, trunk/packages/hmmer2/trunk/debian/rules)
===================================================================
--- trunk/packages/hmmer2/tags/2.3.2-8/debian/rules (rev 0)
+++ trunk/packages/hmmer2/tags/2.3.2-8/debian/rules 2014-09-13 19:43:07 UTC (rev 18007)
@@ -0,0 +1,44 @@
+#!/usr/bin/make -f
+# DH_VERBOSE=1
+
+export CPPFLAGS:=$(shell dpkg-buildflags --get CPPFLAGS)
+export CFLAGS:=$(shell dpkg-buildflags --get CFLAGS)
+export CXXFLAGS:=$(shell dpkg-buildflags --get CXXFLAGS)
+export LDFLAGS:=$(shell dpkg-buildflags --get LDFLAGS)
+
+# lkajan: The following violates point 4.9 of the Debian policy: "get-orig-source [...] may be invoked in any directory [...]" as uscan needs to find the watch file.
+.PHONY: get-orig-source
+get-orig-source:
+ set -e; \
+ t=$$(mktemp -d) || exit 1; \
+ trap "rm -rf -- '$$t'" EXIT; \
+ pwd; \
+ uscan --no-conf --force-download --rename --destdir "$$t"; \
+ ( cd "$$t"; \
+ gunzip *.tar.gz; \
+ tar --owner=root --group=root --mode=a+rX --delete -f *.tar --wildcards 'hmmer-*/Userguide.pdf'; \
+ xz --best *.tar; \
+ ); \
+ mv $$t/*.tar.xz ./
+
+.PHONY: override_dh_auto_configure
+override_dh_auto_configure:
+ dh_auto_configure -- --enable-threads --enable-lfs --enable-pvm
+
+.PHONY: override_dh_auto_install
+override_dh_auto_install:
+ dh_auto_install -- prefix=$(CURDIR)/debian/tmp
+ # lkajan: rename binaries and man pages like this: s/hmm/hmm2/ - except hmmer.1, rename that to hmmer2.1:
+ rename 's/^hmm/hmm2/;' $(CURDIR)/debian/tmp/bin/*
+ cd $(CURDIR)/debian/tmp/bin; rename 's/^hmm/hmm2/;' *
+ cd $(CURDIR)/debian/tmp/share/man/man1; rename 's/^hmm/hmm2/;' *
+ mv $(CURDIR)/debian/tmp/share/man/man1/hmm2er.1 $(CURDIR)/debian/tmp/share/man/man1/hmmer2.1
+ # lkajan: resolve man page hypen issue:
+ sed -i -e 's/--/\\-\\-/g;s/-\([[:alpha:]]\)\b/\\-\1/g;' $(CURDIR)/debian/tmp/share/man/man1/*
+
+.PHONY: override_dh_installchangelogs
+override_dh_installchangelogs:
+ dh_installchangelogs -k 00README
+
+%:
+ dh $@ --parallel --with autotools-dev
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