[med-svn] r18026 - in trunk/packages/R: . r-cran-vioplot r-cran-vioplot/trunk r-cran-vioplot/trunk/debian r-cran-vioplot/trunk/debian/source r-cran-vioplot/trunk/debian/upstream

Mon Sep 15 12:20:48 UTC 2014

Author: moeller
Date: 2014-09-15 12:20:48 +0000 (Mon, 15 Sep 2014)
New Revision: 18026

Added:
   trunk/packages/R/r-cran-vioplot/
   trunk/packages/R/r-cran-vioplot/trunk/
   trunk/packages/R/r-cran-vioplot/trunk/debian/
   trunk/packages/R/r-cran-vioplot/trunk/debian/README.test
   trunk/packages/R/r-cran-vioplot/trunk/debian/changelog
   trunk/packages/R/r-cran-vioplot/trunk/debian/compat
   trunk/packages/R/r-cran-vioplot/trunk/debian/control
   trunk/packages/R/r-cran-vioplot/trunk/debian/copyright
   trunk/packages/R/r-cran-vioplot/trunk/debian/docs
   trunk/packages/R/r-cran-vioplot/trunk/debian/rules
   trunk/packages/R/r-cran-vioplot/trunk/debian/source/
   trunk/packages/R/r-cran-vioplot/trunk/debian/source/format
   trunk/packages/R/r-cran-vioplot/trunk/debian/upstream/
   trunk/packages/R/r-cran-vioplot/trunk/debian/upstream/metadata
   trunk/packages/R/r-cran-vioplot/trunk/debian/watch
Log:
Vioplots - providing violin plots

The package seeks a maintainer for its upload. It was last
updated in 2005, so not too much effort is expected.

W: r-cran-vioplot: new-package-should-close-itp-bug
W: r-cran-vioplot: extra-license-file usr/lib/R/site-library/vioplot/LICENSE




Property changes on: trunk/packages/R/r-cran-vioplot/trunk/debian
___________________________________________________________________
Added: mergeWithUpstream
   + 1

Added: trunk/packages/R/r-cran-vioplot/trunk/debian/README.test
===================================================================

--- trunk/packages/R/r-cran-vioplot/trunk/debian/README.test	                        (rev 0)
+++ trunk/packages/R/r-cran-vioplot/trunk/debian/README.test	2014-09-15 12:20:48 UTC (rev 18026)
@@ -0,0 +1,5 @@
+Notes on how this package can be tested.
+========================================
+
+This package can be tested by loading it into R with the command
+'library(vioplot)' in order to confirm its integrity.

Added: trunk/packages/R/r-cran-vioplot/trunk/debian/changelog
===================================================================
--- trunk/packages/R/r-cran-vioplot/trunk/debian/changelog	                        (rev 0)
+++ trunk/packages/R/r-cran-vioplot/trunk/debian/changelog	2014-09-15 12:20:48 UTC (rev 18026)
@@ -0,0 +1,5 @@
+r-cran-vioplot (0.2-1) UNRELEASED; urgency=low
+
+  * Initial release.
+
+ -- Steffen Moeller <moeller at debian.org>  Mon, 15 Sep 2014 13:57:49 +0200

Added: trunk/packages/R/r-cran-vioplot/trunk/debian/compat
===================================================================
--- trunk/packages/R/r-cran-vioplot/trunk/debian/compat	                        (rev 0)
+++ trunk/packages/R/r-cran-vioplot/trunk/debian/compat	2014-09-15 12:20:48 UTC (rev 18026)
@@ -0,0 +1 @@
+9

Added: trunk/packages/R/r-cran-vioplot/trunk/debian/control
===================================================================
--- trunk/packages/R/r-cran-vioplot/trunk/debian/control	                        (rev 0)
+++ trunk/packages/R/r-cran-vioplot/trunk/debian/control	2014-09-15 12:20:48 UTC (rev 18026)
@@ -0,0 +1,19 @@
+Source: r-cran-vioplot
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Steffen Moeller <moeller at debian.org>
+Section: gnu-r
+Priority: optional
+Build-Depends: debhelper (>= 9),
+               cdbs,
+               r-base-dev (>= 3.0)
+Standards-Version: 3.9.5
+Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-cran-vioplot/trunk/
+Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-cran-vioplot/trunk/
+Homepage: http://cran.r-project.org/web/packages/vioplot/index.html
+
+Package: r-cran-vioplot
+Architecture: all
+Depends: ${R:Depends},
+         ${shlib:Depends}
+Description: GNU R toolbox for violin plots
+ A violin plot is a combination of a box plot and a kernel density plot.

Added: trunk/packages/R/r-cran-vioplot/trunk/debian/copyright
===================================================================
--- trunk/packages/R/r-cran-vioplot/trunk/debian/copyright	                        (rev 0)
+++ trunk/packages/R/r-cran-vioplot/trunk/debian/copyright	2014-09-15 12:20:48 UTC (rev 18026)
@@ -0,0 +1,37 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: vioplot
+Upstream-Contact: Daniel Adler  <adler at uni-goettingen.de>
+Source: http://cran.r-project.org/web/packages/vioplot/index.html
+
+Files: *
+Copyright: © 20065 Daniel Adler  <adler at uni-goettingen.de>
+License: BSD-3-Clause
+
+Files: debian/*
+Copyright: 2014 Steffen Moeller <moeller at debian.org>
+License: BSD-3-Clause
+
+License: BSD-3-Clause
+ Redistribution and use in source and binary forms, with or without
+ modification, are permitted provided that the following conditions
+ are met:
+ 1. Redistributions of source code must retain the above copyright
+    notice, this list of conditions and the following disclaimer.
+ 2. Redistributions in binary form must reproduce the above copyright
+    notice, this list of conditions and the following disclaimer in the
+    documentation and/or other materials provided with the distribution.
+ 3. Neither the name of the University nor the names of its contributors
+    may be used to endorse or promote products derived from this software
+    without specific prior written permission.
+ .
+ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
+ ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT 
+ LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR 
+ A PARTICULAR PURPOSE ARE DISCLAIMED.  IN NO EVENT SHALL THE HOLDERS OR
+ CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, 
+ EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, 
+ PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR 
+ PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF 
+ LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING 
+ NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS 
+ SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Added: trunk/packages/R/r-cran-vioplot/trunk/debian/docs
===================================================================
Added: trunk/packages/R/r-cran-vioplot/trunk/debian/rules
===================================================================
--- trunk/packages/R/r-cran-vioplot/trunk/debian/rules	                        (rev 0)
+++ trunk/packages/R/r-cran-vioplot/trunk/debian/rules	2014-09-15 12:20:48 UTC (rev 18026)
@@ -0,0 +1,12 @@
+#!/usr/bin/make -f
+
+export DEB_BUILD_HARDENING=1
+export DEB_BUILD_MAINT_OPTIONS = hardening=+all
+debRreposname=cran
+include /usr/share/R/debian/r-cran.mk
+
+clean::
+	find . -name "*.pdf" -o -name "*.tex" -o -name "*-eps" -o -name "*.log" -o -name "*.ps" -o -name "*.txt" | xargs -r chmod -x
+
+get-orig-source:
+	uscan --verbose --force-download --repack --compression xz


Property changes on: trunk/packages/R/r-cran-vioplot/trunk/debian/rules
___________________________________________________________________
Added: svn:executable
   + *

Added: trunk/packages/R/r-cran-vioplot/trunk/debian/source/format
===================================================================
--- trunk/packages/R/r-cran-vioplot/trunk/debian/source/format	                        (rev 0)
+++ trunk/packages/R/r-cran-vioplot/trunk/debian/source/format	2014-09-15 12:20:48 UTC (rev 18026)
@@ -0,0 +1 @@
+3.0 (quilt)

Added: trunk/packages/R/r-cran-vioplot/trunk/debian/upstream/metadata
===================================================================
--- trunk/packages/R/r-cran-vioplot/trunk/debian/upstream/metadata	                        (rev 0)
+++ trunk/packages/R/r-cran-vioplot/trunk/debian/upstream/metadata	2014-09-15 12:20:48 UTC (rev 18026)
@@ -0,0 +1,15 @@
+Contact: Andrzej Oles <andrzej.oles at embl.de> 
+Name: EBImage
+Reference:
+ article: Pau20100201
+ author: Grégoire Pau and Florian Fuchs and Oleg Sklyar and Michael Boutros and Wolfgang Huber
+ title: EBImage.an R package for image processing with applications to cellular phenotypes
+ journal: Bioinformatics
+ volume: 26
+ number: 7
+ pages: 979-981
+ doi: 10.1093/bioinformatics/btq046
+ PMID: 20338898
+ year: 2010
+ URL: http://bioinformatics.oxfordjournals.org/content/26/7/979.full
+ eprint: http://bioinformatics.oxfordjournals.org/content/26/7/979.full.pdf+html

Added: trunk/packages/R/r-cran-vioplot/trunk/debian/watch
===================================================================
--- trunk/packages/R/r-cran-vioplot/trunk/debian/watch	                        (rev 0)
+++ trunk/packages/R/r-cran-vioplot/trunk/debian/watch	2014-09-15 12:20:48 UTC (rev 18026)
@@ -0,0 +1,3 @@
+version=3
+http://cran.r-project.org/src/contrib/vioplot_([-0-9\.]*)\.tar\.gz
+


