[med-svn] r18054 - in trunk/packages/R/r-bioc-biovizbase/trunk/debian: . tests

[Andreas Tille]

Author: tille
Date: 2014-09-17 09:44:33 +0000 (Wed, 17 Sep 2014)
New Revision: 18054

Added:
   trunk/packages/R/r-bioc-biovizbase/trunk/debian/examples
   trunk/packages/R/r-bioc-biovizbase/trunk/debian/tests/
   trunk/packages/R/r-bioc-biovizbase/trunk/debian/tests/control
   trunk/packages/R/r-bioc-biovizbase/trunk/debian/tests/run-unit-test
Modified:
   trunk/packages/R/r-bioc-biovizbase/trunk/debian/README.test
   trunk/packages/R/r-bioc-biovizbase/trunk/debian/docs
Log:
Add autopkgtest based on vignettes


Modified: trunk/packages/R/r-bioc-biovizbase/trunk/debian/README.test
===================================================================
--- trunk/packages/R/r-bioc-biovizbase/trunk/debian/README.test	2014-09-17 09:19:19 UTC (rev 18053)
+++ trunk/packages/R/r-bioc-biovizbase/trunk/debian/README.test	2014-09-17 09:44:33 UTC (rev 18054)
@@ -1,5 +1,8 @@
 Notes on how this package can be tested.
 ────────────────────────────────────────
 
-This package can be tested by loading it into R with the command
-‘library(biovizBase)’ in order to confirm its integrity.
+To run the unit tests provided by the package you can do
+
+   sh  run-unit-test
+
+in this directory.

Modified: trunk/packages/R/r-bioc-biovizbase/trunk/debian/docs
===================================================================
--- trunk/packages/R/r-bioc-biovizbase/trunk/debian/docs	2014-09-17 09:19:19 UTC (rev 18053)
+++ trunk/packages/R/r-bioc-biovizbase/trunk/debian/docs	2014-09-17 09:44:33 UTC (rev 18054)
@@ -1 +1,2 @@
 debian/README.test
+debian/tests/run-unit-test

Added: trunk/packages/R/r-bioc-biovizbase/trunk/debian/examples
===================================================================
--- trunk/packages/R/r-bioc-biovizbase/trunk/debian/examples	                        (rev 0)
+++ trunk/packages/R/r-bioc-biovizbase/trunk/debian/examples	2014-09-17 09:44:33 UTC (rev 18054)
@@ -0,0 +1 @@
+vignettes

Added: trunk/packages/R/r-bioc-biovizbase/trunk/debian/tests/control
===================================================================
--- trunk/packages/R/r-bioc-biovizbase/trunk/debian/tests/control	                        (rev 0)
+++ trunk/packages/R/r-bioc-biovizbase/trunk/debian/tests/control	2014-09-17 09:44:33 UTC (rev 18054)
@@ -0,0 +1,3 @@
+Tests: run-unit-test
+Depends: @
+Restrictions: allow-stderr

Added: trunk/packages/R/r-bioc-biovizbase/trunk/debian/tests/run-unit-test
===================================================================
--- trunk/packages/R/r-bioc-biovizbase/trunk/debian/tests/run-unit-test	                        (rev 0)
+++ trunk/packages/R/r-bioc-biovizbase/trunk/debian/tests/run-unit-test	2014-09-17 09:44:33 UTC (rev 18054)
@@ -0,0 +1,18 @@
+#!/bin/sh -e
+oname=biovizBase
+pkg=r-bioc-`echo $oname | tr [A-Z] [a-z]`
+
+if [ "$ADTTMP" = "" ] ; then
+  ADTTMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
+fi
+cd $ADTTMP
+cp /usr/share/doc/$pkg/examples/vignettes/* $ADTTMP
+find . -name "*.gz" -exec gunzip \{\} \;
+for rnw in `ls *.[rRS]nw` ; do
+rfile=`echo $rnw | sed 's/\.[rRS]nw/.R/'`
+R --no-save <<EOT
+  Stangle("$rnw")
+  source("$rfile", echo=TRUE)
+EOT
+done
+rm -rf *