[med-svn] r18067 - trunk/packages/infernal/trunk/debian

[Andreas Tille]

Author: tille
Date: 2014-09-18 12:21:26 +0000 (Thu, 18 Sep 2014)
New Revision: 18067

Modified:
   trunk/packages/infernal/trunk/debian/README.Debian
   trunk/packages/infernal/trunk/debian/README.source
   trunk/packages/infernal/trunk/debian/changelog
   trunk/packages/infernal/trunk/debian/copyright
   trunk/packages/infernal/trunk/debian/rules
Log:
Removing some outdated stuff in docs and unneeded targets in rules, more DEP5 fixes


Modified: trunk/packages/infernal/trunk/debian/README.Debian
===================================================================
--- trunk/packages/infernal/trunk/debian/README.Debian	2014-09-18 10:51:23 UTC (rev 18066)
+++ trunk/packages/infernal/trunk/debian/README.Debian	2014-09-18 12:21:26 UTC (rev 18067)
@@ -8,12 +8,6 @@
 to leave that documentation out and users are requested to address the
 web pages of the upstream developers in this matter.
 
-The directory "squid" that is distributed with the source of infernal
-differs slightly from the biosquid Debian package. Upstream was contacted
-about this redundancy to his own software and the answer was to please
-leave with that situation since the two are not safely substituted for
-another.
-
 Infernal offers to be compiled for LAM-MPI. Please contact us if there is
 respective demand. Also, the Large File Support (LFS) was not activated,
 which may be of concern for large screening projects on files larger

Modified: trunk/packages/infernal/trunk/debian/README.source
===================================================================
--- trunk/packages/infernal/trunk/debian/README.source	2014-09-18 10:51:23 UTC (rev 18066)
+++ trunk/packages/infernal/trunk/debian/README.source	2014-09-18 12:21:26 UTC (rev 18067)
@@ -17,7 +17,4 @@
 not be ultimately required to be shipped as PDFs. This is however
 tolerated.
 
-The redundancy of the squid folder with the Debian package
-biosquid needs to remain until upstream resolves the conflicts.
-
 -- Steffen Moeller   Sun, 20 Jan 2008 23:05:22 +0100

Modified: trunk/packages/infernal/trunk/debian/changelog
===================================================================
--- trunk/packages/infernal/trunk/debian/changelog	2014-09-18 10:51:23 UTC (rev 18066)
+++ trunk/packages/infernal/trunk/debian/changelog	2014-09-18 12:21:26 UTC (rev 18067)
@@ -2,6 +2,9 @@
 
   * Re-enable i386 by checking availability of sse2
   * d/copyright: Deleted unneeded paragraphs
+  * d/rules: drop redundant targets
+  * d/README*: drop pararaphs about squid which is not part of the
+    source any more
 
  -- Andreas Tille <tille at debian.org>  Thu, 18 Sep 2014 10:00:12 +0200
 

Modified: trunk/packages/infernal/trunk/debian/copyright
===================================================================
--- trunk/packages/infernal/trunk/debian/copyright	2014-09-18 10:51:23 UTC (rev 18066)
+++ trunk/packages/infernal/trunk/debian/copyright	2014-09-18 12:21:26 UTC (rev 18067)
@@ -22,9 +22,14 @@
 
 Files: debian/*
 Copyright: © 2007-2008 Steffen Moeller <moeller at debian.org>
-           © 2009-2013 Andreas Tille <tille at debian.org>
+           © 2009-2014 Andreas Tille <tille at debian.org>
 License: GPL-3
 
+Files: easel/*
+Copyright: © 2004-2014 Sean R. Eddy
+           © 2006-2008 Howard Hughes Medical Institute
+License: BSD-Easel
+
 Files: easel/esl_sse.c easel/esl_vmx.c
 Copyright: © 2007 Julien Pommier
            © 1992 Stephen Moshier
@@ -39,12 +44,7 @@
 Copyright: © 1986, 1993, 1995 by University of Toronto
 License: BSD-Easel
 
-Files: easel/*
-Copyright: © 2004-2008 Sean R. Eddy
-           © 2006-2008 Howard Hughes Medical Institute
 License: BSD-Easel
-
-License: BSD-Easel
  @EASEL_COPYRIGHT@
  .
  The Easel library is freely modifiable and redistributable under the

Modified: trunk/packages/infernal/trunk/debian/rules
===================================================================
--- trunk/packages/infernal/trunk/debian/rules	2014-09-18 10:51:23 UTC (rev 18066)
+++ trunk/packages/infernal/trunk/debian/rules	2014-09-18 12:21:26 UTC (rev 18067)
@@ -26,11 +26,3 @@
 		ln -s cmalign $(CURDIR)/debian/infernal/usr/bin/$$bin ; \
 	    fi ; \
 	done
-
-override_dh_builddeb:
-	dh_builddeb -- -Z xz
-
-get-orig-source:
-	VERSION=`dpkg-parsechangelog | grep Ver | cut -d' ' -f2 | cut -d- -f1` ; \
-	URL="ftp://selab.janelia.org/pub/software/infernal/infernal-$${VERSION}.tar.gz"; \
-	ln -s infernal-$${VERSION}.tar.gz infernal_$${VERSION}.orig.tar.gz