[med-svn] [htslib] 01/01: htslib (1.1-1) unstable; urgency=medium
Charles Plessy
plessy at moszumanska.debian.org
Wed Sep 24 12:34:58 UTC 2014
This is an automated email from the git hooks/post-receive script.
plessy pushed a commit to branch debian/build/unstable/amd64
in repository htslib.
commit 82b85af2b9d5f09c58d23033b8641dfff6af34e7
Author: Charles Plessy <plessy at debian.org>
Date: Wed Sep 24 21:32:44 2014 +0900
htslib (1.1-1) unstable; urgency=medium
1357fbd Merge tag '1.1' into debian/unstable
87549cd Updated symbols file. One symbol is missing.
873ea9b Removed orphan paragraph in machine-readable copyright file.
49de2b9 Allow parallel build.
7fe3bb5 Normalise control file (VCS-Browser, Pre-Depends).
0e5e9e6 Conforms to Policy 3.9.6.
-- Charles Plessy <plessy at debian.org> Wed, 24 Sep 2014 21:24:11 +0900
---
log | 571 +++++++++++++++++++++++++++++++++++---------------------------------
1 file changed, 291 insertions(+), 280 deletions(-)
diff --git a/log b/log
index 62cd2d2..34adffc 100644
--- a/log
+++ b/log
@@ -1,20 +1,20 @@
sbuild (Debian sbuild) 0.64.1 (13 Oct 2013) on aqwa.igloo
╔══════════════════════════════════════════════════════════════════════════════╗
-║ htslib 1.0-2 (amd64) 16 sept. 2014 20:35 ║
+║ htslib 1.1-1 (amd64) 24 sept. 2014 21:27 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: htslib
-Version: 1.0-2
-Source Version: 1.0-2
+Version: 1.1-1
+Source Version: 1.1-1
Distribution: unstable
Machine Architecture: amd64
Host Architecture: amd64
Build Architecture: amd64
-I: NOTICE: Log filtering will replace 'build/htslib-HoJijP/htslib-1.0' with '«PKGBUILDDIR»'
-I: NOTICE: Log filtering will replace 'build/htslib-HoJijP' with '«BUILDDIR»'
-I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/unstable-amd64-sbuild-53d58173-3a11-46dd-9b64-be5096ec1397' with '«CHROOT»'
+I: NOTICE: Log filtering will replace 'build/htslib-5gwd1t/htslib-1.1' with '«PKGBUILDDIR»'
+I: NOTICE: Log filtering will replace 'build/htslib-5gwd1t' with '«BUILDDIR»'
+I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/unstable-amd64-sbuild-01d18392-263d-4179-86e4-09a8ce3256d9' with '«CHROOT»'
┌──────────────────────────────────────────────────────────────────────────────┐
│ Update chroot │
@@ -24,7 +24,7 @@ Hit http://ftp.jp.debian.org unstable InRelease
Get:1 http://ftp.jp.debian.org unstable/main Sources/DiffIndex [7876 B]
Get:2 http://ftp.jp.debian.org unstable/main amd64 Packages/DiffIndex [7876 B]
Get:3 http://ftp.jp.debian.org unstable/main Translation-en/DiffIndex [7876 B]
-Fetched 23.6 kB in 2s (11.2 kB/s)
+Fetched 23.6 kB in 1s (13.3 kB/s)
Reading package lists...
Reading package lists...
Building dependency tree...
@@ -39,14 +39,14 @@ Reading state information...
Local sources
─────────────
-htslib_1.0-2.dsc exists in .; copying to chroot
+htslib_1.1-1.dsc exists in .; copying to chroot
Check arch
──────────
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
-dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-Xp7dfL/apt_archive/sbuild-build-depends-core-dummy.deb'.
+dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-qqvBHY/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Reading package lists...
@@ -62,7 +62,7 @@ The following NEW packages will be installed:
sbuild-build-depends-core-dummy
debconf: delaying package configuration, since apt-utils is not installed
0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
-Need to get 0 B/820 B of archives.
+Need to get 0 B/822 B of archives.
After this operation, 0 B of additional disk space will be used.
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 11169 files and directories currently installed.)
@@ -71,7 +71,7 @@ Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit-utils, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.9.1), g++ (>= 4:4.9.1), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), dh-exec, zlib1g-dev
Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit-utils, tar, util-linux, libc6-dev, gcc (>= 4:4.9.1), g++ (>= 4:4.9.1), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), dh-exec, zlib1g-dev
-dpkg-deb: building package `sbuild-build-depends-htslib-dummy' in `/«BUILDDIR»/resolver-hNMZZt/apt_archive/sbuild-build-depends-htslib-dummy.deb'.
+dpkg-deb: building package `sbuild-build-depends-htslib-dummy' in `/«BUILDDIR»/resolver-NVoury/apt_archive/sbuild-build-depends-htslib-dummy.deb'.
OK
Reading package lists...
@@ -92,20 +92,24 @@ Suggested packages:
libmail-box-perl
Recommended packages:
curl wget lynx-cur autopoint libasprintf-dev libgettextpo-dev
- libglib2.0-data shared-mime-info xml-core libmail-sendmail-perl
+ libglib2.0-data shared-mime-info xdg-user-dirs xml-core
+ libmail-sendmail-perl
The following NEW packages will be installed:
bsdmainutils debhelper dh-exec file gettext gettext-base groff-base
intltool-debian libasprintf0c2 libcroco3 libffi6 libglib2.0-0 libmagic1
libpipeline1 libunistring0 libxml2 man-db po-debconf
sbuild-build-depends-htslib-dummy zlib1g-dev
-debconf: delaying package configuration, since apt-utils is not installed
0 upgraded, 20 newly installed, 0 to remove and 0 not upgraded.
-Need to get 0 B/9043 kB of archives.
-After this operation, 27.5 MB of additional disk space will be used.
+Need to get 3484 kB/9117 kB of archives.
+After this operation, 27.1 MB of additional disk space will be used.
+Get:1 http://ftp.jp.debian.org/debian/ unstable/main man-db amd64 2.7.0.1-1 [999 kB]
+Get:2 http://ftp.jp.debian.org/debian/ unstable/main libglib2.0-0 amd64 2.42.0-1 [2485 kB]
+debconf: delaying package configuration, since apt-utils is not installed
+Fetched 3484 kB in 11s (305 kB/s)
Selecting previously unselected package libpipeline1:amd64.
(Reading database ... 11169 files and directories currently installed.)
-Preparing to unpack .../libpipeline1_1.3.0-1_amd64.deb ...
-Unpacking libpipeline1:amd64 (1.3.0-1) ...
+Preparing to unpack .../libpipeline1_1.3.1-1_amd64.deb ...
+Unpacking libpipeline1:amd64 (1.3.1-1) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../groff-base_1.22.2-8_amd64.deb ...
Unpacking groff-base (1.22.2-8) ...
@@ -113,8 +117,8 @@ Selecting previously unselected package bsdmainutils.
Preparing to unpack .../bsdmainutils_9.0.5_amd64.deb ...
Unpacking bsdmainutils (9.0.5) ...
Selecting previously unselected package man-db.
-Preparing to unpack .../man-db_2.6.7.1-1_amd64.deb ...
-Unpacking man-db (2.6.7.1-1) ...
+Preparing to unpack .../man-db_2.7.0.1-1_amd64.deb ...
+Unpacking man-db (2.7.0.1-1) ...
Selecting previously unselected package libasprintf0c2:amd64.
Preparing to unpack .../libasprintf0c2_0.19.2-2_amd64.deb ...
Unpacking libasprintf0c2:amd64 (0.19.2-2) ...
@@ -128,8 +132,8 @@ Selecting previously unselected package libffi6:amd64.
Preparing to unpack .../libffi6_3.1-2_amd64.deb ...
Unpacking libffi6:amd64 (3.1-2) ...
Selecting previously unselected package libglib2.0-0:amd64.
-Preparing to unpack .../libglib2.0-0_2.40.0-5_amd64.deb ...
-Unpacking libglib2.0-0:amd64 (2.40.0-5) ...
+Preparing to unpack .../libglib2.0-0_2.42.0-1_amd64.deb ...
+Unpacking libglib2.0-0:amd64 (2.42.0-1) ...
Selecting previously unselected package libcroco3:amd64.
Preparing to unpack .../libcroco3_0.6.8-3_amd64.deb ...
Unpacking libcroco3:amd64 (0.6.8-3) ...
@@ -163,18 +167,18 @@ Unpacking dh-exec (0.13) ...
Selecting previously unselected package sbuild-build-depends-htslib-dummy.
Preparing to unpack .../sbuild-build-depends-htslib-dummy.deb ...
Unpacking sbuild-build-depends-htslib-dummy (0.invalid.0) ...
-Setting up libpipeline1:amd64 (1.3.0-1) ...
+Setting up libpipeline1:amd64 (1.3.1-1) ...
Setting up groff-base (1.22.2-8) ...
Setting up bsdmainutils (9.0.5) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
-Setting up man-db (2.6.7.1-1) ...
+Setting up man-db (2.7.0.1-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libasprintf0c2:amd64 (0.19.2-2) ...
Setting up libmagic1:amd64 (1:5.19-2) ...
Setting up libxml2:amd64 (2.9.1+dfsg1-4) ...
Setting up libffi6:amd64 (3.1-2) ...
-Setting up libglib2.0-0:amd64 (2.40.0-5) ...
+Setting up libglib2.0-0:amd64 (2.42.0-1) ...
No schema files found: doing nothing.
Setting up libcroco3:amd64 (0.6.8-3) ...
Setting up libunistring0:amd64 (0.9.3-5.2) ...
@@ -194,8 +198,8 @@ Processing triggers for libc-bin (2.19-11) ...
└──────────────────────────────────────────────────────────────────────────────┘
Kernel: Linux 3.16-1-amd64 amd64 (x86_64)
-Toolchain package versions: binutils_2.24.51.20140903-1 dpkg-dev_1.17.13 g++-4.9_4.9.1-14 gcc-4.9_4.9.1-14 libc6-dev_2.19-11 libstdc++-4.9-dev_4.9.1-14 libstdc++6_4.9.1-14 linux-libc-dev_3.16.2-3
-Package versions: apt_1.0.8 base-files_7.5 base-passwd_3.5.36 bash_4.3-9 binutils_2.24.51.20140903-1 bsdmainutils_9.0.5 bsdutils_1:2.20.1-5.8 build-essential_11.7 bzip2_1.0.6-7 coreutils_8.23-2 cpp_4:4.9.1-4 cpp-4.9_4.9.1-14 dash_0.5.7-4 debconf_1.5.53 debconf-i18n_1.5.53 debfoster_2.7-2 debhelper_9.20140817 debian-archive-keyring_2014.1 debianutils_4.4 dh-exec_0.13 diffutils_1:3.3-1 dpkg_1.17.13 dpkg-dev_1.17.13 e2fslibs_1.42.12-1 e2fsprogs_1.42.12-1 eatmydata_26-2 fakeroot_1.20.1-1.1 f [...]
+Toolchain package versions: binutils_2.24.51.20140918-1 dpkg-dev_1.17.13 g++-4.9_4.9.1-15 gcc-4.9_4.9.1-15 libc6-dev_2.19-11 libstdc++-4.9-dev_4.9.1-15 libstdc++6_4.9.1-15 linux-libc-dev_3.16.3-2
+Package versions: apt_1.0.9.1 base-files_7.5 base-passwd_3.5.36 bash_4.3-9 binutils_2.24.51.20140918-1 bsdmainutils_9.0.5 bsdutils_1:2.20.1-5.8 build-essential_11.7 bzip2_1.0.6-7 coreutils_8.23-2 cpp_4:4.9.1-4 cpp-4.9_4.9.1-15 dash_0.5.7-4 debconf_1.5.53 debconf-i18n_1.5.53 debfoster_2.7-2 debhelper_9.20140817 debian-archive-keyring_2014.1 debianutils_4.4 dh-exec_0.13 diffutils_1:3.3-1 dpkg_1.17.13 dpkg-dev_1.17.13 e2fslibs_1.42.12-1 e2fsprogs_1.42.12-1 eatmydata_26-2 fakeroot_1.20.1-1.1 [...]
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -205,10 +209,10 @@ Package versions: apt_1.0.8 base-files_7.5 base-passwd_3.5.36 bash_4.3-9 binutil
Unpack source
─────────────
-dpkg-source: warning: extracting unsigned source package (htslib_1.0-2.dsc)
-dpkg-source: info: extracting htslib in htslib-1.0
-dpkg-source: info: unpacking htslib_1.0.orig.tar.gz
-dpkg-source: info: unpacking htslib_1.0-2.debian.tar.xz
+dpkg-source: warning: extracting unsigned source package (htslib_1.1-1.dsc)
+dpkg-source: info: extracting htslib in htslib-1.1
+dpkg-source: info: unpacking htslib_1.1.orig.tar.gz
+dpkg-source: info: unpacking htslib_1.1-1.debian.tar.xz
dpkg-source: info: applying debian-changes
Check disc space
@@ -227,7 +231,7 @@ SCHROOT_CHROOT_NAME=unstable-amd64-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=1000
SCHROOT_GROUP=charles
-SCHROOT_SESSION_ID=unstable-amd64-sbuild-53d58173-3a11-46dd-9b64-be5096ec1397
+SCHROOT_SESSION_ID=unstable-amd64-sbuild-01d18392-263d-4179-86e4-09a8ce3256d9
SCHROOT_UID=1000
SCHROOT_USER=charles
SHELL=/bin/sh
@@ -236,23 +240,23 @@ USER=charles
USERNAME=charles
XDG_RUNTIME_DIR=/run/user/1000
XDG_SEAT=seat0
-XDG_SESSION_ID=1
+XDG_SESSION_ID=115
XDG_VTNR=7
dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package htslib
-dpkg-buildpackage: source version 1.0-2
+dpkg-buildpackage: source version 1.1-1
dpkg-buildpackage: source distribution unstable
dpkg-buildpackage: source changed by Charles Plessy <plessy at debian.org>
- dpkg-source --before-build htslib-1.0
+ dpkg-source --before-build htslib-1.1
dpkg-buildpackage: host architecture amd64
-dpkg-source: info: using options from htslib-1.0/debian/source/options: --single-debian-patch
+dpkg-source: info: using options from htslib-1.1/debian/source/options: --single-debian-patch
fakeroot debian/rules clean
-dh clean
- dh_testdir
- dh_auto_clean
+dh clean --parallel
+ dh_testdir -O--parallel
+ dh_auto_clean -O--parallel
make -j1 distclean
make[1]: Entering directory '/«PKGBUILDDIR»'
rm -f test/*.tmp test/*.tmp.*
@@ -261,7 +265,7 @@ rm -f libhts.so libhts.so.*
rm -f libhts.a bgzip tabix test/fieldarith test/hfile test/sam test/test_view test/test-vcf-api test/test-vcf-sweep
rm -f TAGS *-uninstalled.pc
make[1]: Leaving directory '/«PKGBUILDDIR»'
- dh_clean
+ dh_clean -O--parallel
rm -f debian/libhts1.substvars
rm -f debian/libhts1.*.debhelper
rm -rf debian/libhts1/
@@ -284,20 +288,20 @@ make[1]: Leaving directory '/«PKGBUILDDIR»'
\) -exec rm -f {} + \) -o \
\( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \)
rm -f *-stamp
- dpkg-source -b htslib-1.0
-dpkg-source: info: using options from htslib-1.0/debian/source/options: --single-debian-patch
+ dpkg-source -b htslib-1.1
+dpkg-source: info: using options from htslib-1.1/debian/source/options: --single-debian-patch
dpkg-source: info: using source format `3.0 (quilt)'
-dpkg-source: info: building htslib using existing ./htslib_1.0.orig.tar.gz
+dpkg-source: info: building htslib using existing ./htslib_1.1.orig.tar.gz
dpkg-source: info: local changes detected, the modified files are:
- htslib-1.0/.travis.yml
- htslib-1.0/README.md
-dpkg-source: info: local changes have been recorded in a new patch: htslib-1.0/debian/patches/debian-changes
-dpkg-source: info: building htslib in htslib_1.0-2.debian.tar.xz
-dpkg-source: info: building htslib in htslib_1.0-2.dsc
+ htslib-1.1/.travis.yml
+ htslib-1.1/README.md
+dpkg-source: info: local changes have been recorded in a new patch: htslib-1.1/debian/patches/debian-changes
+dpkg-source: info: building htslib in htslib_1.1-1.debian.tar.xz
+dpkg-source: info: building htslib in htslib_1.1-1.dsc
debian/rules build
-dh build
- dh_testdir
- dh_auto_configure
+dh build --parallel
+ dh_testdir -O--parallel
+ dh_auto_configure -O--parallel
debian/rules override_dh_auto_build
make[1]: Entering directory '/«PKGBUILDDIR»'
dh_auto_build -- \
@@ -305,7 +309,7 @@ dh_auto_build -- \
CPPFLAGS="-I. -DSAMTOOLS=1 $(dpkg-buildflags --get CPPFLAGS)" \
LDFLAGS="$(dpkg-buildflags --get LDFLAGS)" \
# re-try later LDLIBS=-lhts \
- PACKAGE_VERSION="1.0-2" \
+ PACKAGE_VERSION="1.1-1" \
libdir=/usr/lib/x86_64-linux-gnu
make -j1 "CFLAGS=-g -O2 -fstack-protector-strong -Wformat -Werror=format-security" "CPPFLAGS=-I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2" LDFLAGS=-Wl,-z,relro
make[2]: Entering directory '/«PKGBUILDDIR»'
@@ -316,7 +320,7 @@ gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTO
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -c -o faidx.o faidx.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -c -o hfile.o hfile.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -c -o hfile_net.o hfile_net.c
-echo '#define HTS_VERSION "1.0"' > version.h
+echo '#define HTS_VERSION "1.1"' > version.h
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -c -o hts.o hts.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -c -o sam.o sam.c
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -c -o synced_bcf_reader.o synced_bcf_reader.c
@@ -402,7 +406,7 @@ make[2]: Entering directory '/«PKGBUILDDIR»'
test/fieldarith test/fieldarith.sam
test/hfile
test/sam
-cd test && ./test_view.pl
+cd test && REF_PATH=: ./test_view.pl
=== Testing aux#aux.sam, ref aux.fa ===
./test_view -S -b aux#aux.sam > aux#aux.tmp.bam
@@ -697,11 +701,11 @@ Successes 240
Failures 0
cd test && ./test.pl
test_vcf_api:
- /«PKGBUILDDIR»/test/test-vcf-api /tmp/3zZKs9rOsu/test-vcf-api.bcf
+ /«PKGBUILDDIR»/test/test-vcf-api /tmp/NKVe0YPr_D/test-vcf-api.bcf
.. ok
test_vcf_sweep:
- /«PKGBUILDDIR»/test/test-vcf-sweep /tmp/3zZKs9rOsu/test-vcf-api.bcf
+ /«PKGBUILDDIR»/test/test-vcf-sweep /tmp/NKVe0YPr_D/test-vcf-api.bcf
.. ok
@@ -715,9 +719,9 @@ rm -f test/*.tmp test/*.tmp.* test/*.o test/*.dSYM \
test/fieldarith test/hfile test/test_view test/test-vcf-api test/test-vcf-sweep
make[1]: Leaving directory '/«PKGBUILDDIR»'
fakeroot debian/rules binary
-dh binary
- dh_testroot
- dh_prep
+dh binary --parallel
+ dh_testroot -O--parallel
+ dh_prep -O--parallel
rm -f debian/libhts1.substvars
rm -f debian/libhts1.*.debhelper
rm -rf debian/libhts1/
@@ -736,30 +740,30 @@ rm /«PKGBUILDDIR»/test/sam
dh_auto_install -- \
prefix=/usr \
libdir=/usr/lib/x86_64-linux-gnu \
- PACKAGE_VERSION="1.0-2"
+ PACKAGE_VERSION="1.1-1"
install -d debian/libhts1
install -d debian/libhts-dev
install -d debian/htslib-test
install -d debian/tabix
- make -j1 install DESTDIR=/«PKGBUILDDIR»/debian/tmp AM_UPDATE_INFO_DIR=no prefix=/usr libdir=/usr/lib/x86_64-linux-gnu PACKAGE_VERSION=1.0-2
+ make -j1 install DESTDIR=/«PKGBUILDDIR»/debian/tmp AM_UPDATE_INFO_DIR=no prefix=/usr libdir=/usr/lib/x86_64-linux-gnu PACKAGE_VERSION=1.1-1
make[2]: Entering directory '/«PKGBUILDDIR»'
mkdir -p -m 755 /«PKGBUILDDIR»/debian/tmp/usr/bin /«PKGBUILDDIR»/debian/tmp/usr/include /«PKGBUILDDIR»/debian/tmp/usr/include/htslib /«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu /«PKGBUILDDIR»/debian/tmp/usr/share/man/man1 /«PKGBUILDDIR»/debian/tmp/usr/share/man/man5 /«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig
-install -p -m 644 libhts.so /«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu/libhts.so.1.0-2
-ln -sf libhts.so.1.0-2 /«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu/libhts.so
-ln -sf libhts.so.1.0-2 /«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu/libhts.so.1
-sed -e 's#@includedir@#/usr/include#g;s#@libdir@#/usr/lib/x86_64-linux-gnu#g;s#@PACKAGE_VERSION@#1.0-2#g' htslib.pc.in > /«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig/htslib.pc
+install -p -m 644 libhts.so /«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu/libhts.so.1.1-1
+ln -sf libhts.so.1.1-1 /«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu/libhts.so
+ln -sf libhts.so.1.1-1 /«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu/libhts.so.1
+sed -e 's#@includedir@#/usr/include#g;s#@libdir@#/usr/lib/x86_64-linux-gnu#g;s#@PACKAGE_VERSION@#1.1-1#g' htslib.pc.in > /«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig/htslib.pc
chmod 644 /«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig/htslib.pc
install -p bgzip tabix /«PKGBUILDDIR»/debian/tmp/usr/bin
install -p -m 644 htslib/*.h /«PKGBUILDDIR»/debian/tmp/usr/include/htslib
install -p -m 644 libhts.a /«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu/libhts.a
-install -p -m 644 *.1 /«PKGBUILDDIR»/debian/tmp/usr/share/man/man1
-install -p -m 644 *.5 /«PKGBUILDDIR»/debian/tmp/usr/share/man/man5
+install -p -m 644 tabix.1 /«PKGBUILDDIR»/debian/tmp/usr/share/man/man1
+install -p -m 644 faidx.5 sam.5 vcf.5 /«PKGBUILDDIR»/debian/tmp/usr/share/man/man5
make[2]: Leaving directory '/«PKGBUILDDIR»'
make[1]: Leaving directory '/«PKGBUILDDIR»'
- dh_install
+ dh_install -O--parallel
install -d debian/libhts1/usr/lib/x86_64-linux-gnu
cp -a debian/tmp/usr/lib/x86_64-linux-gnu/libhts.so.1 debian/libhts1/usr/lib/x86_64-linux-gnu/
- cp -a debian/tmp/usr/lib/x86_64-linux-gnu/libhts.so.1.0-2 debian/libhts1/usr/lib/x86_64-linux-gnu/
+ cp -a debian/tmp/usr/lib/x86_64-linux-gnu/libhts.so.1.1-1 debian/libhts1/usr/lib/x86_64-linux-gnu/
install -d debian/libhts-dev/usr/include
cp -a debian/tmp/usr/include/htslib debian/libhts-dev/usr/include/
install -d debian/libhts-dev/usr/lib/x86_64-linux-gnu
@@ -819,7 +823,7 @@ make[1]: Leaving directory '/«PKGBUILDDIR»'
install -d debian/tabix/usr/bin
cp -a ./tabix debian/tabix/usr/bin/
cp -a ./bgzip debian/tabix/usr/bin/
- dh_installdocs
+ dh_installdocs -O--parallel
install -g 0 -o 0 -d debian/libhts1/usr/share/doc/libhts1
install -g 0 -o 0 -m 644 -p debian/copyright debian/libhts1/usr/share/doc/libhts1/copyright
install -g 0 -o 0 -d debian/libhts-dev/usr/share/doc/libhts-dev
@@ -828,12 +832,12 @@ make[1]: Leaving directory '/«PKGBUILDDIR»'
install -g 0 -o 0 -m 644 -p debian/copyright debian/htslib-test/usr/share/doc/htslib-test/copyright
install -g 0 -o 0 -d debian/tabix/usr/share/doc/tabix
install -g 0 -o 0 -m 644 -p debian/copyright debian/tabix/usr/share/doc/tabix/copyright
- dh_installchangelogs
+ dh_installchangelogs -O--parallel
install -o 0 -g 0 -p -m644 debian/changelog debian/libhts1/usr/share/doc/libhts1/changelog.Debian
install -o 0 -g 0 -p -m644 debian/changelog debian/libhts-dev/usr/share/doc/libhts-dev/changelog.Debian
install -o 0 -g 0 -p -m644 debian/changelog debian/htslib-test/usr/share/doc/htslib-test/changelog.Debian
install -o 0 -g 0 -p -m644 debian/changelog debian/tabix/usr/share/doc/tabix/changelog.Debian
- dh_installman
+ dh_installman -O--parallel
man --recode UTF-8 ./vcf\.5 > vcf\.5\.new
chmod 644 vcf.5.new
mv -f vcf.5.new vcf.5
@@ -848,17 +852,17 @@ make[1]: Leaving directory '/«PKGBUILDDIR»'
man --recode UTF-8 ./tabix\.1 > tabix\.1\.new
chmod 644 tabix.1.new
mv -f tabix.1.new tabix.1
- dh_perl
+ dh_perl -O--parallel
(grep -s -v perl:Depends debian/htslib-test.substvars; echo perl:Depends=perl) > debian/htslib-test.substvars.new
mv debian/htslib-test.substvars.new debian/htslib-test.substvars
- dh_link
+ dh_link -O--parallel
rm -f debian/libhts1/usr/lib/x86_64-linux-gnu/libhts.so.1
- ln -sf libhts.so.1.0-2 debian/libhts1/usr/lib/x86_64-linux-gnu/libhts.so.1
+ ln -sf libhts.so.1.1-1 debian/libhts1/usr/lib/x86_64-linux-gnu/libhts.so.1
rm -f debian/libhts-dev/usr/lib/x86_64-linux-gnu/libhts.so
- ln -sf libhts.so.1.0-2 debian/libhts-dev/usr/lib/x86_64-linux-gnu/libhts.so
+ ln -sf libhts.so.1.1-1 debian/libhts-dev/usr/lib/x86_64-linux-gnu/libhts.so
rm -f debian/tabix/usr/share/man/man1/bgzip.1.gz
ln -sf tabix.1.gz debian/tabix/usr/share/man/man1/bgzip.1.gz
- dh_compress
+ dh_compress -O--parallel
cd debian/libhts1
chmod a-x usr/share/doc/libhts1/changelog.Debian
gzip -9nf usr/share/doc/libhts1/changelog.Debian
@@ -875,7 +879,7 @@ make[1]: Leaving directory '/«PKGBUILDDIR»'
chmod a-x usr/share/man/man1/tabix.1 usr/share/doc/tabix/changelog.Debian
gzip -9nf usr/share/man/man1/tabix.1 usr/share/doc/tabix/changelog.Debian
cd '/«PKGBUILDDIR»'
- dh_fixperms
+ dh_fixperms -O--parallel
find debian/libhts1 -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
find debian/libhts1 ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
find debian/libhts1/usr/share/doc -type f ! -regex 'debian/libhts1/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 644
@@ -921,12 +925,12 @@ make[1]: Leaving directory '/«PKGBUILDDIR»'
find debian/tabix/usr/lib/x86_64-linux-gnu/perl5/5.20 debian/tabix/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X
find debian/tabix/usr/bin -type f -print0 2>/dev/null | xargs -0r chmod a+x
find debian/tabix/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w
- dh_strip
- strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts1/usr/lib/x86_64-linux-gnu/libhts.so.1.0-2
+ dh_strip -O--parallel
+ strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts1/usr/lib/x86_64-linux-gnu/libhts.so.1.1-1
strip --strip-debug debian/libhts-dev/usr/lib/x86_64-linux-gnu/libhts.a
strip --remove-section=.comment --remove-section=.note debian/tabix/usr/bin/tabix
strip --remove-section=.comment --remove-section=.note debian/tabix/usr/bin/bgzip
- dh_makeshlibs
+ dh_makeshlibs -O--parallel
rm -f debian/libhts1/DEBIAN/shlibs
install -d debian/libhts1/DEBIAN
echo 'libhts 1 libhts1' >>debian/libhts1/DEBIAN/shlibs
@@ -938,20 +942,20 @@ make[1]: Leaving directory '/«PKGBUILDDIR»'
echo '# End automatically added section' >> debian/libhts1.postrm.debhelper
chmod 644 debian/libhts1/DEBIAN/shlibs
chown 0:0 debian/libhts1/DEBIAN/shlibs
- dpkg-gensymbols -plibhts1 -Idebian/libhts1.symbols -Pdebian/libhts1 "-edebian/libhts1/usr/lib/x86_64-linux-gnu/libhts.so.1.0-2\
+ dpkg-gensymbols -plibhts1 -Idebian/libhts1.symbols -Pdebian/libhts1 "-edebian/libhts1/usr/lib/x86_64-linux-gnu/libhts.so.1.1-1\
"
(grep -s -v misc:Pre-Depends debian/libhts1.substvars; echo misc:Pre-Depends=multiarch-support) > debian/libhts1.substvars.new
mv debian/libhts1.substvars.new debian/libhts1.substvars
rm -f debian/libhts-dev/DEBIAN/shlibs
rm -f debian/htslib-test/DEBIAN/shlibs
rm -f debian/tabix/DEBIAN/shlibs
- dh_shlibdeps
- dpkg-shlibdeps -Tdebian/libhts1.substvars debian/libhts1/usr/lib/x86_64-linux-gnu/libhts.so.1.0-2
+ dh_shlibdeps -O--parallel
+ dpkg-shlibdeps -Tdebian/libhts1.substvars debian/libhts1/usr/lib/x86_64-linux-gnu/libhts.so.1.1-1
install -o 0 -g 0 -d debian/libhts-dev/DEBIAN
install -o 0 -g 0 -d debian/htslib-test/DEBIAN
install -o 0 -g 0 -d debian/tabix/DEBIAN
dpkg-shlibdeps -Tdebian/tabix.substvars debian/tabix/usr/bin/tabix debian/tabix/usr/bin/bgzip
- dh_installdeb
+ dh_installdeb -O--parallel
printf '#!/bin/sh
set -e
' > debian/libhts1/DEBIAN/postinst
@@ -964,7 +968,7 @@ set -e
cat debian/libhts1.postrm.debhelper >> debian/libhts1/DEBIAN/postrm
chown 0:0 debian/libhts1/DEBIAN/postrm
chmod 755 debian/libhts1/DEBIAN/postrm
- dh_gencontrol
+ dh_gencontrol -O--parallel
echo misc:Depends= >> debian/libhts1.substvars
dpkg-gencontrol -plibhts1 -ldebian/changelog -Tdebian/libhts1.substvars -Pdebian/libhts1
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
@@ -985,7 +989,7 @@ dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is no
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
chmod 644 debian/tabix/DEBIAN/control
chown 0:0 debian/tabix/DEBIAN/control
- dh_md5sums
+ dh_md5sums -O--parallel
(cd debian/libhts1 >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null
chmod 644 debian/libhts1/DEBIAN/md5sums
chown 0:0 debian/libhts1/DEBIAN/md5sums
@@ -998,22 +1002,22 @@ dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is no
(cd debian/tabix >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null
chmod 644 debian/tabix/DEBIAN/md5sums
chown 0:0 debian/tabix/DEBIAN/md5sums
- dh_builddeb
+ dh_builddeb -O--parallel
dpkg-deb --build debian/libhts1 ..
-dpkg-deb: building package `libhts1' in `../libhts1_1.0-2_amd64.deb'.
+dpkg-deb: building package `libhts1' in `../libhts1_1.1-1_amd64.deb'.
dpkg-deb --build debian/libhts-dev ..
-dpkg-deb: building package `libhts-dev' in `../libhts-dev_1.0-2_amd64.deb'.
+dpkg-deb: building package `libhts-dev' in `../libhts-dev_1.1-1_amd64.deb'.
dpkg-deb --build debian/htslib-test ..
-dpkg-deb: building package `htslib-test' in `../htslib-test_1.0-2_all.deb'.
+dpkg-deb: building package `htslib-test' in `../htslib-test_1.1-1_all.deb'.
dpkg-deb --build debian/tabix ..
-dpkg-deb: building package `tabix' in `../tabix_1.0-2_amd64.deb'.
- dpkg-genchanges >../htslib_1.0-2_amd64.changes
-dpkg-genchanges: not including original source code in upload
- dpkg-source --after-build htslib-1.0
-dpkg-source: info: using options from htslib-1.0/debian/source/options: --single-debian-patch
-dpkg-buildpackage: binary and diff upload (original source NOT included)
+dpkg-deb: building package `tabix' in `../tabix_1.1-1_amd64.deb'.
+ dpkg-genchanges >../htslib_1.1-1_amd64.changes
+dpkg-genchanges: including full source code in upload
+ dpkg-source --after-build htslib-1.1
+dpkg-source: info: using options from htslib-1.1/debian/source/options: --single-debian-patch
+dpkg-buildpackage: full upload (original source is included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20140916-2037
+Build finished at 20140924-2129
Finished
────────
@@ -1030,7 +1034,7 @@ lintian
Merged Build-Depends: lintian
Filtered Build-Depends: lintian
-dpkg-deb: building package `sbuild-build-depends-lintian-dummy' in `/«BUILDDIR»/resolver-og3Lsr/apt_archive/sbuild-build-depends-lintian-dummy.deb'.
+dpkg-deb: building package `sbuild-build-depends-lintian-dummy' in `/«BUILDDIR»/resolver-InEKDh/apt_archive/sbuild-build-depends-lintian-dummy.deb'.
OK
Reading package lists...
@@ -1072,7 +1076,7 @@ debconf: delaying package configuration, since apt-utils is not installed
Need to get 0 B/3597 kB of archives.
After this operation, 12.0 MB of additional disk space will be used.
Selecting previously unselected package libssl1.0.0:amd64.
-(Reading database ... 12651 files and directories currently installed.)
+(Reading database ... 12655 files and directories currently installed.)
Preparing to unpack .../libssl1.0.0_1.0.1i-2_amd64.deb ...
Unpacking libssl1.0.0:amd64 (1.0.1i-2) ...
Selecting previously unselected package netbase.
@@ -1168,7 +1172,7 @@ Unpacking lintian (2.5.27) ...
Selecting previously unselected package sbuild-build-depends-lintian-dummy.
Preparing to unpack .../sbuild-build-depends-lintian-dummy.deb ...
Unpacking sbuild-build-depends-lintian-dummy (0.invalid.0) ...
-Processing triggers for man-db (2.6.7.1-1) ...
+Processing triggers for man-db (2.7.0.1-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libssl1.0.0:amd64 (1.0.1i-2) ...
Setting up netbase (5.2) ...
@@ -1204,8 +1208,7 @@ Setting up lintian (2.5.27) ...
Setting up sbuild-build-depends-lintian-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.19-11) ...
I: htslib source: quilt-patch-using-template-description debian-changes
-I: htslib source: wildcard-matches-nothing-in-dep5-copyright htslib/razf.? (paragraph at line 97)
-I: htslib source: unused-file-paragraph-in-dep5-copyright paragraph at line 97
+W: htslib source: newer-standards-version 3.9.6 (current is 3.9.5)
P: htslib source: debian-watch-may-check-gpg-signature
P: libhts-dev: no-upstream-changelog
I: libhts-dev: extended-description-is-probably-too-short
@@ -1225,15 +1228,15 @@ I: Lintian run was successful.
└──────────────────────────────────────────────────────────────────────────────┘
-htslib_1.0-2_amd64.changes:
+htslib_1.1-1_amd64.changes:
───────────────────────────
Format: 1.8
-Date: Tue, 16 Sep 2014 20:27:04 +0900
+Date: Wed, 24 Sep 2014 21:24:11 +0900
Source: htslib
Binary: libhts1 libhts-dev htslib-test tabix
Architecture: source amd64 all
-Version: 1.0-2
+Version: 1.1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
@@ -1244,53 +1247,61 @@ Description:
libhts1 - C library for high-throughput sequencing data formats
tabix - generic indexer for TAB-delimited genome position files
Changes:
- htslib (1.0-2) unstable; urgency=medium
+ htslib (1.1-1) unstable; urgency=medium
.
- Uploaded to unstable (see previous changelog from experimental).
+ 1357fbd Merge tag '1.1' into debian/unstable
+ 87549cd Updated symbols file. One symbol is missing.
+ 873ea9b Removed orphan paragraph in machine-readable copyright file.
+ 49de2b9 Allow parallel build.
+ 7fe3bb5 Normalise control file (VCS-Browser, Pre-Depends).
+ 0e5e9e6 Conforms to Policy 3.9.6.
Checksums-Sha1:
- 26a46a9d4c72fc67320aa63547cced5d37cb1ef4 1204 htslib_1.0-2.dsc
- 4d3ffed48e525aa614c6d90ca609ffd6478c0834 8168 htslib_1.0-2.debian.tar.xz
- 4f7acbe3666d29c9356a3b1ad791df69c5452211 204078 libhts1_1.0-2_amd64.deb
- bfb9a013f97ec60033dd50883d091874bff89b38 249018 libhts-dev_1.0-2_amd64.deb
- 97e7ab12503eeadcdcd5d2a35c29eb15a1eeec94 516114 htslib-test_1.0-2_all.deb
- 7dd5fe6fe85a29dcd1f603dbec40f1eefbb413cd 189978 tabix_1.0-2_amd64.deb
+ 64174691d6b696c41a0cf1cb1a04f557d23625b9 1200 htslib_1.1-1.dsc
+ 206d1947eea6ad0b519e8c271702cdc281c976a7 957217 htslib_1.1.orig.tar.gz
+ 883afbd9282c3e6dc02e7feed024229ba58fe565 8228 htslib_1.1-1.debian.tar.xz
+ 6e2b09a03a74c3abf8def399a75e9c6214181920 204556 libhts1_1.1-1_amd64.deb
+ e7430b65ca6a44e3157276fcd3448951da418650 249544 libhts-dev_1.1-1_amd64.deb
+ 5d17f0cc3291f02de7995fd8d866a407ec852ef8 516462 htslib-test_1.1-1_all.deb
+ cb0ebcaef0899425a987aa0211e89ba92d8aa185 189910 tabix_1.1-1_amd64.deb
Checksums-Sha256:
- 50402a0e8f5d7a0938fbbc7932dd93bf6acded810dd08d0aea788fca8e06bfe0 1204 htslib_1.0-2.dsc
- e6cdea9223ba502ee6f1956bf7c066951120396f46ad5f883cf7fe8639e4a68b 8168 htslib_1.0-2.debian.tar.xz
- b75989c2273ec9b0a8299dc5daef5fe9270ef41e7ba1b705090d5b17a61d8bbe 204078 libhts1_1.0-2_amd64.deb
- fd2dc1cf4eebbf9da12eb28ba652fe560b1f47b6ff0042f1ea554e5a0ba812f3 249018 libhts-dev_1.0-2_amd64.deb
- f8475f18a700a9f469c90bdf9fcf3c34e8ab38281a831ad3ec6747fcc265260a 516114 htslib-test_1.0-2_all.deb
- 44908fc4b5cae97723b9acb5a631a795a9f1021d8783542bebdfbea28b01654a 189978 tabix_1.0-2_amd64.deb
+ 0e27964764e9ba0c3b8ae2cf7d60733edfbece8cebda3bde9367c02e9da1602d 1200 htslib_1.1-1.dsc
+ eb0a7918862336518afcaf62e3d7da8b7f87053fd40d88f2d1ab689f7f25923f 957217 htslib_1.1.orig.tar.gz
+ 933344fb9e357794bcbe162ceebc89d5c72870805e985ad06344ba703718b7fd 8228 htslib_1.1-1.debian.tar.xz
+ 04055c2b92f14d44338f4911875f9f82c87888564576937f9d23102d61e2f03a 204556 libhts1_1.1-1_amd64.deb
+ 0b47cd8f6feff42f55432cc6079117e55de126e6cebab77e4c9741ac47d1f21d 249544 libhts-dev_1.1-1_amd64.deb
+ de6f9e1724e2d951675b5d10d2e727e65fa310ae3efc0952b82d418828eed171 516462 htslib-test_1.1-1_all.deb
+ f8be942aea134a3a28c68eec11ff505a0116160d59680401f792864dab8c696d 189910 tabix_1.1-1_amd64.deb
Files:
- 8ffc250bba417d6bcf070ca2b885f013 204078 libs optional libhts1_1.0-2_amd64.deb
- f79a07fdad848e91a280a49e050d13e1 249018 libdevel optional libhts-dev_1.0-2_amd64.deb
- 280c34dbe5a0b8d296a6eab6d7e69ce9 516114 science optional htslib-test_1.0-2_all.deb
- 841963677645879ffa8fb9962721f9eb 189978 science optional tabix_1.0-2_amd64.deb
- 6d95fc6247432323659e0a45d9c8ea1c 1204 science optional htslib_1.0-2.dsc
- b0921cda431b57bdbd688f460de3574d 8168 science optional htslib_1.0-2.debian.tar.xz
+ ba400c82cd9932fc6feb77f4f3e0072d 204556 libs optional libhts1_1.1-1_amd64.deb
+ 75e0ce0dbd48da4f8ca0609d5adaefec 249544 libdevel optional libhts-dev_1.1-1_amd64.deb
+ 1bd2059de9bb0186449165ec1f409e42 516462 science optional htslib-test_1.1-1_all.deb
+ 0a7109428dd7b989d82e80f6c6e72bdb 189910 science optional tabix_1.1-1_amd64.deb
+ b46a895274c92ed28530251f1dcf42be 1200 science optional htslib_1.1-1.dsc
+ d0be108a121ace289fc960b854625f84 957217 science optional htslib_1.1.orig.tar.gz
+ 2f74134e218c9e7c00c8ba7a6229bbea 8228 science optional htslib_1.1-1.debian.tar.xz
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-libhts1_1.0-2_amd64.deb
+libhts1_1.1-1_amd64.deb
───────────────────────
new debian package, version 2.0.
- size 204078 bytes: control archive=4374 bytes.
+ size 204556 bytes: control archive=4412 bytes.
979 bytes, 22 lines control
217 bytes, 3 lines md5sums
135 bytes, 7 lines * postinst #!/bin/sh
132 bytes, 7 lines * postrm #!/bin/sh
17 bytes, 1 lines shlibs
- 13474 bytes, 529 lines symbols
+ 13564 bytes, 533 lines symbols
Package: libhts1
Source: htslib
- Version: 1.0-2
+ Version: 1.1-1
Architecture: amd64
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 543
+ Installed-Size: 542
Pre-Depends: multiarch-support
Depends: libc6 (>= 2.15), zlib1g (>= 1:1.2.0.2)
Section: libs
@@ -1308,33 +1319,33 @@ libhts1_1.0-2_amd64.deb
‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the
new index and then for the old if the new index is absent.
-drwxr-xr-x root/root 0 2014-09-16 20:37 ./
-drwxr-xr-x root/root 0 2014-09-16 20:37 ./usr/
-drwxr-xr-x root/root 0 2014-09-16 20:37 ./usr/lib/
-drwxr-xr-x root/root 0 2014-09-16 20:37 ./usr/lib/x86_64-linux-gnu/
-lrwxrwxrwx root/root 0 2014-09-16 20:37 ./usr/lib/x86_64-linux-gnu/libhts.so.1 -> libhts.so.1.0-2
--rw-r--r-- root/root 501280 2014-09-16 20:37 ./usr/lib/x86_64-linux-gnu/libhts.so.1.0-2
-drwxr-xr-x root/root 0 2014-09-16 20:37 ./usr/share/
-drwxr-xr-x root/root 0 2014-09-16 20:37 ./usr/share/doc/
-drwxr-xr-x root/root 0 2014-09-16 20:37 ./usr/share/doc/libhts1/
--rw-r--r-- root/root 624 2014-09-16 20:28 ./usr/share/doc/libhts1/changelog.Debian.gz
--rw-r--r-- root/root 7175 2014-08-18 21:03 ./usr/share/doc/libhts1/copyright
+drwxr-xr-x root/root 0 2014-09-24 21:29 ./
+drwxr-xr-x root/root 0 2014-09-24 21:29 ./usr/
+drwxr-xr-x root/root 0 2014-09-24 21:29 ./usr/lib/
+drwxr-xr-x root/root 0 2014-09-24 21:29 ./usr/lib/x86_64-linux-gnu/
+lrwxrwxrwx root/root 0 2014-09-24 21:29 ./usr/lib/x86_64-linux-gnu/libhts.so.1 -> libhts.so.1.1-1
+-rw-r--r-- root/root 501296 2014-09-24 21:29 ./usr/lib/x86_64-linux-gnu/libhts.so.1.1-1
+drwxr-xr-x root/root 0 2014-09-24 21:29 ./usr/share/
+drwxr-xr-x root/root 0 2014-09-24 21:29 ./usr/share/doc/
+drwxr-xr-x root/root 0 2014-09-24 21:29 ./usr/share/doc/libhts1/
+-rw-r--r-- root/root 816 2014-09-24 21:25 ./usr/share/doc/libhts1/changelog.Debian.gz
+-rw-r--r-- root/root 5779 2014-09-24 21:20 ./usr/share/doc/libhts1/copyright
-libhts-dev_1.0-2_amd64.deb
+libhts-dev_1.1-1_amd64.deb
──────────────────────────
new debian package, version 2.0.
- size 249018 bytes: control archive=1305 bytes.
+ size 249544 bytes: control archive=1300 bytes.
449 bytes, 14 lines control
1667 bytes, 26 lines md5sums
Package: libhts-dev
Source: htslib
- Version: 1.0-2
+ Version: 1.1-1
Architecture: amd64
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Installed-Size: 945
- Depends: libhts1 (= 1.0-2)
+ Depends: libhts1 (= 1.1-1)
Section: libdevel
Priority: optional
Multi-Arch: same
@@ -1343,60 +1354,60 @@ libhts-dev_1.0-2_amd64.deb
This package contains development files for the HTSlib: headers, static
library, manual pages, etc.
-drwxr-xr-x root/root 0 2014-09-16 20:37 ./
-drwxr-xr-x root/root 0 2014-09-16 20:37 ./usr/
-drwxr-xr-x root/root 0 2014-09-16 20:37 ./usr/include/
-drwxr-xr-x root/root 0 2014-09-16 20:37 ./usr/include/htslib/
--rw-r--r-- root/root 10450 2014-08-15 19:04 ./usr/include/htslib/bgzf.h
--rw-r--r-- root/root 4101 2014-08-15 19:04 ./usr/include/htslib/faidx.h
--rw-r--r-- root/root 6558 2014-08-15 19:04 ./usr/include/htslib/hfile.h
--rw-r--r-- root/root 10673 2014-08-15 19:04 ./usr/include/htslib/hts.h
--rw-r--r-- root/root 1721 2014-08-15 19:04 ./usr/include/htslib/hts_defs.h
--rw-r--r-- root/root 2647 2014-08-15 19:04 ./usr/include/htslib/kfunc.h
--rw-r--r-- root/root 21224 2014-08-15 19:04 ./usr/include/htslib/khash.h
--rw-r--r-- root/root 3637 2014-08-15 19:04 ./usr/include/htslib/khash_str2int.h
--rw-r--r-- root/root 4651 2014-08-15 19:04 ./usr/include/htslib/klist.h
--rw-r--r-- root/root 2828 2014-08-15 19:04 ./usr/include/htslib/knetfile.h
--rw-r--r-- root/root 8934 2014-08-15 19:04 ./usr/include/htslib/kseq.h
--rw-r--r-- root/root 10125 2014-08-15 19:04 ./usr/include/htslib/ksort.h
--rw-r--r-- root/root 6657 2014-08-15 19:04 ./usr/include/htslib/kstring.h
--rw-r--r-- root/root 15120 2014-08-15 19:04 ./usr/include/htslib/sam.h
--rw-r--r-- root/root 12203 2014-08-15 19:04 ./usr/include/htslib/synced_bcf_reader.h
--rw-r--r-- root/root 2747 2014-08-15 19:04 ./usr/include/htslib/tbx.h
--rw-r--r-- root/root 37811 2014-08-15 19:04 ./usr/include/htslib/vcf.h
--rw-r--r-- root/root 1517 2014-08-15 19:04 ./usr/include/htslib/vcf_sweep.h
--rw-r--r-- root/root 3988 2014-08-15 19:04 ./usr/include/htslib/vcfutils.h
-drwxr-xr-x root/root 0 2014-09-16 20:37 ./usr/lib/
-drwxr-xr-x root/root 0 2014-09-16 20:37 ./usr/lib/x86_64-linux-gnu/
--rw-r--r-- root/root 732342 2014-09-16 20:37 ./usr/lib/x86_64-linux-gnu/libhts.a
-lrwxrwxrwx root/root 0 2014-09-16 20:37 ./usr/lib/x86_64-linux-gnu/libhts.so -> libhts.so.1.0-2
-drwxr-xr-x root/root 0 2014-09-16 20:37 ./usr/lib/x86_64-linux-gnu/pkgconfig/
--rw-r--r-- root/root 270 2014-09-16 20:37 ./usr/lib/x86_64-linux-gnu/pkgconfig/htslib.pc
-drwxr-xr-x root/root 0 2014-09-16 20:37 ./usr/share/
-drwxr-xr-x root/root 0 2014-09-16 20:37 ./usr/share/doc/
-drwxr-xr-x root/root 0 2014-09-16 20:37 ./usr/share/doc/libhts-dev/
--rw-r--r-- root/root 624 2014-09-16 20:28 ./usr/share/doc/libhts-dev/changelog.Debian.gz
--rw-r--r-- root/root 7175 2014-08-18 21:03 ./usr/share/doc/libhts-dev/copyright
-drwxr-xr-x root/root 0 2014-09-16 20:37 ./usr/share/man/
-drwxr-xr-x root/root 0 2014-09-16 20:37 ./usr/share/man/man5/
--rw-r--r-- root/root 2081 2014-09-16 20:37 ./usr/share/man/man5/faidx.5.gz
--rw-r--r-- root/root 1535 2014-09-16 20:37 ./usr/share/man/man5/sam.5.gz
--rw-r--r-- root/root 1854 2014-09-16 20:37 ./usr/share/man/man5/vcf.5.gz
-
-
-htslib-test_1.0-2_all.deb
+drwxr-xr-x root/root 0 2014-09-24 21:29 ./
+drwxr-xr-x root/root 0 2014-09-24 21:29 ./usr/
+drwxr-xr-x root/root 0 2014-09-24 21:29 ./usr/include/
+drwxr-xr-x root/root 0 2014-09-24 21:29 ./usr/include/htslib/
+-rw-r--r-- root/root 10450 2014-09-23 23:39 ./usr/include/htslib/bgzf.h
+-rw-r--r-- root/root 4475 2014-09-23 23:39 ./usr/include/htslib/faidx.h
+-rw-r--r-- root/root 6558 2014-09-23 23:39 ./usr/include/htslib/hfile.h
+-rw-r--r-- root/root 10673 2014-09-23 23:39 ./usr/include/htslib/hts.h
+-rw-r--r-- root/root 1721 2014-09-23 23:39 ./usr/include/htslib/hts_defs.h
+-rw-r--r-- root/root 2647 2014-09-23 23:39 ./usr/include/htslib/kfunc.h
+-rw-r--r-- root/root 21224 2014-09-23 23:39 ./usr/include/htslib/khash.h
+-rw-r--r-- root/root 3798 2014-09-23 23:39 ./usr/include/htslib/khash_str2int.h
+-rw-r--r-- root/root 4651 2014-09-23 23:39 ./usr/include/htslib/klist.h
+-rw-r--r-- root/root 2828 2014-09-23 23:39 ./usr/include/htslib/knetfile.h
+-rw-r--r-- root/root 8934 2014-09-23 23:39 ./usr/include/htslib/kseq.h
+-rw-r--r-- root/root 10125 2014-09-23 23:39 ./usr/include/htslib/ksort.h
+-rw-r--r-- root/root 6657 2014-09-23 23:39 ./usr/include/htslib/kstring.h
+-rw-r--r-- root/root 15120 2014-09-23 23:39 ./usr/include/htslib/sam.h
+-rw-r--r-- root/root 12203 2014-09-23 23:39 ./usr/include/htslib/synced_bcf_reader.h
+-rw-r--r-- root/root 2747 2014-09-23 23:39 ./usr/include/htslib/tbx.h
+-rw-r--r-- root/root 38337 2014-09-23 23:39 ./usr/include/htslib/vcf.h
+-rw-r--r-- root/root 1517 2014-09-23 23:39 ./usr/include/htslib/vcf_sweep.h
+-rw-r--r-- root/root 3988 2014-09-23 23:39 ./usr/include/htslib/vcfutils.h
+drwxr-xr-x root/root 0 2014-09-24 21:29 ./usr/lib/
+drwxr-xr-x root/root 0 2014-09-24 21:29 ./usr/lib/x86_64-linux-gnu/
+-rw-r--r-- root/root 733376 2014-09-24 21:29 ./usr/lib/x86_64-linux-gnu/libhts.a
+lrwxrwxrwx root/root 0 2014-09-24 21:29 ./usr/lib/x86_64-linux-gnu/libhts.so -> libhts.so.1.1-1
+drwxr-xr-x root/root 0 2014-09-24 21:29 ./usr/lib/x86_64-linux-gnu/pkgconfig/
+-rw-r--r-- root/root 270 2014-09-24 21:29 ./usr/lib/x86_64-linux-gnu/pkgconfig/htslib.pc
+drwxr-xr-x root/root 0 2014-09-24 21:29 ./usr/share/
+drwxr-xr-x root/root 0 2014-09-24 21:29 ./usr/share/doc/
+drwxr-xr-x root/root 0 2014-09-24 21:29 ./usr/share/doc/libhts-dev/
+-rw-r--r-- root/root 816 2014-09-24 21:25 ./usr/share/doc/libhts-dev/changelog.Debian.gz
+-rw-r--r-- root/root 5779 2014-09-24 21:20 ./usr/share/doc/libhts-dev/copyright
+drwxr-xr-x root/root 0 2014-09-24 21:29 ./usr/share/man/
+drwxr-xr-x root/root 0 2014-09-24 21:29 ./usr/share/man/man5/
+-rw-r--r-- root/root 2081 2014-09-24 21:29 ./usr/share/man/man5/faidx.5.gz
+-rw-r--r-- root/root 1535 2014-09-24 21:29 ./usr/share/man/man5/sam.5.gz
+-rw-r--r-- root/root 1854 2014-09-24 21:29 ./usr/share/man/man5/vcf.5.gz
+
+
+htslib-test_1.1-1_all.deb
─────────────────────────
new debian package, version 2.0.
- size 516114 bytes: control archive=1773 bytes.
+ size 516462 bytes: control archive=1777 bytes.
366 bytes, 12 lines control
3161 bytes, 46 lines md5sums
Package: htslib-test
Source: htslib
- Version: 1.0-2
+ Version: 1.1-1
Architecture: all
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 4122
+ Installed-Size: 4121
Depends: perl
Section: science
Priority: optional
@@ -1404,73 +1415,73 @@ htslib-test_1.0-2_all.deb
Description: Test data for HTSlib
This package contains test files and scripts for the HTSlib.
-drwxr-xr-x root/root 0 2014-09-16 20:37 ./
-drwxr-xr-x root/root 0 2014-09-16 20:37 ./usr/
-drwxr-xr-x root/root 0 2014-09-16 20:37 ./usr/share/
-drwxr-xr-x root/root 0 2014-09-16 20:37 ./usr/share/doc/
-drwxr-xr-x root/root 0 2014-09-16 20:37 ./usr/share/doc/htslib-test/
--rw-r--r-- root/root 624 2014-09-16 20:28 ./usr/share/doc/htslib-test/changelog.Debian.gz
--rw-r--r-- root/root 7175 2014-08-18 21:03 ./usr/share/doc/htslib-test/copyright
-drwxr-xr-x root/root 0 2014-09-16 20:37 ./usr/share/htslib-test/
--rw-r--r-- root/root 727 2014-08-15 19:04 ./usr/share/htslib-test/aux#aux.sam
--rw-r--r-- root/root 29 2014-08-15 19:04 ./usr/share/htslib-test/aux.fa
--rw-r--r-- root/root 18 2014-08-15 19:04 ./usr/share/htslib-test/aux.fa.fai
--rw-r--r-- root/root 148 2014-08-15 19:04 ./usr/share/htslib-test/c1#bounds.sam
--rw-r--r-- root/root 337 2014-08-15 19:04 ./usr/share/htslib-test/c1#clip.sam
--rw-r--r-- root/root 388 2014-08-15 19:04 ./usr/share/htslib-test/c1#pad1.sam
--rw-r--r-- root/root 527 2014-08-15 19:04 ./usr/share/htslib-test/c1#pad2.sam
--rw-r--r-- root/root 665 2014-08-15 19:04 ./usr/share/htslib-test/c1#pad3.sam
--rw-r--r-- root/root 15 2014-08-15 19:04 ./usr/share/htslib-test/c1.fa
--rw-r--r-- root/root 14 2014-08-15 19:04 ./usr/share/htslib-test/c1.fa.fai
--rw-r--r-- root/root 342 2014-08-15 19:04 ./usr/share/htslib-test/ce#1.sam
--rw-r--r-- root/root 646 2014-08-15 19:04 ./usr/share/htslib-test/ce#2.sam
--rw-r--r-- root/root 1889 2014-08-15 19:04 ./usr/share/htslib-test/ce#5.sam
--rw-r--r-- root/root 1853 2014-08-15 19:04 ./usr/share/htslib-test/ce#5b.sam
--rw-r--r-- root/root 2147245 2014-08-15 19:04 ./usr/share/htslib-test/ce#large_seq.sam
--rw-r--r-- root/root 1634 2014-08-15 19:04 ./usr/share/htslib-test/ce#tag_depadded.sam
--rw-r--r-- root/root 1646 2014-08-15 19:04 ./usr/share/htslib-test/ce#tag_padded.sam
--rw-r--r-- root/root 1325 2014-08-15 19:04 ./usr/share/htslib-test/ce#unmap.sam
--rw-r--r-- root/root 2769 2014-08-15 19:04 ./usr/share/htslib-test/ce#unmap1.sam
--rw-r--r-- root/root 5547 2014-08-15 19:04 ./usr/share/htslib-test/ce#unmap2.sam
--rw-r--r-- root/root 1060702 2014-08-15 19:04 ./usr/share/htslib-test/ce.fa
--rw-r--r-- root/root 230 2014-08-15 19:04 ./usr/share/htslib-test/ce.fa.fai
--rwxr-xr-x root/root 4351 2014-08-15 19:04 ./usr/share/htslib-test/compare_sam.pl
--rw-r--r-- root/root 2409 2014-08-15 19:04 ./usr/share/htslib-test/fieldarith.c
--rw-r--r-- root/root 916 2014-08-15 19:04 ./usr/share/htslib-test/fieldarith.sam
--rw-r--r-- root/root 6824 2014-08-15 19:04 ./usr/share/htslib-test/hfile.c
--rw-r--r-- root/root 4751 2014-08-15 19:04 ./usr/share/htslib-test/sam.c
--rw-r--r-- root/root 8946 2014-08-15 19:04 ./usr/share/htslib-test/test-vcf-api.c
--rw-r--r-- root/root 1936 2014-08-15 19:04 ./usr/share/htslib-test/test-vcf-api.out
--rw-r--r-- root/root 3802 2014-08-15 19:04 ./usr/share/htslib-test/test-vcf-sweep.c
--rw-r--r-- root/root 92 2014-08-15 19:04 ./usr/share/htslib-test/test-vcf-sweep.out
--rwxr-xr-x root/root 6226 2014-08-15 19:04 ./usr/share/htslib-test/test.pl
--rw-r--r-- root/root 4830 2014-08-15 19:04 ./usr/share/htslib-test/test_view.c
--rwxr-xr-x root/root 2329 2014-08-15 19:04 ./usr/share/htslib-test/test_view.pl
--rw-r--r-- root/root 0 2014-08-15 19:04 ./usr/share/htslib-test/xx#blank.sam
--rw-r--r-- root/root 905485 2014-08-15 19:04 ./usr/share/htslib-test/xx#large_aux.sam
--rw-r--r-- root/root 651 2014-08-15 19:04 ./usr/share/htslib-test/xx#large_aux2.sam
--rw-r--r-- root/root 254 2014-08-15 19:04 ./usr/share/htslib-test/xx#minimal.sam
--rw-r--r-- root/root 304 2014-08-15 19:04 ./usr/share/htslib-test/xx#pair.sam
--rw-r--r-- root/root 517 2014-08-15 19:04 ./usr/share/htslib-test/xx#rg.sam
--rw-r--r-- root/root 267 2014-08-15 19:04 ./usr/share/htslib-test/xx#triplet.sam
--rw-r--r-- root/root 320 2014-08-15 19:04 ./usr/share/htslib-test/xx#unsorted.sam
--rw-r--r-- root/root 51 2014-08-15 19:04 ./usr/share/htslib-test/xx.fa
--rw-r--r-- root/root 29 2014-08-15 19:04 ./usr/share/htslib-test/xx.fa.fai
-
-
-tabix_1.0-2_amd64.deb
+drwxr-xr-x root/root 0 2014-09-24 21:29 ./
+drwxr-xr-x root/root 0 2014-09-24 21:29 ./usr/
+drwxr-xr-x root/root 0 2014-09-24 21:29 ./usr/share/
+drwxr-xr-x root/root 0 2014-09-24 21:29 ./usr/share/doc/
+drwxr-xr-x root/root 0 2014-09-24 21:29 ./usr/share/doc/htslib-test/
+-rw-r--r-- root/root 816 2014-09-24 21:25 ./usr/share/doc/htslib-test/changelog.Debian.gz
+-rw-r--r-- root/root 5779 2014-09-24 21:20 ./usr/share/doc/htslib-test/copyright
+drwxr-xr-x root/root 0 2014-09-24 21:29 ./usr/share/htslib-test/
+-rw-r--r-- root/root 727 2014-09-23 23:39 ./usr/share/htslib-test/aux#aux.sam
+-rw-r--r-- root/root 29 2014-09-23 23:39 ./usr/share/htslib-test/aux.fa
+-rw-r--r-- root/root 18 2014-09-23 23:39 ./usr/share/htslib-test/aux.fa.fai
+-rw-r--r-- root/root 148 2014-09-23 23:39 ./usr/share/htslib-test/c1#bounds.sam
+-rw-r--r-- root/root 337 2014-09-23 23:39 ./usr/share/htslib-test/c1#clip.sam
+-rw-r--r-- root/root 388 2014-09-23 23:39 ./usr/share/htslib-test/c1#pad1.sam
+-rw-r--r-- root/root 527 2014-09-23 23:39 ./usr/share/htslib-test/c1#pad2.sam
+-rw-r--r-- root/root 665 2014-09-23 23:39 ./usr/share/htslib-test/c1#pad3.sam
+-rw-r--r-- root/root 15 2014-09-23 23:39 ./usr/share/htslib-test/c1.fa
+-rw-r--r-- root/root 14 2014-09-23 23:39 ./usr/share/htslib-test/c1.fa.fai
+-rw-r--r-- root/root 342 2014-09-23 23:39 ./usr/share/htslib-test/ce#1.sam
+-rw-r--r-- root/root 646 2014-09-23 23:39 ./usr/share/htslib-test/ce#2.sam
+-rw-r--r-- root/root 1889 2014-09-23 23:39 ./usr/share/htslib-test/ce#5.sam
+-rw-r--r-- root/root 1853 2014-09-23 23:39 ./usr/share/htslib-test/ce#5b.sam
+-rw-r--r-- root/root 2147245 2014-09-23 23:39 ./usr/share/htslib-test/ce#large_seq.sam
+-rw-r--r-- root/root 1634 2014-09-23 23:39 ./usr/share/htslib-test/ce#tag_depadded.sam
+-rw-r--r-- root/root 1646 2014-09-23 23:39 ./usr/share/htslib-test/ce#tag_padded.sam
+-rw-r--r-- root/root 1325 2014-09-23 23:39 ./usr/share/htslib-test/ce#unmap.sam
+-rw-r--r-- root/root 2769 2014-09-23 23:39 ./usr/share/htslib-test/ce#unmap1.sam
+-rw-r--r-- root/root 5547 2014-09-23 23:39 ./usr/share/htslib-test/ce#unmap2.sam
+-rw-r--r-- root/root 1060702 2014-09-23 23:39 ./usr/share/htslib-test/ce.fa
+-rw-r--r-- root/root 230 2014-09-23 23:39 ./usr/share/htslib-test/ce.fa.fai
+-rwxr-xr-x root/root 4351 2014-09-23 23:39 ./usr/share/htslib-test/compare_sam.pl
+-rw-r--r-- root/root 2409 2014-09-23 23:39 ./usr/share/htslib-test/fieldarith.c
+-rw-r--r-- root/root 916 2014-09-23 23:39 ./usr/share/htslib-test/fieldarith.sam
+-rw-r--r-- root/root 6824 2014-09-23 23:39 ./usr/share/htslib-test/hfile.c
+-rw-r--r-- root/root 4751 2014-09-23 23:39 ./usr/share/htslib-test/sam.c
+-rw-r--r-- root/root 8946 2014-09-23 23:39 ./usr/share/htslib-test/test-vcf-api.c
+-rw-r--r-- root/root 1936 2014-09-23 23:39 ./usr/share/htslib-test/test-vcf-api.out
+-rw-r--r-- root/root 3802 2014-09-23 23:39 ./usr/share/htslib-test/test-vcf-sweep.c
+-rw-r--r-- root/root 92 2014-09-23 23:39 ./usr/share/htslib-test/test-vcf-sweep.out
+-rwxr-xr-x root/root 6226 2014-09-23 23:39 ./usr/share/htslib-test/test.pl
+-rw-r--r-- root/root 4830 2014-09-23 23:39 ./usr/share/htslib-test/test_view.c
+-rwxr-xr-x root/root 2329 2014-09-23 23:39 ./usr/share/htslib-test/test_view.pl
+-rw-r--r-- root/root 0 2014-09-23 23:39 ./usr/share/htslib-test/xx#blank.sam
+-rw-r--r-- root/root 905485 2014-09-23 23:39 ./usr/share/htslib-test/xx#large_aux.sam
+-rw-r--r-- root/root 651 2014-09-23 23:39 ./usr/share/htslib-test/xx#large_aux2.sam
+-rw-r--r-- root/root 254 2014-09-23 23:39 ./usr/share/htslib-test/xx#minimal.sam
+-rw-r--r-- root/root 304 2014-09-23 23:39 ./usr/share/htslib-test/xx#pair.sam
+-rw-r--r-- root/root 517 2014-09-23 23:39 ./usr/share/htslib-test/xx#rg.sam
+-rw-r--r-- root/root 267 2014-09-23 23:39 ./usr/share/htslib-test/xx#triplet.sam
+-rw-r--r-- root/root 320 2014-09-23 23:39 ./usr/share/htslib-test/xx#unsorted.sam
+-rw-r--r-- root/root 51 2014-09-23 23:39 ./usr/share/htslib-test/xx.fa
+-rw-r--r-- root/root 29 2014-09-23 23:39 ./usr/share/htslib-test/xx.fa.fai
+
+
+tabix_1.1-1_amd64.deb
─────────────────────
new debian package, version 2.0.
- size 189978 bytes: control archive=933 bytes.
+ size 189910 bytes: control archive=930 bytes.
844 bytes, 19 lines control
298 bytes, 5 lines md5sums
Package: tabix
Source: htslib
- Version: 1.0-2
+ Version: 1.1-1
Architecture: amd64
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 762
+ Installed-Size: 760
Depends: libc6 (>= 2.15), zlib1g (>= 1:1.2.0.2)
Section: science
Priority: optional
@@ -1485,20 +1496,20 @@ tabix_1.0-2_amd64.deb
.
This version of tabix is built from the HTSlib source.
-drwxr-xr-x root/root 0 2014-09-16 20:37 ./
-drwxr-xr-x root/root 0 2014-09-16 20:37 ./usr/
-drwxr-xr-x root/root 0 2014-09-16 20:37 ./usr/bin/
--rwxr-xr-x root/root 326968 2014-09-16 20:37 ./usr/bin/bgzip
--rwxr-xr-x root/root 405176 2014-09-16 20:37 ./usr/bin/tabix
-drwxr-xr-x root/root 0 2014-09-16 20:37 ./usr/share/
-drwxr-xr-x root/root 0 2014-09-16 20:37 ./usr/share/doc/
-drwxr-xr-x root/root 0 2014-09-16 20:37 ./usr/share/doc/tabix/
--rw-r--r-- root/root 624 2014-09-16 20:28 ./usr/share/doc/tabix/changelog.Debian.gz
--rw-r--r-- root/root 7175 2014-08-18 21:03 ./usr/share/doc/tabix/copyright
-drwxr-xr-x root/root 0 2014-09-16 20:37 ./usr/share/man/
-drwxr-xr-x root/root 0 2014-09-16 20:37 ./usr/share/man/man1/
-lrwxrwxrwx root/root 0 2014-09-16 20:37 ./usr/share/man/man1/bgzip.1.gz -> tabix.1.gz
--rw-r--r-- root/root 2477 2014-09-16 20:37 ./usr/share/man/man1/tabix.1.gz
+drwxr-xr-x root/root 0 2014-09-24 21:29 ./
+drwxr-xr-x root/root 0 2014-09-24 21:29 ./usr/
+drwxr-xr-x root/root 0 2014-09-24 21:29 ./usr/bin/
+-rwxr-xr-x root/root 326968 2014-09-24 21:29 ./usr/bin/bgzip
+-rwxr-xr-x root/root 405176 2014-09-24 21:29 ./usr/bin/tabix
+drwxr-xr-x root/root 0 2014-09-24 21:29 ./usr/share/
+drwxr-xr-x root/root 0 2014-09-24 21:29 ./usr/share/doc/
+drwxr-xr-x root/root 0 2014-09-24 21:29 ./usr/share/doc/tabix/
+-rw-r--r-- root/root 816 2014-09-24 21:25 ./usr/share/doc/tabix/changelog.Debian.gz
+-rw-r--r-- root/root 5779 2014-09-24 21:20 ./usr/share/doc/tabix/copyright
+drwxr-xr-x root/root 0 2014-09-24 21:29 ./usr/share/man/
+drwxr-xr-x root/root 0 2014-09-24 21:29 ./usr/share/man/man1/
+lrwxrwxrwx root/root 0 2014-09-24 21:29 ./usr/share/man/man1/bgzip.1.gz -> tabix.1.gz
+-rw-r--r-- root/root 2483 2014-09-24 21:29 ./usr/share/man/man1/tabix.1.gz
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -1534,8 +1545,8 @@ The following packages will be REMOVED:
sbuild-build-depends-htslib-dummy* sbuild-build-depends-lintian-dummy*
t1utils* zlib1g-dev*
0 upgraded, 0 newly installed, 53 to remove and 0 not upgraded.
-After this operation, 39.5 MB disk space will be freed.
-(Reading database ... 13875 files and directories currently installed.)
+After this operation, 39.0 MB disk space will be freed.
+(Reading database ... 13879 files and directories currently installed.)
Removing sbuild-build-depends-lintian-dummy (0.invalid.0) ...
Removing lintian (2.5.27) ...
Purging configuration files for lintian (2.5.27) ...
@@ -1576,8 +1587,8 @@ Removing sbuild-build-depends-core-dummy (0.invalid.0) ...
Removing t1utils (1.37-2.1) ...
Removing zlib1g-dev:amd64 (1:1.2.8.dfsg-2) ...
Removing debhelper (9.20140817) ...
-Removing man-db (2.6.7.1-1) ...
-Purging configuration files for man-db (2.6.7.1-1) ...
+Removing man-db (2.7.0.1-1) ...
+Purging configuration files for man-db (2.7.0.1-1) ...
Removing bsdmainutils (9.0.5) ...
Purging configuration files for bsdmainutils (9.0.5) ...
Removing file (1:5.19-2) ...
@@ -1590,14 +1601,14 @@ Purging configuration files for groff-base (1.22.2-8) ...
Removing libasprintf0c2:amd64 (0.19.2-2) ...
Removing libcroco3:amd64 (0.6.8-3) ...
Purging configuration files for libcroco3:amd64 (0.6.8-3) ...
-Removing libglib2.0-0:amd64 (2.40.0-5) ...
-Purging configuration files for libglib2.0-0:amd64 (2.40.0-5) ...
+Removing libglib2.0-0:amd64 (2.42.0-1) ...
+Purging configuration files for libglib2.0-0:amd64 (2.42.0-1) ...
Removing libffi6:amd64 (3.1-2) ...
Purging configuration files for libffi6:amd64 (3.1-2) ...
Removing libmagic1:amd64 (1:5.19-2) ...
Purging configuration files for libmagic1:amd64 (1:5.19-2) ...
-Removing libpipeline1:amd64 (1.3.0-1) ...
-Purging configuration files for libpipeline1:amd64 (1.3.0-1) ...
+Removing libpipeline1:amd64 (1.3.1-1) ...
+Purging configuration files for libpipeline1:amd64 (1.3.1-1) ...
Removing libunistring0:amd64 (0.9.3-5.2) ...
Purging configuration files for libunistring0:amd64 (0.9.3-5.2) ...
Removing libxml2:amd64 (2.9.1+dfsg1-4) ...
@@ -1609,20 +1620,20 @@ Processing triggers for libc-bin (2.19-11) ...
└──────────────────────────────────────────────────────────────────────────────┘
Build Architecture: amd64
-Build-Space: 38796
-Build-Time: 108
+Build-Space: 37700
+Build-Time: 82
Distribution: unstable
Host Architecture: amd64
-Install-Time: 14
-Job: htslib_1.0-2.dsc
+Install-Time: 25
+Job: htslib_1.1-1.dsc
Lintian: pass
Machine Architecture: amd64
Package: htslib
-Package-Time: 130
-Source-Version: 1.0-2
-Space: 38796
+Package-Time: 114
+Source-Version: 1.1-1
+Space: 37700
Status: successful
-Version: 1.0-2
+Version: 1.1-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20140916-2037
-Build needed 00:02:10, 38796k disc space
+Finished at 20140924-2129
+Build needed 00:01:54, 37700k disc space
--
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/htslib.git
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