[med-svn] r19036 - trunk/packages/acacia/trunk/debian

[Timothy Booth]

Author: tbooth-guest
Date: 2015-04-09 15:51:02 +0000 (Thu, 09 Apr 2015)
New Revision: 19036

Modified:
   trunk/packages/acacia/trunk/debian/changelog
   trunk/packages/acacia/trunk/debian/control
   trunk/packages/acacia/trunk/debian/watch
Log:
Confirmed to work with libcolt-free-java


Modified: trunk/packages/acacia/trunk/debian/changelog
===================================================================
--- trunk/packages/acacia/trunk/debian/changelog	2015-04-09 00:35:49 UTC (rev 19035)
+++ trunk/packages/acacia/trunk/debian/changelog	2015-04-09 15:51:02 UTC (rev 19036)
@@ -1,3 +1,15 @@
+acacia (1.53-0biolinux2) trusty; urgency=medium
+
+  * Version bump to force rebuild against libcolt-free-java
+
+ -- Tim Booth <tbooth at ceh.ac.uk>  Thu, 09 Apr 2015 15:12:34 +0100
+
+acacia (1.53-0biolinux1.1) trusty; urgency=low
+
+  * Rebuild for trusty
+
+ -- Tim Booth <tbooth at ceh.ac.uk>  Tue, 03 Jun 2014 12:03:22 +0100
+
 acacia (1.53-0biolinux1) precise; urgency=low
 
   * Initial release for Bio-Linux.

Modified: trunk/packages/acacia/trunk/debian/control
===================================================================
--- trunk/packages/acacia/trunk/debian/control	2015-04-09 00:35:49 UTC (rev 19035)
+++ trunk/packages/acacia/trunk/debian/control	2015-04-09 15:51:02 UTC (rev 19036)
@@ -11,7 +11,8 @@
                libbiojava1.7-java,
                libhac-java,
                libcommons-cli-java,
-               libcommons-math3-java
+               libcommons-math3-java,
+               libcolt-free-java
 Standards-Version: 3.9.5
 Homepage: http://sourceforge.net/projects/acaciaerrorcorr/
 
@@ -33,3 +34,7 @@
  regions where there are more `errors' than expected by chance - these imply
  that the differences are due to population differences rather than
  error-induced polymorphisms.
+ .
+ Nat Methods. 2012 Apr 27;9(5):425-6. doi: 10.1038/nmeth.1990.
+ Fast, accurate error-correction of amplicon pyrosequences using Acacia.
+ Bragg L, Stone G, Imelfort M, Hugenholtz P, Tyson GW.

Modified: trunk/packages/acacia/trunk/debian/watch
===================================================================
--- trunk/packages/acacia/trunk/debian/watch	2015-04-09 00:35:49 UTC (rev 19035)
+++ trunk/packages/acacia/trunk/debian/watch	2015-04-09 15:51:02 UTC (rev 19036)
@@ -1,4 +1,5 @@
 version=3
 # There is a source dump on SF.net but actually the latest code is on GitHub
-# https://github.com/LBragg/Acacia
-http://sf.net/acaciaerrorcorr/Acacia-([0-9.]+)_src.(?:tar.gz|.tar.bz2|.tgz)
+#http://sf.net/acaciaerrorcorr/Acacia-([0-9.]+)_src.(?:tar.gz|.tar.bz2|.tgz)
+
+https://github.com/LBragg/Acacia/releases .*/archive/v?([0-9.]+).tar.gz