[med-svn] [python-cobra] 01/05: Imported Upstream version 0.4.0b2
Afif Elghraoui
afif-guest at moszumanska.debian.org
Wed Aug 5 03:31:54 UTC 2015
This is an automated email from the git hooks/post-receive script.
afif-guest pushed a commit to branch master
in repository python-cobra.
commit eb3fb84c122aee7bb6f0690e09558ff5140327b9
Author: Afif Elghraoui <afif at ghraoui.name>
Date: Tue Aug 4 18:52:33 2015 -0700
Imported Upstream version 0.4.0b2
---
.travis.yml | 15 +-
INSTALL.md | 10 +-
appveyor.yml | 14 +-
cobra/VERSION | 2 +-
cobra/core/Gene.py | 39 +-
cobra/core/Metabolite.py | 2 +-
cobra/core/Model.py | 26 +-
cobra/core/Object.py | 41 +-
cobra/core/Reaction.py | 32 +-
cobra/core/Species.py | 15 +-
cobra/io/json.py | 203 +-
cobra/io/mat.py | 25 +-
cobra/io/sbml.py | 4 +-
cobra/io/sbml3.py | 390 +-
cobra/manipulation/modify.py | 75 +-
cobra/test/__init__.py | 2 +-
cobra/test/data/mini.json | 1345 +-
cobra/test/data/mini.mat | Bin 14752 -> 14352 bytes
cobra/test/data/mini.pickle | Bin 10952 -> 25348 bytes
cobra/test/data/mini_cobra.xml | 342 +-
cobra/test/data/mini_fbc1.xml | 387 +-
cobra/test/data/mini_fbc2.xml | 1416 +-
cobra/test/data/mini_fbc2.xml.bz2 | Bin 0 -> 4939 bytes
cobra/test/data/mini_fbc2.xml.gz | Bin 0 -> 5637 bytes
cobra/test/data/salmonella_fbc.xml | 77257 -----------------------------------
cobra/test/data/textbook.xml | 1562 -
cobra/test/data/textbook.xml.gz | Bin 0 -> 16329 bytes
cobra/test/data/textbook_fva.json | 1 +
cobra/test/data/update_pickles.py | 115 +-
cobra/test/flux_analysis.py | 52 +-
cobra/test/io_tests.py | 80 +-
cobra/test/unit_tests.py | 3 +
documentation_builder/io.ipynb | 37 +-
setup.py | 3 +-
34 files changed, 3767 insertions(+), 79728 deletions(-)
diff --git a/.travis.yml b/.travis.yml
index bda84cc..fe99e32 100644
--- a/.travis.yml
+++ b/.travis.yml
@@ -1,17 +1,24 @@
language: python
sudo: false
+cache:
+ directories:
+ - $HOME/.cache/pip
python:
- - "2.7"
- - "3.4"
+ - "2.7"
+ - "3.4"
# command to install dependencies
+env:
+ - PIP_CACHE_DIR=$HOME/.cache/pip
before_install:
+ - pip install pip --upgrade
- export PIP_OPTS="-f https://opencobra.github.io/pypi_cobrapy_travis --no-index"
+ - pip install cython coveralls # these guys get cached
+ - if [[ $TRAVIS_PYTHON_VERSION == 2* ]]; then pip install lxml; fi # cached
+ - pip install numpy scipy python-libsbml-experimental $PIP_OPTS # download wheels
- if [[ $TRAVIS_PYTHON_VERSION == 2* ]]; then pip install glpk cylp $PIP_OPTS; fi
- - pip install python-libsbml-experimental cython numpy scipy $PIP_OPTS
- wget https://opencobra.github.io/pypi_cobrapy_travis/travis_test_dependencies.zip # esolver, and glpk
- unzip travis_test_dependencies.zip
- export PATH=$PATH:$PWD
- - pip install coveralls
install:
- python setup.py develop
# # command to run tests
diff --git a/INSTALL.md b/INSTALL.md
index 5c3f978..5b5ea8e 100644
--- a/INSTALL.md
+++ b/INSTALL.md
@@ -19,18 +19,22 @@ cobrapy, they are not explicitly supported at this time.
## Stable version installation
### Mac OS X
-0. [install pip] (http://pip.readthedocs.org/en/latest/installing.html).
+0. [install pip](http://pip.readthedocs.org/en/latest/installing.html).
1. In a terminal, run ```sudo pip install cobra```
### GNU/Linux
-0. [install pip] (http://pip.readthedocs.org/en/latest/installing.html).
+0. [install pip](http://pip.readthedocs.org/en/latest/installing.html).
1. Install the python and glpk development libraries. On debian-based
systems (including Ubuntu and Mint), this can be done with
```sudo apt-get install python-dev libglpk-dev```
3. In a terminal, run ```sudo pip install cobra```
### Microsoft Windows
-If you use pip in Windows, you can simply do ```pip install cobra```.
+The preferred installation method on Windows is also to use pip. The latest
+Windows installers for Python 2.7 and 3.4 include pip, so if you use those you
+will already have pip.
+1. In a terminal, run ```C:\Python27\Scripts\pip.exe install cobra```
+ (you may need to adjust the path accordingly).
To install without pip, you will need to download and use the appropriate
installer for your version of python from the [python package
diff --git a/appveyor.yml b/appveyor.yml
index cf97d47..6f2033e 100644
--- a/appveyor.yml
+++ b/appveyor.yml
@@ -8,24 +8,31 @@ environment:
matrix:
- PYTHON: "C:\\Python27"
- PYTHON_VERSION: "2.7.8"
+ PYTHON_VERSION: "2.7.9"
+ PYTHON_ARCH: "32"
+
+ - PYTHON: "C:\\Python34"
+ PYTHON_VERSION: "3.4.3"
PYTHON_ARCH: "32"
- PYTHON: "C:\\Python27-x64"
- PYTHON_VERSION: "2.7.8"
+ PYTHON_VERSION: "2.7.9"
PYTHON_ARCH: "64"
WINDOWS_SDK_VERSION: "v7.0"
- PYTHON: "C:\\Python34-x64"
- PYTHON_VERSION: "3.4.1"
+ PYTHON_VERSION: "3.4.3"
PYTHON_ARCH: "64"
WINDOWS_SDK_VERSION: "v7.1"
+clone_depth: 25
+
init:
- "ECHO %PYTHON% %PYTHON_VERSION% %PYTHON_ARCH%"
install:
- "powershell appveyor\\install.ps1"
+ - ps: Start-FileDownload 'https://opencobra.github.io/pypi_cobrapy_travis/six.py'
# Download glpk.h and glpk.lib (separate files for 32/64 bit)
- ps: Start-FileDownload 'https://opencobra.github.io/pypi_cobrapy_travis/glpk.h'
- "appveyor DownloadFile https://opencobra.github.io/pypi_cobrapy_travis/glpk.lib%PYTHON_ARCH% -FileName glpk.lib"
@@ -38,6 +45,7 @@ test_script:
after_test:
- "%WITH_COMPILER% %PYTHON%/python setup.py bdist_wheel"
+ - "%WITH_COMPILER% %PYTHON%/python setup.py bdist_wininst"
artifacts:
- path: dist\*
diff --git a/cobra/VERSION b/cobra/VERSION
index 88b0e14..b49a8bd 100644
--- a/cobra/VERSION
+++ b/cobra/VERSION
@@ -1 +1 @@
-0.4.0b1
+0.4.0b2
diff --git a/cobra/core/Gene.py b/cobra/core/Gene.py
index e7b4d84..9a608e8 100644
--- a/cobra/core/Gene.py
+++ b/cobra/core/Gene.py
@@ -27,18 +27,31 @@ replacements = (
# functions for gene reaction rules
-def ast2str(expr, level=0):
- """convert compiled ast to gene_reaction_rule str"""
+def ast2str(expr, level=0, names=None):
+ """convert compiled ast to gene_reaction_rule str
+
+ expr: str of a gene reaction rule
+
+ level: internal use only
+
+ names: optional dict of {Gene.id: Gene.name}
+ Use this to get a rule str which uses names instead. This
+ should be done for display purposes only. All gene_reaction_rule
+ strings which are computed with should use the id.
+ """
if isinstance(expr, Expression):
- return ast2str(expr.body, 0) if hasattr(expr, "body") else ""
+ return ast2str(expr.body, 0, names) \
+ if hasattr(expr, "body") else ""
elif isinstance(expr, Name):
- return expr.id
+ return names.get(expr.id, expr.id) if names else expr.id
elif isinstance(expr, BoolOp):
op = expr.op
if isinstance(op, Or):
- str_exp = " or ".join(ast2str(i, level + 1) for i in expr.values)
+ str_exp = " or ".join(ast2str(i, level + 1, names)
+ for i in expr.values)
elif isinstance(op, And):
- str_exp = " and ".join(ast2str(i, level + 1) for i in expr.values)
+ str_exp = " and ".join(ast2str(i, level + 1, names)
+ for i in expr.values)
else:
raise TypeError("unsupported operation " + op.__class__.__name)
return "(" + str_exp + ")" if level else str_exp
@@ -80,8 +93,9 @@ class GPRCleaner(NodeTransformer):
def visit_Name(self, node):
if node.id.startswith("__cobra_escape__"):
node.id = node.id[16:]
- for replacement in replacements:
- node.id = node.id.replace(replacement[1], replacement[0])
+ for char, escaped in replacements:
+ if escaped in node.id:
+ node.id = node.id.replace(escaped, char)
self.gene_set.add(node.id)
return node
@@ -103,8 +117,9 @@ def parse_gpr(str_expr):
str_expr = str_expr.strip()
if len(str_expr) == 0:
return None, set()
- for replacement in replacements:
- str_expr = str_expr.replace(replacement[0], replacement[1])
+ for char, escaped in replacements:
+ if char in str_expr:
+ str_expr = str_expr.replace(char, escaped)
escaped_str = keyword_re.sub("__cobra_escape__", str_expr)
escaped_str = number_start_re.sub("__cobra_escape__", escaped_str)
tree = ast_parse(escaped_str, "<string>", "eval")
@@ -116,7 +131,7 @@ def parse_gpr(str_expr):
class Gene(Species):
- def __init__(self, id, name=None, functional=True):
+ def __init__(self, id=id, name=None, functional=True):
"""
id: A string.
@@ -127,7 +142,7 @@ class Gene(Species):
can its products be used.
"""
- Species.__init__(self, id, name=name)
+ Species.__init__(self, id=id, name=name)
self.functional = functional
def remove_from_model(self, model=None,
diff --git a/cobra/core/Metabolite.py b/cobra/core/Metabolite.py
index d52094d..1a3b139 100644
--- a/cobra/core/Metabolite.py
+++ b/cobra/core/Metabolite.py
@@ -132,7 +132,7 @@ class Metabolite(Species):
the_coefficient = the_reaction._metabolites[self]
the_reaction.subtract_metabolites({self: the_coefficient})
elif method.lower() == 'destructive':
- for x in self._reaction():
+ for x in self._reaction:
x.remove_from_model()
else:
raise Exception(method + " is not 'subtractive' or 'destructive'")
diff --git a/cobra/core/Model.py b/cobra/core/Model.py
index ef9d21e..9ab90db 100644
--- a/cobra/core/Model.py
+++ b/cobra/core/Model.py
@@ -27,13 +27,17 @@ class Model(Object):
for y in ['reactions', 'genes', 'metabolites']:
for x in getattr(self, y):
x._model = self
-
- def __init__(self, description=None):
- if isinstance(description, Model):
- self.__dict__ = description.__dict__
+ if not hasattr(self, "name"):
+ self.name = None
+
+ def __init__(self, id_or_model=None, name=None):
+ if isinstance(id_or_model, Model):
+ Object.__init__(self, name=name)
+ self.__setstate__(id_or_model.__dict__)
+ if not hasattr(self, "name"):
+ self.name = None
else:
- Object.__init__(self, description)
- self.description = self.id
+ Object.__init__(self, id_or_model, name=name)
self._trimmed = False
self._trimmed_genes = []
self._trimmed_reactions = {}
@@ -44,6 +48,16 @@ class Model(Object):
self.compartments = {}
self.solution = Solution(None)
+ @property
+ def description(self):
+ warn("description deprecated")
+ return self.name if self.name is not None else ""
+
+ @description.setter
+ def description(self, value):
+ self.name = value
+ warn("description deprecated")
+
def __add__(self, other_model):
"""Adds two models. +
diff --git a/cobra/core/Object.py b/cobra/core/Object.py
index 5311b79..03ce0bb 100644
--- a/cobra/core/Object.py
+++ b/cobra/core/Object.py
@@ -4,17 +4,14 @@ from six import iteritems
class Object(object):
"""Defines common behavior of object in cobra.core"""
- def __init__(self, id=None, mnx_id=None):
+ def __init__(self, id=None, name=None):
"""
id: None or a string
- mnx_id: None or a String of the MetaNetX.org ID for the Object
"""
self.id = id
- self.mnx_id = mnx_id
- # The following two fields will eventually
- # be objects that enforce basic rules about
- # formatting notes and annotation
+ self.name = name
+
self.notes = {}
self.annotation = {}
@@ -25,38 +22,6 @@ class Object(object):
state['_model'] = None
return state
- def guided_copy(self):
- """.. deprecated :: 0.3 use copy direclty"""
- the_copy = self.__class__(self.id)
- for k, v in iteritems(self.__dict__):
- # Don't try to set properties
- if not isinstance(getattr(type(self), k, None), property):
- setattr(the_copy, k, v)
- return(the_copy)
-
- def _copy_parent_attributes(self, gene_object):
- """Helper function for shallow copying attributes from a parent object
- into a new child object.
-
- """
- for k, v in iteritems(gene_object.__dict__):
- setattr(self, k, v)
-
- def startswith(self, x):
- return self.id.startswith(x)
-
- def endswith(self, x):
- return self.id.endswith(x)
-
- def __contains__(self, x):
- return self.id.__contains__(x)
-
- def __getitem__(self, index):
- return self.id[index]
-
- def __getslice__(self, i, j):
- return self.id[i:j]
-
def __repr__(self):
return "<%s %s at 0x%x>" % (self.__class__.__name__, self.id, id(self))
diff --git a/cobra/core/Reaction.py b/cobra/core/Reaction.py
index 67103fd..96346d8 100644
--- a/cobra/core/Reaction.py
+++ b/cobra/core/Reaction.py
@@ -8,7 +8,7 @@ from warnings import warn
from six import string_types, iteritems
from .Object import Object
-from .Gene import Gene, parse_gpr
+from .Gene import Gene, parse_gpr, ast2str
from .Metabolite import Metabolite
@@ -67,13 +67,10 @@ class Reaction(Object):
self.objective_coefficient = self.lower_bound = 0.
self.upper_bound = 1000.
- # Either None or if this reaction is irreversible then
- self.reflection = None
- # a reaction in the model that is essentially self * -1
# Used during optimization. Indicates whether the
- self.variable_kind = 'continuous'
# variable is modeled as continuous, integer, binary, semicontinous, or
# semiinteger.
+ self.variable_kind = 'continuous'
# read-only
@property
@@ -93,7 +90,7 @@ class Reaction(Object):
self._gene_reaction_rule = new_rule.strip()
try:
_, gene_names = parse_gpr(self._gene_reaction_rule)
- except (SyntaxError, TypeError):
+ except (SyntaxError, TypeError) as e:
warn("malformed gene_reaction_rule '%s' for %s" %
(new_rule, repr(self)))
tmp_str = and_or_search.sub('', self._gene_reaction_rule)
@@ -129,6 +126,19 @@ class Reaction(Object):
(g.id, self.id))
@property
+ def gene_name_reaction_rule(self):
+ """Display gene_reaction_rule with names intead.
+
+ Do NOT use this string for computation. It is intended to give a
+ representation of the rule using more familiar gene names instead of
+ the often cryptic ids.
+
+ """
+ names = {i.id: i.name for i in self._genes}
+ ast = parse_gpr(self._gene_reaction_rule)[0]
+ return ast2str(ast, names=names)
+
+ @property
def x(self):
"""The flux through the reaction in the most recent solution
@@ -523,13 +533,17 @@ class Reaction(Object):
return reaction_string
def check_mass_balance(self):
- """Makes sure that the reaction is elementally-balanced.
+ """Compute mass and charge balance for the reaction
returns a dict of {element: amount} for unbalanced elements.
+ "charge" is treated as an element in this dict
This should be empty for balanced reactions.
"""
reaction_element_dict = defaultdict(int)
for metabolite, coefficient in self._metabolites.items():
+ if metabolite.charge is not None:
+ reaction_element_dict["charge"] += \
+ coefficient * metabolite.charge
for element, amount in iteritems(metabolite.elements):
reaction_element_dict[element] += coefficient * amount
# filter out 0 values
@@ -565,7 +579,7 @@ class Reaction(Object):
def build_reaction_from_string(self, reaction_str, verbose=True,
fwd_arrow=None, rev_arrow=None,
- reversible_arrow=None):
+ reversible_arrow=None, term_split="+"):
# set the arrows
forward_arrow_finder = _forward_arrow_finder if fwd_arrow is None \
else re.compile(re.escape(fwd_arrow))
@@ -615,7 +629,7 @@ class Reaction(Object):
for substr, factor in ((reactant_str, -1), (product_str, 1)):
if len(substr) == 0:
continue
- for term in substr.split("+"):
+ for term in substr.split(term_split):
term = term.strip()
if term.lower() == "nothing":
continue
diff --git a/cobra/core/Species.py b/cobra/core/Species.py
index 4dcc21e..fc51cdd 100644
--- a/cobra/core/Species.py
+++ b/cobra/core/Species.py
@@ -17,10 +17,7 @@ class Species(Object):
name: String. A human readable name.
"""
- Object.__init__(self, id)
- self.name = name
- if not name:
- self.name = self.id
+ Object.__init__(self, id, name)
self._model = None
# references to reactions that operate on this species
self._reaction = set()
@@ -48,16 +45,6 @@ class Species(Object):
"""
return deepcopy(self)
- def get_reaction(self):
- """Returns a list of Reactions that contain this Species"""
- warn("deprecated, used species.reactions instead")
- return list(self._reaction)
-
- def get_model(self):
- """Returns the Model object that contain this Object"""
- print("get_model is deprecated. used model property instead")
- return self._model
-
@property
def model(self):
return(self._model)
diff --git a/cobra/io/json.py b/cobra/io/json.py
index 5344f83..9bdc1ca 100644
--- a/cobra/io/json.py
+++ b/cobra/io/json.py
@@ -3,7 +3,7 @@ from __future__ import absolute_import
import json
from warnings import warn
-from .. import Model, Metabolite, Reaction
+from .. import Model, Metabolite, Reaction, Gene
from six import iteritems, string_types
# Detect numpy types to replace them.
@@ -16,16 +16,39 @@ except ImportError:
class bool_:
pass
-_DEFAULT_REACTION_ATTRIBUTES = {
- 'id', 'name', 'subsystem', 'lower_bound', 'upper_bound',
- 'objective_coefficient', 'notes', 'gene_reaction_rule', 'variable_kind'}
+_REQUIRED_REACTION_ATTRIBUTES = {"id", "name", "metabolites", "lower_bound",
+ "upper_bound", "gene_reaction_rule"}
+_OPTIONAL_REACTION_ATTRIBUTES = {
+ "objective_coefficient": 0,
+ "variable_kind": "continuous",
+ "subsystem": "",
+ "notes": {},
+ "annotation": {},
+}
-_DEFAULT_METABOLITE_ATTRIBUTES = {
- 'id', 'annotation', 'charge', 'compartment', 'formula', 'name', 'notes',
- '_bound', '_constraint_sense'}
+_REQUIRED_METABOLITE_ATTRIBUTES = {"id", "name", "compartment"}
+_OPTIONAL_METABOLITE_ATTRIBUTES = {
+ "charge": None,
+ "formula": None,
+ "_bound": 0,
+ "_constraint_sense": "E",
+ "notes": {},
+ "annotation": {},
+}
-_DEFAULT_GENE_ATTRIBUTES = {
- 'id', 'name'}
+_REQUIRED_GENE_ATTRIBUTES = {"id", "name"}
+_OPTIONAL_GENE_ATTRIBUTES = {
+ "notes": {},
+ "annotation": {},
+}
+
+_OPTIONAL_MODEL_ATTRIBUTES = {
+ "name": None,
+ # "description": None, should not actually be included
+ "compartments": {},
+ "notes": {},
+ "annotation": {},
+}
def _fix_type(value):
@@ -56,6 +79,12 @@ def _from_dict(obj):
setattr(new_metabolite, k, v)
new_metabolites.append(new_metabolite)
model.add_metabolites(new_metabolites)
+ # add genes
+ for gene in obj['genes']:
+ new_gene = Gene(gene["id"])
+ for k, v in iteritems(gene):
+ setattr(new_gene, k, _fix_type(v))
+ model.genes.append(new_gene)
# add reactions
new_reactions = []
for reaction in obj['reactions']:
@@ -71,32 +100,30 @@ def _from_dict(obj):
setattr(new_reaction, k, _fix_type(v))
new_reactions.append(new_reaction)
model.add_reactions(new_reactions)
- # add gene attributes
- for gene in obj['genes']:
- if gene['id'] in model.genes:
- new_gene = model.genes.get_by_id(gene['id'])
- for k, v in iteritems(gene):
- # don't set the id
- if k == 'id':
- continue
- setattr(new_gene, k, _fix_type(v))
for k, v in iteritems(obj):
- if k in ['id', 'description', 'notes']:
+ if k in {'id', 'name', 'notes', 'compartments', 'annotation'}:
setattr(model, k, v)
return model
+def _update_optional(cobra_object, new_dict, optional_attribute_dict):
+ """update new_dict with optional attributes from cobra_object"""
+ for key, default_value in iteritems(optional_attribute_dict):
+ value = getattr(cobra_object, key)
+ if value != default_value:
+ new_dict[key] = _fix_type(value)
+
+
def _to_dict(model):
"""convert the model to a dict"""
- reaction_attributes = _DEFAULT_REACTION_ATTRIBUTES
- metabolite_attributes = _DEFAULT_METABOLITE_ATTRIBUTES
- gene_attributes = _DEFAULT_GENE_ATTRIBUTES
new_reactions = []
new_metabolites = []
new_genes = []
for reaction in model.reactions:
new_reaction = {key: _fix_type(getattr(reaction, key))
- for key in reaction_attributes}
+ for key in _REQUIRED_REACTION_ATTRIBUTES
+ if key != "metabolites"}
+ _update_optional(reaction, new_reaction, _OPTIONAL_REACTION_ATTRIBUTES)
# set metabolites
mets = {str(met): coeff for met, coeff
in iteritems(reaction._metabolites)}
@@ -104,18 +131,24 @@ def _to_dict(model):
new_reactions.append(new_reaction)
for metabolite in model.metabolites:
new_metabolite = {key: _fix_type(getattr(metabolite, key))
- for key in metabolite_attributes}
+ for key in _REQUIRED_METABOLITE_ATTRIBUTES}
+ _update_optional(metabolite, new_metabolite,
+ _OPTIONAL_METABOLITE_ATTRIBUTES)
new_metabolites.append(new_metabolite)
for gene in model.genes:
new_gene = {key: str(getattr(gene, key))
- for key in gene_attributes}
+ for key in _REQUIRED_GENE_ATTRIBUTES}
+ _update_optional(gene, new_gene, _OPTIONAL_GENE_ATTRIBUTES)
new_genes.append(new_gene)
obj = {'reactions': new_reactions,
'metabolites': new_metabolites,
'genes': new_genes,
'id': model.id,
- 'description': model.description,
- 'notes': model.notes}
+ }
+
+ _update_optional(model, obj, _OPTIONAL_MODEL_ATTRIBUTES)
+ # add in the JSON version
+ obj["version"] = 1
return obj
@@ -149,7 +182,7 @@ def load_json_model(file_name):
return model
-def save_json_model(model, file_name):
+def save_json_model(model, file_name, pretty=False):
"""Save the cobra model as a json file.
model : :class:`~cobra.core.Model.Model` object
@@ -163,7 +196,119 @@ def save_json_model(model, file_name):
file_name = open(file_name, 'w')
should_close = True
- json.dump(_to_dict(model), file_name, allow_nan=False)
+ if pretty:
+ dump_opts = {"indent": 4, "separators": (",", ": "), "sort_keys": True}
+ else:
+ dump_opts = {}
+
+ json.dump(_to_dict(model), file_name, allow_nan=False, **dump_opts)
if should_close:
file_name.close()
+
+
+json_schema = {
+ "$schema": "http://json-schema.org/draft-04/schema#",
+ "title": "COBRA",
+ "description": "JSON representation of COBRA model",
+ "type": "object",
+ "properties": {
+ "id": {"type": "string"},
+ "name": {"type": "string"},
+ "description": {"type": "string"},
+ "version": {
+ "type": "integer",
+ "default": 1,
+ },
+
+ "reactions": {
+ "type": "array",
+ "items": {
+ "type": "object",
+ "properties": {
+ "id": {"type": "string"},
+ "name": {"type": "string"},
+ "metabolites": {
+ "type": "object",
+ "patternProperties": {
+ ".*": {"type": "number"},
+ }
+ },
+ "gene_reaction_rule": {"type": "string"},
+ "lower_bound": {"type": "number"},
+ "upper_bound": {"type": "number"},
+ "objective_coefficient": {
+ "type": "number",
+ "default": 0,
+ },
+ "variable_kind": {
+ "type": "string",
+ "pattern": "integer|continuous",
+ "default": "continuous"
+ },
+ "subsystem": {"type": "string"},
+ "notes": {"type": "object"},
+ "annotation": {"type": "object"},
+ },
+ "required": ["id", "name", "metabolites", "lower_bound",
+ "upper_bound", "gene_reaction_rule"],
+ "additionalProperties": False,
+ }
+ },
+ "metabolites": {
+ "type": "array",
+ "items": {
+ "type": "object",
+ "properties": {
+ "id": {"type": "string"},
+ "name": {"type": "string"},
+ "compartment": {
+ "type": "string",
+ "pattern": "[a-z]{1,2}"
+ },
+ "charge": {"type": "integer"},
+ "formula": {"type": "string"},
+ "_bound": {
+ "type": "number",
+ "default": 0
+ },
+ "_constraint_sense": {
+ "type": "string",
+ "default": "E",
+ "pattern": "E|L|G",
+ },
+ "notes": {"type": "object"},
+ "annotation": {"type": "object"},
+ },
+ "required": ["id", "name", "compartment"],
+ "additionalProperties": False,
+ }
+
+ },
+ "genes": {
+ "type": "array",
+ "items": {
+ "type": "object",
+ "properties": {
+ "id": {"type": "string"},
+ "name": {"type": "string"},
+ "notes": {"type": "object"},
+ "annotation": {"type": "object"},
+ },
+ "required": ["id", "name"],
+ "additionalProperties": False,
+ }
+
+ },
+ "compartments": {
+ "type": "object",
+ "patternProperties": {
+ "[a-z]{1,2}": {"type": "string"}
+ }
+ },
+ "notes": {"type": "object"},
+ "annotation": {"type": "object"},
+ },
+ "required": ["id", "reactions", "metabolites", "genes"],
+ "additionalProperties": False,
+}
diff --git a/cobra/io/mat.py b/cobra/io/mat.py
index 34e31b5..6f665e6 100644
--- a/cobra/io/mat.py
+++ b/cobra/io/mat.py
@@ -56,22 +56,14 @@ def load_matlab_model(infile_path, variable_name=None):
"""
data = loadmat(infile_path)
+ if variable_name is None:
+ # skip meta variables
+ meta_vars = {"__globals__", "__header__", "__version__"}
+ possible_names = sorted(i for i in data if i not in meta_vars)
+ if len(possible_names) == 1:
+ variable_name = possible_names[0]
if variable_name is not None:
return from_mat_struct(data[variable_name], model_id=variable_name)
- else:
- # will try all of the variables in the dict
- possible_names = {}
- for key in data.keys():
- possible_names[key] = None
- # skip meta variables
- to_remove = ["__globals__", "__header__", "__version__"]
- to_pop = []
- for name in possible_names:
- if name in to_remove:
- to_pop.append(name)
- for i in to_pop:
- possible_names.pop(i)
- possible_names = possible_names.keys()
for possible_name in possible_names:
try:
return from_mat_struct(data[possible_name], model_id=possible_name)
@@ -92,7 +84,7 @@ def save_matlab_model(model, file_name):
"""
mat = create_mat_dict(model)
- savemat(file_name, {str(model.description): mat},
+ savemat(file_name, {str(model.id): mat},
appendmat=True, oned_as="column")
@@ -119,7 +111,7 @@ def create_mat_dict(model):
mat["b"] = array(mets.list_attr("_bound")) * 1.
mat["c"] = array(rxns.list_attr("objective_coefficient")) * 1.
mat["rev"] = array(rxns.list_attr("reversibility")) * 1
- mat["description"] = str(model.description)
+ mat["description"] = str(model.id)
return mat
@@ -146,7 +138,6 @@ def from_mat_struct(mat_struct, model_id=None):
model.id = model_id
else:
model.id = "imported_model"
- model.description = model.id
for i, name in enumerate(m["mets"][0, 0]):
new_metabolite = Metabolite()
new_metabolite.id = str(name[0][0])
diff --git a/cobra/io/sbml.py b/cobra/io/sbml.py
index 0f960a3..9002041 100644
--- a/cobra/io/sbml.py
+++ b/cobra/io/sbml.py
@@ -294,7 +294,7 @@ def create_cobra_model_from_sbml_file(sbml_filename, old_sbml=False, legacy_meta
#Now, add all of the reactions to the model.
- cobra_model.description = sbml_model.getId()
+ cobra_model.id = sbml_model.getId()
#Populate the compartment list - This will be done based on cobra.Metabolites
#in cobra.Reactions in the future.
cobra_model.compartments = compartment_dict
@@ -364,7 +364,7 @@ def write_cobra_model_to_sbml_file(cobra_model, sbml_filename,
sbml_doc = SBMLDocument(sbml_level, sbml_version)
- sbml_model = sbml_doc.createModel(cobra_model.description.split('.')[0])
+ sbml_model = sbml_doc.createModel(cobra_model.id.split('.')[0])
#Note need to set units
reaction_units = 'mmol_per_gDW_per_hr'
model_units = sbml_model.createUnitDefinition()
diff --git a/cobra/io/sbml3.py b/cobra/io/sbml3.py
index 0f85929..f699928 100644
--- a/cobra/io/sbml3.py
+++ b/cobra/io/sbml3.py
@@ -1,20 +1,31 @@
from collections import defaultdict
-from warnings import warn
+from warnings import warn, catch_warnings, simplefilter
from decimal import Decimal
+from math import isinf, isnan
from ast import parse as ast_parse, Name, Or, And, BoolOp
+from gzip import GzipFile
+from bz2 import BZ2File
+from tempfile import NamedTemporaryFile
+import re
-from six import iteritems
+from six import iteritems, string_types
from .. import Metabolite, Reaction, Gene, Model
from ..core.Gene import parse_gpr
-
try:
- from xml.etree.cElementTree import parse, Element, SubElement, \
- ElementTree, tostring, register_namespace
+ from lxml.etree import parse, Element, SubElement, \
+ ElementTree, register_namespace, ParseError, XPath
+ _with_lxml = True
except ImportError:
- from xml.etree.ElementTree import parse, Element, SubElement, \
- ElementTree, tostring, register_namespace
+ warn("Install lxml for faster SBML I/O")
+ _with_lxml = False
+ try:
+ from xml.etree.cElementTree import parse, Element, SubElement, \
+ ElementTree, register_namespace, ParseError
+ except ImportError:
+ from xml.etree.ElementTree import parse, Element, SubElement, \
+ ElementTree, register_namespace, ParseError
# use sbml level 2 from sbml.py (which uses libsbml). Eventually, it would
# be nice to use the libSBML converters directly instead.
@@ -33,44 +44,93 @@ except:
pass
+_renames = (
+ (".", "_DOT_"),
+ ("(", "_LPAREN_"),
+ (")", "_RPAREN_"),
+ ("-", "__"),
+ ("[", "_LSQBKT"),
+ ("]", "_RSQBKT"),
+ (",", "_COMMA_"),
+ (":", "_COLON_"),
+ (">", "_GT_"),
+ ("<", "_LT"),
+ ("/", "_FLASH"),
+ ("\\", "_BSLASH"),
+ ("+", "_PLUS_"),
+ ("=", "_EQ_"),
+ (" ", "_SPACE_"),
+ ("'", "_SQUOT_"),
+ ('"', "_DQUOT_"),
+)
+
+
# deal with namespaces
namespaces = {"fbc": "http://www.sbml.org/sbml/level3/version1/fbc/version2",
- "sbml": "http://www.sbml.org/sbml/level3/version1/core"}
+ "sbml": "http://www.sbml.org/sbml/level3/version1/core",
+ "rdf": "http://www.w3.org/1999/02/22-rdf-syntax-ns#",
+ "bqbiol": "http://biomodels.net/biology-qualifiers/"}
for key in namespaces:
register_namespace(key, namespaces[key])
+
+def ns(query):
+ """replace prefixes with namespace"""
+ for prefix, uri in iteritems(namespaces):
+ query = query.replace(prefix + ":", "{" + uri + "}")
+ return query
+
# XPATH query wrappers
fbc_prefix = "{" + namespaces["fbc"] + "}"
sbml_prefix = "{" + namespaces["sbml"] + "}"
SBML_DOT = "__SBML_DOT__"
# FBC TAGS
-OR_TAG = "fbc:or"
-AND_TAG = "fbc:and"
-GENEREF_TAG = "fbc:geneProductRef"
-GPR_TAG = "fbc:geneProductAssociation"
-GENELIST_TAG = "fbc:listOfGeneProducts"
-GENE_TAG = "fbc:geneProduct"
+OR_TAG = ns("fbc:or")
+AND_TAG = ns("fbc:and")
+GENEREF_TAG = ns("fbc:geneProductRef")
+GPR_TAG = ns("fbc:geneProductAssociation")
+GENELIST_TAG = ns("fbc:listOfGeneProducts")
+GENE_TAG = ns("fbc:geneProduct")
# XPATHS
-BOUND_XPATH = "sbml:listOfParameters/sbml:parameter" # TODO only get constant
-COMPARTMENT_XPATH = "sbml:listOfCompartments/sbml:compartment"
+BOUND_XPATH = ns("sbml:listOfParameters/sbml:parameter[@value]")
+COMPARTMENT_XPATH = ns("sbml:listOfCompartments/sbml:compartment")
GENES_XPATH = GENELIST_TAG + "/" + GENE_TAG
-SPECIES_XPATH = "sbml:listOfSpecies/sbml:species[@boundaryCondition='%s']"
-OBJECTIVES_XPATH = ("fbc:objective[@fbc:id='%s']/"
- "fbc:listOfFluxObjectives/"
- "fbc:fluxObjective")
+SPECIES_XPATH = ns("sbml:listOfSpecies/sbml:species[@boundaryCondition='%s']")
+OBJECTIVES_XPATH = ns("fbc:objective[@fbc:id='%s']/"
+ "fbc:listOfFluxObjectives/"
+ "fbc:fluxObjective")
+if _with_lxml:
+ RDF_ANNOTATION_XPATH = ("sbml:annotation/rdf:RDF/"
+ "rdf:Description[@rdf:about=$metaid]/"
+ "*[self::bqbiol:isEncodedBy or self::bqbiol:is]/"
+ "rdf:Bag/rdf:li/@rdf:resource")
+ extract_rdf_annotation = XPath(RDF_ANNOTATION_XPATH, namespaces=namespaces,
+ smart_strings=False)
+else:
+ RDF_ANNOTATION_XPATH = ns("sbml:annotation/rdf:RDF/"
+ "rdf:Description[@rdf:about='%s']/"
+ "bqbiol:isEncodedBy/"
+ "rdf:Bag/rdf:li[@rdf:resource]")
+ def extract_rdf_annotation(sbml_element, metaid):
+ search_xpath = RDF_ANNOTATION_XPATH % metaid
+ for i in sbml_element.iterfind(search_xpath):
+ yield get_attrib(i, "rdf:resource")
+ for i in sbml_element.iterfind(search_xpath
+ .replace("isEncodedBy", "is")):
+ yield get_attrib(i, "rdf:resource")
-def ns(query):
- """replace prefixes with namespace"""
- return query.replace("fbc:", fbc_prefix).replace("sbml:", sbml_prefix)
+
+class CobraSBMLError(Exception):
+ pass
def get_attrib(tag, attribute, type=lambda x: x, require=False):
value = tag.get(ns(attribute))
if require and value is None:
- raise Exception("required attribute '%s' not found in tag '%s'" %
- (attribute, tag.tag))
+ raise CobraSBMLError("required attribute '%s' not found in tag '%s'" %
+ (attribute, tag.tag))
return type(value) if value is not None else None
@@ -80,6 +140,23 @@ def set_attrib(xml, attribute_name, value):
xml.set(ns(attribute_name), str(value))
+def parse_stream(filename):
+ """parses filename or compressed stream to xml"""
+ try:
+ if hasattr(filename, "read"):
+ return parse(filename)
+ elif filename.endswith(".gz"):
+ with GzipFile(filename) as infile:
+ return parse(infile)
+ elif filename.endswith(".bz2"):
+ with BZ2File(filename) as infile:
+ return parse(infile)
+ else:
+ return parse(filename)
+ except ParseError as e:
+ raise CobraSBMLError("Malformed XML file: " + e.message)
+
+
# string utility functions
def clip(string, prefix):
"""clips a prefix from the beginning of a string if it exists
@@ -104,35 +181,97 @@ def construct_gpr_xml(parent, expression):
if isinstance(expression, BoolOp):
op = expression.op
if isinstance(op, And):
- new_parent = SubElement(parent, ns(AND_TAG))
+ new_parent = SubElement(parent, AND_TAG)
elif isinstance(op, Or):
- new_parent = SubElement(parent, ns(OR_TAG))
+ new_parent = SubElement(parent, OR_TAG)
else:
raise Exception("unsupported operation " + op.__class__)
for arg in expression.values:
construct_gpr_xml(new_parent, arg)
elif isinstance(expression, Name):
- gene_elem = SubElement(parent, ns(GENEREF_TAG))
+ gene_elem = SubElement(parent, GENEREF_TAG)
set_attrib(gene_elem, "fbc:geneProduct", "G_" + expression.id)
else:
raise Exception("unsupported operation " + repr(expression))
+def annotate_cobra_from_sbml(cobra_element, sbml_element):
+ sbo_term = sbml_element.get("sboTerm")
+ if sbo_term is not None:
+ cobra_element.annotation["SBO"] = sbo_term
+ meta_id = get_attrib(sbml_element, "metaid")
+ if meta_id is None:
+ return
+ annotation = cobra_element.annotation
+ for uri in extract_rdf_annotation(sbml_element, metaid="#" + meta_id):
+ if not uri.startswith("http://identifiers.org/"):
+ warn("%s does not start with http://identifiers.org/" % uri)
+ continue
+ try:
+ provider, identifier = uri[23:].split("/")
+ except ValueError:
+ warn("%s does not conform to http://identifiers.org/provider/id"
+ % uri)
+ continue
+ # handle multiple id's in the same database
+ if provider in annotation:
+ # make into a list if necessary
+ if isinstance(annotation[provider], string_types):
+ annotation[provider] = [annotation[provider]]
+ annotation[provider].append(identifier)
+ else:
+ cobra_element.annotation[provider] = identifier
+
+
+def annotate_sbml_from_cobra(sbml_element, cobra_element):
+ if len(cobra_element.annotation) == 0:
+ return
+ # get the id so we can set the metaid
+ tag = sbml_element.tag
+ if tag.startswith(sbml_prefix) or tag[0] != "{":
+ prefix = ""
+ elif tag.startswith(fbc_prefix):
+ prefix = fbc_prefix
+ else:
+ raise ValueError("Can not annotate " + repr(sbml_element))
+ id = sbml_element.get(prefix + "id")
+ if len(id) == 0:
+ raise ValueError("%s does not have id set" % repr(sbml_element))
+ set_attrib(sbml_element, "metaid", id)
+ annotation = SubElement(sbml_element, ns("sbml:annotation"))
+ rdf_desc = SubElement(SubElement(annotation, ns("rdf:RDF")),
+ ns("rdf:Description"))
+ set_attrib(rdf_desc, "rdf:about", "#" + id)
+ bag = SubElement(SubElement(rdf_desc, ns("bqbiol:is")),
+ ns("rdf:Bag"))
+ for provider, identifiers in sorted(iteritems(cobra_element.annotation)):
+ if provider == "SBO":
+ set_attrib(sbml_element, "sboTerm", identifiers)
+ continue
+ if isinstance(identifiers, string_types):
+ identifiers = (identifiers,)
+ for identifier in identifiers:
+ li = SubElement(bag, ns("rdf:li"))
+ set_attrib(li, "rdf:resource", "http://identifiers.org/%s/%s" %
+ (provider, identifier))
+
+
def parse_xml_into_model(xml, number=float):
xml_model = xml.find(ns("sbml:model"))
if get_attrib(xml_model, "fbc:strict") != "true":
warn('loading SBML model without fbc:strict="true"')
-
+
model_id = get_attrib(xml_model, "id")
model = Model(model_id)
+ model.name = xml_model.get("name")
model.compartments = {c.get("id"): c.get("name") for c in
- xml.findall(ns(COMPARTMENT_XPATH))}
-
+ xml_model.findall(COMPARTMENT_XPATH)}
# add metabolites
- for species in xml_model.findall(ns(SPECIES_XPATH) % 'false'):
+ for species in xml_model.findall(SPECIES_XPATH % 'false'):
met = Metabolite(clip(species.get("id"), "M_"))
met.name = species.get("name")
+ annotate_cobra_from_sbml(met, species)
met.compartment = species.get("compartment")
met.charge = get_attrib(species, "fbc:charge", int)
met.formula = get_attrib(species, "fbc:chemicalFormula")
@@ -140,47 +279,46 @@ def parse_xml_into_model(xml, number=float):
# Detect boundary metabolites - In case they have been mistakenly
# added. They should not actually appear in a model
boundary_metabolites = {clip(i.get("id"), "M_")
- for i in xml_model.findall(ns(SPECIES_XPATH)
- % 'true')}
+ for i in xml_model.findall(SPECIES_XPATH % 'true')}
# add genes
- for sbml_gene in xml_model.findall(ns(GENES_XPATH)):
+ for sbml_gene in xml_model.iterfind(GENES_XPATH):
gene_id = get_attrib(sbml_gene, "fbc:id").replace(SBML_DOT, ".")
gene = Gene(clip(gene_id, "G_"))
- gene.name = get_attrib(sbml_gene, "fbc:label")
+ gene.name = get_attrib(sbml_gene, "fbc:name")
+ if gene.name is None:
+ gene.name = get_attrib(sbml_gene, "fbc:label")
+ annotate_cobra_from_sbml(gene, sbml_gene)
model.genes.append(gene)
- or_tag = ns(OR_TAG)
- and_tag = ns(AND_TAG)
- generef_tag = ns(GENEREF_TAG)
-
def process_gpr(sub_xml):
"""recursively convert gpr xml to a gpr string"""
- if sub_xml.tag == or_tag:
+ if sub_xml.tag == OR_TAG:
return "( " + ' or '.join(process_gpr(i) for i in sub_xml) + " )"
- elif sub_xml.tag == and_tag:
+ elif sub_xml.tag == AND_TAG:
return "( " + ' and '.join(process_gpr(i) for i in sub_xml) + " )"
- elif sub_xml.tag == generef_tag:
+ elif sub_xml.tag == GENEREF_TAG:
gene_id = get_attrib(sub_xml, "fbc:geneProduct", require=True)
return clip(gene_id, "G_")
else:
raise Exception("unsupported tag " + sub_xml.tag)
- # options for get_attrib for numbers
- opts = {"type": number, "require": True}
- # TODO handle infinity
- bounds = {bound.get("id"): get_attrib(bound, "value", **opts)
- for bound in xml_model.findall(ns(BOUND_XPATH))}
+ bounds = {bound.get("id"): get_attrib(bound, "value", type=number)
+ for bound in xml_model.iterfind(BOUND_XPATH)}
# add reactions
reactions = []
- for sbml_reaction in xml_model.findall(
+ for sbml_reaction in xml_model.iterfind(
ns("sbml:listOfReactions/sbml:reaction")):
reaction = Reaction(clip(sbml_reaction.get("id"), "R_"))
reaction.name = sbml_reaction.get("name")
+ annotate_cobra_from_sbml(reaction, sbml_reaction)
lb_id = get_attrib(sbml_reaction, "fbc:lowerFluxBound", require=True)
- reaction.lower_bound = bounds[lb_id]
ub_id = get_attrib(sbml_reaction, "fbc:upperFluxBound", require=True)
- reaction.upper_bound = bounds[ub_id]
+ try:
+ reaction.upper_bound = bounds[ub_id]
+ reaction.lower_bound = bounds[lb_id]
+ except KeyError as e:
+ raise CobraSBMLError("No constant bound with id '%s'" % e.message)
reactions.append(reaction)
stoichiometry = defaultdict(lambda: 0)
@@ -193,7 +331,8 @@ def parse_xml_into_model(xml, number=float):
ns("sbml:listOfProducts/sbml:speciesReference")):
met_name = clip(species_reference.get("species"), "M_")
stoichiometry[met_name] += \
- get_attrib(species_reference, "stoichiometry", **opts)
+ get_attrib(species_reference, "stoichiometry",
+ type=number, require=True)
# needs to have keys of metabolite objects, not ids
object_stoichiometry = {}
for met_id in stoichiometry:
@@ -202,13 +341,13 @@ def parse_xml_into_model(xml, number=float):
try:
metabolite = model.metabolites.get_by_id(met_id)
except KeyError:
- warn("ignoring unknown metabolite '%s' in %s" %
- (met_id, repr(reaction)))
+ warn("ignoring unknown metabolite '%s' in reaction %s" %
+ (met_id, reaction.id))
continue
object_stoichiometry[metabolite] = stoichiometry[met_id]
reaction.add_metabolites(object_stoichiometry)
# set gene reaction rule
- gpr_xml = sbml_reaction.find(ns(GPR_TAG))
+ gpr_xml = sbml_reaction.find(GPR_TAG)
if gpr_xml is not None and len(gpr_xml) != 1:
warn("ignoring invalid geneAssocation for " + repr(reaction))
gpr_xml = None
@@ -222,8 +361,11 @@ def parse_xml_into_model(xml, number=float):
# objective coefficients are handled after all reactions are added
obj_list = xml_model.find(ns("fbc:listOfObjectives"))
+ if obj_list is None:
+ warn("listOfObjectives element not found")
+ return model
target_objective = get_attrib(obj_list, "fbc:activeObjective")
- obj_query = ns(OBJECTIVES_XPATH) % target_objective
+ obj_query = OBJECTIVES_XPATH % target_objective
for sbml_objective in obj_list.findall(obj_query):
rxn_id = clip(get_attrib(sbml_objective, "fbc:reaction"), "R_")
model.reactions.get_by_id(rxn_id).objective_coefficient = \
@@ -240,6 +382,8 @@ def model_to_xml(cobra_model, units=True):
set_attrib(xml_model, "fbc:strict", "true")
if cobra_model.id is not None:
xml_model.set("id", cobra_model.id)
+ if cobra_model.name is not None:
+ xml_model.set("name", cobra_model.name)
# if using units, add in mmol/gdw/hr
if units:
@@ -308,27 +452,29 @@ def model_to_xml(cobra_model, units=True):
for met in cobra_model.metabolites:
species = SubElement(species_list, "species",
id="M_" + met.id,
- compartment=str(met.compartment),
# Useless required SBML parameters
constant="false",
boundaryCondition="false",
hasOnlySubstanceUnits="false")
set_attrib(species, "name", met.name)
+ annotate_sbml_from_cobra(species, met)
+ set_attrib(species, "compartment", met.compartment)
set_attrib(species, "fbc:charge", met.charge)
set_attrib(species, "fbc:chemicalFormula", met.formula)
# add in genes
if len(cobra_model.genes) > 0:
- genes_list = SubElement(xml_model, ns(GENELIST_TAG))
+ genes_list = SubElement(xml_model, GENELIST_TAG)
for gene in cobra_model.genes:
gene_id = gene.id.replace(".", SBML_DOT)
- sbml_gene = SubElement(genes_list, ns(GENE_TAG))
+ sbml_gene = SubElement(genes_list, GENE_TAG)
set_attrib(sbml_gene, "fbc:id", "G_" + gene_id)
name = gene.name
if name is None or len(name) == 0:
name = gene.id
set_attrib(sbml_gene, "fbc:label", gene_id)
set_attrib(sbml_gene, "fbc:name", gene.name)
+ annotate_sbml_from_cobra(sbml_gene, gene)
# add in reactions
reactions_list = SubElement(xml_model, "listOfReactions")
@@ -341,6 +487,7 @@ def model_to_xml(cobra_model, units=True):
fast="false",
reversible=str(reaction.lower_bound < 0).lower())
set_attrib(sbml_reaction, "name", reaction.name)
+ annotate_sbml_from_cobra(sbml_reaction, reaction)
# add in bounds
set_attrib(sbml_reaction, "fbc:upperFluxBound",
create_bound(reaction, "upper_bound"))
@@ -366,12 +513,12 @@ def model_to_xml(cobra_model, units=True):
reactants[met_id] = strnum(-stoichiomety)
if len(reactants) > 0:
reactant_list = SubElement(sbml_reaction, "listOfReactants")
- for met_id, stoichiomety in iteritems(reactants):
+ for met_id, stoichiomety in sorted(iteritems(reactants)):
SubElement(reactant_list, "speciesReference", species=met_id,
stoichiometry=stoichiomety, constant="true")
if len(products) > 0:
product_list = SubElement(sbml_reaction, "listOfProducts")
- for met_id, stoichiomety in iteritems(products):
+ for met_id, stoichiomety in sorted(iteritems(products)):
SubElement(product_list, "speciesReference", species=met_id,
stoichiometry=stoichiomety, constant="true")
@@ -379,7 +526,7 @@ def model_to_xml(cobra_model, units=True):
gpr = reaction.gene_reaction_rule
if gpr is not None and len(gpr) > 0:
gpr = gpr.replace(".", SBML_DOT)
- gpr_xml = SubElement(sbml_reaction, ns(GPR_TAG))
+ gpr_xml = SubElement(sbml_reaction, GPR_TAG)
try:
parsed = parse_gpr(gpr)[0]
construct_gpr_xml(gpr_xml, parsed.body)
@@ -392,23 +539,134 @@ def model_to_xml(cobra_model, units=True):
def read_sbml_model(filename, number=float, **kwargs):
- xmlfile = parse(filename)
+ xmlfile = parse_stream(filename)
xml = xmlfile.getroot()
+ # use libsbml if not l3v1 with fbc v2
if xml.get("level") != "3" or xml.get("version") != "1" or \
get_attrib(xml, "fbc:required") is None:
if libsbml is None:
raise Exception("libSBML required for fbc < 2")
+ # libsbml needs a file string, so write to temp file if a file handle
+ if hasattr(filename, "read"):
+ with NamedTemporaryFile(suffix=".xml", delete=False) as outfile:
+ xmlfile.write(outfile, encoding="UTF-8")
+ filename = outfile.name
return read_sbml2(filename, **kwargs)
- return parse_xml_into_model(xml, number=number)
+ return parse_xml_into_model(xml, number=number, **kwargs)
+
+
+id_required = {ns(i) for i in ("sbml:model", "sbml:reaction:", "sbml:species",
+ "fbc:geneProduct", "sbml:compartment",
+ "sbml:paramter", "sbml:UnitDefinition",
+ "fbc:objective")}
+invalid_id_detector = re.compile("|".join(re.escape(i[0]) for i in _renames))
+
+
+def validate_sbml_model(filename):
+ """returns the model along with a list of errors"""
+ xmlfile = parse_stream(filename)
+ xml = xmlfile.getroot()
+ # use libsbml if not l3v1 with fbc v2
+ if xml.get("level") != "3" or xml.get("version") != "1" or \
+ get_attrib(xml, "fbc:required") is None:
+ raise CobraSBMLError("XML is not SBML level 3 v1 with fbc v2")
+
+ sbml_errors = []
+
+ def err(err_msg):
+ sbml_errors.append(err_msg)
+
+ # make sure all sbml id's are valid
+ all_ids = set()
+ for element in xmlfile.iter():
+ if element.tag.startswith(fbc_prefix):
+ prefix = fbc_prefix
+ elif element.tag.startswith(sbml_prefix):
+ prefix = ""
+ else:
+ continue
+ str_id = element.get(prefix + "id", None)
+ element_name = element.tag.split("}")[-1]
+ id_repr = "%s id '%s' " % (element_name, str_id)
+ if str_id is None or len(str_id) == 0:
+ if element.tag in id_required:
+ err(element_name + " missing id")
+ else:
+ if str_id in all_ids:
+ err("duplicate id for " + id_repr)
+ all_ids.add(str_id)
+ try:
+ str_id.encode("ascii")
+ except UnicodeEncodeError as e:
+ err("invalid character '%s' found in %s" %
+ (str_id[e.start:e.end], id_repr))
+ if invalid_id_detector.search(str_id):
+ bad_chars = "".join(invalid_id_detector.findall(str_id))
+ err("invalid character%s %s found in %s" %
+ ("s" if len(bad_chars) > 1 else "", bad_chars, id_repr))
+ if not str_id[0].isalpha():
+ err("%s does not start with alphabet character" % id_repr)
+
+ # check SBO terms
+ for element in xml.findall(".//*[@sboTerm]"):
+ sbo_term = element.get("sboTerm")
+ if not sbo_term.startswith("SBO:"):
+ warn("sboTerm '%s' does not begin with 'SBO:'" % sbo_term)
+
+ # ensure can be made into model
+ with catch_warnings(record=True) as warning_list:
+ simplefilter("always")
+ model = parse_xml_into_model(xml)
+ sbml_errors.extend(i.message.message for i in warning_list)
+
+ # ensure exactly one objective
+ if len(model.objective) == 0:
+ sbml_errors.append("no objective reaction identified")
+ elif len(model.objective) > 1:
+ sbml_errors.append("only one reaction should be the objective")
+
+ # make sure there are no infinite bounds
+ if any(isinf(i) or isnan(i)
+ for i in model.reactions.list_attr("lower_bound")):
+ sbml_errors.append("infinite or NaN value detected in lower bounds")
+ if any(isinf(i) or isnan(i)
+ for i in model.reactions.list_attr("upper_bound")):
+ sbml_errors.append("infinite or NaN value detected in upper bounds")
+ for reaction in model.reactions:
+ if reaction.lower_bound > reaction.upper_bound:
+ sbml_errors.append("reaction '%s' has lower bound > upper bound" %
+ reaction.id)
+
+ return model, sbml_errors
def write_sbml_model(cobra_model, filename, use_fbc_package=True, **kwargs):
if not use_fbc_package:
+ if libsbml is None:
+ raise Exception("libSBML required to write non-fbc models")
write_sbml2(cobra_model, filename, use_fbc_package=False, **kwargs)
return
+ # create xml
xml = model_to_xml(cobra_model, **kwargs)
- indent_xml(xml)
- ElementTree(xml).write(filename, encoding="UTF-8")
+ write_args = {"encoding": "UTF-8"}
+ if _with_lxml:
+ write_args["pretty_print"] = True
+ else:
+ indent_xml(xml)
+ # write xml to file
+ should_close = True
+ if hasattr(filename, "write"):
+ xmlfile = filename
+ should_close = False
+ elif filename.endswith(".gz"):
+ xmlfile = GzipFile(filename, "wb")
+ elif filename.endswith(".bz2"):
+ xmlfile = BZ2File(filename, "wb")
+ else:
+ xmlfile = open(filename, "wb")
+ ElementTree(xml).write(xmlfile, **write_args)
+ if should_close:
+ xmlfile.close()
# inspired by http://effbot.org/zone/element-lib.htm#prettyprint
diff --git a/cobra/manipulation/modify.py b/cobra/manipulation/modify.py
index 18443ab..d24bf6d 100644
--- a/cobra/manipulation/modify.py
+++ b/cobra/manipulation/modify.py
@@ -8,31 +8,24 @@ from six import iteritems
from .. import Reaction
from .delete import get_compiled_gene_reaction_rules
from ..core.Gene import ast2str
+from ..io.sbml3 import _renames
-_renames = (
- (".", "_DOT_"),
- ("(", "_LPAREN_"),
- (")", "_RPAREN_"),
- ("-", "__"),
- ("[", "_LSQBKT"),
- ("]", "_RSQBKT"),
- (",", "_COMMA_"),
- (":", "_COLON_"),
- (">", "_GT_"),
- ("<", "_LT"),
- ("/", "_FLASH"),
- ("\\", "_BSLASH"),
- ("+", "_PLUS_"),
- ("=", "_EQ_"),
- (" ", "_SPACE_"),
-)
+
+def _escape_str_id(id_str):
+ """make a single string id SBML compliant"""
+ for c in ("'", '"'):
+ if id_str.startswith(c) and id_str.endswith(c) \
+ and id_str.count(c) == 2:
+ id_str = id_str.strip(c)
+ for char, escaped_char in _renames:
+ id_str = id_str.replace(char, escaped_char)
+ return id_str
class _GeneRenamer(NodeTransformer):
def visit_Name(self, node):
- for char, escaped_char in _renames:
- node.id = node.id.replace(char, escaped_char)
+ node.id = _escape_str_id(node.id)
return node
@@ -42,8 +35,7 @@ def escape_ID(cobra_model):
cobra_model.metabolites,
cobra_model.reactions,
cobra_model.genes):
- for char, escaped_char in _renames:
- x.id = x.id.replace(char, escaped_char)
+ x.id = _escape_str_id(x.id)
cobra_model.repair()
gene_renamer = _GeneRenamer()
for rxn, rule in iteritems(get_compiled_gene_reaction_rules(cobra_model)):
@@ -174,8 +166,8 @@ def convert_to_irreversible(cobra_model):
reaction.objective_coefficient * -1
reaction.lower_bound = 0
# Make the directions aware of each other
- reaction.reflection = reverse_reaction
- reverse_reaction.reflection = reaction
+ reaction.notes["reflection"] = reverse_reaction.id
+ reverse_reaction.notes["reflection"] = reaction.id
reaction_dict = dict([(k, v*-1)
for k, v in reaction._metabolites.items()])
reverse_reaction.add_metabolites(reaction_dict)
@@ -196,31 +188,38 @@ def revert_to_reversible(cobra_model, update_solution=True):
"""
reverse_reactions = [x for x in cobra_model.reactions
- if x.reflection is not None and
+ if "reflection" in x.notes and
x.id.endswith('_reverse')]
# If there are no reverse reactions, then there is nothing to do
if len(reverse_reactions) == 0:
return
+ update_solution = update_solution and cobra_model.solution is not None \
+ and cobra_model.solution.status != "NA"
+
+ if update_solution:
+ x_dict = cobra_model.solution.x_dict
+
for reverse in reverse_reactions:
- forward = reverse.reflection
+ forward_id = reverse.notes.pop("reflection")
+ forward = cobra_model.reactions.get_by_id(forward_id)
forward.lower_bound = -reverse.upper_bound
- forward.reflection = None
+
+ # update the solution dict
+ if update_solution:
+ if reverse.id in x_dict:
+ x_dict[forward_id] -= x_dict.pop(reverse.id)
+
+ if "reflection" in forward.notes:
+ forward.notes.pop("reflection")
+
# Since the metabolites and genes are all still in
# use we can do this faster removal step. We can
# probably speed things up here.
cobra_model.remove_reactions(reverse_reactions)
- # fix the solution
- if update_solution and cobra_model.solution is not None and \
- cobra_model.solution.status != "NA":
- x_dict = cobra_model.solution.x_dict
- # Check if the model was optimized while it was still reversible. If so
- # then the solution does not need to be fixed.
- if reverse_reactions[0].id not in x_dict:
- return
- # Update x and x_dict to correct for reverse flux.
- for reverse in reverse_reactions:
- forward = reverse.reflection
- x_dict[forward.id] -= x_dict.pop(reverse.id)
+
+ # update the solution vector
+ if update_solution:
+ cobra_model.solution.x_dict = x_dict
cobra_model.solution.x = [x_dict[r.id] for r in cobra_model.reactions]
diff --git a/cobra/test/__init__.py b/cobra/test/__init__.py
index 87bca3c..7a20929 100644
--- a/cobra/test/__init__.py
+++ b/cobra/test/__init__.py
@@ -21,7 +21,7 @@ salmonella_sbml = join(data_directory, "salmonella.xml")
salmonella_pickle = join(data_directory, "salmonella.pickle")
ecoli_sbml = join(data_directory, "iJO1366.xml")
-textbook_sbml = join(data_directory, "textbook.xml")
+textbook_sbml = join(data_directory, "textbook.xml.gz")
mini_sbml = join(data_directory, "mini_fbc2.xml")
del abspath, join, dirname
diff --git a/cobra/test/data/mini.json b/cobra/test/data/mini.json
index 265095b..3e1d20b 100644
--- a/cobra/test/data/mini.json
+++ b/cobra/test/data/mini.json
@@ -1 +1,1344 @@
-{"reactions": [{"subsystem": "Oxidative Phosphorylation", "name": "ATP maintenance requirement", "upper_bound": 999999.0, "lower_bound": 8.39, "notes": {}, "metabolites": {"h2o_c": -1.0, "pi_c": 1.0, "h_c": 1.0, "atp_c": -1.0, "adp_c": 1.0}, "objective_coefficient": 1, "variable_kind": "continuous", "id": "ATPM", "gene_reaction_rule": ""}, {"subsystem": "Glycolysis/Gluconeogenesis", "name": "enolase", "upper_bound": 999999.0, "lower_bound": -999999.0, "notes": {}, "metabolites": {"pep_c" [...]
\ No newline at end of file
+{
+ "compartments": {
+ "c": "cytosol",
+ "e": "extracellular"
+ },
+ "description": "mini_textbook",
+ "genes": [
+ {
+ "id": "b0755",
+ "name": "gpmA"
+ },
+ {
+ "id": "b0875",
+ "name": "aqpZ"
+ },
+ {
+ "id": "b1101",
+ "name": "ptsG"
+ },
+ {
+ "id": "b1380",
+ "name": "ldhA"
+ },
+ {
+ "id": "b1621",
+ "name": "malX"
+ },
+ {
+ "annotation": {
+ "ncbigi": [
+ "GI:1208453",
+ "GI:1652654"
+ ]
+ },
+ "id": "b1676",
+ "name": "pykF"
+ },
+ {
+ "id": "b1723",
+ "name": "pfkB"
+ },
+ {
+ "id": "b1773",
+ "name": "ydjI"
+ },
+ {
+ "id": "b1779",
+ "name": "gapA"
+ },
+ {
+ "id": "b1817",
+ "name": "manX"
+ },
+ {
+ "id": "b1818",
+ "name": "manY"
+ },
+ {
+ "id": "b1819",
+ "name": "manZ"
+ },
+ {
+ "id": "b1854",
+ "name": "pykA"
+ },
+ {
+ "id": "b2097",
+ "name": "fbaB"
+ },
+ {
+ "id": "b2133",
+ "name": "dld"
+ },
+ {
+ "id": "b2415",
+ "name": "ptsH"
+ },
+ {
+ "id": "b2416",
+ "name": "ptsI"
+ },
+ {
+ "id": "b2417",
+ "name": "crr"
+ },
+ {
+ "annotation": {
+ "ncbigi": "GI:1653839"
+ },
+ "id": "b2779",
+ "name": "eno"
+ },
+ {
+ "id": "b2925",
+ "name": "fbaA"
+ },
+ {
+ "annotation": {
+ "ncbigi": "GI:1653609"
+ },
+ "id": "b2926",
+ "name": "pgk"
+ },
+ {
+ "id": "b2975",
+ "name": "glcA"
+ },
+ {
+ "id": "b2987",
+ "name": "pitB"
+ },
+ {
+ "id": "b3493",
+ "name": "pitA"
+ },
+ {
+ "id": "b3603",
+ "name": "lldP"
+ },
+ {
+ "id": "b3612",
+ "name": "gpmM"
+ },
+ {
+ "annotation": {
+ "ncbigi": [
+ "GI:1006614",
+ "GI:1651919"
+ ]
+ },
+ "id": "b3916",
+ "name": "pfkA"
+ },
+ {
+ "id": "b3919",
+ "name": "tpiA"
+ },
+ {
+ "annotation": {
+ "ncbigi": "GI:1653253"
+ },
+ "id": "b4025",
+ "name": "pgi"
+ },
+ {
+ "id": "b4395",
+ "name": "ytjC"
+ },
+ {
+ "id": "s0001",
+ "name": "G_s0001"
+ }
+ ],
+ "id": "mini_textbook",
+ "metabolites": [
+ {
+ "annotation": {
+ "bigg.metabolite": "13dpg",
+ "biocyc": "DPG",
+ "chebi": [
+ "CHEBI:16001",
+ "CHEBI:1658",
+ "CHEBI:20189",
+ "CHEBI:57604",
+ "CHEBI:11881"
+ ],
+ "hmdb": "HMDB01270",
+ "kegg.compound": "C00236",
+ "pubchem.substance": "3535",
+ "reactome": "REACT_29800",
+ "seed.compound": "cpd00203",
+ "unipathway.compound": "UPC00236"
+ },
+ "compartment": "c",
+ "formula": "C3H4O10P2",
+ "id": "13dpg_c",
+ "name": "3-Phospho-D-glyceroyl phosphate"
+ },
+ {
+ "annotation": {
+ "bigg.metabolite": "2pg",
+ "biocyc": "2-PG",
+ "chebi": [
+ "CHEBI:1267",
+ "CHEBI:58289",
+ "CHEBI:17835",
+ "CHEBI:21028",
+ "CHEBI:11651",
+ "CHEBI:12986",
+ "CHEBI:24344",
+ "CHEBI:39868"
+ ],
+ "hmdb": [
+ "HMDB03391",
+ "HMDB00362"
+ ],
+ "kegg.compound": "C00631",
+ "pubchem.substance": "3904",
+ "reactome": "REACT_30485",
+ "seed.compound": "cpd00482",
+ "unipathway.compound": "UPC00631"
+ },
+ "compartment": "c",
+ "formula": "C3H4O7P",
+ "id": "2pg_c",
+ "name": "D-Glycerate 2-phosphate"
+ },
+ {
+ "annotation": {
+ "bigg.metabolite": "3pg",
+ "biocyc": "G3P",
+ "chebi": [
+ "CHEBI:40016",
+ "CHEBI:58272",
+ "CHEBI:57998",
+ "CHEBI:11879",
+ "CHEBI:1657",
+ "CHEBI:1659",
+ "CHEBI:17050",
+ "CHEBI:21029",
+ "CHEBI:11882",
+ "CHEBI:11880",
+ "CHEBI:12987",
+ "CHEBI:17794",
+ "CHEBI:24345"
+ ],
+ "hmdb": "HMDB00807",
+ "kegg.compound": [
+ "C00197",
+ "C00597"
+ ],
+ "pubchem.substance": "3497",
+ "reactome": "REACT_29728",
+ "seed.compound": "cpd00169",
+ "unipathway.compound": [
+ "UPC00597",
+ "UPC00197"
+ ]
+ },
+ "compartment": "c",
+ "formula": "C3H4O7P",
+ "id": "3pg_c",
+ "name": "3-Phospho-D-glycerate"
+ },
+ {
+ "annotation": {
+ "bigg.metabolite": "adp",
+ "biocyc": [
+ "ADP",
+ "ADP-GROUP"
+ ],
+ "cas": [
+ "58-64-0",
+ "58-64-0"
+ ],
+ "chebi": [
+ "CHEBI:13222",
+ "CHEBI:16761",
+ "CHEBI:2342",
+ "CHEBI:22244",
+ "CHEBI:40553",
+ "CHEBI:456216"
+ ],
+ "hmdb": "HMDB01341",
+ "kegg.compound": "C00008",
+ "kegg.glycan": "G11113",
+ "pubchem.substance": "3310",
+ "reactome": [
+ "REACT_190072",
+ "REACT_481002",
+ "REACT_211606",
+ "REACT_429160",
+ "REACT_29370",
+ "REACT_196180",
+ "REACT_113581",
+ "REACT_113582",
+ "REACT_114564",
+ "REACT_114565",
+ "REACT_429153"
+ ],
+ "seed.compound": "cpd00008",
+ "unipathway.compound": "UPC00008"
+ },
+ "compartment": "c",
+ "formula": "C10H12N5O10P2",
+ "id": "adp_c",
+ "name": "ADP"
+ },
+ {
+ "annotation": {
+ "bigg.metabolite": "atp",
+ "biocyc": "ATP",
+ "cas": [
+ "56-65-5",
+ "56-65-5"
+ ],
+ "chebi": [
+ "CHEBI:40938",
+ "CHEBI:15422",
+ "CHEBI:57299",
+ "CHEBI:13236",
+ "CHEBI:10789",
+ "CHEBI:30616",
+ "CHEBI:22249",
+ "CHEBI:10841",
+ "CHEBI:2359"
+ ],
+ "hmdb": "HMDB00538",
+ "kegg.compound": "C00002",
+ "kegg.drug": "D08646",
+ "pubchem.substance": "3304",
+ "reactome": [
+ "REACT_190078",
+ "REACT_113592",
+ "REACT_113593",
+ "REACT_114570",
+ "REACT_29358",
+ "REACT_389573",
+ "REACT_139836",
+ "REACT_211579"
+ ],
+ "seed.compound": "cpd00002",
+ "unipathway.compound": "UPC00002"
+ },
+ "compartment": "c",
+ "formula": "C10H12N5O13P3",
+ "id": "atp_c",
+ "name": "ATP"
+ },
+ {
+ "annotation": {
+ "bigg.metabolite": "dhap",
+ "biocyc": "DIHYDROXY-ACETONE-PHOSPHATE",
+ "cas": [
+ "57-04-5",
+ "57-04-5"
+ ],
+ "chebi": [
+ "CHEBI:14341",
+ "CHEBI:57642",
+ "CHEBI:14342",
+ "CHEBI:16108",
+ "CHEBI:5454",
+ "CHEBI:24355",
+ "CHEBI:39571"
+ ],
+ "hmdb": [
+ "HMDB01473",
+ "HMDB11735"
+ ],
+ "kegg.compound": "C00111",
+ "pubchem.substance": "3411",
+ "reactome": [
+ "REACT_188451",
+ "REACT_75970",
+ "REACT_390404"
+ ],
+ "seed.compound": "cpd00095",
+ "unipathway.compound": "UPC00111"
+ },
+ "compartment": "c",
+ "formula": "C3H5O6P",
+ "id": "dhap_c",
+ "name": "Dihydroxyacetone phosphate"
+ },
+ {
+ "annotation": {
+ "bigg.metabolite": "f6p",
+ "biocyc": "FRUCTOSE-6P",
+ "cas": [
+ "643-13-0",
+ "643-13-0"
+ ],
+ "chebi": [
+ "CHEBI:57634",
+ "CHEBI:12352",
+ "CHEBI:45804",
+ "CHEBI:61527",
+ "CHEBI:61553",
+ "CHEBI:10375",
+ "CHEBI:16084",
+ "CHEBI:42378",
+ "CHEBI:22768"
+ ],
+ "hmdb": "HMDB03971",
+ "kegg.compound": [
+ "C05345",
+ "C00085"
+ ],
+ "pubchem.substance": "3385",
+ "seed.compound": "cpd00072",
+ "unipathway.compound": [
+ "UPC05345",
+ "UPC00085"
+ ]
+ },
+ "compartment": "c",
+ "formula": "C6H11O9P",
+ "id": "f6p_c",
+ "name": "D-Fructose 6-phosphate"
+ },
+ {
+ "annotation": {
+ "bigg.metabolite": "fdp",
+ "biocyc": "FRUCTOSE-16-DIPHOSPHATE",
+ "cas": [
+ "488-69-7",
+ "488-69-7"
+ ],
+ "chebi": [
+ "CHEBI:32968",
+ "CHEBI:49299",
+ "CHEBI:42553",
+ "CHEBI:32966",
+ "CHEBI:37736",
+ "CHEBI:28013",
+ "CHEBI:32967",
+ "CHEBI:41014",
+ "CHEBI:22767",
+ "CHEBI:10374",
+ "CHEBI:40595",
+ "CHEBI:40591"
+ ],
+ "kegg.compound": [
+ "C05378",
+ "C00354"
+ ],
+ "pubchem.substance": "3647",
+ "seed.compound": "cpd00290",
+ "unipathway.compound": "UPC00354"
+ },
+ "compartment": "c",
+ "formula": "C6H10O12P2",
+ "id": "fdp_c",
+ "name": "D-Fructose 1,6-bisphosphate"
+ },
+ {
+ "annotation": {
+ "bigg.metabolite": "g3p",
+ "cas": [
+ "142-10-9",
+ "142-10-9"
+ ],
+ "chebi": [
+ "CHEBI:17138",
+ "CHEBI:14333",
+ "CHEBI:5446",
+ "CHEBI:58027"
+ ],
+ "hmdb": "HMDB01112",
+ "kegg.compound": [
+ "C00661",
+ "C00118"
+ ],
+ "pubchem.substance": "3930",
+ "seed.compound": "cpd00102",
+ "unipathway.compound": [
+ "UPC00661",
+ "UPC00118"
+ ]
+ },
+ "compartment": "c",
+ "formula": "C3H5O6P",
+ "id": "g3p_c",
+ "name": "Glyceraldehyde 3-phosphate"
+ },
+ {
+ "annotation": {
+ "bigg.metabolite": "g6p",
+ "biocyc": [
+ "D-glucose-6-phosphate",
+ "GLC-6-P"
+ ],
+ "cas": [
+ "56-73-5",
+ "56-73-5"
+ ],
+ "chebi": [
+ "CHEBI:10399",
+ "CHEBI:22797",
+ "CHEBI:41041",
+ "CHEBI:17719",
+ "CHEBI:4170",
+ "CHEBI:61548",
+ "CHEBI:58247",
+ "CHEBI:12375"
+ ],
+ "hmdb": [
+ "HMDB03498",
+ "HMDB06793",
+ "HMDB01401",
+ "HMDB01549"
+ ],
+ "kegg.compound": [
+ "C00092",
+ "C01172"
+ ],
+ "pubchem.substance": "3392",
+ "reactome": "REACT_1629756",
+ "seed.compound": "cpd00079",
+ "unipathway.compound": "UPC00092"
+ },
+ "compartment": "c",
+ "formula": "C6H11O9P",
+ "id": "g6p_c",
+ "name": "D-Glucose 6-phosphate"
+ },
+ {
+ "annotation": {
+ "bigg.metabolite": "glc__D",
+ "cas": [
+ "50-99-7",
+ "50-99-7"
+ ],
+ "kegg.compound": "C00031",
+ "pubchem.substance": "3333"
+ },
+ "compartment": "e",
+ "formula": "C6H12O6",
+ "id": "glc__D_e",
+ "name": "D-Glucose"
+ },
+ {
+ "annotation": {
+ "bigg.metabolite": "h2o",
+ "biocyc": [
+ "WATER",
+ "OH",
+ "OXONIUM"
+ ],
+ "cas": [
+ "7732-18-5",
+ "7732-18-5"
+ ],
+ "chebi": [
+ "CHEBI:15377",
+ "CHEBI:13365",
+ "CHEBI:41979",
+ "CHEBI:16234",
+ "CHEBI:36385",
+ "CHEBI:42857",
+ "CHEBI:27313",
+ "CHEBI:44819",
+ "CHEBI:29373",
+ "CHEBI:10743",
+ "CHEBI:5594",
+ "CHEBI:29356",
+ "CHEBI:53442",
+ "CHEBI:29375",
+ "CHEBI:29374",
+ "CHEBI:13419",
+ "CHEBI:43228",
+ "CHEBI:44292",
+ "CHEBI:13352",
+ "CHEBI:41981",
+ "CHEBI:29412",
+ "CHEBI:42043",
+ "CHEBI:33811",
+ "CHEBI:33813",
+ "CHEBI:35511",
+ "CHEBI:5585",
+ "CHEBI:44641",
+ "CHEBI:44701"
+ ],
+ "hmdb": [
+ "HMDB01039",
+ "HMDB02111"
+ ],
+ "kegg.compound": [
+ "C01328",
+ "C00001",
+ "C18714",
+ "C18712"
+ ],
+ "kegg.drug": [
+ "D00001",
+ "D06322",
+ "D03703"
+ ],
+ "pubchem.substance": "3303",
+ "reactome": [
+ "REACT_947593",
+ "REACT_189422",
+ "REACT_141343",
+ "REACT_113518",
+ "REACT_1605715",
+ "REACT_109276",
+ "REACT_113521",
+ "REACT_113519",
+ "REACT_2022884",
+ "REACT_351603",
+ "REACT_29356"
+ ],
+ "seed.compound": [
+ "cpd15275",
+ "cpd00001"
+ ],
+ "unipathway.compound": [
+ "UPC00001",
+ "UPC01328"
+ ]
+ },
+ "compartment": "c",
+ "formula": "H2O",
+ "id": "h2o_c",
+ "name": "H2O"
+ },
+ {
+ "annotation": {
+ "bigg.metabolite": "h2o",
+ "biocyc": [
+ "WATER",
+ "OH",
+ "OXONIUM"
+ ],
+ "cas": [
+ "7732-18-5",
+ "7732-18-5"
+ ],
+ "chebi": [
+ "CHEBI:15377",
+ "CHEBI:13365",
+ "CHEBI:41979",
+ "CHEBI:16234",
+ "CHEBI:36385",
+ "CHEBI:42857",
+ "CHEBI:27313",
+ "CHEBI:44819",
+ "CHEBI:29373",
+ "CHEBI:10743",
+ "CHEBI:5594",
+ "CHEBI:29356",
+ "CHEBI:53442",
+ "CHEBI:29375",
+ "CHEBI:29374",
+ "CHEBI:13419",
+ "CHEBI:43228",
+ "CHEBI:44292",
+ "CHEBI:13352",
+ "CHEBI:41981",
+ "CHEBI:29412",
+ "CHEBI:42043",
+ "CHEBI:33811",
+ "CHEBI:33813",
+ "CHEBI:35511",
+ "CHEBI:5585",
+ "CHEBI:44641",
+ "CHEBI:44701"
+ ],
+ "hmdb": [
+ "HMDB01039",
+ "HMDB02111"
+ ],
+ "kegg.compound": [
+ "C01328",
+ "C00001",
+ "C18714",
+ "C18712"
+ ],
+ "kegg.drug": [
+ "D00001",
+ "D06322",
+ "D03703"
+ ],
+ "pubchem.substance": "3303",
+ "reactome": [
+ "REACT_947593",
+ "REACT_189422",
+ "REACT_141343",
+ "REACT_113518",
+ "REACT_1605715",
+ "REACT_109276",
+ "REACT_113521",
+ "REACT_113519",
+ "REACT_2022884",
+ "REACT_351603",
+ "REACT_29356"
+ ],
+ "seed.compound": [
+ "cpd15275",
+ "cpd00001"
+ ],
+ "unipathway.compound": [
+ "UPC00001",
+ "UPC01328"
+ ]
+ },
+ "compartment": "e",
+ "formula": "H2O",
+ "id": "h2o_e",
+ "name": "H2O"
+ },
+ {
+ "annotation": {
+ "bigg.metabolite": "h",
+ "biocyc": "PROTON",
+ "cas": [
+ "12408-02-5",
+ "12408-02-5"
+ ],
+ "chebi": [
+ "CHEBI:24636",
+ "CHEBI:15378",
+ "CHEBI:10744",
+ "CHEBI:13357",
+ "CHEBI:5584"
+ ],
+ "kegg.compound": "C00080",
+ "pubchem.substance": "3380",
+ "reactome": [
+ "REACT_194688",
+ "REACT_425978",
+ "REACT_193465",
+ "REACT_374900",
+ "REACT_74722",
+ "REACT_425999",
+ "REACT_428040",
+ "REACT_163953",
+ "REACT_372511",
+ "REACT_2000349",
+ "REACT_70106",
+ "REACT_1470067",
+ "REACT_113529",
+ "REACT_425969",
+ "REACT_428548",
+ "REACT_156540",
+ "REACT_1614597",
+ "REACT_351626",
+ "REACT_427899"
+ ],
+ "seed.compound": "cpd00067",
+ "unipathway.compound": "UPC00080"
+ },
+ "compartment": "c",
+ "formula": "H",
+ "id": "h_c",
+ "name": "H+"
+ },
+ {
+ "annotation": {
+ "bigg.metabolite": "h",
+ "biocyc": "PROTON",
+ "cas": [
+ "12408-02-5",
+ "12408-02-5"
+ ],
+ "chebi": [
+ "CHEBI:24636",
+ "CHEBI:15378",
+ "CHEBI:10744",
+ "CHEBI:13357",
+ "CHEBI:5584"
+ ],
+ "kegg.compound": "C00080",
+ "pubchem.substance": "3380",
+ "reactome": [
+ "REACT_194688",
+ "REACT_425978",
+ "REACT_193465",
+ "REACT_374900",
+ "REACT_74722",
+ "REACT_425999",
+ "REACT_428040",
+ "REACT_163953",
+ "REACT_372511",
+ "REACT_2000349",
+ "REACT_70106",
+ "REACT_1470067",
+ "REACT_113529",
+ "REACT_425969",
+ "REACT_428548",
+ "REACT_156540",
+ "REACT_1614597",
+ "REACT_351626",
+ "REACT_427899"
+ ],
+ "seed.compound": "cpd00067",
+ "unipathway.compound": "UPC00080"
+ },
+ "compartment": "e",
+ "formula": "H",
+ "id": "h_e",
+ "name": "H+"
+ },
+ {
+ "charge": -1,
+ "compartment": "c",
+ "formula": "C3H5O3",
+ "id": "lac__D_c",
+ "name": "D-Lactate"
+ },
+ {
+ "charge": -1,
+ "compartment": "e",
+ "formula": "C3H5O3",
+ "id": "lac__D_e",
+ "name": "D-Lactate"
+ },
+ {
+ "annotation": {
+ "bigg.metabolite": "nad",
+ "biocyc": "NAD",
+ "cas": [
+ "53-84-9",
+ "53-84-9"
+ ],
+ "chebi": [
+ "CHEBI:21901",
+ "CHEBI:7422",
+ "CHEBI:44214",
+ "CHEBI:15846",
+ "CHEBI:13394",
+ "CHEBI:13393",
+ "CHEBI:44215",
+ "CHEBI:13389",
+ "CHEBI:57540",
+ "CHEBI:44281"
+ ],
+ "hmdb": "HMDB00902",
+ "kegg.compound": "C00003",
+ "kegg.drug": "D00002",
+ "pubchem.substance": "3305",
+ "reactome": [
+ "REACT_192307",
+ "REACT_29360",
+ "REACT_427523",
+ "REACT_194653",
+ "REACT_113526"
+ ],
+ "seed.compound": "cpd00003",
+ "unipathway.compound": "UPC00003"
+ },
+ "compartment": "c",
+ "formula": "C21H26N7O14P2",
+ "id": "nad_c",
+ "name": "Nicotinamide adenine dinucleotide"
+ },
+ {
+ "annotation": {
+ "bigg.metabolite": "nadh",
+ "biocyc": "NADH",
+ "cas": [
+ "58-68-4",
+ "58-68-4"
+ ],
+ "chebi": [
+ "CHEBI:13395",
+ "CHEBI:21902",
+ "CHEBI:16908",
+ "CHEBI:7423",
+ "CHEBI:44216",
+ "CHEBI:57945",
+ "CHEBI:13396"
+ ],
+ "hmdb": "HMDB01487",
+ "kegg.compound": "C00004",
+ "pubchem.substance": "3306",
+ "reactome": [
+ "REACT_192305",
+ "REACT_73473",
+ "REACT_194697",
+ "REACT_29362"
+ ],
+ "seed.compound": "cpd00004",
+ "unipathway.compound": "UPC00004"
+ },
+ "compartment": "c",
+ "formula": "C21H27N7O14P2",
+ "id": "nadh_c",
+ "name": "Nicotinamide adenine dinucleotide - reduced"
+ },
+ {
+ "annotation": {
+ "bigg.metabolite": "pep",
+ "biocyc": "PHOSPHO-ENOL-PYRUVATE",
+ "cas": [
+ "138-08-9",
+ "138-08-9"
+ ],
+ "chebi": [
+ "CHEBI:44897",
+ "CHEBI:44894",
+ "CHEBI:14812",
+ "CHEBI:8147",
+ "CHEBI:26055",
+ "CHEBI:26054",
+ "CHEBI:58702",
+ "CHEBI:18021"
+ ],
+ "hmdb": "HMDB00263",
+ "kegg.compound": "C00074",
+ "pubchem.substance": "3374",
+ "reactome": [
+ "REACT_29492",
+ "REACT_372364"
+ ],
+ "seed.compound": "cpd00061",
+ "unipathway.compound": "UPC00074"
+ },
+ "compartment": "c",
+ "formula": "C3H2O6P",
+ "id": "pep_c",
+ "name": "Phosphoenolpyruvate"
+ },
+ {
+ "annotation": {
+ "bigg.metabolite": "pi",
+ "biocyc": [
+ "Pi",
+ "PHOSPHATE-GROUP",
+ "CPD0-1421"
+ ],
+ "cas": [
+ "14265-44-2",
+ "14265-44-2"
+ ],
+ "chebi": [
+ "CHEBI:37583",
+ "CHEBI:7793",
+ "CHEBI:37585",
+ "CHEBI:34683",
+ "CHEBI:14791",
+ "CHEBI:34855",
+ "CHEBI:29137",
+ "CHEBI:29139",
+ "CHEBI:63036",
+ "CHEBI:26020",
+ "CHEBI:39739",
+ "CHEBI:32597",
+ "CHEBI:32596",
+ "CHEBI:43474",
+ "CHEBI:63051",
+ "CHEBI:43470",
+ "CHEBI:9679",
+ "CHEBI:35433",
+ "CHEBI:4496",
+ "CHEBI:45024",
+ "CHEBI:18367",
+ "CHEBI:26078",
+ "CHEBI:39745",
+ "CHEBI:24838"
+ ],
+ "hmdb": "HMDB02142",
+ "kegg.compound": [
+ "C13556",
+ "C13558",
+ "C00009"
+ ],
+ "kegg.drug": "D05467",
+ "pubchem.substance": "3311",
+ "reactome": [
+ "REACT_947590",
+ "REACT_109277",
+ "REACT_113548",
+ "REACT_2255331",
+ "REACT_29372",
+ "REACT_113550",
+ "REACT_113551"
+ ],
+ "seed.compound": [
+ "cpd09464",
+ "cpd09463",
+ "cpd00009"
+ ],
+ "unipathway.compound": "UPC00009"
+ },
+ "compartment": "c",
+ "formula": "HO4P",
+ "id": "pi_c",
+ "name": "Phosphate"
+ },
+ {
+ "annotation": {
+ "bigg.metabolite": "pi",
+ "biocyc": [
+ "Pi",
+ "PHOSPHATE-GROUP",
+ "CPD0-1421"
+ ],
+ "cas": [
+ "14265-44-2",
+ "14265-44-2"
+ ],
+ "chebi": [
+ "CHEBI:37583",
+ "CHEBI:7793",
+ "CHEBI:37585",
+ "CHEBI:34683",
+ "CHEBI:14791",
+ "CHEBI:34855",
+ "CHEBI:29137",
+ "CHEBI:29139",
+ "CHEBI:63036",
+ "CHEBI:26020",
+ "CHEBI:39739",
+ "CHEBI:32597",
+ "CHEBI:32596",
+ "CHEBI:43474",
+ "CHEBI:63051",
+ "CHEBI:43470",
+ "CHEBI:9679",
+ "CHEBI:35433",
+ "CHEBI:4496",
+ "CHEBI:45024",
+ "CHEBI:18367",
+ "CHEBI:26078",
+ "CHEBI:39745",
+ "CHEBI:24838"
+ ],
+ "hmdb": "HMDB02142",
+ "kegg.compound": [
+ "C13556",
+ "C13558",
+ "C00009"
+ ],
+ "kegg.drug": "D05467",
+ "pubchem.substance": "3311",
+ "reactome": [
+ "REACT_947590",
+ "REACT_109277",
+ "REACT_113548",
+ "REACT_2255331",
+ "REACT_29372",
+ "REACT_113550",
+ "REACT_113551"
+ ],
+ "seed.compound": [
+ "cpd09464",
+ "cpd09463",
+ "cpd00009"
+ ],
+ "unipathway.compound": "UPC00009"
+ },
+ "compartment": "e",
+ "formula": "HO4P",
+ "id": "pi_e",
+ "name": "Phosphate"
+ },
+ {
+ "annotation": {
+ "bigg.metabolite": "pyr",
+ "biocyc": "PYRUVATE",
+ "cas": [
+ "127-17-3",
+ "127-17-3"
+ ],
+ "chebi": [
+ "CHEBI:15361",
+ "CHEBI:14987",
+ "CHEBI:8685",
+ "CHEBI:32816",
+ "CHEBI:45253",
+ "CHEBI:26466",
+ "CHEBI:26462"
+ ],
+ "hmdb": "HMDB00243",
+ "kegg.compound": "C00022",
+ "lipidmaps": "LMFA01060077",
+ "pubchem.substance": "3324",
+ "reactome": [
+ "REACT_113557",
+ "REACT_389680",
+ "REACT_29398"
+ ],
+ "seed.compound": "cpd00020",
+ "unipathway.compound": "UPC00022"
+ },
+ "compartment": "c",
+ "formula": "C3H3O3",
+ "id": "pyr_c",
+ "name": "Pyruvate"
+ }
+ ],
+ "reactions": [
+ {
+ "annotation": {
+ "bigg.reaction": "ATPM"
+ },
+ "gene_reaction_rule": "",
+ "id": "ATPM",
+ "lower_bound": 8.39,
+ "metabolites": {
+ "adp_c": 1.0,
+ "atp_c": -1.0,
+ "h2o_c": -1.0,
+ "h_c": 1.0,
+ "pi_c": 1.0
+ },
+ "name": "ATP maintenance requirement",
+ "objective_coefficient": 1,
+ "upper_bound": 1000.0
+ },
+ {
+ "gene_reaction_rule": "b3603 or b2975",
+ "id": "D_LACt2",
+ "lower_bound": -1000.0,
+ "metabolites": {
+ "h_c": 1,
+ "h_e": -1,
+ "lac__D_c": 1,
+ "lac__D_e": -1
+ },
+ "name": "D_LACt2",
+ "upper_bound": 1000.0
+ },
+ {
+ "annotation": {
+ "bigg.reaction": "ENO"
+ },
+ "gene_reaction_rule": "b2779",
+ "id": "ENO",
+ "lower_bound": -1000.0,
+ "metabolites": {
+ "2pg_c": -1.0,
+ "h2o_c": 1.0,
+ "pep_c": 1.0
+ },
+ "name": "enolase",
+ "upper_bound": 1000.0
+ },
+ {
+ "annotation": {
+ "bigg.reaction": "glc"
+ },
+ "gene_reaction_rule": "",
+ "id": "EX_glc__D_e",
+ "lower_bound": -10.0,
+ "metabolites": {
+ "glc__D_e": -1.0
+ },
+ "name": "D-Glucose exchange",
+ "upper_bound": 1000.0
+ },
+ {
+ "annotation": {
+ "bigg.reaction": "h"
+ },
+ "gene_reaction_rule": "",
+ "id": "EX_h_e",
+ "lower_bound": -1000.0,
+ "metabolites": {
+ "h_e": -1.0
+ },
+ "name": "H+ exchange",
+ "upper_bound": 1000.0
+ },
+ {
+ "gene_reaction_rule": "",
+ "id": "EX_lac__D_e",
+ "lower_bound": 0.0,
+ "metabolites": {
+ "lac__D_e": -1.0
+ },
+ "name": "D-lactate exchange",
+ "upper_bound": 1000.0
+ },
+ {
+ "annotation": {
+ "bigg.reaction": "FBA"
+ },
+ "gene_reaction_rule": "b1773 or b2097 or b2925",
+ "id": "FBA",
+ "lower_bound": -1000.0,
+ "metabolites": {
+ "dhap_c": 1.0,
+ "fdp_c": -1.0,
+ "g3p_c": 1.0
+ },
+ "name": "fructose-bisphosphate aldolase",
+ "upper_bound": 1000.0
+ },
+ {
+ "annotation": {
+ "bigg.reaction": "GAPD"
+ },
+ "gene_reaction_rule": "b1779",
+ "id": "GAPD",
+ "lower_bound": -1000.0,
+ "metabolites": {
+ "13dpg_c": 1.0,
+ "g3p_c": -1.0,
+ "h_c": 1.0,
+ "nad_c": -1.0,
+ "nadh_c": 1.0,
+ "pi_c": -1.0
+ },
+ "name": "glyceraldehyde-3-phosphate dehydrogenase",
+ "upper_bound": 1000.0
+ },
+ {
+ "annotation": {
+ "bigg.reaction": "GLCpts"
+ },
+ "gene_reaction_rule": "( b2417 and b1621 and b2415 and b2416 ) or ( b2417 and b1101 and b2415 and b2416 ) or ( b1817 and b1818 and b1819 and b2415 and b2416 )",
+ "id": "GLCpts",
+ "lower_bound": 0.0,
+ "metabolites": {
+ "g6p_c": 1.0,
+ "glc__D_e": -1.0,
+ "pep_c": -1.0,
+ "pyr_c": 1.0
+ },
+ "name": "D-glucose transport via PEP:Pyr PTS",
+ "upper_bound": 1000.0
+ },
+ {
+ "annotation": {
+ "bigg.reaction": "H2Ot"
+ },
+ "gene_reaction_rule": "b0875 or s0001",
+ "id": "H2Ot",
+ "lower_bound": -1000.0,
+ "metabolites": {
+ "h2o_c": 1.0,
+ "h2o_e": -1.0
+ },
+ "name": "R H2O transport via - diffusion",
+ "upper_bound": 1000.0
+ },
+ {
+ "gene_reaction_rule": "b2133 or b1380",
+ "id": "LDH_D",
+ "lower_bound": -1000.0,
+ "metabolites": {
+ "h_c": 1.0,
+ "lac__D_c": -1.0,
+ "nad_c": -1.0,
+ "nadh_c": 1.0,
+ "pyr_c": 1.0
+ },
+ "name": "D-lactate dehydrogenase",
+ "upper_bound": 1000.0
+ },
+ {
+ "annotation": {
+ "bigg.reaction": "PFK"
+ },
+ "gene_reaction_rule": "b3916 or b1723",
+ "id": "PFK",
+ "lower_bound": 0.0,
+ "metabolites": {
+ "adp_c": 1.0,
+ "atp_c": -1.0,
+ "f6p_c": -1.0,
+ "fdp_c": 1.0,
+ "h_c": 1.0
+ },
+ "name": "phosphofructokinase",
+ "upper_bound": 1000.0
+ },
+ {
+ "annotation": {
+ "bigg.reaction": "PGI"
+ },
+ "gene_reaction_rule": "b4025",
+ "id": "PGI",
+ "lower_bound": -1000.0,
+ "metabolites": {
+ "f6p_c": 1.0,
+ "g6p_c": -1.0
+ },
+ "name": "glucose-6-phosphate isomerase",
+ "upper_bound": 1000.0
+ },
+ {
+ "annotation": {
+ "bigg.reaction": "PGK"
+ },
+ "gene_reaction_rule": "b2926",
+ "id": "PGK",
+ "lower_bound": -1000.0,
+ "metabolites": {
+ "13dpg_c": 1.0,
+ "3pg_c": -1.0,
+ "adp_c": 1.0,
+ "atp_c": -1.0
+ },
+ "name": "phosphoglycerate kinase",
+ "upper_bound": 1000.0
+ },
+ {
+ "annotation": {
+ "bigg.reaction": "PGM"
+ },
+ "gene_reaction_rule": "b4395 or b3612 or b0755",
+ "id": "PGM",
+ "lower_bound": -1000.0,
+ "metabolites": {
+ "2pg_c": -1.0,
+ "3pg_c": 1.0
+ },
+ "name": "phosphoglycerate mutase",
+ "upper_bound": 1000.0
+ },
+ {
+ "annotation": {
+ "bigg.reaction": "PIt2r"
+ },
+ "gene_reaction_rule": "b2987 or b3493",
+ "id": "PIt2r",
+ "lower_bound": -1000.0,
+ "metabolites": {
+ "h_c": 1.0,
+ "h_e": -1.0,
+ "pi_c": 1.0,
+ "pi_e": -1.0
+ },
+ "name": "R phosphate reversible transport via - symport",
+ "upper_bound": 1000.0
+ },
+ {
+ "annotation": {
+ "bigg.reaction": "PYK"
+ },
+ "gene_reaction_rule": "b1854 or b1676",
+ "id": "PYK",
+ "lower_bound": 0.0,
+ "metabolites": {
+ "adp_c": -1.0,
+ "atp_c": 1.0,
+ "h_c": -1.0,
+ "pep_c": -1.0,
+ "pyr_c": 1.0
+ },
+ "name": "pyruvate kinase",
+ "upper_bound": 1000.0
+ },
+ {
+ "annotation": {
+ "bigg.reaction": "TPI"
+ },
+ "gene_reaction_rule": "b3919",
+ "id": "TPI",
+ "lower_bound": -1000.0,
+ "metabolites": {
+ "dhap_c": -1.0,
+ "g3p_c": 1.0
+ },
+ "name": "triose-phosphate isomerase",
+ "upper_bound": 1000.0
+ }
+ ],
+ "version": 1
+}
\ No newline at end of file
diff --git a/cobra/test/data/mini.mat b/cobra/test/data/mini.mat
index 264b307..9e8b013 100644
Binary files a/cobra/test/data/mini.mat and b/cobra/test/data/mini.mat differ
diff --git a/cobra/test/data/mini.pickle b/cobra/test/data/mini.pickle
index c7dc9b8..013b578 100644
Binary files a/cobra/test/data/mini.pickle and b/cobra/test/data/mini.pickle differ
diff --git a/cobra/test/data/mini_cobra.xml b/cobra/test/data/mini_cobra.xml
index 3fe6a59..1d796d0 100644
--- a/cobra/test/data/mini_cobra.xml
+++ b/cobra/test/data/mini_cobra.xml
@@ -11,144 +11,138 @@
</unitDefinition>
</listOfUnitDefinitions>
<listOfCompartments>
- <compartment id="c" name="Cytoplasm" size="1"/>
- <compartment id="e" name="Extracellular" size="1"/>
+ <compartment id="c" name="cytosol" size="1"/>
+ <compartment id="e" name="extracellular" size="1"/>
</listOfCompartments>
<listOfSpecies>
- <species id="M_atp_c" name="ATP" compartment="c" charge="-4">
+ <species id="M_13dpg_c" name="3-Phospho-D-glyceroyl phosphate" compartment="c">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml"/>
</notes>
</species>
- <species id="M_h_c" name="H+" compartment="c" charge="1">
+ <species id="M_2pg_c" name="D-Glycerate 2-phosphate" compartment="c">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml"/>
</notes>
</species>
- <species id="M_adp_c" name="ADP" compartment="c" charge="-3">
+ <species id="M_3pg_c" name="3-Phospho-D-glycerate" compartment="c">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml"/>
</notes>
</species>
- <species id="M_h2o_c" name="H2O" compartment="c" charge="0">
+ <species id="M_adp_c" name="ADP" compartment="c">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml"/>
</notes>
</species>
- <species id="M_pi_c" name="Phosphate" compartment="c" charge="-2">
+ <species id="M_atp_c" name="ATP" compartment="c">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml"/>
</notes>
</species>
- <species id="M_2pg_c" name="D-Glycerate 2-phosphate" compartment="c" charge="-3">
+ <species id="M_dhap_c" name="Dihydroxyacetone phosphate" compartment="c">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml"/>
</notes>
</species>
- <species id="M_pep_c" name="Phosphoenolpyruvate" compartment="c" charge="-3">
+ <species id="M_f6p_c" name="D-Fructose 6-phosphate" compartment="c">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml"/>
</notes>
</species>
- <species id="M_glc__D_e" name="D-Glucose" compartment="e" charge="0">
+ <species id="M_fdp_c" name="D-Fructose 1,6-bisphosphate" compartment="c">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml"/>
</notes>
</species>
- <species id="M_h_e" name="H+" compartment="e" charge="1">
+ <species id="M_g3p_c" name="Glyceraldehyde 3-phosphate" compartment="c">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml"/>
</notes>
</species>
- <species id="M_g3p_c" name="Glyceraldehyde 3-phosphate" compartment="c" charge="-2">
+ <species id="M_g6p_c" name="D-Glucose 6-phosphate" compartment="c">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml"/>
</notes>
</species>
- <species id="M_dhap_c" name="Dihydroxyacetone phosphate" compartment="c" charge="-2">
+ <species id="M_glc__D_e" name="D-Glucose" compartment="e">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml"/>
</notes>
</species>
- <species id="M_fdp_c" name="D-Fructose 1,6-bisphosphate" compartment="c" charge="-4">
+ <species id="M_h2o_c" name="H2O" compartment="c">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml"/>
</notes>
</species>
- <species id="M_nadh_c" name="Nicotinamide adenine dinucleotide - reduced" compartment="c" charge="-2">
+ <species id="M_h2o_e" name="H2O" compartment="e">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml"/>
</notes>
</species>
- <species id="M_13dpg_c" name="3-Phospho-D-glyceroyl phosphate" compartment="c" charge="-4">
+ <species id="M_h_c" name="H+" compartment="c">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml"/>
</notes>
</species>
- <species id="M_nad_c" name="Nicotinamide adenine dinucleotide" compartment="c" charge="-1">
+ <species id="M_h_e" name="H+" compartment="e">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml"/>
</notes>
</species>
- <species id="M_g6p_c" name="D-Glucose 6-phosphate" compartment="c" charge="-2">
+ <species id="M_lac__D_c" name="D-Lactate" compartment="c" charge="-1">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml"/>
</notes>
</species>
- <species id="M_pyr_c" name="Pyruvate" compartment="c" charge="-1">
+ <species id="M_lac__D_e" name="D-Lactate" compartment="e" charge="-1">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml"/>
</notes>
</species>
- <species id="M_h2o_e" name="H2O" compartment="e" charge="0">
+ <species id="M_nad_c" name="Nicotinamide adenine dinucleotide" compartment="c">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml"/>
</notes>
</species>
- <species id="M_f6p_c" name="D-Fructose 6-phosphate" compartment="c" charge="-2">
+ <species id="M_nadh_c" name="Nicotinamide adenine dinucleotide - reduced" compartment="c">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml"/>
</notes>
</species>
- <species id="M_3pg_c" name="3-Phospho-D-glycerate" compartment="c" charge="-3">
+ <species id="M_pep_c" name="Phosphoenolpyruvate" compartment="c">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml"/>
</notes>
</species>
- <species id="M_pi_e" name="Phosphate" compartment="e" charge="-2">
+ <species id="M_pi_c" name="Phosphate" compartment="c">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml"/>
</notes>
</species>
- <species id="M_lac__D_c" name="D-Lactate" compartment="c" charge="-1">
+ <species id="M_pi_e" name="Phosphate" compartment="e">
<notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H5O3</p>
- </html>
+ <html xmlns="http://www.w3.org/1999/xhtml"/>
</notes>
</species>
- <species id="M_lac__D_e" name="D-Lactate" compartment="e" charge="-1">
+ <species id="M_pyr_c" name="Pyruvate" compartment="c">
<notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H5O3</p>
- </html>
+ <html xmlns="http://www.w3.org/1999/xhtml"/>
</notes>
</species>
- <species id="M_glc__D_e_boundary" name="D-Glucose" compartment="e" boundaryCondition="true" charge="0">
+ <species id="M_glc__D_e_boundary" name="D-Glucose" compartment="e" boundaryCondition="true">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml"/>
</notes>
</species>
- <species id="M_h_e_boundary" name="H+" compartment="e" boundaryCondition="true" charge="1">
+ <species id="M_h_e_boundary" name="H+" compartment="e" boundaryCondition="true">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml"/>
</notes>
</species>
<species id="M_lac__D_e_boundary" name="D-Lactate" compartment="e" boundaryCondition="true" charge="-1">
<notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H5O3</p>
- </html>
+ <html xmlns="http://www.w3.org/1999/xhtml"/>
</notes>
</species>
</listOfSpecies>
@@ -157,17 +151,17 @@
<notes>
<html xmlns="http://www.w3.org/1999/xhtml">
<p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ <p>SUBSYSTEM: </p>
</html>
</notes>
<listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1"/>
<speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
<speciesReference species="M_h_c" stoichiometry="1"/>
<speciesReference species="M_adp_c" stoichiometry="1"/>
- <speciesReference species="M_pi_c" stoichiometry="1"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
@@ -176,63 +170,65 @@
<listOfParameters>
<parameter id="LOWER_BOUND" value="8.39" units="mmol_per_gDW_per_hr"/>
<parameter id="OBJECTIVE_COEFFICIENT" value="1" units="dimensionless"/>
- <parameter id="UPPER_BOUND" value="999999" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
<parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
</listOfParameters>
</kineticLaw>
</reaction>
- <reaction id="R_ENO" name="enolase" reversible="true">
+ <reaction id="R_D_LACt2" name="D_LACt2" reversible="true">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: (b2779)</p>
- <p>SUBSYSTEM: Glycolysis/Gluconeogenesis</p>
+ <p>GENE_ASSOCIATION: b3603 or b2975</p>
+ <p>SUBSYSTEM: </p>
</html>
</notes>
<listOfReactants>
- <speciesReference species="M_2pg_c" stoichiometry="1"/>
+ <speciesReference species="M_h_e" stoichiometry="1"/>
+ <speciesReference species="M_lac__D_e" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
- <speciesReference species="M_h2o_c" stoichiometry="1"/>
- <speciesReference species="M_pep_c" stoichiometry="1"/>
+ <speciesReference species="M_lac__D_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<ci> FLUX_VALUE </ci>
</math>
<listOfParameters>
- <parameter id="LOWER_BOUND" value="-999999" units="mmol_per_gDW_per_hr"/>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
<parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
- <parameter id="UPPER_BOUND" value="999999" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
<parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
</listOfParameters>
</kineticLaw>
</reaction>
- <reaction id="R_EX_glc__D_e" name="D-Glucose exchange" reversible="true">
+ <reaction id="R_ENO" name="enolase" reversible="true">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
+ <p>GENE_ASSOCIATION: b2779</p>
<p>SUBSYSTEM: </p>
</html>
</notes>
<listOfReactants>
- <speciesReference species="M_glc__D_e" stoichiometry="1"/>
+ <speciesReference species="M_2pg_c" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
- <speciesReference species="M_glc__D_e_boundary" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_pep_c" stoichiometry="1"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<ci> FLUX_VALUE </ci>
</math>
<listOfParameters>
- <parameter id="LOWER_BOUND" value="-10" units="mmol_per_gDW_per_hr"/>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
<parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
- <parameter id="UPPER_BOUND" value="999999" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
<parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
</listOfParameters>
</kineticLaw>
</reaction>
- <reaction id="R_EX_h_e" name="H+ exchange" reversible="true">
+ <reaction id="R_EX_glc__D_e" name="D-Glucose exchange" reversible="true">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml">
<p>GENE_ASSOCIATION: </p>
@@ -240,145 +236,142 @@
</html>
</notes>
<listOfReactants>
- <speciesReference species="M_h_e" stoichiometry="1"/>
+ <speciesReference species="M_glc__D_e" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
- <speciesReference species="M_h_e_boundary" stoichiometry="1"/>
+ <speciesReference species="M_glc__D_e_boundary" stoichiometry="1"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<ci> FLUX_VALUE </ci>
</math>
<listOfParameters>
- <parameter id="LOWER_BOUND" value="-999999" units="mmol_per_gDW_per_hr"/>
+ <parameter id="LOWER_BOUND" value="-10" units="mmol_per_gDW_per_hr"/>
<parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
- <parameter id="UPPER_BOUND" value="999999" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
<parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
</listOfParameters>
</kineticLaw>
</reaction>
- <reaction id="R_FBA" name="fructose-bisphosphate aldolase" reversible="true">
+ <reaction id="R_EX_h_e" name="H+ exchange" reversible="true">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: (b2925) or (b1773) or (b2097)</p>
- <p>SUBSYSTEM: Glycolysis/Gluconeogenesis</p>
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
</html>
</notes>
<listOfReactants>
- <speciesReference species="M_fdp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_e" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
- <speciesReference species="M_g3p_c" stoichiometry="1"/>
- <speciesReference species="M_dhap_c" stoichiometry="1"/>
+ <speciesReference species="M_h_e_boundary" stoichiometry="1"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<ci> FLUX_VALUE </ci>
</math>
<listOfParameters>
- <parameter id="LOWER_BOUND" value="-999999" units="mmol_per_gDW_per_hr"/>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
<parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
- <parameter id="UPPER_BOUND" value="999999" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
<parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
</listOfParameters>
</kineticLaw>
</reaction>
- <reaction id="R_GAPD" name="glyceraldehyde-3-phosphate dehydrogenase" reversible="true">
+ <reaction id="R_EX_lac__D_e" name="D-lactate exchange" reversible="false">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: (b1779)</p>
- <p>SUBSYSTEM: Glycolysis/Gluconeogenesis</p>
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
</html>
</notes>
<listOfReactants>
- <speciesReference species="M_pi_c" stoichiometry="1"/>
- <speciesReference species="M_g3p_c" stoichiometry="1"/>
- <speciesReference species="M_nad_c" stoichiometry="1"/>
+ <speciesReference species="M_lac__D_e" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
- <speciesReference species="M_nadh_c" stoichiometry="1"/>
- <speciesReference species="M_13dpg_c" stoichiometry="1"/>
- <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_lac__D_e_boundary" stoichiometry="1"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<ci> FLUX_VALUE </ci>
</math>
<listOfParameters>
- <parameter id="LOWER_BOUND" value="-999999" units="mmol_per_gDW_per_hr"/>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
<parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
- <parameter id="UPPER_BOUND" value="999999" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
<parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
</listOfParameters>
</kineticLaw>
</reaction>
- <reaction id="R_GLCpts" name="D-glucose transport via PEP:Pyr PTS" reversible="false">
+ <reaction id="R_FBA" name="fructose-bisphosphate aldolase" reversible="true">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ((b2417 and b1621 and b2415 and b2416) or (b2417 and b1101 and b2415 and b2416) or (b1817 and b1818 and b1819 and b2415 and b2416))</p>
- <p>SUBSYSTEM: Transport, Extracellular</p>
+ <p>GENE_ASSOCIATION: b1773 or b2097 or b2925</p>
+ <p>SUBSYSTEM: </p>
</html>
</notes>
<listOfReactants>
- <speciesReference species="M_glc__D_e" stoichiometry="1"/>
- <speciesReference species="M_pep_c" stoichiometry="1"/>
+ <speciesReference species="M_fdp_c" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
- <speciesReference species="M_g6p_c" stoichiometry="1"/>
- <speciesReference species="M_pyr_c" stoichiometry="1"/>
+ <speciesReference species="M_g3p_c" stoichiometry="1"/>
+ <speciesReference species="M_dhap_c" stoichiometry="1"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<ci> FLUX_VALUE </ci>
</math>
<listOfParameters>
- <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
<parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
- <parameter id="UPPER_BOUND" value="999999" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
<parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
</listOfParameters>
</kineticLaw>
</reaction>
- <reaction id="R_H2Ot" name="H2O transport via diffusion" reversible="true">
+ <reaction id="R_GAPD" name="glyceraldehyde-3-phosphate dehydrogenase" reversible="true">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: (b0875)</p>
- <p>SUBSYSTEM: Transport, Extracellular</p>
+ <p>GENE_ASSOCIATION: b1779</p>
+ <p>SUBSYSTEM: </p>
</html>
</notes>
<listOfReactants>
- <speciesReference species="M_h2o_e" stoichiometry="1"/>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
+ <speciesReference species="M_g3p_c" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
- <speciesReference species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_13dpg_c" stoichiometry="1"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<ci> FLUX_VALUE </ci>
</math>
<listOfParameters>
- <parameter id="LOWER_BOUND" value="-999999" units="mmol_per_gDW_per_hr"/>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
<parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
- <parameter id="UPPER_BOUND" value="999999" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
<parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
</listOfParameters>
</kineticLaw>
</reaction>
- <reaction id="R_PFK" name="phosphofructokinase" reversible="false">
+ <reaction id="R_GLCpts" name="D-glucose transport via PEP:Pyr PTS" reversible="false">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: (b3916) or (b1723)</p>
- <p>SUBSYSTEM: Glycolysis/Gluconeogenesis</p>
+ <p>GENE_ASSOCIATION: ( b2417 and b1621 and b2415 and b2416 ) or ( b2417 and b1101 and b2415 and b2416 ) or ( b1817 and b1818 and b1819 and b2415 and b2416 )</p>
+ <p>SUBSYSTEM: </p>
</html>
</notes>
<listOfReactants>
- <speciesReference species="M_f6p_c" stoichiometry="1"/>
- <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_pep_c" stoichiometry="1"/>
+ <speciesReference species="M_glc__D_e" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1"/>
- <speciesReference species="M_fdp_c" stoichiometry="1"/>
- <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_g6p_c" stoichiometry="1"/>
+ <speciesReference species="M_pyr_c" stoichiometry="1"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
@@ -387,208 +380,211 @@
<listOfParameters>
<parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
<parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
- <parameter id="UPPER_BOUND" value="999999" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
<parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
</listOfParameters>
</kineticLaw>
</reaction>
- <reaction id="R_PGI" name="glucose-6-phosphate isomerase" reversible="true">
+ <reaction id="R_H2Ot" name="R H2O transport via - diffusion" reversible="true">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: (b4025)</p>
- <p>SUBSYSTEM: Glycolysis/Gluconeogenesis</p>
+ <p>GENE_ASSOCIATION: b0875 or s0001</p>
+ <p>SUBSYSTEM: </p>
</html>
</notes>
<listOfReactants>
- <speciesReference species="M_g6p_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_e" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
- <speciesReference species="M_f6p_c" stoichiometry="1"/>
+ <speciesReference species="M_h2o_c" stoichiometry="1"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<ci> FLUX_VALUE </ci>
</math>
<listOfParameters>
- <parameter id="LOWER_BOUND" value="-999999" units="mmol_per_gDW_per_hr"/>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
<parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
- <parameter id="UPPER_BOUND" value="999999" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
<parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
</listOfParameters>
</kineticLaw>
</reaction>
- <reaction id="R_PGK" name="phosphoglycerate kinase" reversible="true">
+ <reaction id="R_LDH_D" name="D-lactate dehydrogenase" reversible="true">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: (b2926)</p>
- <p>SUBSYSTEM: Glycolysis/Gluconeogenesis</p>
+ <p>GENE_ASSOCIATION: b2133 or b1380</p>
+ <p>SUBSYSTEM: </p>
</html>
</notes>
<listOfReactants>
- <speciesReference species="M_3pg_c" stoichiometry="1"/>
- <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_nad_c" stoichiometry="1"/>
+ <speciesReference species="M_lac__D_c" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1"/>
- <speciesReference species="M_13dpg_c" stoichiometry="1"/>
+ <speciesReference species="M_pyr_c" stoichiometry="1"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<ci> FLUX_VALUE </ci>
</math>
<listOfParameters>
- <parameter id="LOWER_BOUND" value="-999999" units="mmol_per_gDW_per_hr"/>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
<parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
- <parameter id="UPPER_BOUND" value="999999" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
<parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
</listOfParameters>
</kineticLaw>
</reaction>
- <reaction id="R_PGM" name="phosphoglycerate mutase" reversible="true">
+ <reaction id="R_PFK" name="phosphofructokinase" reversible="false">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: (b4395) or (b3612) or (b0755)</p>
- <p>SUBSYSTEM: Glycolysis/Gluconeogenesis</p>
+ <p>GENE_ASSOCIATION: b3916 or b1723</p>
+ <p>SUBSYSTEM: </p>
</html>
</notes>
<listOfReactants>
- <speciesReference species="M_2pg_c" stoichiometry="1"/>
+ <speciesReference species="M_f6p_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
- <speciesReference species="M_3pg_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_fdp_c" stoichiometry="1"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<ci> FLUX_VALUE </ci>
</math>
<listOfParameters>
- <parameter id="LOWER_BOUND" value="-999999" units="mmol_per_gDW_per_hr"/>
+ <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
<parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
- <parameter id="UPPER_BOUND" value="999999" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
<parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
</listOfParameters>
</kineticLaw>
</reaction>
- <reaction id="R_PIt2r" name="phosphate reversible transport via symport" reversible="true">
+ <reaction id="R_PGI" name="glucose-6-phosphate isomerase" reversible="true">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: (b2987) or (b3493)</p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>GENE_ASSOCIATION: b4025</p>
+ <p>SUBSYSTEM: </p>
</html>
</notes>
<listOfReactants>
- <speciesReference species="M_pi_e" stoichiometry="1"/>
- <speciesReference species="M_h_e" stoichiometry="1"/>
+ <speciesReference species="M_g6p_c" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
- <speciesReference species="M_pi_c" stoichiometry="1"/>
- <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_f6p_c" stoichiometry="1"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<ci> FLUX_VALUE </ci>
</math>
<listOfParameters>
- <parameter id="LOWER_BOUND" value="-999999" units="mmol_per_gDW_per_hr"/>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
<parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
- <parameter id="UPPER_BOUND" value="999999" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
<parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
</listOfParameters>
</kineticLaw>
</reaction>
- <reaction id="R_PYK" name="pyruvate kinase" reversible="false">
+ <reaction id="R_PGK" name="phosphoglycerate kinase" reversible="true">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: (b1854) or (b1676)</p>
- <p>SUBSYSTEM: Glycolysis/Gluconeogenesis</p>
+ <p>GENE_ASSOCIATION: b2926</p>
+ <p>SUBSYSTEM: </p>
</html>
</notes>
<listOfReactants>
- <speciesReference species="M_pep_c" stoichiometry="1"/>
- <speciesReference species="M_h_c" stoichiometry="1"/>
- <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_3pg_c" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
- <speciesReference species="M_pyr_c" stoichiometry="1"/>
- <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_13dpg_c" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<ci> FLUX_VALUE </ci>
</math>
<listOfParameters>
- <parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
<parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
- <parameter id="UPPER_BOUND" value="999999" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
<parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
</listOfParameters>
</kineticLaw>
</reaction>
- <reaction id="R_TPI" name="triose-phosphate isomerase" reversible="true">
+ <reaction id="R_PGM" name="phosphoglycerate mutase" reversible="true">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: (b3919)</p>
- <p>SUBSYSTEM: Glycolysis/Gluconeogenesis</p>
+ <p>GENE_ASSOCIATION: b4395 or b3612 or b0755</p>
+ <p>SUBSYSTEM: </p>
</html>
</notes>
<listOfReactants>
- <speciesReference species="M_dhap_c" stoichiometry="1"/>
+ <speciesReference species="M_2pg_c" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
- <speciesReference species="M_g3p_c" stoichiometry="1"/>
+ <speciesReference species="M_3pg_c" stoichiometry="1"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<ci> FLUX_VALUE </ci>
</math>
<listOfParameters>
- <parameter id="LOWER_BOUND" value="-999999" units="mmol_per_gDW_per_hr"/>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
<parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
- <parameter id="UPPER_BOUND" value="999999" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
<parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
</listOfParameters>
</kineticLaw>
</reaction>
- <reaction id="R_LDH_D" name="D-lactate dehydrogenase" reversible="true">
+ <reaction id="R_PIt2r" name="R phosphate reversible transport via - symport" reversible="true">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: (b2133 or b1380)</p>
- <p>SUBSYSTEM: Pyruvate Metabolism</p>
+ <p>GENE_ASSOCIATION: b2987 or b3493</p>
+ <p>SUBSYSTEM: </p>
</html>
</notes>
<listOfReactants>
- <speciesReference species="M_lac__D_c" stoichiometry="1"/>
- <speciesReference species="M_nad_c" stoichiometry="1"/>
+ <speciesReference species="M_h_e" stoichiometry="1"/>
+ <speciesReference species="M_pi_e" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
- <speciesReference species="M_nadh_c" stoichiometry="1"/>
<speciesReference species="M_h_c" stoichiometry="1"/>
- <speciesReference species="M_pyr_c" stoichiometry="1"/>
+ <speciesReference species="M_pi_c" stoichiometry="1"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<ci> FLUX_VALUE </ci>
</math>
<listOfParameters>
- <parameter id="LOWER_BOUND" value="-999999" units="mmol_per_gDW_per_hr"/>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
<parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
- <parameter id="UPPER_BOUND" value="999999" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
<parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
</listOfParameters>
</kineticLaw>
</reaction>
- <reaction id="R_EX_lac__D_e" name="D-lactate exchange" reversible="false">
+ <reaction id="R_PYK" name="pyruvate kinase" reversible="false">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
+ <p>GENE_ASSOCIATION: b1854 or b1676</p>
<p>SUBSYSTEM: </p>
</html>
</notes>
<listOfReactants>
- <speciesReference species="M_lac__D_e" stoichiometry="1"/>
+ <speciesReference species="M_adp_c" stoichiometry="1"/>
+ <speciesReference species="M_h_c" stoichiometry="1"/>
+ <speciesReference species="M_pep_c" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
- <speciesReference species="M_lac__D_e_boundary" stoichiometry="1"/>
+ <speciesReference species="M_atp_c" stoichiometry="1"/>
+ <speciesReference species="M_pyr_c" stoichiometry="1"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
@@ -597,34 +593,32 @@
<listOfParameters>
<parameter id="LOWER_BOUND" value="0" units="mmol_per_gDW_per_hr"/>
<parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
- <parameter id="UPPER_BOUND" value="999999" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
<parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
</listOfParameters>
</kineticLaw>
</reaction>
- <reaction id="R_D_LACt2" name="D_LACt2" reversible="true">
+ <reaction id="R_TPI" name="triose-phosphate isomerase" reversible="true">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: (b3603 or b2975)</p>
+ <p>GENE_ASSOCIATION: b3919</p>
<p>SUBSYSTEM: </p>
</html>
</notes>
<listOfReactants>
- <speciesReference species="M_lac__D_e" stoichiometry="1"/>
- <speciesReference species="M_h_e" stoichiometry="1"/>
+ <speciesReference species="M_dhap_c" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
- <speciesReference species="M_h_c" stoichiometry="1"/>
- <speciesReference species="M_lac__D_c" stoichiometry="1"/>
+ <speciesReference species="M_g3p_c" stoichiometry="1"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<ci> FLUX_VALUE </ci>
</math>
<listOfParameters>
- <parameter id="LOWER_BOUND" value="-999999" units="mmol_per_gDW_per_hr"/>
+ <parameter id="LOWER_BOUND" value="-1000" units="mmol_per_gDW_per_hr"/>
<parameter id="OBJECTIVE_COEFFICIENT" value="0" units="dimensionless"/>
- <parameter id="UPPER_BOUND" value="999999" units="mmol_per_gDW_per_hr"/>
+ <parameter id="UPPER_BOUND" value="1000" units="mmol_per_gDW_per_hr"/>
<parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
</listOfParameters>
</kineticLaw>
diff --git a/cobra/test/data/mini_fbc1.xml b/cobra/test/data/mini_fbc1.xml
index 66e9030..2a243e9 100644
--- a/cobra/test/data/mini_fbc1.xml
+++ b/cobra/test/data/mini_fbc1.xml
@@ -1,22 +1,28 @@
<?xml version="1.0" encoding="UTF-8"?>
<sbml xmlns="http://www.sbml.org/sbml/level3/version1/core" xmlns:fbc="http://www.sbml.org/sbml/level3/version1/fbc/version1" level="3" version="1" fbc:required="false">
- <model id="mini_textbook" substanceUnits="substance" timeUnits="dimensionless" volumeUnits="volume" areaUnits="area" lengthUnits="metre" extentUnits="substance">
+ <model id="mini_textbook" substanceUnits="substance" timeUnits="second" volumeUnits="volume" areaUnits="area" lengthUnits="metre" extentUnits="substance">
<annotation>
<listOfGeneAssociations xmlns="http://www.sbml.org/sbml/level3/version1/fbc/version1">
- <geneAssociation id="ga_1" reaction="R_ENO">
+ <geneAssociation id="ga_1" reaction="R_D_LACt2">
+ <or>
+ <gene reference="b3603"/>
+ <gene reference="b2975"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_2" reaction="R_ENO">
<gene reference="b2779"/>
</geneAssociation>
- <geneAssociation id="ga_2" reaction="R_FBA">
+ <geneAssociation id="ga_3" reaction="R_FBA">
<or>
- <gene reference="b2925"/>
<gene reference="b1773"/>
<gene reference="b2097"/>
+ <gene reference="b2925"/>
</or>
</geneAssociation>
- <geneAssociation id="ga_3" reaction="R_GAPD">
+ <geneAssociation id="ga_4" reaction="R_GAPD">
<gene reference="b1779"/>
</geneAssociation>
- <geneAssociation id="ga_4" reaction="R_GLCpts">
+ <geneAssociation id="ga_5" reaction="R_GLCpts">
<or>
<and>
<gene reference="b2417"/>
@@ -39,196 +45,211 @@
</and>
</or>
</geneAssociation>
- <geneAssociation id="ga_5" reaction="R_H2Ot">
- <gene reference="b0875"/>
+ <geneAssociation id="ga_6" reaction="R_H2Ot">
+ <or>
+ <gene reference="b0875"/>
+ <gene reference="s0001"/>
+ </or>
</geneAssociation>
- <geneAssociation id="ga_6" reaction="R_PFK">
+ <geneAssociation id="ga_7" reaction="R_LDH_D">
+ <or>
+ <gene reference="b2133"/>
+ <gene reference="b1380"/>
+ </or>
+ </geneAssociation>
+ <geneAssociation id="ga_8" reaction="R_PFK">
<or>
<gene reference="b3916"/>
<gene reference="b1723"/>
</or>
</geneAssociation>
- <geneAssociation id="ga_7" reaction="R_PGI">
+ <geneAssociation id="ga_9" reaction="R_PGI">
<gene reference="b4025"/>
</geneAssociation>
- <geneAssociation id="ga_8" reaction="R_PGK">
+ <geneAssociation id="ga_10" reaction="R_PGK">
<gene reference="b2926"/>
</geneAssociation>
- <geneAssociation id="ga_9" reaction="R_PGM">
+ <geneAssociation id="ga_11" reaction="R_PGM">
<or>
<gene reference="b4395"/>
<gene reference="b3612"/>
<gene reference="b0755"/>
</or>
</geneAssociation>
- <geneAssociation id="ga_10" reaction="R_PIt2r">
+ <geneAssociation id="ga_12" reaction="R_PIt2r">
<or>
<gene reference="b2987"/>
<gene reference="b3493"/>
</or>
</geneAssociation>
- <geneAssociation id="ga_11" reaction="R_PYK">
+ <geneAssociation id="ga_13" reaction="R_PYK">
<or>
<gene reference="b1854"/>
<gene reference="b1676"/>
</or>
</geneAssociation>
- <geneAssociation id="ga_12" reaction="R_TPI">
+ <geneAssociation id="ga_14" reaction="R_TPI">
<gene reference="b3919"/>
</geneAssociation>
- <geneAssociation id="ga_13" reaction="R_LDH_D">
- <or>
- <gene reference="b2133"/>
- <gene reference="b1380"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_14" reaction="R_D_LACt2">
- <or>
- <gene reference="b3603"/>
- <gene reference="b2975"/>
- </or>
- </geneAssociation>
</listOfGeneAssociations>
</annotation>
+ <listOfUnitDefinitions>
+ <unitDefinition id="mmol_per_gDW_per_hr">
+ <listOfUnits>
+ <unit kind="mole" exponent="1" scale="-3" multiplier="1"/>
+ <unit kind="gram" exponent="-1" scale="0" multiplier="1"/>
+ <unit kind="second" exponent="-1" scale="0" multiplier="0.000277777777777778"/>
+ </listOfUnits>
+ </unitDefinition>
+ <unitDefinition id="volume">
+ <listOfUnits>
+ <unit kind="litre" exponent="1" scale="0" multiplier="1"/>
+ </listOfUnits>
+ </unitDefinition>
+ <unitDefinition id="substance">
+ <listOfUnits>
+ <unit kind="mole" exponent="1" scale="0" multiplier="1"/>
+ </listOfUnits>
+ </unitDefinition>
+ <unitDefinition id="area">
+ <listOfUnits>
+ <unit kind="metre" exponent="2" scale="0" multiplier="1"/>
+ </listOfUnits>
+ </unitDefinition>
+ </listOfUnitDefinitions>
<listOfCompartments>
- <compartment id="c" name="Cytoplasm" spatialDimensions="3" size="1" constant="true"/>
- <compartment id="e" name="Extracellular" spatialDimensions="3" size="1" constant="true"/>
+ <compartment id="c" name="cytosol" spatialDimensions="3" size="1" units="volume" constant="true"/>
+ <compartment id="e" name="extracellular" spatialDimensions="3" size="1" units="volume" constant="true"/>
</listOfCompartments>
<listOfSpecies>
- <species id="M_atp_c" name="ATP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4">
+ <species id="M_13dpg_c" name="3-Phospho-D-glyceroyl phosphate" compartment="c" substanceUnits="substance" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml"/>
</notes>
</species>
- <species id="M_h_c" name="H+" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1">
+ <species id="M_2pg_c" name="D-Glycerate 2-phosphate" compartment="c" substanceUnits="substance" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml"/>
</notes>
</species>
- <species id="M_adp_c" name="ADP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3">
+ <species id="M_3pg_c" name="3-Phospho-D-glycerate" compartment="c" substanceUnits="substance" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml"/>
</notes>
</species>
- <species id="M_h2o_c" name="H2O" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
+ <species id="M_adp_c" name="ADP" compartment="c" substanceUnits="substance" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml"/>
</notes>
</species>
- <species id="M_pi_c" name="Phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2">
+ <species id="M_atp_c" name="ATP" compartment="c" substanceUnits="substance" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml"/>
</notes>
</species>
- <species id="M_2pg_c" name="D-Glycerate 2-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3">
+ <species id="M_dhap_c" name="Dihydroxyacetone phosphate" compartment="c" substanceUnits="substance" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml"/>
</notes>
</species>
- <species id="M_pep_c" name="Phosphoenolpyruvate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3">
+ <species id="M_f6p_c" name="D-Fructose 6-phosphate" compartment="c" substanceUnits="substance" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml"/>
</notes>
</species>
- <species id="M_glc__D_e" name="D-Glucose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
+ <species id="M_fdp_c" name="D-Fructose 1,6-bisphosphate" compartment="c" substanceUnits="substance" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml"/>
</notes>
</species>
- <species id="M_h_e" name="H+" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1">
+ <species id="M_g3p_c" name="Glyceraldehyde 3-phosphate" compartment="c" substanceUnits="substance" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml"/>
</notes>
</species>
- <species id="M_g3p_c" name="Glyceraldehyde 3-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2">
+ <species id="M_g6p_c" name="D-Glucose 6-phosphate" compartment="c" substanceUnits="substance" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml"/>
</notes>
</species>
- <species id="M_dhap_c" name="Dihydroxyacetone phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2">
+ <species id="M_glc__D_e" name="D-Glucose" compartment="e" substanceUnits="substance" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml"/>
</notes>
</species>
- <species id="M_fdp_c" name="D-Fructose 1,6-bisphosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4">
+ <species id="M_h2o_c" name="H2O" compartment="c" substanceUnits="substance" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml"/>
</notes>
</species>
- <species id="M_nadh_c" name="Nicotinamide adenine dinucleotide - reduced" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2">
+ <species id="M_h2o_e" name="H2O" compartment="e" substanceUnits="substance" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml"/>
</notes>
</species>
- <species id="M_13dpg_c" name="3-Phospho-D-glyceroyl phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4">
+ <species id="M_h_c" name="H+" compartment="c" substanceUnits="substance" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml"/>
</notes>
</species>
- <species id="M_nad_c" name="Nicotinamide adenine dinucleotide" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1">
+ <species id="M_h_e" name="H+" compartment="e" substanceUnits="substance" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml"/>
</notes>
</species>
- <species id="M_g6p_c" name="D-Glucose 6-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2">
+ <species id="M_lac__D_c" name="D-Lactate" compartment="c" substanceUnits="substance" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml"/>
</notes>
</species>
- <species id="M_pyr_c" name="Pyruvate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1">
+ <species id="M_lac__D_e" name="D-Lactate" compartment="e" substanceUnits="substance" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml"/>
</notes>
</species>
- <species id="M_h2o_e" name="H2O" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
+ <species id="M_nad_c" name="Nicotinamide adenine dinucleotide" compartment="c" substanceUnits="substance" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml"/>
</notes>
</species>
- <species id="M_f6p_c" name="D-Fructose 6-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2">
+ <species id="M_nadh_c" name="Nicotinamide adenine dinucleotide - reduced" compartment="c" substanceUnits="substance" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml"/>
</notes>
</species>
- <species id="M_3pg_c" name="3-Phospho-D-glycerate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3">
+ <species id="M_pep_c" name="Phosphoenolpyruvate" compartment="c" substanceUnits="substance" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml"/>
</notes>
</species>
- <species id="M_pi_e" name="Phosphate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2">
+ <species id="M_pi_c" name="Phosphate" compartment="c" substanceUnits="substance" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml"/>
</notes>
</species>
- <species id="M_lac__D_c" name="D-Lactate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H5O3">
+ <species id="M_pi_e" name="Phosphate" compartment="e" substanceUnits="substance" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
<notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H5O3</p>
- </html>
+ <html xmlns="http://www.w3.org/1999/xhtml"/>
</notes>
</species>
- <species id="M_lac__D_e" name="D-Lactate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H5O3">
+ <species id="M_pyr_c" name="Pyruvate" compartment="c" substanceUnits="substance" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
<notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H5O3</p>
- </html>
+ <html xmlns="http://www.w3.org/1999/xhtml"/>
</notes>
</species>
- <species id="M_glc__D_e_boundary" name="D-Glucose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false">
+ <species id="M_glc__D_e_boundary" name="D-Glucose" compartment="e" substanceUnits="substance" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml"/>
</notes>
</species>
- <species id="M_h_e_boundary" name="H+" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="1">
+ <species id="M_h_e_boundary" name="H+" compartment="e" substanceUnits="substance" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml"/>
</notes>
</species>
- <species id="M_lac__D_e_boundary" name="D-Lactate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H5O3">
+ <species id="M_lac__D_e_boundary" name="D-Lactate" compartment="e" substanceUnits="substance" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1">
<notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H5O3</p>
- </html>
+ <html xmlns="http://www.w3.org/1999/xhtml"/>
</notes>
</species>
</listOfSpecies>
@@ -237,24 +258,40 @@
<notes>
<html xmlns="http://www.w3.org/1999/xhtml">
<p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Oxidative Phosphorylation</p>
+ <p>SUBSYSTEM: </p>
</html>
</notes>
<listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
<speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
</listOfReactants>
<listOfProducts>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
<speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
<speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
+ <reaction id="R_D_LACt2" name="D_LACt2" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b3603 or b2975</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_h_e" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_lac__D_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_lac__D_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
</listOfProducts>
</reaction>
<reaction id="R_ENO" name="enolase" reversible="true" fast="false">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: (b2779)</p>
- <p>SUBSYSTEM: Glycolysis/Gluconeogenesis</p>
+ <p>GENE_ASSOCIATION: b2779</p>
+ <p>SUBSYSTEM: </p>
</html>
</notes>
<listOfReactants>
@@ -293,11 +330,25 @@
<speciesReference species="M_h_e_boundary" stoichiometry="1" constant="true"/>
</listOfProducts>
</reaction>
+ <reaction id="R_EX_lac__D_e" name="D-lactate exchange" reversible="false" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: </p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_lac__D_e" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_lac__D_e_boundary" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
<reaction id="R_FBA" name="fructose-bisphosphate aldolase" reversible="true" fast="false">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: (b2925) or (b1773) or (b2097)</p>
- <p>SUBSYSTEM: Glycolysis/Gluconeogenesis</p>
+ <p>GENE_ASSOCIATION: b1773 or b2097 or b2925</p>
+ <p>SUBSYSTEM: </p>
</html>
</notes>
<listOfReactants>
@@ -311,42 +362,42 @@
<reaction id="R_GAPD" name="glyceraldehyde-3-phosphate dehydrogenase" reversible="true" fast="false">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: (b1779)</p>
- <p>SUBSYSTEM: Glycolysis/Gluconeogenesis</p>
+ <p>GENE_ASSOCIATION: b1779</p>
+ <p>SUBSYSTEM: </p>
</html>
</notes>
<listOfReactants>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
<speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
<speciesReference species="M_g3p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
</listOfReactants>
<listOfProducts>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_13dpg_c" stoichiometry="1" constant="true"/>
<speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_13dpg_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
</listOfProducts>
</reaction>
<reaction id="R_GLCpts" name="D-glucose transport via PEP:Pyr PTS" reversible="false" fast="false">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ((b2417 and b1621 and b2415 and b2416) or (b2417 and b1101 and b2415 and b2416) or (b1817 and b1818 and b1819 and b2415 and b2416))</p>
- <p>SUBSYSTEM: Transport, Extracellular</p>
+ <p>GENE_ASSOCIATION: ( b2417 and b1621 and b2415 and b2416 ) or ( b2417 and b1101 and b2415 and b2416 ) or ( b1817 and b1818 and b1819 and b2415 and b2416 )</p>
+ <p>SUBSYSTEM: </p>
</html>
</notes>
<listOfReactants>
- <speciesReference species="M_glc__D_e" stoichiometry="1" constant="true"/>
<speciesReference species="M_pep_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_glc__D_e" stoichiometry="1" constant="true"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="M_g6p_c" stoichiometry="1" constant="true"/>
<speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
</listOfProducts>
</reaction>
- <reaction id="R_H2Ot" name="H2O transport via diffusion" reversible="true" fast="false">
+ <reaction id="R_H2Ot" name="R H2O transport via - diffusion" reversible="true" fast="false">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: (b0875)</p>
- <p>SUBSYSTEM: Transport, Extracellular</p>
+ <p>GENE_ASSOCIATION: b0875 or s0001</p>
+ <p>SUBSYSTEM: </p>
</html>
</notes>
<listOfReactants>
@@ -356,11 +407,28 @@
<speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
</listOfProducts>
</reaction>
+ <reaction id="R_LDH_D" name="D-lactate dehydrogenase" reversible="true" fast="false">
+ <notes>
+ <html xmlns="http://www.w3.org/1999/xhtml">
+ <p>GENE_ASSOCIATION: b2133 or b1380</p>
+ <p>SUBSYSTEM: </p>
+ </html>
+ </notes>
+ <listOfReactants>
+ <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_lac__D_c" stoichiometry="1" constant="true"/>
+ </listOfReactants>
+ <listOfProducts>
+ <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ </listOfProducts>
+ </reaction>
<reaction id="R_PFK" name="phosphofructokinase" reversible="false" fast="false">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: (b3916) or (b1723)</p>
- <p>SUBSYSTEM: Glycolysis/Gluconeogenesis</p>
+ <p>GENE_ASSOCIATION: b3916 or b1723</p>
+ <p>SUBSYSTEM: </p>
</html>
</notes>
<listOfReactants>
@@ -368,16 +436,16 @@
<speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
</listOfReactants>
<listOfProducts>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
<speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
<speciesReference species="M_fdp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
</listOfProducts>
</reaction>
<reaction id="R_PGI" name="glucose-6-phosphate isomerase" reversible="true" fast="false">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: (b4025)</p>
- <p>SUBSYSTEM: Glycolysis/Gluconeogenesis</p>
+ <p>GENE_ASSOCIATION: b4025</p>
+ <p>SUBSYSTEM: </p>
</html>
</notes>
<listOfReactants>
@@ -390,24 +458,24 @@
<reaction id="R_PGK" name="phosphoglycerate kinase" reversible="true" fast="false">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: (b2926)</p>
- <p>SUBSYSTEM: Glycolysis/Gluconeogenesis</p>
+ <p>GENE_ASSOCIATION: b2926</p>
+ <p>SUBSYSTEM: </p>
</html>
</notes>
<listOfReactants>
- <speciesReference species="M_3pg_c" stoichiometry="1" constant="true"/>
<speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_3pg_c" stoichiometry="1" constant="true"/>
</listOfReactants>
<listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
<speciesReference species="M_13dpg_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
</listOfProducts>
</reaction>
<reaction id="R_PGM" name="phosphoglycerate mutase" reversible="true" fast="false">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: (b4395) or (b3612) or (b0755)</p>
- <p>SUBSYSTEM: Glycolysis/Gluconeogenesis</p>
+ <p>GENE_ASSOCIATION: b4395 or b3612 or b0755</p>
+ <p>SUBSYSTEM: </p>
</html>
</notes>
<listOfReactants>
@@ -417,44 +485,44 @@
<speciesReference species="M_3pg_c" stoichiometry="1" constant="true"/>
</listOfProducts>
</reaction>
- <reaction id="R_PIt2r" name="phosphate reversible transport via symport" reversible="true" fast="false">
+ <reaction id="R_PIt2r" name="R phosphate reversible transport via - symport" reversible="true" fast="false">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: (b2987) or (b3493)</p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
+ <p>GENE_ASSOCIATION: b2987 or b3493</p>
+ <p>SUBSYSTEM: </p>
</html>
</notes>
<listOfReactants>
- <speciesReference species="M_pi_e" stoichiometry="1" constant="true"/>
<speciesReference species="M_h_e" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_e" stoichiometry="1" constant="true"/>
</listOfReactants>
<listOfProducts>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
<speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
</listOfProducts>
</reaction>
<reaction id="R_PYK" name="pyruvate kinase" reversible="false" fast="false">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: (b1854) or (b1676)</p>
- <p>SUBSYSTEM: Glycolysis/Gluconeogenesis</p>
+ <p>GENE_ASSOCIATION: b1854 or b1676</p>
+ <p>SUBSYSTEM: </p>
</html>
</notes>
<listOfReactants>
- <speciesReference species="M_pep_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
<speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pep_c" stoichiometry="1" constant="true"/>
</listOfReactants>
<listOfProducts>
- <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
<speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+ <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
</listOfProducts>
</reaction>
<reaction id="R_TPI" name="triose-phosphate isomerase" reversible="true" fast="false">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: (b3919)</p>
- <p>SUBSYSTEM: Glycolysis/Gluconeogenesis</p>
+ <p>GENE_ASSOCIATION: b3919</p>
+ <p>SUBSYSTEM: </p>
</html>
</notes>
<listOfReactants>
@@ -464,91 +532,44 @@
<speciesReference species="M_g3p_c" stoichiometry="1" constant="true"/>
</listOfProducts>
</reaction>
- <reaction id="R_LDH_D" name="D-lactate dehydrogenase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: (b2133 or b1380)</p>
- <p>SUBSYSTEM: Pyruvate Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_lac__D_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_lac__D_e" name="D-lactate exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_lac__D_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_lac__D_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_D_LACt2" name="D_LACt2" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: (b3603 or b2975)</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_lac__D_e" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_lac__D_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
</listOfReactions>
<fbc:listOfFluxBounds>
<fbc:fluxBound fbc:reaction="R_ATPM" fbc:operation="greaterEqual" fbc:value="8.39"/>
- <fbc:fluxBound fbc:reaction="R_ATPM" fbc:operation="lessEqual" fbc:value="999999"/>
- <fbc:fluxBound fbc:reaction="R_ENO" fbc:operation="greaterEqual" fbc:value="-999999"/>
- <fbc:fluxBound fbc:reaction="R_ENO" fbc:operation="lessEqual" fbc:value="999999"/>
+ <fbc:fluxBound fbc:reaction="R_ATPM" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_D_LACt2" fbc:operation="greaterEqual" fbc:value="-1000"/>
+ <fbc:fluxBound fbc:reaction="R_D_LACt2" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_ENO" fbc:operation="greaterEqual" fbc:value="-1000"/>
+ <fbc:fluxBound fbc:reaction="R_ENO" fbc:operation="lessEqual" fbc:value="1000"/>
<fbc:fluxBound fbc:reaction="R_EX_glc__D_e" fbc:operation="greaterEqual" fbc:value="-10"/>
- <fbc:fluxBound fbc:reaction="R_EX_glc__D_e" fbc:operation="lessEqual" fbc:value="999999"/>
- <fbc:fluxBound fbc:reaction="R_EX_h_e" fbc:operation="greaterEqual" fbc:value="-999999"/>
- <fbc:fluxBound fbc:reaction="R_EX_h_e" fbc:operation="lessEqual" fbc:value="999999"/>
- <fbc:fluxBound fbc:reaction="R_FBA" fbc:operation="greaterEqual" fbc:value="-999999"/>
- <fbc:fluxBound fbc:reaction="R_FBA" fbc:operation="lessEqual" fbc:value="999999"/>
- <fbc:fluxBound fbc:reaction="R_GAPD" fbc:operation="greaterEqual" fbc:value="-999999"/>
- <fbc:fluxBound fbc:reaction="R_GAPD" fbc:operation="lessEqual" fbc:value="999999"/>
+ <fbc:fluxBound fbc:reaction="R_EX_glc__D_e" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_EX_h_e" fbc:operation="greaterEqual" fbc:value="-1000"/>
+ <fbc:fluxBound fbc:reaction="R_EX_h_e" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_EX_lac__D_e" fbc:operation="greaterEqual" fbc:value="0"/>
+ <fbc:fluxBound fbc:reaction="R_EX_lac__D_e" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_FBA" fbc:operation="greaterEqual" fbc:value="-1000"/>
+ <fbc:fluxBound fbc:reaction="R_FBA" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_GAPD" fbc:operation="greaterEqual" fbc:value="-1000"/>
+ <fbc:fluxBound fbc:reaction="R_GAPD" fbc:operation="lessEqual" fbc:value="1000"/>
<fbc:fluxBound fbc:reaction="R_GLCpts" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GLCpts" fbc:operation="lessEqual" fbc:value="999999"/>
- <fbc:fluxBound fbc:reaction="R_H2Ot" fbc:operation="greaterEqual" fbc:value="-999999"/>
- <fbc:fluxBound fbc:reaction="R_H2Ot" fbc:operation="lessEqual" fbc:value="999999"/>
+ <fbc:fluxBound fbc:reaction="R_GLCpts" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_H2Ot" fbc:operation="greaterEqual" fbc:value="-1000"/>
+ <fbc:fluxBound fbc:reaction="R_H2Ot" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_LDH_D" fbc:operation="greaterEqual" fbc:value="-1000"/>
+ <fbc:fluxBound fbc:reaction="R_LDH_D" fbc:operation="lessEqual" fbc:value="1000"/>
<fbc:fluxBound fbc:reaction="R_PFK" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PFK" fbc:operation="lessEqual" fbc:value="999999"/>
- <fbc:fluxBound fbc:reaction="R_PGI" fbc:operation="greaterEqual" fbc:value="-999999"/>
- <fbc:fluxBound fbc:reaction="R_PGI" fbc:operation="lessEqual" fbc:value="999999"/>
- <fbc:fluxBound fbc:reaction="R_PGK" fbc:operation="greaterEqual" fbc:value="-999999"/>
- <fbc:fluxBound fbc:reaction="R_PGK" fbc:operation="lessEqual" fbc:value="999999"/>
- <fbc:fluxBound fbc:reaction="R_PGM" fbc:operation="greaterEqual" fbc:value="-999999"/>
- <fbc:fluxBound fbc:reaction="R_PGM" fbc:operation="lessEqual" fbc:value="999999"/>
- <fbc:fluxBound fbc:reaction="R_PIt2r" fbc:operation="greaterEqual" fbc:value="-999999"/>
- <fbc:fluxBound fbc:reaction="R_PIt2r" fbc:operation="lessEqual" fbc:value="999999"/>
+ <fbc:fluxBound fbc:reaction="R_PFK" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_PGI" fbc:operation="greaterEqual" fbc:value="-1000"/>
+ <fbc:fluxBound fbc:reaction="R_PGI" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_PGK" fbc:operation="greaterEqual" fbc:value="-1000"/>
+ <fbc:fluxBound fbc:reaction="R_PGK" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_PGM" fbc:operation="greaterEqual" fbc:value="-1000"/>
+ <fbc:fluxBound fbc:reaction="R_PGM" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_PIt2r" fbc:operation="greaterEqual" fbc:value="-1000"/>
+ <fbc:fluxBound fbc:reaction="R_PIt2r" fbc:operation="lessEqual" fbc:value="1000"/>
<fbc:fluxBound fbc:reaction="R_PYK" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PYK" fbc:operation="lessEqual" fbc:value="999999"/>
- <fbc:fluxBound fbc:reaction="R_TPI" fbc:operation="greaterEqual" fbc:value="-999999"/>
- <fbc:fluxBound fbc:reaction="R_TPI" fbc:operation="lessEqual" fbc:value="999999"/>
- <fbc:fluxBound fbc:reaction="R_LDH_D" fbc:operation="greaterEqual" fbc:value="-999999"/>
- <fbc:fluxBound fbc:reaction="R_LDH_D" fbc:operation="lessEqual" fbc:value="999999"/>
- <fbc:fluxBound fbc:reaction="R_EX_lac__D_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_lac__D_e" fbc:operation="lessEqual" fbc:value="999999"/>
- <fbc:fluxBound fbc:reaction="R_D_LACt2" fbc:operation="greaterEqual" fbc:value="-999999"/>
- <fbc:fluxBound fbc:reaction="R_D_LACt2" fbc:operation="lessEqual" fbc:value="999999"/>
+ <fbc:fluxBound fbc:reaction="R_PYK" fbc:operation="lessEqual" fbc:value="1000"/>
+ <fbc:fluxBound fbc:reaction="R_TPI" fbc:operation="greaterEqual" fbc:value="-1000"/>
+ <fbc:fluxBound fbc:reaction="R_TPI" fbc:operation="lessEqual" fbc:value="1000"/>
</fbc:listOfFluxBounds>
<fbc:listOfObjectives fbc:activeObjective="obj">
<fbc:objective fbc:id="obj" fbc:type="maximize">
diff --git a/cobra/test/data/mini_fbc2.xml b/cobra/test/data/mini_fbc2.xml
index 526a88b..8ee34bd 100644
--- a/cobra/test/data/mini_fbc2.xml
+++ b/cobra/test/data/mini_fbc2.xml
@@ -1,335 +1,1367 @@
-<?xml version='1.0' encoding='UTF-8'?>
<sbml xmlns:fbc="http://www.sbml.org/sbml/level3/version1/fbc/version2" level="3" sboTerm="SBO:0000624" version="1" xmlns="http://www.sbml.org/sbml/level3/version1/core" fbc:required="false">
- <model id="mini_textbook" fbc:strict="true">
+ <model fbc:strict="true" id="mini_textbook">
<listOfUnitDefinitions>
<unitDefinition id="mmol_per_gDW_per_hr">
<listOfUnits>
- <unit exponent="1" kind="mole" multiplier="1" scale="-3" />
- <unit exponent="-1" kind="gram" multiplier="1" scale="0" />
- <unit exponent="-1" kind="second" multiplier="3600" scale="0" />
+ <unit exponent="1" kind="mole" multiplier="1" scale="-3"/>
+ <unit exponent="-1" kind="gram" multiplier="1" scale="0"/>
+ <unit exponent="-1" kind="second" multiplier="3600" scale="0"/>
</listOfUnits>
</unitDefinition>
</listOfUnitDefinitions>
<fbc:listOfObjectives fbc:activeObjective="obj">
<fbc:objective fbc:id="obj" fbc:type="maximize">
<fbc:listOfFluxObjectives>
- <fbc:fluxObjective fbc:coefficient="1" fbc:reaction="R_ATPM" />
+ <fbc:fluxObjective fbc:reaction="R_ATPM" fbc:coefficient="1"/>
</fbc:listOfFluxObjectives>
</fbc:objective>
</fbc:listOfObjectives>
<listOfParameters>
- <parameter constant="true" id="cobra_default_lb" sboTerm="SBO:0000626" units="mmol_per_gDW_per_hr" value="-999999" />
- <parameter constant="true" id="cobra_default_ub" sboTerm="SBO:0000626" units="mmol_per_gDW_per_hr" value="999999" />
- <parameter constant="true" id="cobra_0_bound" sboTerm="SBO:0000626" units="mmol_per_gDW_per_hr" value="0" />
- <parameter constant="true" id="R_ATPM_lower_bound" sboTerm="SBO:0000625" units="mmol_per_gDW_per_hr" value="8.39" />
- <parameter constant="true" id="R_EX_glc__D_e_lower_bound" sboTerm="SBO:0000625" units="mmol_per_gDW_per_hr" value="-10" />
+ <parameter constant="true" id="cobra_default_lb" sboTerm="SBO:0000626" units="mmol_per_gDW_per_hr" value="-1000"/>
+ <parameter constant="true" id="cobra_default_ub" sboTerm="SBO:0000626" units="mmol_per_gDW_per_hr" value="1000"/>
+ <parameter constant="true" id="cobra_0_bound" sboTerm="SBO:0000626" units="mmol_per_gDW_per_hr" value="0"/>
+ <parameter constant="true" id="R_ATPM_lower_bound" sboTerm="SBO:0000625" units="mmol_per_gDW_per_hr" value="8.39"/>
+ <parameter constant="true" id="R_EX_glc__D_e_lower_bound" sboTerm="SBO:0000625" units="mmol_per_gDW_per_hr" value="-10"/>
</listOfParameters>
<listOfCompartments>
- <compartment constant="true" id="c" name="Cytoplasm" />
- <compartment constant="true" id="e" name="Extracellular" />
+ <compartment constant="true" id="c" name="cytosol"/>
+ <compartment constant="true" id="e" name="extracellular"/>
</listOfCompartments>
<listOfSpecies>
- <species boundaryCondition="false" compartment="c" constant="false" hasOnlySubstanceUnits="false" id="M_atp_c" name="ATP" fbc:charge="-4" fbc:chemicalFormula="C10H12N5O13P3" />
- <species boundaryCondition="false" compartment="c" constant="false" hasOnlySubstanceUnits="false" id="M_h_c" name="H+" fbc:charge="1" fbc:chemicalFormula="H" />
- <species boundaryCondition="false" compartment="c" constant="false" hasOnlySubstanceUnits="false" id="M_adp_c" name="ADP" fbc:charge="-3" fbc:chemicalFormula="C10H12N5O10P2" />
- <species boundaryCondition="false" compartment="c" constant="false" hasOnlySubstanceUnits="false" id="M_h2o_c" name="H2O" fbc:charge="0" fbc:chemicalFormula="H2O" />
- <species boundaryCondition="false" compartment="c" constant="false" hasOnlySubstanceUnits="false" id="M_pi_c" name="Phosphate" fbc:charge="-2" fbc:chemicalFormula="HO4P" />
- <species boundaryCondition="false" compartment="c" constant="false" hasOnlySubstanceUnits="false" id="M_2pg_c" name="D-Glycerate 2-phosphate" fbc:charge="-3" fbc:chemicalFormula="C3H4O7P" />
- <species boundaryCondition="false" compartment="c" constant="false" hasOnlySubstanceUnits="false" id="M_pep_c" name="Phosphoenolpyruvate" fbc:charge="-3" fbc:chemicalFormula="C3H2O6P" />
- <species boundaryCondition="false" compartment="e" constant="false" hasOnlySubstanceUnits="false" id="M_glc__D_e" name="D-Glucose" fbc:charge="0" fbc:chemicalFormula="C6H12O6" />
- <species boundaryCondition="false" compartment="e" constant="false" hasOnlySubstanceUnits="false" id="M_h_e" name="H+" fbc:charge="1" fbc:chemicalFormula="H" />
- <species boundaryCondition="false" compartment="c" constant="false" hasOnlySubstanceUnits="false" id="M_g3p_c" name="Glyceraldehyde 3-phosphate" fbc:charge="-2" fbc:chemicalFormula="C3H5O6P" />
- <species boundaryCondition="false" compartment="c" constant="false" hasOnlySubstanceUnits="false" id="M_dhap_c" name="Dihydroxyacetone phosphate" fbc:charge="-2" fbc:chemicalFormula="C3H5O6P" />
- <species boundaryCondition="false" compartment="c" constant="false" hasOnlySubstanceUnits="false" id="M_fdp_c" name="D-Fructose 1,6-bisphosphate" fbc:charge="-4" fbc:chemicalFormula="C6H10O12P2" />
- <species boundaryCondition="false" compartment="c" constant="false" hasOnlySubstanceUnits="false" id="M_nadh_c" name="Nicotinamide adenine dinucleotide - reduced" fbc:charge="-2" fbc:chemicalFormula="C21H27N7O14P2" />
- <species boundaryCondition="false" compartment="c" constant="false" hasOnlySubstanceUnits="false" id="M_13dpg_c" name="3-Phospho-D-glyceroyl phosphate" fbc:charge="-4" fbc:chemicalFormula="C3H4O10P2" />
- <species boundaryCondition="false" compartment="c" constant="false" hasOnlySubstanceUnits="false" id="M_nad_c" name="Nicotinamide adenine dinucleotide" fbc:charge="-1" fbc:chemicalFormula="C21H26N7O14P2" />
- <species boundaryCondition="false" compartment="c" constant="false" hasOnlySubstanceUnits="false" id="M_g6p_c" name="D-Glucose 6-phosphate" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P" />
- <species boundaryCondition="false" compartment="c" constant="false" hasOnlySubstanceUnits="false" id="M_pyr_c" name="Pyruvate" fbc:charge="-1" fbc:chemicalFormula="C3H3O3" />
- <species boundaryCondition="false" compartment="e" constant="false" hasOnlySubstanceUnits="false" id="M_h2o_e" name="H2O" fbc:charge="0" fbc:chemicalFormula="H2O" />
- <species boundaryCondition="false" compartment="c" constant="false" hasOnlySubstanceUnits="false" id="M_f6p_c" name="D-Fructose 6-phosphate" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P" />
- <species boundaryCondition="false" compartment="c" constant="false" hasOnlySubstanceUnits="false" id="M_3pg_c" name="3-Phospho-D-glycerate" fbc:charge="-3" fbc:chemicalFormula="C3H4O7P" />
- <species boundaryCondition="false" compartment="e" constant="false" hasOnlySubstanceUnits="false" id="M_pi_e" name="Phosphate" fbc:charge="-2" fbc:chemicalFormula="HO4P" />
- <species boundaryCondition="false" compartment="c" constant="false" hasOnlySubstanceUnits="false" id="M_lac__D_c" name="D-Lactate" fbc:charge="-1" fbc:chemicalFormula="C3H5O3" />
- <species boundaryCondition="false" compartment="e" constant="false" hasOnlySubstanceUnits="false" id="M_lac__D_e" name="D-Lactate" fbc:charge="-1" fbc:chemicalFormula="C3H5O3" />
+ <species boundaryCondition="false" constant="false" hasOnlySubstanceUnits="false" id="M_13dpg_c" name="3-Phospho-D-glyceroyl phosphate" metaid="M_13dpg_c" compartment="c" fbc:chemicalFormula="C3H4O10P2">
+ <sbml:annotation xmlns:sbml="http://www.sbml.org/sbml/level3/version1/core">
+ <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
+ <rdf:Description rdf:about="#M_13dpg_c">
+ <bqbiol:is xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
+ <rdf:Bag>
+ <rdf:li rdf:resource="http://identifiers.org/bigg.metabolite/13dpg"/>
+ <rdf:li rdf:resource="http://identifiers.org/biocyc/DPG"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:16001"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:1658"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:20189"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:57604"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:11881"/>
+ <rdf:li rdf:resource="http://identifiers.org/hmdb/HMDB01270"/>
+ <rdf:li rdf:resource="http://identifiers.org/kegg.compound/C00236"/>
+ <rdf:li rdf:resource="http://identifiers.org/pubchem.substance/3535"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_29800"/>
+ <rdf:li rdf:resource="http://identifiers.org/seed.compound/cpd00203"/>
+ <rdf:li rdf:resource="http://identifiers.org/unipathway.compound/UPC00236"/>
+ </rdf:Bag>
+ </bqbiol:is>
+ </rdf:Description>
+ </rdf:RDF>
+ </sbml:annotation>
+ </species>
+ <species boundaryCondition="false" constant="false" hasOnlySubstanceUnits="false" id="M_2pg_c" name="D-Glycerate 2-phosphate" metaid="M_2pg_c" compartment="c" fbc:chemicalFormula="C3H4O7P">
+ <sbml:annotation xmlns:sbml="http://www.sbml.org/sbml/level3/version1/core">
+ <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
+ <rdf:Description rdf:about="#M_2pg_c">
+ <bqbiol:is xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
+ <rdf:Bag>
+ <rdf:li rdf:resource="http://identifiers.org/bigg.metabolite/2pg"/>
+ <rdf:li rdf:resource="http://identifiers.org/biocyc/2-PG"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:1267"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:58289"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:17835"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:21028"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:11651"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:12986"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:24344"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:39868"/>
+ <rdf:li rdf:resource="http://identifiers.org/hmdb/HMDB03391"/>
+ <rdf:li rdf:resource="http://identifiers.org/hmdb/HMDB00362"/>
+ <rdf:li rdf:resource="http://identifiers.org/kegg.compound/C00631"/>
+ <rdf:li rdf:resource="http://identifiers.org/pubchem.substance/3904"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_30485"/>
+ <rdf:li rdf:resource="http://identifiers.org/seed.compound/cpd00482"/>
+ <rdf:li rdf:resource="http://identifiers.org/unipathway.compound/UPC00631"/>
+ </rdf:Bag>
+ </bqbiol:is>
+ </rdf:Description>
+ </rdf:RDF>
+ </sbml:annotation>
+ </species>
+ <species boundaryCondition="false" constant="false" hasOnlySubstanceUnits="false" id="M_3pg_c" name="3-Phospho-D-glycerate" metaid="M_3pg_c" compartment="c" fbc:chemicalFormula="C3H4O7P">
+ <sbml:annotation xmlns:sbml="http://www.sbml.org/sbml/level3/version1/core">
+ <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
+ <rdf:Description rdf:about="#M_3pg_c">
+ <bqbiol:is xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
+ <rdf:Bag>
+ <rdf:li rdf:resource="http://identifiers.org/bigg.metabolite/3pg"/>
+ <rdf:li rdf:resource="http://identifiers.org/biocyc/G3P"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:40016"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:58272"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:57998"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:11879"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:1657"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:1659"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:17050"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:21029"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:11882"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:11880"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:12987"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:17794"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:24345"/>
+ <rdf:li rdf:resource="http://identifiers.org/hmdb/HMDB00807"/>
+ <rdf:li rdf:resource="http://identifiers.org/kegg.compound/C00197"/>
+ <rdf:li rdf:resource="http://identifiers.org/kegg.compound/C00597"/>
+ <rdf:li rdf:resource="http://identifiers.org/pubchem.substance/3497"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_29728"/>
+ <rdf:li rdf:resource="http://identifiers.org/seed.compound/cpd00169"/>
+ <rdf:li rdf:resource="http://identifiers.org/unipathway.compound/UPC00597"/>
+ <rdf:li rdf:resource="http://identifiers.org/unipathway.compound/UPC00197"/>
+ </rdf:Bag>
+ </bqbiol:is>
+ </rdf:Description>
+ </rdf:RDF>
+ </sbml:annotation>
+ </species>
+ <species boundaryCondition="false" constant="false" hasOnlySubstanceUnits="false" id="M_adp_c" name="ADP" metaid="M_adp_c" compartment="c" fbc:chemicalFormula="C10H12N5O10P2">
+ <sbml:annotation xmlns:sbml="http://www.sbml.org/sbml/level3/version1/core">
+ <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
+ <rdf:Description rdf:about="#M_adp_c">
+ <bqbiol:is xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
+ <rdf:Bag>
+ <rdf:li rdf:resource="http://identifiers.org/bigg.metabolite/adp"/>
+ <rdf:li rdf:resource="http://identifiers.org/biocyc/ADP"/>
+ <rdf:li rdf:resource="http://identifiers.org/biocyc/ADP-GROUP"/>
+ <rdf:li rdf:resource="http://identifiers.org/cas/58-64-0"/>
+ <rdf:li rdf:resource="http://identifiers.org/cas/58-64-0"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:13222"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:16761"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:2342"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:22244"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:40553"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:456216"/>
+ <rdf:li rdf:resource="http://identifiers.org/hmdb/HMDB01341"/>
+ <rdf:li rdf:resource="http://identifiers.org/kegg.compound/C00008"/>
+ <rdf:li rdf:resource="http://identifiers.org/kegg.glycan/G11113"/>
+ <rdf:li rdf:resource="http://identifiers.org/pubchem.substance/3310"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_190072"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_481002"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_211606"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_429160"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_29370"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_196180"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_113581"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_113582"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_114564"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_114565"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_429153"/>
+ <rdf:li rdf:resource="http://identifiers.org/seed.compound/cpd00008"/>
+ <rdf:li rdf:resource="http://identifiers.org/unipathway.compound/UPC00008"/>
+ </rdf:Bag>
+ </bqbiol:is>
+ </rdf:Description>
+ </rdf:RDF>
+ </sbml:annotation>
+ </species>
+ <species boundaryCondition="false" constant="false" hasOnlySubstanceUnits="false" id="M_atp_c" name="ATP" metaid="M_atp_c" compartment="c" fbc:chemicalFormula="C10H12N5O13P3">
+ <sbml:annotation xmlns:sbml="http://www.sbml.org/sbml/level3/version1/core">
+ <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
+ <rdf:Description rdf:about="#M_atp_c">
+ <bqbiol:is xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
+ <rdf:Bag>
+ <rdf:li rdf:resource="http://identifiers.org/bigg.metabolite/atp"/>
+ <rdf:li rdf:resource="http://identifiers.org/biocyc/ATP"/>
+ <rdf:li rdf:resource="http://identifiers.org/cas/56-65-5"/>
+ <rdf:li rdf:resource="http://identifiers.org/cas/56-65-5"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:40938"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:15422"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:57299"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:13236"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:10789"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:30616"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:22249"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:10841"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:2359"/>
+ <rdf:li rdf:resource="http://identifiers.org/hmdb/HMDB00538"/>
+ <rdf:li rdf:resource="http://identifiers.org/kegg.compound/C00002"/>
+ <rdf:li rdf:resource="http://identifiers.org/kegg.drug/D08646"/>
+ <rdf:li rdf:resource="http://identifiers.org/pubchem.substance/3304"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_190078"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_113592"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_113593"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_114570"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_29358"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_389573"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_139836"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_211579"/>
+ <rdf:li rdf:resource="http://identifiers.org/seed.compound/cpd00002"/>
+ <rdf:li rdf:resource="http://identifiers.org/unipathway.compound/UPC00002"/>
+ </rdf:Bag>
+ </bqbiol:is>
+ </rdf:Description>
+ </rdf:RDF>
+ </sbml:annotation>
+ </species>
+ <species boundaryCondition="false" constant="false" hasOnlySubstanceUnits="false" id="M_dhap_c" name="Dihydroxyacetone phosphate" metaid="M_dhap_c" compartment="c" fbc:chemicalFormula="C3H5O6P">
+ <sbml:annotation xmlns:sbml="http://www.sbml.org/sbml/level3/version1/core">
+ <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
+ <rdf:Description rdf:about="#M_dhap_c">
+ <bqbiol:is xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
+ <rdf:Bag>
+ <rdf:li rdf:resource="http://identifiers.org/bigg.metabolite/dhap"/>
+ <rdf:li rdf:resource="http://identifiers.org/biocyc/DIHYDROXY-ACETONE-PHOSPHATE"/>
+ <rdf:li rdf:resource="http://identifiers.org/cas/57-04-5"/>
+ <rdf:li rdf:resource="http://identifiers.org/cas/57-04-5"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:14341"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:57642"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:14342"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:16108"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:5454"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:24355"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:39571"/>
+ <rdf:li rdf:resource="http://identifiers.org/hmdb/HMDB01473"/>
+ <rdf:li rdf:resource="http://identifiers.org/hmdb/HMDB11735"/>
+ <rdf:li rdf:resource="http://identifiers.org/kegg.compound/C00111"/>
+ <rdf:li rdf:resource="http://identifiers.org/pubchem.substance/3411"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_188451"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_75970"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_390404"/>
+ <rdf:li rdf:resource="http://identifiers.org/seed.compound/cpd00095"/>
+ <rdf:li rdf:resource="http://identifiers.org/unipathway.compound/UPC00111"/>
+ </rdf:Bag>
+ </bqbiol:is>
+ </rdf:Description>
+ </rdf:RDF>
+ </sbml:annotation>
+ </species>
+ <species boundaryCondition="false" constant="false" hasOnlySubstanceUnits="false" id="M_f6p_c" name="D-Fructose 6-phosphate" metaid="M_f6p_c" compartment="c" fbc:chemicalFormula="C6H11O9P">
+ <sbml:annotation xmlns:sbml="http://www.sbml.org/sbml/level3/version1/core">
+ <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
+ <rdf:Description rdf:about="#M_f6p_c">
+ <bqbiol:is xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
+ <rdf:Bag>
+ <rdf:li rdf:resource="http://identifiers.org/bigg.metabolite/f6p"/>
+ <rdf:li rdf:resource="http://identifiers.org/biocyc/FRUCTOSE-6P"/>
+ <rdf:li rdf:resource="http://identifiers.org/cas/643-13-0"/>
+ <rdf:li rdf:resource="http://identifiers.org/cas/643-13-0"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:57634"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:12352"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:45804"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:61527"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:61553"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:10375"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:16084"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:42378"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:22768"/>
+ <rdf:li rdf:resource="http://identifiers.org/hmdb/HMDB03971"/>
+ <rdf:li rdf:resource="http://identifiers.org/kegg.compound/C05345"/>
+ <rdf:li rdf:resource="http://identifiers.org/kegg.compound/C00085"/>
+ <rdf:li rdf:resource="http://identifiers.org/pubchem.substance/3385"/>
+ <rdf:li rdf:resource="http://identifiers.org/seed.compound/cpd00072"/>
+ <rdf:li rdf:resource="http://identifiers.org/unipathway.compound/UPC05345"/>
+ <rdf:li rdf:resource="http://identifiers.org/unipathway.compound/UPC00085"/>
+ </rdf:Bag>
+ </bqbiol:is>
+ </rdf:Description>
+ </rdf:RDF>
+ </sbml:annotation>
+ </species>
+ <species boundaryCondition="false" constant="false" hasOnlySubstanceUnits="false" id="M_fdp_c" name="D-Fructose 1,6-bisphosphate" metaid="M_fdp_c" compartment="c" fbc:chemicalFormula="C6H10O12P2">
+ <sbml:annotation xmlns:sbml="http://www.sbml.org/sbml/level3/version1/core">
+ <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
+ <rdf:Description rdf:about="#M_fdp_c">
+ <bqbiol:is xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
+ <rdf:Bag>
+ <rdf:li rdf:resource="http://identifiers.org/bigg.metabolite/fdp"/>
+ <rdf:li rdf:resource="http://identifiers.org/biocyc/FRUCTOSE-16-DIPHOSPHATE"/>
+ <rdf:li rdf:resource="http://identifiers.org/cas/488-69-7"/>
+ <rdf:li rdf:resource="http://identifiers.org/cas/488-69-7"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:32968"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:49299"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:42553"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:32966"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:37736"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:28013"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:32967"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:41014"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:22767"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:10374"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:40595"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:40591"/>
+ <rdf:li rdf:resource="http://identifiers.org/kegg.compound/C05378"/>
+ <rdf:li rdf:resource="http://identifiers.org/kegg.compound/C00354"/>
+ <rdf:li rdf:resource="http://identifiers.org/pubchem.substance/3647"/>
+ <rdf:li rdf:resource="http://identifiers.org/seed.compound/cpd00290"/>
+ <rdf:li rdf:resource="http://identifiers.org/unipathway.compound/UPC00354"/>
+ </rdf:Bag>
+ </bqbiol:is>
+ </rdf:Description>
+ </rdf:RDF>
+ </sbml:annotation>
+ </species>
+ <species boundaryCondition="false" constant="false" hasOnlySubstanceUnits="false" id="M_g3p_c" name="Glyceraldehyde 3-phosphate" metaid="M_g3p_c" compartment="c" fbc:chemicalFormula="C3H5O6P">
+ <sbml:annotation xmlns:sbml="http://www.sbml.org/sbml/level3/version1/core">
+ <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
+ <rdf:Description rdf:about="#M_g3p_c">
+ <bqbiol:is xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
+ <rdf:Bag>
+ <rdf:li rdf:resource="http://identifiers.org/bigg.metabolite/g3p"/>
+ <rdf:li rdf:resource="http://identifiers.org/cas/142-10-9"/>
+ <rdf:li rdf:resource="http://identifiers.org/cas/142-10-9"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:17138"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:14333"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:5446"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:58027"/>
+ <rdf:li rdf:resource="http://identifiers.org/hmdb/HMDB01112"/>
+ <rdf:li rdf:resource="http://identifiers.org/kegg.compound/C00661"/>
+ <rdf:li rdf:resource="http://identifiers.org/kegg.compound/C00118"/>
+ <rdf:li rdf:resource="http://identifiers.org/pubchem.substance/3930"/>
+ <rdf:li rdf:resource="http://identifiers.org/seed.compound/cpd00102"/>
+ <rdf:li rdf:resource="http://identifiers.org/unipathway.compound/UPC00661"/>
+ <rdf:li rdf:resource="http://identifiers.org/unipathway.compound/UPC00118"/>
+ </rdf:Bag>
+ </bqbiol:is>
+ </rdf:Description>
+ </rdf:RDF>
+ </sbml:annotation>
+ </species>
+ <species boundaryCondition="false" constant="false" hasOnlySubstanceUnits="false" id="M_g6p_c" name="D-Glucose 6-phosphate" metaid="M_g6p_c" compartment="c" fbc:chemicalFormula="C6H11O9P">
+ <sbml:annotation xmlns:sbml="http://www.sbml.org/sbml/level3/version1/core">
+ <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
+ <rdf:Description rdf:about="#M_g6p_c">
+ <bqbiol:is xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
+ <rdf:Bag>
+ <rdf:li rdf:resource="http://identifiers.org/bigg.metabolite/g6p"/>
+ <rdf:li rdf:resource="http://identifiers.org/biocyc/D-glucose-6-phosphate"/>
+ <rdf:li rdf:resource="http://identifiers.org/biocyc/GLC-6-P"/>
+ <rdf:li rdf:resource="http://identifiers.org/cas/56-73-5"/>
+ <rdf:li rdf:resource="http://identifiers.org/cas/56-73-5"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:10399"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:22797"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:41041"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:17719"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:4170"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:61548"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:58247"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:12375"/>
+ <rdf:li rdf:resource="http://identifiers.org/hmdb/HMDB03498"/>
+ <rdf:li rdf:resource="http://identifiers.org/hmdb/HMDB06793"/>
+ <rdf:li rdf:resource="http://identifiers.org/hmdb/HMDB01401"/>
+ <rdf:li rdf:resource="http://identifiers.org/hmdb/HMDB01549"/>
+ <rdf:li rdf:resource="http://identifiers.org/kegg.compound/C00092"/>
+ <rdf:li rdf:resource="http://identifiers.org/kegg.compound/C01172"/>
+ <rdf:li rdf:resource="http://identifiers.org/pubchem.substance/3392"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_1629756"/>
+ <rdf:li rdf:resource="http://identifiers.org/seed.compound/cpd00079"/>
+ <rdf:li rdf:resource="http://identifiers.org/unipathway.compound/UPC00092"/>
+ </rdf:Bag>
+ </bqbiol:is>
+ </rdf:Description>
+ </rdf:RDF>
+ </sbml:annotation>
+ </species>
+ <species boundaryCondition="false" constant="false" hasOnlySubstanceUnits="false" id="M_glc__D_e" name="D-Glucose" metaid="M_glc__D_e" compartment="e" fbc:chemicalFormula="C6H12O6">
+ <sbml:annotation xmlns:sbml="http://www.sbml.org/sbml/level3/version1/core">
+ <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
+ <rdf:Description rdf:about="#M_glc__D_e">
+ <bqbiol:is xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
+ <rdf:Bag>
+ <rdf:li rdf:resource="http://identifiers.org/bigg.metabolite/glc__D"/>
+ <rdf:li rdf:resource="http://identifiers.org/cas/50-99-7"/>
+ <rdf:li rdf:resource="http://identifiers.org/cas/50-99-7"/>
+ <rdf:li rdf:resource="http://identifiers.org/kegg.compound/C00031"/>
+ <rdf:li rdf:resource="http://identifiers.org/pubchem.substance/3333"/>
+ </rdf:Bag>
+ </bqbiol:is>
+ </rdf:Description>
+ </rdf:RDF>
+ </sbml:annotation>
+ </species>
+ <species boundaryCondition="false" constant="false" hasOnlySubstanceUnits="false" id="M_h2o_c" name="H2O" metaid="M_h2o_c" compartment="c" fbc:chemicalFormula="H2O">
+ <sbml:annotation xmlns:sbml="http://www.sbml.org/sbml/level3/version1/core">
+ <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
+ <rdf:Description rdf:about="#M_h2o_c">
+ <bqbiol:is xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
+ <rdf:Bag>
+ <rdf:li rdf:resource="http://identifiers.org/bigg.metabolite/h2o"/>
+ <rdf:li rdf:resource="http://identifiers.org/biocyc/WATER"/>
+ <rdf:li rdf:resource="http://identifiers.org/biocyc/OH"/>
+ <rdf:li rdf:resource="http://identifiers.org/biocyc/OXONIUM"/>
+ <rdf:li rdf:resource="http://identifiers.org/cas/7732-18-5"/>
+ <rdf:li rdf:resource="http://identifiers.org/cas/7732-18-5"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:15377"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:13365"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:41979"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:16234"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:36385"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:42857"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:27313"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:44819"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:29373"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:10743"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:5594"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:29356"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:53442"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:29375"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:29374"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:13419"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:43228"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:44292"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:13352"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:41981"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:29412"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:42043"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:33811"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:33813"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:35511"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:5585"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:44641"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:44701"/>
+ <rdf:li rdf:resource="http://identifiers.org/hmdb/HMDB01039"/>
+ <rdf:li rdf:resource="http://identifiers.org/hmdb/HMDB02111"/>
+ <rdf:li rdf:resource="http://identifiers.org/kegg.compound/C01328"/>
+ <rdf:li rdf:resource="http://identifiers.org/kegg.compound/C00001"/>
+ <rdf:li rdf:resource="http://identifiers.org/kegg.compound/C18714"/>
+ <rdf:li rdf:resource="http://identifiers.org/kegg.compound/C18712"/>
+ <rdf:li rdf:resource="http://identifiers.org/kegg.drug/D00001"/>
+ <rdf:li rdf:resource="http://identifiers.org/kegg.drug/D06322"/>
+ <rdf:li rdf:resource="http://identifiers.org/kegg.drug/D03703"/>
+ <rdf:li rdf:resource="http://identifiers.org/pubchem.substance/3303"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_947593"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_189422"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_141343"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_113518"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_1605715"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_109276"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_113521"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_113519"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_2022884"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_351603"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_29356"/>
+ <rdf:li rdf:resource="http://identifiers.org/seed.compound/cpd15275"/>
+ <rdf:li rdf:resource="http://identifiers.org/seed.compound/cpd00001"/>
+ <rdf:li rdf:resource="http://identifiers.org/unipathway.compound/UPC00001"/>
+ <rdf:li rdf:resource="http://identifiers.org/unipathway.compound/UPC01328"/>
+ </rdf:Bag>
+ </bqbiol:is>
+ </rdf:Description>
+ </rdf:RDF>
+ </sbml:annotation>
+ </species>
+ <species boundaryCondition="false" constant="false" hasOnlySubstanceUnits="false" id="M_h2o_e" name="H2O" metaid="M_h2o_e" compartment="e" fbc:chemicalFormula="H2O">
+ <sbml:annotation xmlns:sbml="http://www.sbml.org/sbml/level3/version1/core">
+ <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
+ <rdf:Description rdf:about="#M_h2o_e">
+ <bqbiol:is xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
+ <rdf:Bag>
+ <rdf:li rdf:resource="http://identifiers.org/bigg.metabolite/h2o"/>
+ <rdf:li rdf:resource="http://identifiers.org/biocyc/WATER"/>
+ <rdf:li rdf:resource="http://identifiers.org/biocyc/OH"/>
+ <rdf:li rdf:resource="http://identifiers.org/biocyc/OXONIUM"/>
+ <rdf:li rdf:resource="http://identifiers.org/cas/7732-18-5"/>
+ <rdf:li rdf:resource="http://identifiers.org/cas/7732-18-5"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:15377"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:13365"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:41979"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:16234"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:36385"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:42857"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:27313"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:44819"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:29373"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:10743"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:5594"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:29356"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:53442"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:29375"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:29374"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:13419"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:43228"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:44292"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:13352"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:41981"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:29412"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:42043"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:33811"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:33813"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:35511"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:5585"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:44641"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:44701"/>
+ <rdf:li rdf:resource="http://identifiers.org/hmdb/HMDB01039"/>
+ <rdf:li rdf:resource="http://identifiers.org/hmdb/HMDB02111"/>
+ <rdf:li rdf:resource="http://identifiers.org/kegg.compound/C01328"/>
+ <rdf:li rdf:resource="http://identifiers.org/kegg.compound/C00001"/>
+ <rdf:li rdf:resource="http://identifiers.org/kegg.compound/C18714"/>
+ <rdf:li rdf:resource="http://identifiers.org/kegg.compound/C18712"/>
+ <rdf:li rdf:resource="http://identifiers.org/kegg.drug/D00001"/>
+ <rdf:li rdf:resource="http://identifiers.org/kegg.drug/D06322"/>
+ <rdf:li rdf:resource="http://identifiers.org/kegg.drug/D03703"/>
+ <rdf:li rdf:resource="http://identifiers.org/pubchem.substance/3303"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_947593"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_189422"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_141343"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_113518"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_1605715"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_109276"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_113521"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_113519"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_2022884"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_351603"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_29356"/>
+ <rdf:li rdf:resource="http://identifiers.org/seed.compound/cpd15275"/>
+ <rdf:li rdf:resource="http://identifiers.org/seed.compound/cpd00001"/>
+ <rdf:li rdf:resource="http://identifiers.org/unipathway.compound/UPC00001"/>
+ <rdf:li rdf:resource="http://identifiers.org/unipathway.compound/UPC01328"/>
+ </rdf:Bag>
+ </bqbiol:is>
+ </rdf:Description>
+ </rdf:RDF>
+ </sbml:annotation>
+ </species>
+ <species boundaryCondition="false" constant="false" hasOnlySubstanceUnits="false" id="M_h_c" name="H+" metaid="M_h_c" compartment="c" fbc:chemicalFormula="H">
+ <sbml:annotation xmlns:sbml="http://www.sbml.org/sbml/level3/version1/core">
+ <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
+ <rdf:Description rdf:about="#M_h_c">
+ <bqbiol:is xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
+ <rdf:Bag>
+ <rdf:li rdf:resource="http://identifiers.org/bigg.metabolite/h"/>
+ <rdf:li rdf:resource="http://identifiers.org/biocyc/PROTON"/>
+ <rdf:li rdf:resource="http://identifiers.org/cas/12408-02-5"/>
+ <rdf:li rdf:resource="http://identifiers.org/cas/12408-02-5"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:24636"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:15378"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:10744"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:13357"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:5584"/>
+ <rdf:li rdf:resource="http://identifiers.org/kegg.compound/C00080"/>
+ <rdf:li rdf:resource="http://identifiers.org/pubchem.substance/3380"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_194688"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_425978"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_193465"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_374900"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_74722"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_425999"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_428040"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_163953"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_372511"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_2000349"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_70106"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_1470067"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_113529"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_425969"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_428548"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_156540"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_1614597"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_351626"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_427899"/>
+ <rdf:li rdf:resource="http://identifiers.org/seed.compound/cpd00067"/>
+ <rdf:li rdf:resource="http://identifiers.org/unipathway.compound/UPC00080"/>
+ </rdf:Bag>
+ </bqbiol:is>
+ </rdf:Description>
+ </rdf:RDF>
+ </sbml:annotation>
+ </species>
+ <species boundaryCondition="false" constant="false" hasOnlySubstanceUnits="false" id="M_h_e" name="H+" metaid="M_h_e" compartment="e" fbc:chemicalFormula="H">
+ <sbml:annotation xmlns:sbml="http://www.sbml.org/sbml/level3/version1/core">
+ <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
+ <rdf:Description rdf:about="#M_h_e">
+ <bqbiol:is xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
+ <rdf:Bag>
+ <rdf:li rdf:resource="http://identifiers.org/bigg.metabolite/h"/>
+ <rdf:li rdf:resource="http://identifiers.org/biocyc/PROTON"/>
+ <rdf:li rdf:resource="http://identifiers.org/cas/12408-02-5"/>
+ <rdf:li rdf:resource="http://identifiers.org/cas/12408-02-5"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:24636"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:15378"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:10744"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:13357"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:5584"/>
+ <rdf:li rdf:resource="http://identifiers.org/kegg.compound/C00080"/>
+ <rdf:li rdf:resource="http://identifiers.org/pubchem.substance/3380"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_194688"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_425978"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_193465"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_374900"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_74722"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_425999"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_428040"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_163953"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_372511"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_2000349"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_70106"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_1470067"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_113529"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_425969"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_428548"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_156540"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_1614597"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_351626"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_427899"/>
+ <rdf:li rdf:resource="http://identifiers.org/seed.compound/cpd00067"/>
+ <rdf:li rdf:resource="http://identifiers.org/unipathway.compound/UPC00080"/>
+ </rdf:Bag>
+ </bqbiol:is>
+ </rdf:Description>
+ </rdf:RDF>
+ </sbml:annotation>
+ </species>
+ <species boundaryCondition="false" constant="false" hasOnlySubstanceUnits="false" id="M_lac__D_c" name="D-Lactate" compartment="c" fbc:charge="-1" fbc:chemicalFormula="C3H5O3"/>
+ <species boundaryCondition="false" constant="false" hasOnlySubstanceUnits="false" id="M_lac__D_e" name="D-Lactate" compartment="e" fbc:charge="-1" fbc:chemicalFormula="C3H5O3"/>
+ <species boundaryCondition="false" constant="false" hasOnlySubstanceUnits="false" id="M_nad_c" name="Nicotinamide adenine dinucleotide" metaid="M_nad_c" compartment="c" fbc:chemicalFormula="C21H26N7O14P2">
+ <sbml:annotation xmlns:sbml="http://www.sbml.org/sbml/level3/version1/core">
+ <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
+ <rdf:Description rdf:about="#M_nad_c">
+ <bqbiol:is xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
+ <rdf:Bag>
+ <rdf:li rdf:resource="http://identifiers.org/bigg.metabolite/nad"/>
+ <rdf:li rdf:resource="http://identifiers.org/biocyc/NAD"/>
+ <rdf:li rdf:resource="http://identifiers.org/cas/53-84-9"/>
+ <rdf:li rdf:resource="http://identifiers.org/cas/53-84-9"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:21901"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:7422"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:44214"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:15846"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:13394"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:13393"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:44215"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:13389"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:57540"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:44281"/>
+ <rdf:li rdf:resource="http://identifiers.org/hmdb/HMDB00902"/>
+ <rdf:li rdf:resource="http://identifiers.org/kegg.compound/C00003"/>
+ <rdf:li rdf:resource="http://identifiers.org/kegg.drug/D00002"/>
+ <rdf:li rdf:resource="http://identifiers.org/pubchem.substance/3305"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_192307"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_29360"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_427523"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_194653"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_113526"/>
+ <rdf:li rdf:resource="http://identifiers.org/seed.compound/cpd00003"/>
+ <rdf:li rdf:resource="http://identifiers.org/unipathway.compound/UPC00003"/>
+ </rdf:Bag>
+ </bqbiol:is>
+ </rdf:Description>
+ </rdf:RDF>
+ </sbml:annotation>
+ </species>
+ <species boundaryCondition="false" constant="false" hasOnlySubstanceUnits="false" id="M_nadh_c" name="Nicotinamide adenine dinucleotide - reduced" metaid="M_nadh_c" compartment="c" fbc:chemicalFormula="C21H27N7O14P2">
+ <sbml:annotation xmlns:sbml="http://www.sbml.org/sbml/level3/version1/core">
+ <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
+ <rdf:Description rdf:about="#M_nadh_c">
+ <bqbiol:is xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
+ <rdf:Bag>
+ <rdf:li rdf:resource="http://identifiers.org/bigg.metabolite/nadh"/>
+ <rdf:li rdf:resource="http://identifiers.org/biocyc/NADH"/>
+ <rdf:li rdf:resource="http://identifiers.org/cas/58-68-4"/>
+ <rdf:li rdf:resource="http://identifiers.org/cas/58-68-4"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:13395"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:21902"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:16908"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:7423"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:44216"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:57945"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:13396"/>
+ <rdf:li rdf:resource="http://identifiers.org/hmdb/HMDB01487"/>
+ <rdf:li rdf:resource="http://identifiers.org/kegg.compound/C00004"/>
+ <rdf:li rdf:resource="http://identifiers.org/pubchem.substance/3306"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_192305"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_73473"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_194697"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_29362"/>
+ <rdf:li rdf:resource="http://identifiers.org/seed.compound/cpd00004"/>
+ <rdf:li rdf:resource="http://identifiers.org/unipathway.compound/UPC00004"/>
+ </rdf:Bag>
+ </bqbiol:is>
+ </rdf:Description>
+ </rdf:RDF>
+ </sbml:annotation>
+ </species>
+ <species boundaryCondition="false" constant="false" hasOnlySubstanceUnits="false" id="M_pep_c" name="Phosphoenolpyruvate" metaid="M_pep_c" compartment="c" fbc:chemicalFormula="C3H2O6P">
+ <sbml:annotation xmlns:sbml="http://www.sbml.org/sbml/level3/version1/core">
+ <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
+ <rdf:Description rdf:about="#M_pep_c">
+ <bqbiol:is xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
+ <rdf:Bag>
+ <rdf:li rdf:resource="http://identifiers.org/bigg.metabolite/pep"/>
+ <rdf:li rdf:resource="http://identifiers.org/biocyc/PHOSPHO-ENOL-PYRUVATE"/>
+ <rdf:li rdf:resource="http://identifiers.org/cas/138-08-9"/>
+ <rdf:li rdf:resource="http://identifiers.org/cas/138-08-9"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:44897"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:44894"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:14812"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:8147"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:26055"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:26054"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:58702"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:18021"/>
+ <rdf:li rdf:resource="http://identifiers.org/hmdb/HMDB00263"/>
+ <rdf:li rdf:resource="http://identifiers.org/kegg.compound/C00074"/>
+ <rdf:li rdf:resource="http://identifiers.org/pubchem.substance/3374"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_29492"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_372364"/>
+ <rdf:li rdf:resource="http://identifiers.org/seed.compound/cpd00061"/>
+ <rdf:li rdf:resource="http://identifiers.org/unipathway.compound/UPC00074"/>
+ </rdf:Bag>
+ </bqbiol:is>
+ </rdf:Description>
+ </rdf:RDF>
+ </sbml:annotation>
+ </species>
+ <species boundaryCondition="false" constant="false" hasOnlySubstanceUnits="false" id="M_pi_c" name="Phosphate" metaid="M_pi_c" compartment="c" fbc:chemicalFormula="HO4P">
+ <sbml:annotation xmlns:sbml="http://www.sbml.org/sbml/level3/version1/core">
+ <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
+ <rdf:Description rdf:about="#M_pi_c">
+ <bqbiol:is xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
+ <rdf:Bag>
+ <rdf:li rdf:resource="http://identifiers.org/bigg.metabolite/pi"/>
+ <rdf:li rdf:resource="http://identifiers.org/biocyc/Pi"/>
+ <rdf:li rdf:resource="http://identifiers.org/biocyc/PHOSPHATE-GROUP"/>
+ <rdf:li rdf:resource="http://identifiers.org/biocyc/CPD0-1421"/>
+ <rdf:li rdf:resource="http://identifiers.org/cas/14265-44-2"/>
+ <rdf:li rdf:resource="http://identifiers.org/cas/14265-44-2"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:37583"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:7793"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:37585"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:34683"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:14791"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:34855"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:29137"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:29139"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:63036"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:26020"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:39739"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:32597"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:32596"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:43474"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:63051"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:43470"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:9679"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:35433"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:4496"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:45024"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:18367"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:26078"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:39745"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:24838"/>
+ <rdf:li rdf:resource="http://identifiers.org/hmdb/HMDB02142"/>
+ <rdf:li rdf:resource="http://identifiers.org/kegg.compound/C13556"/>
+ <rdf:li rdf:resource="http://identifiers.org/kegg.compound/C13558"/>
+ <rdf:li rdf:resource="http://identifiers.org/kegg.compound/C00009"/>
+ <rdf:li rdf:resource="http://identifiers.org/kegg.drug/D05467"/>
+ <rdf:li rdf:resource="http://identifiers.org/pubchem.substance/3311"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_947590"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_109277"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_113548"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_2255331"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_29372"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_113550"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_113551"/>
+ <rdf:li rdf:resource="http://identifiers.org/seed.compound/cpd09464"/>
+ <rdf:li rdf:resource="http://identifiers.org/seed.compound/cpd09463"/>
+ <rdf:li rdf:resource="http://identifiers.org/seed.compound/cpd00009"/>
+ <rdf:li rdf:resource="http://identifiers.org/unipathway.compound/UPC00009"/>
+ </rdf:Bag>
+ </bqbiol:is>
+ </rdf:Description>
+ </rdf:RDF>
+ </sbml:annotation>
+ </species>
+ <species boundaryCondition="false" constant="false" hasOnlySubstanceUnits="false" id="M_pi_e" name="Phosphate" metaid="M_pi_e" compartment="e" fbc:chemicalFormula="HO4P">
+ <sbml:annotation xmlns:sbml="http://www.sbml.org/sbml/level3/version1/core">
+ <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
+ <rdf:Description rdf:about="#M_pi_e">
+ <bqbiol:is xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
+ <rdf:Bag>
+ <rdf:li rdf:resource="http://identifiers.org/bigg.metabolite/pi"/>
+ <rdf:li rdf:resource="http://identifiers.org/biocyc/Pi"/>
+ <rdf:li rdf:resource="http://identifiers.org/biocyc/PHOSPHATE-GROUP"/>
+ <rdf:li rdf:resource="http://identifiers.org/biocyc/CPD0-1421"/>
+ <rdf:li rdf:resource="http://identifiers.org/cas/14265-44-2"/>
+ <rdf:li rdf:resource="http://identifiers.org/cas/14265-44-2"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:37583"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:7793"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:37585"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:34683"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:14791"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:34855"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:29137"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:29139"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:63036"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:26020"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:39739"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:32597"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:32596"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:43474"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:63051"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:43470"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:9679"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:35433"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:4496"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:45024"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:18367"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:26078"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:39745"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:24838"/>
+ <rdf:li rdf:resource="http://identifiers.org/hmdb/HMDB02142"/>
+ <rdf:li rdf:resource="http://identifiers.org/kegg.compound/C13556"/>
+ <rdf:li rdf:resource="http://identifiers.org/kegg.compound/C13558"/>
+ <rdf:li rdf:resource="http://identifiers.org/kegg.compound/C00009"/>
+ <rdf:li rdf:resource="http://identifiers.org/kegg.drug/D05467"/>
+ <rdf:li rdf:resource="http://identifiers.org/pubchem.substance/3311"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_947590"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_109277"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_113548"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_2255331"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_29372"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_113550"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_113551"/>
+ <rdf:li rdf:resource="http://identifiers.org/seed.compound/cpd09464"/>
+ <rdf:li rdf:resource="http://identifiers.org/seed.compound/cpd09463"/>
+ <rdf:li rdf:resource="http://identifiers.org/seed.compound/cpd00009"/>
+ <rdf:li rdf:resource="http://identifiers.org/unipathway.compound/UPC00009"/>
+ </rdf:Bag>
+ </bqbiol:is>
+ </rdf:Description>
+ </rdf:RDF>
+ </sbml:annotation>
+ </species>
+ <species boundaryCondition="false" constant="false" hasOnlySubstanceUnits="false" id="M_pyr_c" name="Pyruvate" metaid="M_pyr_c" compartment="c" fbc:chemicalFormula="C3H3O3">
+ <sbml:annotation xmlns:sbml="http://www.sbml.org/sbml/level3/version1/core">
+ <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
+ <rdf:Description rdf:about="#M_pyr_c">
+ <bqbiol:is xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
+ <rdf:Bag>
+ <rdf:li rdf:resource="http://identifiers.org/bigg.metabolite/pyr"/>
+ <rdf:li rdf:resource="http://identifiers.org/biocyc/PYRUVATE"/>
+ <rdf:li rdf:resource="http://identifiers.org/cas/127-17-3"/>
+ <rdf:li rdf:resource="http://identifiers.org/cas/127-17-3"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:15361"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:14987"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:8685"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:32816"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:45253"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:26466"/>
+ <rdf:li rdf:resource="http://identifiers.org/chebi/CHEBI:26462"/>
+ <rdf:li rdf:resource="http://identifiers.org/hmdb/HMDB00243"/>
+ <rdf:li rdf:resource="http://identifiers.org/kegg.compound/C00022"/>
+ <rdf:li rdf:resource="http://identifiers.org/lipidmaps/LMFA01060077"/>
+ <rdf:li rdf:resource="http://identifiers.org/pubchem.substance/3324"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_113557"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_389680"/>
+ <rdf:li rdf:resource="http://identifiers.org/reactome/REACT_29398"/>
+ <rdf:li rdf:resource="http://identifiers.org/seed.compound/cpd00020"/>
+ <rdf:li rdf:resource="http://identifiers.org/unipathway.compound/UPC00022"/>
+ </rdf:Bag>
+ </bqbiol:is>
+ </rdf:Description>
+ </rdf:RDF>
+ </sbml:annotation>
+ </species>
</listOfSpecies>
<fbc:listOfGeneProducts>
- <fbc:geneProduct fbc:id="G_b2779" fbc:label="b2779" fbc:name="eno" />
- <fbc:geneProduct fbc:id="G_b1773" fbc:label="b1773" fbc:name="ydjI" />
- <fbc:geneProduct fbc:id="G_b2097" fbc:label="b2097" fbc:name="fbaB" />
- <fbc:geneProduct fbc:id="G_b2925" fbc:label="b2925" fbc:name="fbaA" />
- <fbc:geneProduct fbc:id="G_b1779" fbc:label="b1779" fbc:name="gapA" />
- <fbc:geneProduct fbc:id="G_b2415" fbc:label="b2415" fbc:name="ptsH" />
- <fbc:geneProduct fbc:id="G_b1819" fbc:label="b1819" fbc:name="manZ" />
- <fbc:geneProduct fbc:id="G_b1818" fbc:label="b1818" fbc:name="manY" />
- <fbc:geneProduct fbc:id="G_b1621" fbc:label="b1621" fbc:name="malX" />
- <fbc:geneProduct fbc:id="G_b2417" fbc:label="b2417" fbc:name="crr" />
- <fbc:geneProduct fbc:id="G_b1101" fbc:label="b1101" fbc:name="ptsG" />
- <fbc:geneProduct fbc:id="G_b2416" fbc:label="b2416" fbc:name="ptsI" />
- <fbc:geneProduct fbc:id="G_b1817" fbc:label="b1817" fbc:name="manX" />
- <fbc:geneProduct fbc:id="G_b0875" fbc:label="b0875" fbc:name="aqpZ" />
- <fbc:geneProduct fbc:id="G_b3916" fbc:label="b3916" fbc:name="pfkA" />
- <fbc:geneProduct fbc:id="G_b1723" fbc:label="b1723" fbc:name="pfkB" />
- <fbc:geneProduct fbc:id="G_b4025" fbc:label="b4025" fbc:name="pgi" />
- <fbc:geneProduct fbc:id="G_b2926" fbc:label="b2926" fbc:name="pgk" />
- <fbc:geneProduct fbc:id="G_b3612" fbc:label="b3612" fbc:name="gpmM" />
- <fbc:geneProduct fbc:id="G_b4395" fbc:label="b4395" fbc:name="ytjC" />
- <fbc:geneProduct fbc:id="G_b0755" fbc:label="b0755" fbc:name="gpmA" />
- <fbc:geneProduct fbc:id="G_b3493" fbc:label="b3493" fbc:name="pitA" />
- <fbc:geneProduct fbc:id="G_b2987" fbc:label="b2987" fbc:name="pitB" />
- <fbc:geneProduct fbc:id="G_b1854" fbc:label="b1854" fbc:name="pykA" />
- <fbc:geneProduct fbc:id="G_b1676" fbc:label="b1676" fbc:name="pykF" />
- <fbc:geneProduct fbc:id="G_b3919" fbc:label="b3919" fbc:name="tpiA" />
- <fbc:geneProduct fbc:id="G_b1380" fbc:label="b1380" fbc:name="ldhA" />
- <fbc:geneProduct fbc:id="G_b2133" fbc:label="b2133" fbc:name="dld" />
- <fbc:geneProduct fbc:id="G_b2975" fbc:label="b2975" fbc:name="glcA" />
- <fbc:geneProduct fbc:id="G_b3603" fbc:label="b3603" fbc:name="lldP" />
+ <fbc:geneProduct fbc:id="G_b0755" fbc:label="b0755" fbc:name="gpmA"/>
+ <fbc:geneProduct fbc:id="G_b0875" fbc:label="b0875" fbc:name="aqpZ"/>
+ <fbc:geneProduct fbc:id="G_b1101" fbc:label="b1101" fbc:name="ptsG"/>
+ <fbc:geneProduct fbc:id="G_b1380" fbc:label="b1380" fbc:name="ldhA"/>
+ <fbc:geneProduct fbc:id="G_b1621" fbc:label="b1621" fbc:name="malX"/>
+ <fbc:geneProduct fbc:id="G_b1676" fbc:label="b1676" fbc:name="pykF" metaid="G_b1676">
+ <sbml:annotation xmlns:sbml="http://www.sbml.org/sbml/level3/version1/core">
+ <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
+ <rdf:Description rdf:about="#G_b1676">
+ <bqbiol:is xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
+ <rdf:Bag>
+ <rdf:li rdf:resource="http://identifiers.org/ncbigi/GI:1208453"/>
+ <rdf:li rdf:resource="http://identifiers.org/ncbigi/GI:1652654"/>
+ </rdf:Bag>
+ </bqbiol:is>
+ </rdf:Description>
+ </rdf:RDF>
+ </sbml:annotation>
+ </fbc:geneProduct>
+ <fbc:geneProduct fbc:id="G_b1723" fbc:label="b1723" fbc:name="pfkB"/>
+ <fbc:geneProduct fbc:id="G_b1773" fbc:label="b1773" fbc:name="ydjI"/>
+ <fbc:geneProduct fbc:id="G_b1779" fbc:label="b1779" fbc:name="gapA"/>
+ <fbc:geneProduct fbc:id="G_b1817" fbc:label="b1817" fbc:name="manX"/>
+ <fbc:geneProduct fbc:id="G_b1818" fbc:label="b1818" fbc:name="manY"/>
+ <fbc:geneProduct fbc:id="G_b1819" fbc:label="b1819" fbc:name="manZ"/>
+ <fbc:geneProduct fbc:id="G_b1854" fbc:label="b1854" fbc:name="pykA"/>
+ <fbc:geneProduct fbc:id="G_b2097" fbc:label="b2097" fbc:name="fbaB"/>
+ <fbc:geneProduct fbc:id="G_b2133" fbc:label="b2133" fbc:name="dld"/>
+ <fbc:geneProduct fbc:id="G_b2415" fbc:label="b2415" fbc:name="ptsH"/>
+ <fbc:geneProduct fbc:id="G_b2416" fbc:label="b2416" fbc:name="ptsI"/>
+ <fbc:geneProduct fbc:id="G_b2417" fbc:label="b2417" fbc:name="crr"/>
+ <fbc:geneProduct fbc:id="G_b2779" fbc:label="b2779" fbc:name="eno" metaid="G_b2779">
+ <sbml:annotation xmlns:sbml="http://www.sbml.org/sbml/level3/version1/core">
+ <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
+ <rdf:Description rdf:about="#G_b2779">
+ <bqbiol:is xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
+ <rdf:Bag>
+ <rdf:li rdf:resource="http://identifiers.org/ncbigi/GI:1653839"/>
+ </rdf:Bag>
+ </bqbiol:is>
+ </rdf:Description>
+ </rdf:RDF>
+ </sbml:annotation>
+ </fbc:geneProduct>
+ <fbc:geneProduct fbc:id="G_b2925" fbc:label="b2925" fbc:name="fbaA"/>
+ <fbc:geneProduct fbc:id="G_b2926" fbc:label="b2926" fbc:name="pgk" metaid="G_b2926">
+ <sbml:annotation xmlns:sbml="http://www.sbml.org/sbml/level3/version1/core">
+ <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
+ <rdf:Description rdf:about="#G_b2926">
+ <bqbiol:is xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
+ <rdf:Bag>
+ <rdf:li rdf:resource="http://identifiers.org/ncbigi/GI:1653609"/>
+ </rdf:Bag>
+ </bqbiol:is>
+ </rdf:Description>
+ </rdf:RDF>
+ </sbml:annotation>
+ </fbc:geneProduct>
+ <fbc:geneProduct fbc:id="G_b2975" fbc:label="b2975" fbc:name="glcA"/>
+ <fbc:geneProduct fbc:id="G_b2987" fbc:label="b2987" fbc:name="pitB"/>
+ <fbc:geneProduct fbc:id="G_b3493" fbc:label="b3493" fbc:name="pitA"/>
+ <fbc:geneProduct fbc:id="G_b3603" fbc:label="b3603" fbc:name="lldP"/>
+ <fbc:geneProduct fbc:id="G_b3612" fbc:label="b3612" fbc:name="gpmM"/>
+ <fbc:geneProduct fbc:id="G_b3916" fbc:label="b3916" fbc:name="pfkA" metaid="G_b3916">
+ <sbml:annotation xmlns:sbml="http://www.sbml.org/sbml/level3/version1/core">
+ <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
+ <rdf:Description rdf:about="#G_b3916">
+ <bqbiol:is xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
+ <rdf:Bag>
+ <rdf:li rdf:resource="http://identifiers.org/ncbigi/GI:1006614"/>
+ <rdf:li rdf:resource="http://identifiers.org/ncbigi/GI:1651919"/>
+ </rdf:Bag>
+ </bqbiol:is>
+ </rdf:Description>
+ </rdf:RDF>
+ </sbml:annotation>
+ </fbc:geneProduct>
+ <fbc:geneProduct fbc:id="G_b3919" fbc:label="b3919" fbc:name="tpiA"/>
+ <fbc:geneProduct fbc:id="G_b4025" fbc:label="b4025" fbc:name="pgi" metaid="G_b4025">
+ <sbml:annotation xmlns:sbml="http://www.sbml.org/sbml/level3/version1/core">
+ <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
+ <rdf:Description rdf:about="#G_b4025">
+ <bqbiol:is xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
+ <rdf:Bag>
+ <rdf:li rdf:resource="http://identifiers.org/ncbigi/GI:1653253"/>
+ </rdf:Bag>
+ </bqbiol:is>
+ </rdf:Description>
+ </rdf:RDF>
+ </sbml:annotation>
+ </fbc:geneProduct>
+ <fbc:geneProduct fbc:id="G_b4395" fbc:label="b4395" fbc:name="ytjC"/>
+ <fbc:geneProduct fbc:id="G_s0001" fbc:label="s0001" fbc:name="G_s0001"/>
</fbc:listOfGeneProducts>
<listOfReactions>
- <reaction fast="false" id="R_ATPM" name="ATP maintenance requirement" reversible="false" fbc:lowerFluxBound="R_ATPM_lower_bound" fbc:upperFluxBound="cobra_default_ub">
+ <reaction fast="false" id="R_ATPM" reversible="false" name="ATP maintenance requirement" metaid="R_ATPM" fbc:upperFluxBound="cobra_default_ub" fbc:lowerFluxBound="R_ATPM_lower_bound">
+ <sbml:annotation xmlns:sbml="http://www.sbml.org/sbml/level3/version1/core">
+ <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
+ <rdf:Description rdf:about="#R_ATPM">
+ <bqbiol:is xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
+ <rdf:Bag>
+ <rdf:li rdf:resource="http://identifiers.org/bigg.reaction/ATPM"/>
+ </rdf:Bag>
+ </bqbiol:is>
+ </rdf:Description>
+ </rdf:RDF>
+ </sbml:annotation>
<listOfReactants>
- <speciesReference constant="true" species="M_h2o_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_atp_c" stoichiometry="1" />
+ <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/>
+ <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
- <speciesReference constant="true" species="M_pi_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_h_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_adp_c" stoichiometry="1" />
+ <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/>
+ <speciesReference constant="true" species="M_h_c" stoichiometry="1"/>
+ <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/>
</listOfProducts>
</reaction>
- <reaction fast="false" id="R_ENO" name="enolase" reversible="true" fbc:lowerFluxBound="cobra_default_lb" fbc:upperFluxBound="cobra_default_ub">
+ <reaction fast="false" id="R_D_LACt2" reversible="true" name="D_LACt2" fbc:upperFluxBound="cobra_default_ub" fbc:lowerFluxBound="cobra_default_lb">
<listOfReactants>
- <speciesReference constant="true" species="M_2pg_c" stoichiometry="1" />
+ <speciesReference constant="true" species="M_h_e" stoichiometry="1"/>
+ <speciesReference constant="true" species="M_lac__D_e" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
- <speciesReference constant="true" species="M_h2o_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_pep_c" stoichiometry="1" />
+ <speciesReference constant="true" species="M_h_c" stoichiometry="1"/>
+ <speciesReference constant="true" species="M_lac__D_c" stoichiometry="1"/>
</listOfProducts>
<fbc:geneProductAssociation>
- <fbc:geneProductRef fbc:geneProduct="G_b2779" />
+ <fbc:or>
+ <fbc:geneProductRef fbc:geneProduct="G_b3603"/>
+ <fbc:geneProductRef fbc:geneProduct="G_b2975"/>
+ </fbc:or>
</fbc:geneProductAssociation>
</reaction>
- <reaction fast="false" id="R_EX_glc__D_e" name="D-Glucose exchange" reversible="true" fbc:lowerFluxBound="R_EX_glc__D_e_lower_bound" fbc:upperFluxBound="cobra_default_ub">
+ <reaction fast="false" id="R_ENO" reversible="true" name="enolase" metaid="R_ENO" fbc:upperFluxBound="cobra_default_ub" fbc:lowerFluxBound="cobra_default_lb">
+ <sbml:annotation xmlns:sbml="http://www.sbml.org/sbml/level3/version1/core">
+ <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
+ <rdf:Description rdf:about="#R_ENO">
+ <bqbiol:is xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
+ <rdf:Bag>
+ <rdf:li rdf:resource="http://identifiers.org/bigg.reaction/ENO"/>
+ </rdf:Bag>
+ </bqbiol:is>
+ </rdf:Description>
+ </rdf:RDF>
+ </sbml:annotation>
<listOfReactants>
- <speciesReference constant="true" species="M_glc__D_e" stoichiometry="1" />
+ <speciesReference constant="true" species="M_2pg_c" stoichiometry="1"/>
</listOfReactants>
+ <listOfProducts>
+ <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/>
+ <speciesReference constant="true" species="M_pep_c" stoichiometry="1"/>
+ </listOfProducts>
+ <fbc:geneProductAssociation>
+ <fbc:geneProductRef fbc:geneProduct="G_b2779"/>
+ </fbc:geneProductAssociation>
</reaction>
- <reaction fast="false" id="R_EX_h_e" name="H+ exchange" reversible="true" fbc:lowerFluxBound="cobra_default_lb" fbc:upperFluxBound="cobra_default_ub">
+ <reaction fast="false" id="R_EX_glc__D_e" reversible="true" name="D-Glucose exchange" metaid="R_EX_glc__D_e" fbc:upperFluxBound="cobra_default_ub" fbc:lowerFluxBound="R_EX_glc__D_e_lower_bound">
+ <sbml:annotation xmlns:sbml="http://www.sbml.org/sbml/level3/version1/core">
+ <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
+ <rdf:Description rdf:about="#R_EX_glc__D_e">
+ <bqbiol:is xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
+ <rdf:Bag>
+ <rdf:li rdf:resource="http://identifiers.org/bigg.reaction/glc"/>
+ </rdf:Bag>
+ </bqbiol:is>
+ </rdf:Description>
+ </rdf:RDF>
+ </sbml:annotation>
<listOfReactants>
- <speciesReference constant="true" species="M_h_e" stoichiometry="1" />
+ <speciesReference constant="true" species="M_glc__D_e" stoichiometry="1"/>
</listOfReactants>
</reaction>
- <reaction fast="false" id="R_FBA" name="fructose-bisphosphate aldolase" reversible="true" fbc:lowerFluxBound="cobra_default_lb" fbc:upperFluxBound="cobra_default_ub">
+ <reaction fast="false" id="R_EX_h_e" reversible="true" name="H+ exchange" metaid="R_EX_h_e" fbc:upperFluxBound="cobra_default_ub" fbc:lowerFluxBound="cobra_default_lb">
+ <sbml:annotation xmlns:sbml="http://www.sbml.org/sbml/level3/version1/core">
+ <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
+ <rdf:Description rdf:about="#R_EX_h_e">
+ <bqbiol:is xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
+ <rdf:Bag>
+ <rdf:li rdf:resource="http://identifiers.org/bigg.reaction/h"/>
+ </rdf:Bag>
+ </bqbiol:is>
+ </rdf:Description>
+ </rdf:RDF>
+ </sbml:annotation>
<listOfReactants>
- <speciesReference constant="true" species="M_fdp_c" stoichiometry="1" />
+ <speciesReference constant="true" species="M_h_e" stoichiometry="1"/>
+ </listOfReactants>
+ </reaction>
+ <reaction fast="false" id="R_EX_lac__D_e" reversible="false" name="D-lactate exchange" fbc:upperFluxBound="cobra_default_ub" fbc:lowerFluxBound="cobra_0_bound">
+ <listOfReactants>
+ <speciesReference constant="true" species="M_lac__D_e" stoichiometry="1"/>
+ </listOfReactants>
+ </reaction>
+ <reaction fast="false" id="R_FBA" reversible="true" name="fructose-bisphosphate aldolase" metaid="R_FBA" fbc:upperFluxBound="cobra_default_ub" fbc:lowerFluxBound="cobra_default_lb">
+ <sbml:annotation xmlns:sbml="http://www.sbml.org/sbml/level3/version1/core">
+ <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
+ <rdf:Description rdf:about="#R_FBA">
+ <bqbiol:is xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
+ <rdf:Bag>
+ <rdf:li rdf:resource="http://identifiers.org/bigg.reaction/FBA"/>
+ </rdf:Bag>
+ </bqbiol:is>
+ </rdf:Description>
+ </rdf:RDF>
+ </sbml:annotation>
+ <listOfReactants>
+ <speciesReference constant="true" species="M_fdp_c" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
- <speciesReference constant="true" species="M_dhap_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_g3p_c" stoichiometry="1" />
+ <speciesReference constant="true" species="M_dhap_c" stoichiometry="1"/>
+ <speciesReference constant="true" species="M_g3p_c" stoichiometry="1"/>
</listOfProducts>
<fbc:geneProductAssociation>
<fbc:or>
- <fbc:geneProductRef fbc:geneProduct="G_b2925" />
- <fbc:geneProductRef fbc:geneProduct="G_b1773" />
- <fbc:geneProductRef fbc:geneProduct="G_b2097" />
+ <fbc:geneProductRef fbc:geneProduct="G_b1773"/>
+ <fbc:geneProductRef fbc:geneProduct="G_b2097"/>
+ <fbc:geneProductRef fbc:geneProduct="G_b2925"/>
</fbc:or>
</fbc:geneProductAssociation>
</reaction>
- <reaction fast="false" id="R_GAPD" name="glyceraldehyde-3-phosphate dehydrogenase" reversible="true" fbc:lowerFluxBound="cobra_default_lb" fbc:upperFluxBound="cobra_default_ub">
+ <reaction fast="false" id="R_GAPD" reversible="true" name="glyceraldehyde-3-phosphate dehydrogenase" metaid="R_GAPD" fbc:upperFluxBound="cobra_default_ub" fbc:lowerFluxBound="cobra_default_lb">
+ <sbml:annotation xmlns:sbml="http://www.sbml.org/sbml/level3/version1/core">
+ <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
+ <rdf:Description rdf:about="#R_GAPD">
+ <bqbiol:is xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
+ <rdf:Bag>
+ <rdf:li rdf:resource="http://identifiers.org/bigg.reaction/GAPD"/>
+ </rdf:Bag>
+ </bqbiol:is>
+ </rdf:Description>
+ </rdf:RDF>
+ </sbml:annotation>
<listOfReactants>
- <speciesReference constant="true" species="M_pi_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_nad_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_g3p_c" stoichiometry="1" />
+ <speciesReference constant="true" species="M_g3p_c" stoichiometry="1"/>
+ <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/>
+ <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
- <speciesReference constant="true" species="M_13dpg_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_h_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_nadh_c" stoichiometry="1" />
+ <speciesReference constant="true" species="M_13dpg_c" stoichiometry="1"/>
+ <speciesReference constant="true" species="M_h_c" stoichiometry="1"/>
+ <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/>
</listOfProducts>
<fbc:geneProductAssociation>
- <fbc:geneProductRef fbc:geneProduct="G_b1779" />
+ <fbc:geneProductRef fbc:geneProduct="G_b1779"/>
</fbc:geneProductAssociation>
</reaction>
- <reaction fast="false" id="R_GLCpts" name="D-glucose transport via PEP:Pyr PTS" reversible="false" fbc:lowerFluxBound="cobra_0_bound" fbc:upperFluxBound="cobra_default_ub">
+ <reaction fast="false" id="R_GLCpts" reversible="false" name="D-glucose transport via PEP:Pyr PTS" metaid="R_GLCpts" fbc:upperFluxBound="cobra_default_ub" fbc:lowerFluxBound="cobra_0_bound">
+ <sbml:annotation xmlns:sbml="http://www.sbml.org/sbml/level3/version1/core">
+ <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
+ <rdf:Description rdf:about="#R_GLCpts">
+ <bqbiol:is xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
+ <rdf:Bag>
+ <rdf:li rdf:resource="http://identifiers.org/bigg.reaction/GLCpts"/>
+ </rdf:Bag>
+ </bqbiol:is>
+ </rdf:Description>
+ </rdf:RDF>
+ </sbml:annotation>
<listOfReactants>
- <speciesReference constant="true" species="M_pep_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_glc__D_e" stoichiometry="1" />
+ <speciesReference constant="true" species="M_glc__D_e" stoichiometry="1"/>
+ <speciesReference constant="true" species="M_pep_c" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
- <speciesReference constant="true" species="M_g6p_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_pyr_c" stoichiometry="1" />
+ <speciesReference constant="true" species="M_g6p_c" stoichiometry="1"/>
+ <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/>
</listOfProducts>
<fbc:geneProductAssociation>
<fbc:or>
<fbc:and>
- <fbc:geneProductRef fbc:geneProduct="G_b2417" />
- <fbc:geneProductRef fbc:geneProduct="G_b1621" />
- <fbc:geneProductRef fbc:geneProduct="G_b2415" />
- <fbc:geneProductRef fbc:geneProduct="G_b2416" />
+ <fbc:geneProductRef fbc:geneProduct="G_b2417"/>
+ <fbc:geneProductRef fbc:geneProduct="G_b1621"/>
+ <fbc:geneProductRef fbc:geneProduct="G_b2415"/>
+ <fbc:geneProductRef fbc:geneProduct="G_b2416"/>
</fbc:and>
<fbc:and>
- <fbc:geneProductRef fbc:geneProduct="G_b2417" />
- <fbc:geneProductRef fbc:geneProduct="G_b1101" />
- <fbc:geneProductRef fbc:geneProduct="G_b2415" />
- <fbc:geneProductRef fbc:geneProduct="G_b2416" />
+ <fbc:geneProductRef fbc:geneProduct="G_b2417"/>
+ <fbc:geneProductRef fbc:geneProduct="G_b1101"/>
+ <fbc:geneProductRef fbc:geneProduct="G_b2415"/>
+ <fbc:geneProductRef fbc:geneProduct="G_b2416"/>
</fbc:and>
<fbc:and>
- <fbc:geneProductRef fbc:geneProduct="G_b1817" />
- <fbc:geneProductRef fbc:geneProduct="G_b1818" />
- <fbc:geneProductRef fbc:geneProduct="G_b1819" />
- <fbc:geneProductRef fbc:geneProduct="G_b2415" />
- <fbc:geneProductRef fbc:geneProduct="G_b2416" />
+ <fbc:geneProductRef fbc:geneProduct="G_b1817"/>
+ <fbc:geneProductRef fbc:geneProduct="G_b1818"/>
+ <fbc:geneProductRef fbc:geneProduct="G_b1819"/>
+ <fbc:geneProductRef fbc:geneProduct="G_b2415"/>
+ <fbc:geneProductRef fbc:geneProduct="G_b2416"/>
</fbc:and>
</fbc:or>
</fbc:geneProductAssociation>
</reaction>
- <reaction fast="false" id="R_H2Ot" name="H2O transport via diffusion" reversible="true" fbc:lowerFluxBound="cobra_default_lb" fbc:upperFluxBound="cobra_default_ub">
+ <reaction fast="false" id="R_H2Ot" reversible="true" name="R H2O transport via - diffusion" metaid="R_H2Ot" fbc:upperFluxBound="cobra_default_ub" fbc:lowerFluxBound="cobra_default_lb">
+ <sbml:annotation xmlns:sbml="http://www.sbml.org/sbml/level3/version1/core">
+ <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
+ <rdf:Description rdf:about="#R_H2Ot">
+ <bqbiol:is xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
+ <rdf:Bag>
+ <rdf:li rdf:resource="http://identifiers.org/bigg.reaction/H2Ot"/>
+ </rdf:Bag>
+ </bqbiol:is>
+ </rdf:Description>
+ </rdf:RDF>
+ </sbml:annotation>
<listOfReactants>
- <speciesReference constant="true" species="M_h2o_e" stoichiometry="1" />
+ <speciesReference constant="true" species="M_h2o_e" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
- <speciesReference constant="true" species="M_h2o_c" stoichiometry="1" />
+ <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/>
</listOfProducts>
<fbc:geneProductAssociation>
- <fbc:geneProductRef fbc:geneProduct="G_b0875" />
+ <fbc:or>
+ <fbc:geneProductRef fbc:geneProduct="G_b0875"/>
+ <fbc:geneProductRef fbc:geneProduct="G_s0001"/>
+ </fbc:or>
</fbc:geneProductAssociation>
</reaction>
- <reaction fast="false" id="R_PFK" name="phosphofructokinase" reversible="false" fbc:lowerFluxBound="cobra_0_bound" fbc:upperFluxBound="cobra_default_ub">
+ <reaction fast="false" id="R_LDH_D" reversible="true" name="D-lactate dehydrogenase" fbc:upperFluxBound="cobra_default_ub" fbc:lowerFluxBound="cobra_default_lb">
<listOfReactants>
- <speciesReference constant="true" species="M_atp_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_f6p_c" stoichiometry="1" />
+ <speciesReference constant="true" species="M_lac__D_c" stoichiometry="1"/>
+ <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
- <speciesReference constant="true" species="M_h_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_adp_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_fdp_c" stoichiometry="1" />
+ <speciesReference constant="true" species="M_h_c" stoichiometry="1"/>
+ <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/>
+ <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/>
</listOfProducts>
<fbc:geneProductAssociation>
<fbc:or>
- <fbc:geneProductRef fbc:geneProduct="G_b3916" />
- <fbc:geneProductRef fbc:geneProduct="G_b1723" />
+ <fbc:geneProductRef fbc:geneProduct="G_b2133"/>
+ <fbc:geneProductRef fbc:geneProduct="G_b1380"/>
</fbc:or>
</fbc:geneProductAssociation>
</reaction>
- <reaction fast="false" id="R_PGI" name="glucose-6-phosphate isomerase" reversible="true" fbc:lowerFluxBound="cobra_default_lb" fbc:upperFluxBound="cobra_default_ub">
+ <reaction fast="false" id="R_PFK" reversible="false" name="phosphofructokinase" metaid="R_PFK" fbc:upperFluxBound="cobra_default_ub" fbc:lowerFluxBound="cobra_0_bound">
+ <sbml:annotation xmlns:sbml="http://www.sbml.org/sbml/level3/version1/core">
+ <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
+ <rdf:Description rdf:about="#R_PFK">
+ <bqbiol:is xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
+ <rdf:Bag>
+ <rdf:li rdf:resource="http://identifiers.org/bigg.reaction/PFK"/>
+ </rdf:Bag>
+ </bqbiol:is>
+ </rdf:Description>
+ </rdf:RDF>
+ </sbml:annotation>
<listOfReactants>
- <speciesReference constant="true" species="M_g6p_c" stoichiometry="1" />
+ <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/>
+ <speciesReference constant="true" species="M_f6p_c" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
- <speciesReference constant="true" species="M_f6p_c" stoichiometry="1" />
+ <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/>
+ <speciesReference constant="true" species="M_fdp_c" stoichiometry="1"/>
+ <speciesReference constant="true" species="M_h_c" stoichiometry="1"/>
</listOfProducts>
<fbc:geneProductAssociation>
- <fbc:geneProductRef fbc:geneProduct="G_b4025" />
+ <fbc:or>
+ <fbc:geneProductRef fbc:geneProduct="G_b3916"/>
+ <fbc:geneProductRef fbc:geneProduct="G_b1723"/>
+ </fbc:or>
</fbc:geneProductAssociation>
</reaction>
- <reaction fast="false" id="R_PGK" name="phosphoglycerate kinase" reversible="true" fbc:lowerFluxBound="cobra_default_lb" fbc:upperFluxBound="cobra_default_ub">
+ <reaction fast="false" id="R_PGI" reversible="true" name="glucose-6-phosphate isomerase" metaid="R_PGI" fbc:upperFluxBound="cobra_default_ub" fbc:lowerFluxBound="cobra_default_lb">
+ <sbml:annotation xmlns:sbml="http://www.sbml.org/sbml/level3/version1/core">
+ <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
+ <rdf:Description rdf:about="#R_PGI">
+ <bqbiol:is xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
+ <rdf:Bag>
+ <rdf:li rdf:resource="http://identifiers.org/bigg.reaction/PGI"/>
+ </rdf:Bag>
+ </bqbiol:is>
+ </rdf:Description>
+ </rdf:RDF>
+ </sbml:annotation>
<listOfReactants>
- <speciesReference constant="true" species="M_atp_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_3pg_c" stoichiometry="1" />
+ <speciesReference constant="true" species="M_g6p_c" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
- <speciesReference constant="true" species="M_13dpg_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_adp_c" stoichiometry="1" />
+ <speciesReference constant="true" species="M_f6p_c" stoichiometry="1"/>
</listOfProducts>
<fbc:geneProductAssociation>
- <fbc:geneProductRef fbc:geneProduct="G_b2926" />
+ <fbc:geneProductRef fbc:geneProduct="G_b4025"/>
</fbc:geneProductAssociation>
</reaction>
- <reaction fast="false" id="R_PGM" name="phosphoglycerate mutase" reversible="true" fbc:lowerFluxBound="cobra_default_lb" fbc:upperFluxBound="cobra_default_ub">
+ <reaction fast="false" id="R_PGK" reversible="true" name="phosphoglycerate kinase" metaid="R_PGK" fbc:upperFluxBound="cobra_default_ub" fbc:lowerFluxBound="cobra_default_lb">
+ <sbml:annotation xmlns:sbml="http://www.sbml.org/sbml/level3/version1/core">
+ <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
+ <rdf:Description rdf:about="#R_PGK">
+ <bqbiol:is xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
+ <rdf:Bag>
+ <rdf:li rdf:resource="http://identifiers.org/bigg.reaction/PGK"/>
+ </rdf:Bag>
+ </bqbiol:is>
+ </rdf:Description>
+ </rdf:RDF>
+ </sbml:annotation>
<listOfReactants>
- <speciesReference constant="true" species="M_2pg_c" stoichiometry="1" />
+ <speciesReference constant="true" species="M_3pg_c" stoichiometry="1"/>
+ <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
- <speciesReference constant="true" species="M_3pg_c" stoichiometry="1" />
+ <speciesReference constant="true" species="M_13dpg_c" stoichiometry="1"/>
+ <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/>
</listOfProducts>
<fbc:geneProductAssociation>
- <fbc:or>
- <fbc:geneProductRef fbc:geneProduct="G_b4395" />
- <fbc:geneProductRef fbc:geneProduct="G_b3612" />
- <fbc:geneProductRef fbc:geneProduct="G_b0755" />
- </fbc:or>
+ <fbc:geneProductRef fbc:geneProduct="G_b2926"/>
</fbc:geneProductAssociation>
</reaction>
- <reaction fast="false" id="R_PIt2r" name="phosphate reversible transport via symport" reversible="true" fbc:lowerFluxBound="cobra_default_lb" fbc:upperFluxBound="cobra_default_ub">
+ <reaction fast="false" id="R_PGM" reversible="true" name="phosphoglycerate mutase" metaid="R_PGM" fbc:upperFluxBound="cobra_default_ub" fbc:lowerFluxBound="cobra_default_lb">
+ <sbml:annotation xmlns:sbml="http://www.sbml.org/sbml/level3/version1/core">
+ <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
+ <rdf:Description rdf:about="#R_PGM">
+ <bqbiol:is xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
+ <rdf:Bag>
+ <rdf:li rdf:resource="http://identifiers.org/bigg.reaction/PGM"/>
+ </rdf:Bag>
+ </bqbiol:is>
+ </rdf:Description>
+ </rdf:RDF>
+ </sbml:annotation>
<listOfReactants>
- <speciesReference constant="true" species="M_h_e" stoichiometry="1" />
- <speciesReference constant="true" species="M_pi_e" stoichiometry="1" />
+ <speciesReference constant="true" species="M_2pg_c" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
- <speciesReference constant="true" species="M_pi_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_h_c" stoichiometry="1" />
+ <speciesReference constant="true" species="M_3pg_c" stoichiometry="1"/>
</listOfProducts>
<fbc:geneProductAssociation>
<fbc:or>
- <fbc:geneProductRef fbc:geneProduct="G_b2987" />
- <fbc:geneProductRef fbc:geneProduct="G_b3493" />
+ <fbc:geneProductRef fbc:geneProduct="G_b4395"/>
+ <fbc:geneProductRef fbc:geneProduct="G_b3612"/>
+ <fbc:geneProductRef fbc:geneProduct="G_b0755"/>
</fbc:or>
</fbc:geneProductAssociation>
</reaction>
- <reaction fast="false" id="R_PYK" name="pyruvate kinase" reversible="false" fbc:lowerFluxBound="cobra_0_bound" fbc:upperFluxBound="cobra_default_ub">
+ <reaction fast="false" id="R_PIt2r" reversible="true" name="R phosphate reversible transport via - symport" metaid="R_PIt2r" fbc:upperFluxBound="cobra_default_ub" fbc:lowerFluxBound="cobra_default_lb">
+ <sbml:annotation xmlns:sbml="http://www.sbml.org/sbml/level3/version1/core">
+ <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
+ <rdf:Description rdf:about="#R_PIt2r">
+ <bqbiol:is xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
+ <rdf:Bag>
+ <rdf:li rdf:resource="http://identifiers.org/bigg.reaction/PIt2r"/>
+ </rdf:Bag>
+ </bqbiol:is>
+ </rdf:Description>
+ </rdf:RDF>
+ </sbml:annotation>
<listOfReactants>
- <speciesReference constant="true" species="M_pep_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_h_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_adp_c" stoichiometry="1" />
+ <speciesReference constant="true" species="M_h_e" stoichiometry="1"/>
+ <speciesReference constant="true" species="M_pi_e" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
- <speciesReference constant="true" species="M_pyr_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_atp_c" stoichiometry="1" />
+ <speciesReference constant="true" species="M_h_c" stoichiometry="1"/>
+ <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/>
</listOfProducts>
<fbc:geneProductAssociation>
<fbc:or>
- <fbc:geneProductRef fbc:geneProduct="G_b1854" />
- <fbc:geneProductRef fbc:geneProduct="G_b1676" />
+ <fbc:geneProductRef fbc:geneProduct="G_b2987"/>
+ <fbc:geneProductRef fbc:geneProduct="G_b3493"/>
</fbc:or>
</fbc:geneProductAssociation>
</reaction>
- <reaction fast="false" id="R_TPI" name="triose-phosphate isomerase" reversible="true" fbc:lowerFluxBound="cobra_default_lb" fbc:upperFluxBound="cobra_default_ub">
+ <reaction fast="false" id="R_PYK" reversible="false" name="pyruvate kinase" metaid="R_PYK" fbc:upperFluxBound="cobra_default_ub" fbc:lowerFluxBound="cobra_0_bound">
+ <sbml:annotation xmlns:sbml="http://www.sbml.org/sbml/level3/version1/core">
+ <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
+ <rdf:Description rdf:about="#R_PYK">
+ <bqbiol:is xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
+ <rdf:Bag>
+ <rdf:li rdf:resource="http://identifiers.org/bigg.reaction/PYK"/>
+ </rdf:Bag>
+ </bqbiol:is>
+ </rdf:Description>
+ </rdf:RDF>
+ </sbml:annotation>
<listOfReactants>
- <speciesReference constant="true" species="M_dhap_c" stoichiometry="1" />
+ <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/>
+ <speciesReference constant="true" species="M_h_c" stoichiometry="1"/>
+ <speciesReference constant="true" species="M_pep_c" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
- <speciesReference constant="true" species="M_g3p_c" stoichiometry="1" />
- </listOfProducts>
- <fbc:geneProductAssociation>
- <fbc:geneProductRef fbc:geneProduct="G_b3919" />
- </fbc:geneProductAssociation>
- </reaction>
- <reaction fast="false" id="R_LDH_D" name="D-lactate dehydrogenase" reversible="true" fbc:lowerFluxBound="cobra_default_lb" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_nad_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_lac__D_c" stoichiometry="1" />
- </listOfReactants>
- <listOfProducts>
- <speciesReference constant="true" species="M_pyr_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_h_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_nadh_c" stoichiometry="1" />
+ <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/>
+ <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/>
</listOfProducts>
<fbc:geneProductAssociation>
<fbc:or>
- <fbc:geneProductRef fbc:geneProduct="G_b2133" />
- <fbc:geneProductRef fbc:geneProduct="G_b1380" />
+ <fbc:geneProductRef fbc:geneProduct="G_b1854"/>
+ <fbc:geneProductRef fbc:geneProduct="G_b1676"/>
</fbc:or>
</fbc:geneProductAssociation>
</reaction>
- <reaction fast="false" id="R_EX_lac__D_e" name="D-lactate exchange" reversible="false" fbc:lowerFluxBound="cobra_0_bound" fbc:upperFluxBound="cobra_default_ub">
+ <reaction fast="false" id="R_TPI" reversible="true" name="triose-phosphate isomerase" metaid="R_TPI" fbc:upperFluxBound="cobra_default_ub" fbc:lowerFluxBound="cobra_default_lb">
+ <sbml:annotation xmlns:sbml="http://www.sbml.org/sbml/level3/version1/core">
+ <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
+ <rdf:Description rdf:about="#R_TPI">
+ <bqbiol:is xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
+ <rdf:Bag>
+ <rdf:li rdf:resource="http://identifiers.org/bigg.reaction/TPI"/>
+ </rdf:Bag>
+ </bqbiol:is>
+ </rdf:Description>
+ </rdf:RDF>
+ </sbml:annotation>
<listOfReactants>
- <speciesReference constant="true" species="M_lac__D_e" stoichiometry="1" />
- </listOfReactants>
- </reaction>
- <reaction fast="false" id="R_D_LACt2" name="D_LACt2" reversible="true" fbc:lowerFluxBound="cobra_default_lb" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_lac__D_e" stoichiometry="1" />
- <speciesReference constant="true" species="M_h_e" stoichiometry="1" />
+ <speciesReference constant="true" species="M_dhap_c" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
- <speciesReference constant="true" species="M_h_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_lac__D_c" stoichiometry="1" />
+ <speciesReference constant="true" species="M_g3p_c" stoichiometry="1"/>
</listOfProducts>
<fbc:geneProductAssociation>
- <fbc:or>
- <fbc:geneProductRef fbc:geneProduct="G_b3603" />
- <fbc:geneProductRef fbc:geneProduct="G_b2975" />
- </fbc:or>
+ <fbc:geneProductRef fbc:geneProduct="G_b3919"/>
</fbc:geneProductAssociation>
</reaction>
</listOfReactions>
diff --git a/cobra/test/data/mini_fbc2.xml.bz2 b/cobra/test/data/mini_fbc2.xml.bz2
new file mode 100644
index 0000000..f4efa1b
Binary files /dev/null and b/cobra/test/data/mini_fbc2.xml.bz2 differ
diff --git a/cobra/test/data/mini_fbc2.xml.gz b/cobra/test/data/mini_fbc2.xml.gz
new file mode 100644
index 0000000..677cf08
Binary files /dev/null and b/cobra/test/data/mini_fbc2.xml.gz differ
diff --git a/cobra/test/data/salmonella_fbc.xml b/cobra/test/data/salmonella_fbc.xml
deleted file mode 100644
index 2116d02..0000000
--- a/cobra/test/data/salmonella_fbc.xml
+++ /dev/null
@@ -1,77257 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<sbml xmlns="http://www.sbml.org/sbml/level3/version1/core" xmlns:fbc="http://www.sbml.org/sbml/level3/version1/fbc/version1" level="3" version="1" fbc:required="false">
- <model id="Salmonella_consensus_build_1" substanceUnits="substance" timeUnits="dimensionless" volumeUnits="volume" areaUnits="area" lengthUnits="metre" extentUnits="substance">
- <annotation>
- <listOfGeneAssociations xmlns="http://www.sbml.org/sbml/level3/version1/fbc/version1">
- <geneAssociation id="ga_1" reaction="R_12PPDRtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_2" reaction="R_12PPDRtpp">
- <gene reference="STM2037"/>
- </geneAssociation>
- <geneAssociation id="ga_3" reaction="R_12PPDStex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_4" reaction="R_12PPDStpp">
- <gene reference="STM2037"/>
- </geneAssociation>
- <geneAssociation id="ga_5" reaction="R_14GLUCANabcpp">
- <and>
- <gene reference="STM4229"/>
- <gene reference="STM4228"/>
- <gene reference="STM4227"/>
- <gene reference="STM4230"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_6" reaction="R_14GLUCANtexi">
- <gene reference="STM4231"/>
- </geneAssociation>
- <geneAssociation id="ga_7" reaction="R_23CAMPtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_8" reaction="R_23CCMPtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_9" reaction="R_23CGMPtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_10" reaction="R_23CUMPtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_11" reaction="R_23DAPPAtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_12" reaction="R_23PDE2pp">
- <gene reference="STM4403"/>
- </geneAssociation>
- <geneAssociation id="ga_13" reaction="R_23PDE4pp">
- <gene reference="STM4403"/>
- </geneAssociation>
- <geneAssociation id="ga_14" reaction="R_23PDE7pp">
- <gene reference="STM4403"/>
- </geneAssociation>
- <geneAssociation id="ga_15" reaction="R_23PDE9pp">
- <gene reference="STM4403"/>
- </geneAssociation>
- <geneAssociation id="ga_16" reaction="R_26DAHtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_17" reaction="R_2AGPA120tipp">
- <gene reference="STM3009"/>
- </geneAssociation>
- <geneAssociation id="ga_18" reaction="R_2AGPA140tipp">
- <gene reference="STM3009"/>
- </geneAssociation>
- <geneAssociation id="ga_19" reaction="R_2AGPA141tipp">
- <gene reference="STM3009"/>
- </geneAssociation>
- <geneAssociation id="ga_20" reaction="R_2AGPA160tipp">
- <gene reference="STM3009"/>
- </geneAssociation>
- <geneAssociation id="ga_21" reaction="R_2AGPA161tipp">
- <gene reference="STM3009"/>
- </geneAssociation>
- <geneAssociation id="ga_22" reaction="R_2AGPA180tipp">
- <gene reference="STM3009"/>
- </geneAssociation>
- <geneAssociation id="ga_23" reaction="R_2AGPA181tipp">
- <gene reference="STM3009"/>
- </geneAssociation>
- <geneAssociation id="ga_24" reaction="R_2AGPE120tipp">
- <gene reference="STM3009"/>
- </geneAssociation>
- <geneAssociation id="ga_25" reaction="R_2AGPE140tipp">
- <gene reference="STM3009"/>
- </geneAssociation>
- <geneAssociation id="ga_26" reaction="R_2AGPE141tipp">
- <gene reference="STM3009"/>
- </geneAssociation>
- <geneAssociation id="ga_27" reaction="R_2AGPE160tipp">
- <gene reference="STM3009"/>
- </geneAssociation>
- <geneAssociation id="ga_28" reaction="R_2AGPE161tipp">
- <gene reference="STM3009"/>
- </geneAssociation>
- <geneAssociation id="ga_29" reaction="R_2AGPE180tipp">
- <gene reference="STM3009"/>
- </geneAssociation>
- <geneAssociation id="ga_30" reaction="R_2AGPE181tipp">
- <gene reference="STM3009"/>
- </geneAssociation>
- <geneAssociation id="ga_31" reaction="R_2AGPEAT120">
- <gene reference="STM3010"/>
- </geneAssociation>
- <geneAssociation id="ga_32" reaction="R_2AGPEAT140">
- <gene reference="STM3010"/>
- </geneAssociation>
- <geneAssociation id="ga_33" reaction="R_2AGPEAT141">
- <gene reference="STM3010"/>
- </geneAssociation>
- <geneAssociation id="ga_34" reaction="R_2AGPEAT160">
- <gene reference="STM3010"/>
- </geneAssociation>
- <geneAssociation id="ga_35" reaction="R_2AGPEAT161">
- <gene reference="STM3010"/>
- </geneAssociation>
- <geneAssociation id="ga_36" reaction="R_2AGPEAT180">
- <gene reference="STM3010"/>
- </geneAssociation>
- <geneAssociation id="ga_37" reaction="R_2AGPEAT181">
- <gene reference="STM3010"/>
- </geneAssociation>
- <geneAssociation id="ga_38" reaction="R_2AGPG120tipp">
- <gene reference="STM3009"/>
- </geneAssociation>
- <geneAssociation id="ga_39" reaction="R_2AGPG140tipp">
- <gene reference="STM3009"/>
- </geneAssociation>
- <geneAssociation id="ga_40" reaction="R_2AGPG141tipp">
- <gene reference="STM3009"/>
- </geneAssociation>
- <geneAssociation id="ga_41" reaction="R_2AGPG160tipp">
- <gene reference="STM3009"/>
- </geneAssociation>
- <geneAssociation id="ga_42" reaction="R_2AGPG161tipp">
- <gene reference="STM3009"/>
- </geneAssociation>
- <geneAssociation id="ga_43" reaction="R_2AGPG180tipp">
- <gene reference="STM3009"/>
- </geneAssociation>
- <geneAssociation id="ga_44" reaction="R_2AGPG181tipp">
- <gene reference="STM3009"/>
- </geneAssociation>
- <geneAssociation id="ga_45" reaction="R_2AGPGAT120">
- <gene reference="STM3010"/>
- </geneAssociation>
- <geneAssociation id="ga_46" reaction="R_2AGPGAT140">
- <gene reference="STM3010"/>
- </geneAssociation>
- <geneAssociation id="ga_47" reaction="R_2AGPGAT141">
- <gene reference="STM3010"/>
- </geneAssociation>
- <geneAssociation id="ga_48" reaction="R_2AGPGAT160">
- <gene reference="STM3010"/>
- </geneAssociation>
- <geneAssociation id="ga_49" reaction="R_2AGPGAT161">
- <gene reference="STM3010"/>
- </geneAssociation>
- <geneAssociation id="ga_50" reaction="R_2AGPGAT180">
- <gene reference="STM3010"/>
- </geneAssociation>
- <geneAssociation id="ga_51" reaction="R_2AGPGAT181">
- <gene reference="STM3010"/>
- </geneAssociation>
- <geneAssociation id="ga_52" reaction="R_2DGLCNRx">
- <gene reference="STM3646"/>
- </geneAssociation>
- <geneAssociation id="ga_53" reaction="R_2DGLCNRy">
- <gene reference="STM3646"/>
- </geneAssociation>
- <geneAssociation id="ga_54" reaction="R_2DGULRx">
- <gene reference="STM3646"/>
- </geneAssociation>
- <geneAssociation id="ga_55" reaction="R_2DGULRy">
- <gene reference="STM3646"/>
- </geneAssociation>
- <geneAssociation id="ga_56" reaction="R_2MAHMP">
- <or>
- <gene reference="STM0457"/>
- <gene reference="STM1235"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_57" reaction="R_34dhpactex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_58" reaction="R_3AMPtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_59" reaction="R_3CMPtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_60" reaction="R_3GMPtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- <gene reference="STM0999"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_61" reaction="R_3HAD100">
- <or>
- <gene reference="STM1067"/>
- <gene reference="STM0227"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_62" reaction="R_3HAD120">
- <or>
- <gene reference="STM1067"/>
- <gene reference="STM0227"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_63" reaction="R_3HAD121">
- <or>
- <gene reference="STM0227"/>
- <gene reference="STM1067"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_64" reaction="R_3HAD140">
- <or>
- <gene reference="STM1067"/>
- <gene reference="STM0227"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_65" reaction="R_3HAD141">
- <or>
- <gene reference="STM1067"/>
- <gene reference="STM0227"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_66" reaction="R_3HAD160">
- <or>
- <gene reference="STM1067"/>
- <gene reference="STM0227"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_67" reaction="R_3HAD161">
- <or>
- <gene reference="STM0227"/>
- <gene reference="STM1067"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_68" reaction="R_3HAD180">
- <or>
- <gene reference="STM1067"/>
- <gene reference="STM0227"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_69" reaction="R_3HAD181">
- <or>
- <gene reference="STM0227"/>
- <gene reference="STM1067"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_70" reaction="R_3HAD40">
- <or>
- <gene reference="STM1067"/>
- <gene reference="STM0227"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_71" reaction="R_3HAD60">
- <or>
- <gene reference="STM1067"/>
- <gene reference="STM0227"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_72" reaction="R_3HAD80">
- <or>
- <gene reference="STM1067"/>
- <gene reference="STM0227"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_73" reaction="R_3KGK">
- <gene reference="STM3674"/>
- </geneAssociation>
- <geneAssociation id="ga_74" reaction="R_3NTD2pp">
- <gene reference="STM4403"/>
- </geneAssociation>
- <geneAssociation id="ga_75" reaction="R_3NTD4pp">
- <or>
- <gene reference="STM4403"/>
- <gene reference="STM2927"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_76" reaction="R_3NTD7pp">
- <or>
- <gene reference="STM4403"/>
- <gene reference="STM2927"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_77" reaction="R_3NTD9pp">
- <gene reference="STM4403"/>
- </geneAssociation>
- <geneAssociation id="ga_78" reaction="R_3OAR100">
- <gene reference="STM1195"/>
- </geneAssociation>
- <geneAssociation id="ga_79" reaction="R_3OAR120">
- <gene reference="STM1195"/>
- </geneAssociation>
- <geneAssociation id="ga_80" reaction="R_3OAR121">
- <gene reference="STM1195"/>
- </geneAssociation>
- <geneAssociation id="ga_81" reaction="R_3OAR140">
- <gene reference="STM1195"/>
- </geneAssociation>
- <geneAssociation id="ga_82" reaction="R_3OAR141">
- <gene reference="STM1195"/>
- </geneAssociation>
- <geneAssociation id="ga_83" reaction="R_3OAR160">
- <gene reference="STM1195"/>
- </geneAssociation>
- <geneAssociation id="ga_84" reaction="R_3OAR161">
- <gene reference="STM1195"/>
- </geneAssociation>
- <geneAssociation id="ga_85" reaction="R_3OAR180">
- <gene reference="STM1195"/>
- </geneAssociation>
- <geneAssociation id="ga_86" reaction="R_3OAR181">
- <gene reference="STM1195"/>
- </geneAssociation>
- <geneAssociation id="ga_87" reaction="R_3OAR40">
- <gene reference="STM1195"/>
- </geneAssociation>
- <geneAssociation id="ga_88" reaction="R_3OAR60">
- <gene reference="STM1195"/>
- </geneAssociation>
- <geneAssociation id="ga_89" reaction="R_3OAR80">
- <gene reference="STM1195"/>
- </geneAssociation>
- <geneAssociation id="ga_90" reaction="R_3OAS100">
- <or>
- <gene reference="STM2378"/>
- <gene reference="STM1197"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_91" reaction="R_3OAS120">
- <or>
- <gene reference="STM2378"/>
- <gene reference="STM1197"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_92" reaction="R_3OAS121">
- <gene reference="STM2378"/>
- </geneAssociation>
- <geneAssociation id="ga_93" reaction="R_3OAS140">
- <or>
- <gene reference="STM2378"/>
- <gene reference="STM1197"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_94" reaction="R_3OAS141">
- <gene reference="STM2378"/>
- </geneAssociation>
- <geneAssociation id="ga_95" reaction="R_3OAS160">
- <or>
- <gene reference="STM2378"/>
- <gene reference="STM1197"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_96" reaction="R_3OAS161">
- <gene reference="STM2378"/>
- </geneAssociation>
- <geneAssociation id="ga_97" reaction="R_3OAS180">
- <or>
- <gene reference="STM1197"/>
- <gene reference="STM2378"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_98" reaction="R_3OAS181">
- <gene reference="STM1197"/>
- </geneAssociation>
- <geneAssociation id="ga_99" reaction="R_3OAS60">
- <or>
- <gene reference="STM2378"/>
- <gene reference="STM1197"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_100" reaction="R_3OAS80">
- <or>
- <gene reference="STM2378"/>
- <gene reference="STM1197"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_101" reaction="R_3PEPTabcpp">
- <and>
- <gene reference="STM1679"/>
- <gene reference="STM1745"/>
- <gene reference="STM1744"/>
- <gene reference="STM1743"/>
- <gene reference="STM1742"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_102" reaction="R_3PEPTtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_103" reaction="R_3UMPtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_104" reaction="R_4HOXPACDtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_105" reaction="R_4PCP">
- <gene reference="STM1800"/>
- </geneAssociation>
- <geneAssociation id="ga_106" reaction="R_4PEPTabcpp">
- <and>
- <gene reference="STM1746.S"/>
- <gene reference="STM1745"/>
- <gene reference="STM1744"/>
- <gene reference="STM1743"/>
- <gene reference="STM1742"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_107" reaction="R_4PEPTtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_108" reaction="R_5DGLCNR">
- <gene reference="STM4483"/>
- </geneAssociation>
- <geneAssociation id="ga_109" reaction="R_5DGLCNt2rpp">
- <gene reference="STM4482"/>
- </geneAssociation>
- <geneAssociation id="ga_110" reaction="R_5DGLCNtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM1473"/>
- <gene reference="STM0999"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_111" reaction="R_5DOAN">
- <gene reference="STM0207"/>
- </geneAssociation>
- <geneAssociation id="ga_112" reaction="R_A5PISO">
- <or>
- <gene reference="STM2838.S"/>
- <gene reference="STM3315"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_113" reaction="R_AACPS1">
- <and>
- <gene reference="STM3010"/>
- <gene reference="STM1196"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_114" reaction="R_AACPS2">
- <and>
- <gene reference="STM3010"/>
- <gene reference="STM1196"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_115" reaction="R_AACPS3">
- <and>
- <gene reference="STM3010"/>
- <gene reference="STM1196"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_116" reaction="R_AACPS4">
- <and>
- <gene reference="STM3010"/>
- <gene reference="STM1196"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_117" reaction="R_AACPS5">
- <and>
- <gene reference="STM3010"/>
- <gene reference="STM1196"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_118" reaction="R_AACPS6">
- <and>
- <gene reference="STM3010"/>
- <gene reference="STM1196"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_119" reaction="R_AACPS7">
- <and>
- <gene reference="STM3010"/>
- <gene reference="STM1196"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_120" reaction="R_AACPS8">
- <and>
- <gene reference="STM3010"/>
- <gene reference="STM1196"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_121" reaction="R_AACPS9">
- <and>
- <gene reference="STM3010"/>
- <gene reference="STM1196"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_122" reaction="R_AAMYL">
- <gene reference="STM1963"/>
- </geneAssociation>
- <geneAssociation id="ga_123" reaction="R_AAMYLpp">
- <gene reference="STM3664"/>
- </geneAssociation>
- <geneAssociation id="ga_124" reaction="R_ABTA">
- <gene reference="STM2792"/>
- </geneAssociation>
- <geneAssociation id="ga_125" reaction="R_ABUTD">
- <gene reference="STM1597"/>
- </geneAssociation>
- <geneAssociation id="ga_126" reaction="R_ABUTt2pp">
- <gene reference="STM2793"/>
- </geneAssociation>
- <geneAssociation id="ga_127" reaction="R_ABUTtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_128" reaction="R_ACACtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_129" reaction="R_ACALD">
- <or>
- <gene reference="STM1749"/>
- <gene reference="STM2463"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_130" reaction="R_ACALDtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_131" reaction="R_ACALDtpp">
- <gene reference="s0001"/>
- </geneAssociation>
- <geneAssociation id="ga_132" reaction="R_ACBIPGT">
- <gene reference="STM2018"/>
- </geneAssociation>
- <geneAssociation id="ga_133" reaction="R_ACCOAC">
- <and>
- <gene reference="STM0232"/>
- <gene reference="STM2366"/>
- <gene reference="STM3379"/>
- <gene reference="STM3380"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_134" reaction="R_ACCOAL">
- <or>
- <gene reference="STM0371"/>
- <gene reference="STM4275"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_135" reaction="R_ACGAL1Ptex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_136" reaction="R_ACGALtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_137" reaction="R_ACGAM1Ptex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_138" reaction="R_ACGAMK">
- <gene reference="STM1220"/>
- </geneAssociation>
- <geneAssociation id="ga_139" reaction="R_ACGAMT">
- <gene reference="STM3918"/>
- </geneAssociation>
- <geneAssociation id="ga_140" reaction="R_ACGAptspp">
- <or>
- <and>
- <gene reference="STM2433"/>
- <gene reference="STM1203"/>
- <gene reference="STM2431"/>
- <gene reference="STM2432"/>
- </and>
- <and>
- <gene reference="STM0685"/>
- <gene reference="STM2431"/>
- <gene reference="STM2432"/>
- </and>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_141" reaction="R_ACGAtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_142" reaction="R_ACGK">
- <gene reference="STM4122"/>
- </geneAssociation>
- <geneAssociation id="ga_143" reaction="R_ACGS">
- <gene reference="STM2992"/>
- </geneAssociation>
- <geneAssociation id="ga_144" reaction="R_ACHBS">
- <or>
- <and>
- <gene reference="STM3795"/>
- <gene reference="STM3796"/>
- </and>
- <and>
- <gene reference="STM3901"/>
- <gene reference="STM3902"/>
- </and>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_145" reaction="R_ACKr">
- <or>
- <gene reference="STM3242"/>
- <gene reference="STM2337"/>
- <gene reference="STM1883"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_146" reaction="R_ACLS">
- <or>
- <and>
- <gene reference="STM3795"/>
- <gene reference="STM3796"/>
- </and>
- <and>
- <gene reference="STM3901"/>
- <gene reference="STM3902"/>
- </and>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_147" reaction="R_ACMAMUT">
- <gene reference="STM3929"/>
- </geneAssociation>
- <geneAssociation id="ga_148" reaction="R_ACMANAptspp">
- <and>
- <gene reference="STM1830"/>
- <gene reference="STM1831"/>
- <gene reference="STM1832"/>
- <gene reference="STM2431"/>
- <gene reference="STM2432"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_149" reaction="R_ACMANAtex">
- <or>
- <gene reference="STM2267"/>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_150" reaction="R_ACMUMtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_151" reaction="R_ACNAMt2pp">
- <gene reference="STM3338"/>
- </geneAssociation>
- <geneAssociation id="ga_152" reaction="R_ACNAMtex">
- <or>
- <gene reference="STM0999"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_153" reaction="R_ACNML">
- <gene reference="STM3339"/>
- </geneAssociation>
- <geneAssociation id="ga_154" reaction="R_ACOAD1f">
- <gene reference="STM0309"/>
- </geneAssociation>
- <geneAssociation id="ga_155" reaction="R_ACOAD2f">
- <gene reference="STM0309"/>
- </geneAssociation>
- <geneAssociation id="ga_156" reaction="R_ACOAD3f">
- <gene reference="STM0309"/>
- </geneAssociation>
- <geneAssociation id="ga_157" reaction="R_ACOAD4f">
- <gene reference="STM0309"/>
- </geneAssociation>
- <geneAssociation id="ga_158" reaction="R_ACOAD5f">
- <gene reference="STM0309"/>
- </geneAssociation>
- <geneAssociation id="ga_159" reaction="R_ACOAD6f">
- <gene reference="STM0309"/>
- </geneAssociation>
- <geneAssociation id="ga_160" reaction="R_ACOAD7f">
- <gene reference="STM0309"/>
- </geneAssociation>
- <geneAssociation id="ga_161" reaction="R_ACOAD8f">
- <gene reference="STM0309"/>
- </geneAssociation>
- <geneAssociation id="ga_162" reaction="R_ACOATA">
- <and>
- <gene reference="STM1196"/>
- <gene reference="STM1193"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_163" reaction="R_ACODA">
- <gene reference="STM4120"/>
- </geneAssociation>
- <geneAssociation id="ga_164" reaction="R_ACONIs">
- <gene reference="s0001"/>
- </geneAssociation>
- <geneAssociation id="ga_165" reaction="R_ACONTa">
- <or>
- <gene reference="STM0158"/>
- <gene reference="STM1712"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_166" reaction="R_ACONTb">
- <or>
- <gene reference="STM0158"/>
- <gene reference="STM1712"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_167" reaction="R_ACOTA">
- <or>
- <gene reference="STM3468"/>
- <gene reference="STM1303"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_168" reaction="R_ACPS1">
- <or>
- <gene reference="STM2577"/>
- <gene reference="STM3583"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_169" reaction="R_ACS">
- <gene reference="STM4275"/>
- </geneAssociation>
- <geneAssociation id="ga_170" reaction="R_ACSERtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_171" reaction="R_ACSERtpp">
- <or>
- <gene reference="STM2645"/>
- <gene reference="STM1517"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_172" reaction="R_ACt4pp">
- <gene reference="STM4273"/>
- </geneAssociation>
- <geneAssociation id="ga_173" reaction="R_ACtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_174" reaction="R_ADA">
- <gene reference="STM1463"/>
- </geneAssociation>
- <geneAssociation id="ga_175" reaction="R_ADCL">
- <gene reference="STM1198"/>
- </geneAssociation>
- <geneAssociation id="ga_176" reaction="R_ADCS">
- <and>
- <gene reference="STM3469"/>
- <gene reference="STM1824"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_177" reaction="R_ADEt2rpp">
- <gene reference="STM3747"/>
- </geneAssociation>
- <geneAssociation id="ga_178" reaction="R_ADEtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_179" reaction="R_ADK1">
- <gene reference="STM0488"/>
- </geneAssociation>
- <geneAssociation id="ga_180" reaction="R_ADK3">
- <gene reference="STM0488"/>
- </geneAssociation>
- <geneAssociation id="ga_181" reaction="R_ADK4">
- <gene reference="STM0488"/>
- </geneAssociation>
- <geneAssociation id="ga_182" reaction="R_ADMDC">
- <gene reference="STM0165"/>
- </geneAssociation>
- <geneAssociation id="ga_183" reaction="R_ADNCYC">
- <gene reference="STM3939"/>
- </geneAssociation>
- <geneAssociation id="ga_184" reaction="R_ADNK1">
- <gene reference="STM0488"/>
- </geneAssociation>
- <geneAssociation id="ga_185" reaction="R_ADNUC">
- <gene reference="STM0051"/>
- </geneAssociation>
- <geneAssociation id="ga_186" reaction="R_ADNt2pp">
- <or>
- <gene reference="STM3113"/>
- <gene reference="STM2409"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_187" reaction="R_ADNt2rpp">
- <gene reference="STM2421"/>
- </geneAssociation>
- <geneAssociation id="ga_188" reaction="R_ADNtex">
- <gene reference="STM0413"/>
- </geneAssociation>
- <geneAssociation id="ga_189" reaction="R_ADOCBLabcpp">
- <and>
- <gene reference="STM1340"/>
- <gene reference="STM1342"/>
- <gene reference="STM0206"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_190" reaction="R_ADOCBLtonex">
- <and>
- <gene reference="STM4130"/>
- <gene reference="STM1737"/>
- <gene reference="STM3158"/>
- <gene reference="STM3159"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_191" reaction="R_ADPRDP">
- <gene reference="STM3185"/>
- </geneAssociation>
- <geneAssociation id="ga_192" reaction="R_ADPT">
- <gene reference="STM0483"/>
- </geneAssociation>
- <geneAssociation id="ga_193" reaction="R_ADSK">
- <gene reference="STM2933"/>
- </geneAssociation>
- <geneAssociation id="ga_194" reaction="R_ADSL1r">
- <gene reference="STM1232"/>
- </geneAssociation>
- <geneAssociation id="ga_195" reaction="R_ADSL2r">
- <gene reference="STM1232"/>
- </geneAssociation>
- <geneAssociation id="ga_196" reaction="R_ADSS">
- <gene reference="STM4366"/>
- </geneAssociation>
- <geneAssociation id="ga_197" reaction="R_AGDC">
- <gene reference="STM0683"/>
- </geneAssociation>
- <geneAssociation id="ga_198" reaction="R_AGM3PA">
- <gene reference="STM0146"/>
- </geneAssociation>
- <geneAssociation id="ga_199" reaction="R_AGM3PApp">
- <or>
- <gene reference="STM4358"/>
- <gene reference="STM2450"/>
- <gene reference="STM2991"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_200" reaction="R_AGM3PH">
- <gene reference="STM1209"/>
- </geneAssociation>
- <geneAssociation id="ga_201" reaction="R_AGM3Pt2pp">
- <gene reference="STM0444"/>
- </geneAssociation>
- <geneAssociation id="ga_202" reaction="R_AGM4PA">
- <gene reference="STM0146"/>
- </geneAssociation>
- <geneAssociation id="ga_203" reaction="R_AGM4PApp">
- <or>
- <gene reference="STM2991"/>
- <gene reference="STM4358"/>
- <gene reference="STM2450"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_204" reaction="R_AGM4PCP">
- <gene reference="STM1800"/>
- </geneAssociation>
- <geneAssociation id="ga_205" reaction="R_AGM4PH">
- <gene reference="STM1209"/>
- </geneAssociation>
- <geneAssociation id="ga_206" reaction="R_AGM4Pt2pp">
- <gene reference="STM0444"/>
- </geneAssociation>
- <geneAssociation id="ga_207" reaction="R_AGMH">
- <gene reference="STM1209"/>
- </geneAssociation>
- <geneAssociation id="ga_208" reaction="R_AGMHE">
- <gene reference="STM3710"/>
- </geneAssociation>
- <geneAssociation id="ga_209" reaction="R_AGMT">
- <gene reference="STM3078"/>
- </geneAssociation>
- <geneAssociation id="ga_210" reaction="R_AGMt2pp">
- <gene reference="STM0444"/>
- </geneAssociation>
- <geneAssociation id="ga_211" reaction="R_AGMtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_212" reaction="R_AGPAT120">
- <gene reference="STM3173"/>
- </geneAssociation>
- <geneAssociation id="ga_213" reaction="R_AGPAT140">
- <gene reference="STM3173"/>
- </geneAssociation>
- <geneAssociation id="ga_214" reaction="R_AGPAT141">
- <gene reference="STM3173"/>
- </geneAssociation>
- <geneAssociation id="ga_215" reaction="R_AGPAT160">
- <gene reference="STM3173"/>
- </geneAssociation>
- <geneAssociation id="ga_216" reaction="R_AGPAT161">
- <gene reference="STM3173"/>
- </geneAssociation>
- <geneAssociation id="ga_217" reaction="R_AGPAT180">
- <gene reference="STM3173"/>
- </geneAssociation>
- <geneAssociation id="ga_218" reaction="R_AGPAT181">
- <gene reference="STM3173"/>
- </geneAssociation>
- <geneAssociation id="ga_219" reaction="R_AGPR">
- <gene reference="STM4121"/>
- </geneAssociation>
- <geneAssociation id="ga_220" reaction="R_AHCYSNS">
- <gene reference="STM0207"/>
- </geneAssociation>
- <geneAssociation id="ga_221" reaction="R_AICART">
- <gene reference="STM4176"/>
- </geneAssociation>
- <geneAssociation id="ga_222" reaction="R_AIRC2">
- <gene reference="STM0533"/>
- </geneAssociation>
- <geneAssociation id="ga_223" reaction="R_AIRC3">
- <gene reference="STM0534"/>
- </geneAssociation>
- <geneAssociation id="ga_224" reaction="R_AKGDH">
- <and>
- <gene reference="STM0154"/>
- <gene reference="STM0736"/>
- <gene reference="STM0737"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_225" reaction="R_AKGt2rpp">
- <gene reference="STM2654"/>
- </geneAssociation>
- <geneAssociation id="ga_226" reaction="R_AKGtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_227" reaction="R_ALAALAabcpp">
- <and>
- <gene reference="STM3630"/>
- <gene reference="STM3629"/>
- <gene reference="STM3628"/>
- <gene reference="STM3627"/>
- <gene reference="STM3626"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_228" reaction="R_ALAALAr">
- <or>
- <gene reference="STM0380"/>
- <gene reference="STM0130"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_229" reaction="R_ALAALAtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_230" reaction="R_ALAGLUE">
- <gene reference="STM1681"/>
- </geneAssociation>
- <geneAssociation id="ga_231" reaction="R_ALAR">
- <or>
- <gene reference="STM4247"/>
- <gene reference="STM1802"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_232" reaction="R_ALATA_D2">
- <or>
- <gene reference="STM2555"/>
- <gene reference="STM0934"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_233" reaction="R_ALATA_L2">
- <or>
- <gene reference="STM0934"/>
- <gene reference="STM2555"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_234" reaction="R_ALATRS">
- <gene reference="STM2827"/>
- </geneAssociation>
- <geneAssociation id="ga_235" reaction="R_ALAabcpp">
- <and>
- <gene reference="STM3560"/>
- <gene reference="STM3561"/>
- <gene reference="STM3563"/>
- <gene reference="STM3567"/>
- <gene reference="STM3562"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_236" reaction="R_ALAt2pp">
- <gene reference="STM4398"/>
- </geneAssociation>
- <geneAssociation id="ga_237" reaction="R_ALAt4pp">
- <gene reference="STM0006"/>
- </geneAssociation>
- <geneAssociation id="ga_238" reaction="R_ALAtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_239" reaction="R_ALDD2y">
- <gene reference="STM3680"/>
- </geneAssociation>
- <geneAssociation id="ga_240" reaction="R_ALDD3y">
- <gene reference="STM3680"/>
- </geneAssociation>
- <geneAssociation id="ga_241" reaction="R_ALLTAMH">
- <gene reference="STM0527"/>
- </geneAssociation>
- <geneAssociation id="ga_242" reaction="R_ALLTN">
- <gene reference="STM0523"/>
- </geneAssociation>
- <geneAssociation id="ga_243" reaction="R_ALLTNt2rpp">
- <gene reference="STM0522"/>
- </geneAssociation>
- <geneAssociation id="ga_244" reaction="R_ALLTNtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_245" reaction="R_ALLtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_246" reaction="R_ALR2">
- <or>
- <gene reference="STM3165"/>
- <gene reference="STM0255"/>
- <gene reference="STM1288"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_247" reaction="R_ALR4x">
- <gene reference="STM4108"/>
- </geneAssociation>
- <geneAssociation id="ga_248" reaction="R_AM3PA">
- <gene reference="STM0146"/>
- </geneAssociation>
- <geneAssociation id="ga_249" reaction="R_AM4PA">
- <gene reference="STM0146"/>
- </geneAssociation>
- <geneAssociation id="ga_250" reaction="R_AM4PCP">
- <gene reference="STM1800"/>
- </geneAssociation>
- <geneAssociation id="ga_251" reaction="R_AMALT1">
- <gene reference="STM3513"/>
- </geneAssociation>
- <geneAssociation id="ga_252" reaction="R_AMALT2">
- <gene reference="STM3513"/>
- </geneAssociation>
- <geneAssociation id="ga_253" reaction="R_AMALT3">
- <gene reference="STM3513"/>
- </geneAssociation>
- <geneAssociation id="ga_254" reaction="R_AMALT4">
- <gene reference="STM3513"/>
- </geneAssociation>
- <geneAssociation id="ga_255" reaction="R_AMANAPEr">
- <gene reference="STM3337"/>
- </geneAssociation>
- <geneAssociation id="ga_256" reaction="R_AMANK">
- <gene reference="STM3336"/>
- </geneAssociation>
- <geneAssociation id="ga_257" reaction="R_AMAOTr">
- <gene reference="STM0793"/>
- </geneAssociation>
- <geneAssociation id="ga_258" reaction="R_AMMQLT8">
- <gene reference="STM3970"/>
- </geneAssociation>
- <geneAssociation id="ga_259" reaction="R_AMPMS2">
- <gene reference="STM4164"/>
- </geneAssociation>
- <geneAssociation id="ga_260" reaction="R_AMPN">
- <gene reference="STM2009"/>
- </geneAssociation>
- <geneAssociation id="ga_261" reaction="R_AMPTASECG">
- <or>
- <gene reference="STM1057"/>
- <gene reference="STM0316"/>
- <gene reference="STM4477"/>
- <gene reference="STM2536"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_262" reaction="R_AMPTASEPG">
- <or>
- <gene reference="STM2536"/>
- <gene reference="STM4477"/>
- <gene reference="STM0316"/>
- <gene reference="STM1057"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_263" reaction="R_AMPtex">
- <or>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- <gene reference="STM0320"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_264" reaction="R_ANHGMtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_265" reaction="R_ANHMK">
- <gene reference="STM1446"/>
- </geneAssociation>
- <geneAssociation id="ga_266" reaction="R_ANPRT">
- <gene reference="STM1724"/>
- </geneAssociation>
- <geneAssociation id="ga_267" reaction="R_ANS">
- <and>
- <gene reference="STM1724"/>
- <gene reference="STM1723"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_268" reaction="R_AOBUTDs">
- <gene reference="s0001"/>
- </geneAssociation>
- <geneAssociation id="ga_269" reaction="R_AOXSr">
- <gene reference="STM0795"/>
- </geneAssociation>
- <geneAssociation id="ga_270" reaction="R_AP4AH">
- <gene reference="STM0088"/>
- </geneAssociation>
- <geneAssociation id="ga_271" reaction="R_AP5AH">
- <gene reference="STM0088"/>
- </geneAssociation>
- <geneAssociation id="ga_272" reaction="R_APRAUR">
- <gene reference="STM0416"/>
- </geneAssociation>
- <geneAssociation id="ga_273" reaction="R_ARAI">
- <gene reference="STM0102"/>
- </geneAssociation>
- <geneAssociation id="ga_274" reaction="R_ARBTNabcpp">
- <and>
- <gene reference="STM0194"/>
- <gene reference="STM0192"/>
- <gene reference="STM0193"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_275" reaction="R_ARBTNexs">
- <gene reference="s0001"/>
- </geneAssociation>
- <geneAssociation id="ga_276" reaction="R_ARBt2rpp">
- <gene reference="STM3016"/>
- </geneAssociation>
- <geneAssociation id="ga_277" reaction="R_ARBt3ipp">
- <gene reference="STM1522"/>
- </geneAssociation>
- <geneAssociation id="ga_278" reaction="R_ARBtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_279" reaction="R_ARGAGMt7pp">
- <gene reference="STM4294"/>
- </geneAssociation>
- <geneAssociation id="ga_280" reaction="R_ARGDC">
- <or>
- <gene reference="STM4296"/>
- <gene reference="STM3086"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_281" reaction="R_ARGDCpp">
- <gene reference="STM3086"/>
- </geneAssociation>
- <geneAssociation id="ga_282" reaction="R_ARGORNt7pp">
- <gene reference="STM1477"/>
- </geneAssociation>
- <geneAssociation id="ga_283" reaction="R_ARGSL">
- <gene reference="STM4123"/>
- </geneAssociation>
- <geneAssociation id="ga_284" reaction="R_ARGSS">
- <gene reference="STM3290.S"/>
- </geneAssociation>
- <geneAssociation id="ga_285" reaction="R_ARGTRS">
- <gene reference="STM1909"/>
- </geneAssociation>
- <geneAssociation id="ga_286" reaction="R_ARGabcpp">
- <or>
- <and>
- <gene reference="STM2355"/>
- <gene reference="STM2352"/>
- <gene reference="STM2351"/>
- <gene reference="STM2353"/>
- </and>
- <and>
- <gene reference="STM0890"/>
- <gene reference="STM0887"/>
- <gene reference="STM0888"/>
- <gene reference="STM0891"/>
- <gene reference="STM0889"/>
- </and>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_287" reaction="R_ARGt3pp">
- <gene reference="STM3066"/>
- </geneAssociation>
- <geneAssociation id="ga_288" reaction="R_ARGtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_289" reaction="R_ASAD">
- <gene reference="STM3539"/>
- </geneAssociation>
- <geneAssociation id="ga_290" reaction="R_ASCBPL">
- <gene reference="STM4382"/>
- </geneAssociation>
- <geneAssociation id="ga_291" reaction="R_ASCBptspp">
- <and>
- <gene reference="STM2431"/>
- <gene reference="STM2432"/>
- <gene reference="STM4385"/>
- <gene reference="STM4384"/>
- <gene reference="STM4383.S"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_292" reaction="R_ASCBtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_293" reaction="R_ASNN">
- <or>
- <gene reference="STM1294"/>
- <gene reference="STM0847"/>
- <gene reference="STM3598"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_294" reaction="R_ASNNpp">
- <gene reference="STM3106"/>
- </geneAssociation>
- <geneAssociation id="ga_295" reaction="R_ASNS1">
- <gene reference="STM0680"/>
- </geneAssociation>
- <geneAssociation id="ga_296" reaction="R_ASNS2">
- <gene reference="STM3877"/>
- </geneAssociation>
- <geneAssociation id="ga_297" reaction="R_ASNTRS">
- <gene reference="STM1000"/>
- </geneAssociation>
- <geneAssociation id="ga_298" reaction="R_ASNt2rpp">
- <gene reference="STM1584"/>
- </geneAssociation>
- <geneAssociation id="ga_299" reaction="R_ASNtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_300" reaction="R_ASO3tex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_301" reaction="R_ASP1DC">
- <gene reference="STM0180"/>
- </geneAssociation>
- <geneAssociation id="ga_302" reaction="R_ASPCT">
- <and>
- <gene reference="STM4459"/>
- <gene reference="STM4460"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_303" reaction="R_ASPK">
- <or>
- <gene reference="STM0002"/>
- <gene reference="STM4101"/>
- <gene reference="STM4220"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_304" reaction="R_ASPO3">
- <gene reference="STM2641"/>
- </geneAssociation>
- <geneAssociation id="ga_305" reaction="R_ASPO4">
- <gene reference="STM2641"/>
- </geneAssociation>
- <geneAssociation id="ga_306" reaction="R_ASPO5">
- <gene reference="STM2641"/>
- </geneAssociation>
- <geneAssociation id="ga_307" reaction="R_ASPO6">
- <gene reference="STM2641"/>
- </geneAssociation>
- <geneAssociation id="ga_308" reaction="R_ASPT">
- <gene reference="STM4326"/>
- </geneAssociation>
- <geneAssociation id="ga_309" reaction="R_ASPTA">
- <gene reference="STM0998"/>
- </geneAssociation>
- <geneAssociation id="ga_310" reaction="R_ASPTRS">
- <gene reference="STM1901"/>
- </geneAssociation>
- <geneAssociation id="ga_311" reaction="R_ASPabcpp">
- <and>
- <gene reference="STM0665"/>
- <gene reference="STM0664"/>
- <gene reference="STM0663"/>
- <gene reference="STM0662"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_312" reaction="R_ASPt2_2pp">
- <gene reference="STM3614"/>
- </geneAssociation>
- <geneAssociation id="ga_313" reaction="R_ASPt2pp">
- <gene reference="STM4283"/>
- </geneAssociation>
- <geneAssociation id="ga_314" reaction="R_ASPtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_315" reaction="R_AST">
- <gene reference="STM1304"/>
- </geneAssociation>
- <geneAssociation id="ga_316" reaction="R_ATHRDHr">
- <gene reference="STM1511"/>
- </geneAssociation>
- <geneAssociation id="ga_317" reaction="R_ATPHs">
- <gene reference="s0001"/>
- </geneAssociation>
- <geneAssociation id="ga_318" reaction="R_ATPPRT">
- <gene reference="STM2071"/>
- </geneAssociation>
- <geneAssociation id="ga_319" reaction="R_ATPS4rpp">
- <or>
- <and>
- <gene reference="STM3869"/>
- <gene reference="STM3870"/>
- <gene reference="STM3871"/>
- <gene reference="STM3864"/>
- <gene reference="STM3865"/>
- <gene reference="STM3866"/>
- <gene reference="STM3867"/>
- <gene reference="STM3868"/>
- </and>
- <and>
- <gene reference="STM3869"/>
- <gene reference="STM3870"/>
- <gene reference="STM3871"/>
- <gene reference="STM3864"/>
- <gene reference="STM3865"/>
- <gene reference="STM3866"/>
- <gene reference="STM3867"/>
- <gene reference="STM3868"/>
- <gene reference="STM3872"/>
- </and>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_320" reaction="R_BALAt2pp">
- <gene reference="STM4398"/>
- </geneAssociation>
- <geneAssociation id="ga_321" reaction="R_BALAtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_322" reaction="R_BSORx">
- <gene reference="STM3644"/>
- </geneAssociation>
- <geneAssociation id="ga_323" reaction="R_BSORy">
- <gene reference="STM3644"/>
- </geneAssociation>
- <geneAssociation id="ga_324" reaction="R_BTS4">
- <gene reference="STM0794"/>
- </geneAssociation>
- <geneAssociation id="ga_325" reaction="R_BUTSO3tex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_326" reaction="R_BUTtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_327" reaction="R_CA2t3pp">
- <gene reference="STM1771"/>
- </geneAssociation>
- <geneAssociation id="ga_328" reaction="R_CA2tex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_329" reaction="R_CADVtpp">
- <gene reference="STM2558"/>
- </geneAssociation>
- <geneAssociation id="ga_330" reaction="R_CAt6pp">
- <gene reference="STM3314"/>
- </geneAssociation>
- <geneAssociation id="ga_331" reaction="R_CBIAT">
- <gene reference="STM1718"/>
- </geneAssociation>
- <geneAssociation id="ga_332" reaction="R_CBItonex">
- <and>
- <gene reference="STM4130"/>
- <gene reference="STM1737"/>
- <gene reference="STM3158"/>
- <gene reference="STM3159"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_333" reaction="R_CBIuabcpp">
- <and>
- <gene reference="STM1340"/>
- <gene reference="STM1342"/>
- <gene reference="STM0206"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_334" reaction="R_CBL1abcpp">
- <and>
- <gene reference="STM1340"/>
- <gene reference="STM1342"/>
- <gene reference="STM0206"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_335" reaction="R_CBL1tonex">
- <and>
- <gene reference="STM4130"/>
- <gene reference="STM1737"/>
- <gene reference="STM3158"/>
- <gene reference="STM3159"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_336" reaction="R_CBPS">
- <and>
- <gene reference="STM0066"/>
- <gene reference="STM0067"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_337" reaction="R_CD2abcpp">
- <gene reference="STM3576"/>
- </geneAssociation>
- <geneAssociation id="ga_338" reaction="R_CD2t3pp">
- <or>
- <gene reference="STM0758"/>
- <gene reference="STM4061"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_339" reaction="R_CD2tex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_340" reaction="R_CD2tpp">
- <gene reference="STM3190"/>
- </geneAssociation>
- <geneAssociation id="ga_341" reaction="R_CDAPPA120">
- <gene reference="STM4064"/>
- </geneAssociation>
- <geneAssociation id="ga_342" reaction="R_CDAPPA140">
- <gene reference="STM4064"/>
- </geneAssociation>
- <geneAssociation id="ga_343" reaction="R_CDAPPA141">
- <gene reference="STM4064"/>
- </geneAssociation>
- <geneAssociation id="ga_344" reaction="R_CDAPPA160">
- <gene reference="STM4064"/>
- </geneAssociation>
- <geneAssociation id="ga_345" reaction="R_CDAPPA161">
- <gene reference="STM4064"/>
- </geneAssociation>
- <geneAssociation id="ga_346" reaction="R_CDAPPA180">
- <gene reference="STM4064"/>
- </geneAssociation>
- <geneAssociation id="ga_347" reaction="R_CDAPPA181">
- <gene reference="STM4064"/>
- </geneAssociation>
- <geneAssociation id="ga_348" reaction="R_CDPMEK">
- <gene reference="STM1779"/>
- </geneAssociation>
- <geneAssociation id="ga_349" reaction="R_CFAS160E">
- <gene reference="STM1427"/>
- </geneAssociation>
- <geneAssociation id="ga_350" reaction="R_CFAS160G">
- <gene reference="STM1427"/>
- </geneAssociation>
- <geneAssociation id="ga_351" reaction="R_CFAS180E">
- <gene reference="STM1427"/>
- </geneAssociation>
- <geneAssociation id="ga_352" reaction="R_CFAS180G">
- <gene reference="STM1427"/>
- </geneAssociation>
- <geneAssociation id="ga_353" reaction="R_CGLYabcpp">
- <and>
- <gene reference="STM3630"/>
- <gene reference="STM3629"/>
- <gene reference="STM3628"/>
- <gene reference="STM3627"/>
- <gene reference="STM3626"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_354" reaction="R_CGLYtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_355" reaction="R_CHLabcpp">
- <and>
- <gene reference="STM2162"/>
- <gene reference="STM2163"/>
- <gene reference="STM2164"/>
- <gene reference="STM2165"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_356" reaction="R_CHLtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_357" reaction="R_CHORS">
- <gene reference="STM2384"/>
- </geneAssociation>
- <geneAssociation id="ga_358" reaction="R_CHRPL">
- <gene reference="STM4233"/>
- </geneAssociation>
- <geneAssociation id="ga_359" reaction="R_CITL">
- <and>
- <or>
- <and>
- <gene reference="STM0621"/>
- <gene reference="STM0622"/>
- <gene reference="STM0623"/>
- </and>
- <and>
- <gene reference="STM0059"/>
- <gene reference="STM0060"/>
- <gene reference="STM0061"/>
- </and>
- </or>
- <gene reference="STM0620"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_360" reaction="R_CITt7pp">
- <gene reference="STM0618"/>
- </geneAssociation>
- <geneAssociation id="ga_361" reaction="R_CITtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_362" reaction="R_ICITtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_363" reaction="R_ACONCtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_364" reaction="R_CLPNS120pp">
- <or>
- <gene reference="STM1739"/>
- <gene reference="STM0812"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_365" reaction="R_CLPNS140pp">
- <or>
- <gene reference="STM1739"/>
- <gene reference="STM0812"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_366" reaction="R_CLPNS141pp">
- <or>
- <gene reference="STM1739"/>
- <gene reference="STM0812"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_367" reaction="R_CLPNS160pp">
- <or>
- <gene reference="STM1739"/>
- <gene reference="STM0812"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_368" reaction="R_CLPNS161pp">
- <or>
- <gene reference="STM1739"/>
- <gene reference="STM0812"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_369" reaction="R_CLPNS180pp">
- <or>
- <gene reference="STM1739"/>
- <gene reference="STM0812"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_370" reaction="R_CLPNS181pp">
- <or>
- <gene reference="STM1739"/>
- <gene reference="STM0812"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_371" reaction="R_CLt3_2pp">
- <or>
- <gene reference="STM0203"/>
- <gene reference="STM1490"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_372" reaction="R_CLtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_373" reaction="R_CMPtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_374" reaction="R_CO2tex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_375" reaction="R_CO2tpp">
- <gene reference="s0001"/>
- </geneAssociation>
- <geneAssociation id="ga_376" reaction="R_COBALT2abcpp">
- <gene reference="STM3576"/>
- </geneAssociation>
- <geneAssociation id="ga_377" reaction="R_COBALT2t3pp">
- <or>
- <gene reference="STM4061"/>
- <gene reference="STM0758"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_378" reaction="R_COBALT2tex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_379" reaction="R_COBALT2tpp">
- <or>
- <gene reference="STM3190"/>
- <gene reference="STM3952"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_380" reaction="R_COLIPAabcpp">
- <gene reference="STM0984"/>
- </geneAssociation>
- <geneAssociation id="ga_381" reaction="R_CPGNabcpp">
- <and>
- <gene reference="STM0194"/>
- <gene reference="STM0192"/>
- <gene reference="STM0193"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_382" reaction="R_CPGNexs">
- <gene reference="s0001"/>
- </geneAssociation>
- <geneAssociation id="ga_383" reaction="R_CPGNtonex">
- <and>
- <gene reference="STM1204"/>
- <gene reference="STM1737"/>
- <gene reference="STM3158"/>
- <gene reference="STM3159"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_384" reaction="R_CPPPGO">
- <gene reference="STM2451"/>
- </geneAssociation>
- <geneAssociation id="ga_385" reaction="R_CPPPGO2">
- <gene reference="STM4004"/>
- </geneAssociation>
- <geneAssociation id="ga_386" reaction="R_CRNBTCT">
- <gene reference="STM0072"/>
- </geneAssociation>
- <geneAssociation id="ga_387" reaction="R_CRNCAL2">
- <gene reference="STM0071"/>
- </geneAssociation>
- <geneAssociation id="ga_388" reaction="R_CRNCAR">
- <gene reference="STM0070"/>
- </geneAssociation>
- <geneAssociation id="ga_389" reaction="R_CRNCBCT">
- <gene reference="STM0072"/>
- </geneAssociation>
- <geneAssociation id="ga_390" reaction="R_CRNCDH">
- <gene reference="STM0070"/>
- </geneAssociation>
- <geneAssociation id="ga_391" reaction="R_CRNDCAL2">
- <gene reference="STM0071"/>
- </geneAssociation>
- <geneAssociation id="ga_392" reaction="R_CRNDabcpp">
- <and>
- <gene reference="STM2809"/>
- <gene reference="STM2810"/>
- <gene reference="STM2811"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_393" reaction="R_CRNDt2rpp">
- <gene reference="STM4290"/>
- </geneAssociation>
- <geneAssociation id="ga_394" reaction="R_CRNabcpp">
- <and>
- <gene reference="STM2809"/>
- <gene reference="STM2810"/>
- <gene reference="STM2811"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_395" reaction="R_CRNt2rpp">
- <gene reference="STM4290"/>
- </geneAssociation>
- <geneAssociation id="ga_396" reaction="R_CRNt7pp">
- <gene reference="STM0074"/>
- </geneAssociation>
- <geneAssociation id="ga_397" reaction="R_CRNt8pp">
- <gene reference="STM0074"/>
- </geneAssociation>
- <geneAssociation id="ga_398" reaction="R_CRNtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_399" reaction="R_CS">
- <gene reference="STM0730"/>
- </geneAssociation>
- <geneAssociation id="ga_400" reaction="R_CSNtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_401" reaction="R_CTBTCAL2">
- <gene reference="STM0071"/>
- </geneAssociation>
- <geneAssociation id="ga_402" reaction="R_CTBTabcpp">
- <and>
- <gene reference="STM2809"/>
- <gene reference="STM2810"/>
- <gene reference="STM2811"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_403" reaction="R_CTBTt2rpp">
- <gene reference="STM4290"/>
- </geneAssociation>
- <geneAssociation id="ga_404" reaction="R_CTPS2">
- <gene reference="STM2953"/>
- </geneAssociation>
- <geneAssociation id="ga_405" reaction="R_CU1Opp">
- <gene reference="STM0168"/>
- </geneAssociation>
- <geneAssociation id="ga_406" reaction="R_CU1abcpp">
- <gene reference="STM0498"/>
- </geneAssociation>
- <geneAssociation id="ga_407" reaction="R_AU1abcpp">
- <gene reference="STM0353"/>
- </geneAssociation>
- <geneAssociation id="ga_408" reaction="R_CU2abcpp">
- <gene reference="STM3576"/>
- </geneAssociation>
- <geneAssociation id="ga_409" reaction="R_CU2tex">
- <or>
- <gene reference="STM2267"/>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_410" reaction="R_CU2tpp">
- <gene reference="STM3190"/>
- </geneAssociation>
- <geneAssociation id="ga_411" reaction="R_CUtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_412" reaction="R_CYANST">
- <gene reference="STM3525"/>
- </geneAssociation>
- <geneAssociation id="ga_413" reaction="R_CYANSTpp">
- <gene reference="STM1686"/>
- </geneAssociation>
- <geneAssociation id="ga_414" reaction="R_CYANtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_415" reaction="R_CYNTtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_416" reaction="R_CYSDS">
- <gene reference="STM3161"/>
- </geneAssociation>
- <geneAssociation id="ga_417" reaction="R_CYSDtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_418" reaction="R_CYSS">
- <or>
- <gene reference="STM2430"/>
- <gene reference="STM2440"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_419" reaction="R_CYSSADS">
- <gene reference="STM2984"/>
- </geneAssociation>
- <geneAssociation id="ga_420" reaction="R_CYSTL">
- <or>
- <gene reference="STM3161"/>
- <gene reference="STM1557"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_421" reaction="R_CYSTRS">
- <gene reference="STM0537"/>
- </geneAssociation>
- <geneAssociation id="ga_422" reaction="R_CYSabc2pp">
- <and>
- <gene reference="STM0956"/>
- <gene reference="STM0957"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_423" reaction="R_CYStex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_424" reaction="R_CYSItex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_425" reaction="R_CYStpp">
- <or>
- <gene reference="STM2645"/>
- <gene reference="STM1517"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_426" reaction="R_CYTBO3_4pp">
- <and>
- <gene reference="STM0440"/>
- <gene reference="STM0441"/>
- <gene reference="STM0442"/>
- <gene reference="STM0443"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_427" reaction="R_CYTD">
- <gene reference="STM2183"/>
- </geneAssociation>
- <geneAssociation id="ga_428" reaction="R_CYTDH">
- <or>
- <gene reference="STM0661"/>
- <gene reference="STM0051"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_429" reaction="R_CYTDK2">
- <gene reference="STM2122"/>
- </geneAssociation>
- <geneAssociation id="ga_430" reaction="R_CYTDt2pp">
- <or>
- <gene reference="STM3113"/>
- <gene reference="STM2409"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_431" reaction="R_CYTDt2rpp">
- <gene reference="STM2421"/>
- </geneAssociation>
- <geneAssociation id="ga_432" reaction="R_CYTDtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_433" reaction="R_CYTK1">
- <gene reference="STM0980"/>
- </geneAssociation>
- <geneAssociation id="ga_434" reaction="R_CYTK2">
- <gene reference="STM0980"/>
- </geneAssociation>
- <geneAssociation id="ga_435" reaction="R_DAAD">
- <gene reference="STM1803"/>
- </geneAssociation>
- <geneAssociation id="ga_436" reaction="R_DADA">
- <gene reference="STM1463"/>
- </geneAssociation>
- <geneAssociation id="ga_437" reaction="R_DADK">
- <gene reference="STM0488"/>
- </geneAssociation>
- <geneAssociation id="ga_438" reaction="R_DADNt2pp">
- <or>
- <gene reference="STM2409"/>
- <gene reference="STM3113"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_439" reaction="R_DADNtex">
- <gene reference="STM0413"/>
- </geneAssociation>
- <geneAssociation id="ga_440" reaction="R_DAGK120">
- <gene reference="STM4236"/>
- </geneAssociation>
- <geneAssociation id="ga_441" reaction="R_DAGK140">
- <gene reference="STM4236"/>
- </geneAssociation>
- <geneAssociation id="ga_442" reaction="R_DAGK141">
- <gene reference="STM4236"/>
- </geneAssociation>
- <geneAssociation id="ga_443" reaction="R_DAGK160">
- <gene reference="STM4236"/>
- </geneAssociation>
- <geneAssociation id="ga_444" reaction="R_DAGK161">
- <gene reference="STM4236"/>
- </geneAssociation>
- <geneAssociation id="ga_445" reaction="R_DAGK180">
- <gene reference="STM4236"/>
- </geneAssociation>
- <geneAssociation id="ga_446" reaction="R_DAGK181">
- <gene reference="STM4236"/>
- </geneAssociation>
- <geneAssociation id="ga_447" reaction="R_DALAt2pp">
- <gene reference="STM4398"/>
- </geneAssociation>
- <geneAssociation id="ga_448" reaction="R_DALAtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_449" reaction="R_DAMPtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_450" reaction="R_DAPDC">
- <gene reference="STM3013"/>
- </geneAssociation>
- <geneAssociation id="ga_451" reaction="R_DAPE">
- <gene reference="STM3947"/>
- </geneAssociation>
- <geneAssociation id="ga_452" reaction="R_DAPabcpp">
- <gene reference="STM1954"/>
- </geneAssociation>
- <geneAssociation id="ga_453" reaction="R_DAPtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_454" reaction="R_DASYN120">
- <gene reference="STM0222"/>
- </geneAssociation>
- <geneAssociation id="ga_455" reaction="R_DASYN140">
- <gene reference="STM0222"/>
- </geneAssociation>
- <geneAssociation id="ga_456" reaction="R_DASYN141">
- <gene reference="STM0222"/>
- </geneAssociation>
- <geneAssociation id="ga_457" reaction="R_DASYN160">
- <gene reference="STM0222"/>
- </geneAssociation>
- <geneAssociation id="ga_458" reaction="R_DASYN161">
- <gene reference="STM0222"/>
- </geneAssociation>
- <geneAssociation id="ga_459" reaction="R_DASYN180">
- <gene reference="STM0222"/>
- </geneAssociation>
- <geneAssociation id="ga_460" reaction="R_DASYN181">
- <gene reference="STM0222"/>
- </geneAssociation>
- <geneAssociation id="ga_461" reaction="R_DATPHs">
- <gene reference="s0001"/>
- </geneAssociation>
- <geneAssociation id="ga_462" reaction="R_DB4PS">
- <gene reference="STM3195"/>
- </geneAssociation>
- <geneAssociation id="ga_463" reaction="R_DBTS">
- <or>
- <gene reference="STM0797"/>
- <gene reference="STM1489"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_464" reaction="R_DCAtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_465" reaction="R_DCMPtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_466" reaction="R_DCTPD">
- <gene reference="STM2121"/>
- </geneAssociation>
- <geneAssociation id="ga_467" reaction="R_DCYTD">
- <gene reference="STM2183"/>
- </geneAssociation>
- <geneAssociation id="ga_468" reaction="R_DCYTt2pp">
- <or>
- <gene reference="STM3113"/>
- <gene reference="STM2409"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_469" reaction="R_DCYTtex">
- <gene reference="STM0413"/>
- </geneAssociation>
- <geneAssociation id="ga_470" reaction="R_DDCAtexi">
- <gene reference="STM2391"/>
- </geneAssociation>
- <geneAssociation id="ga_471" reaction="R_DDGALK">
- <gene reference="STM3829"/>
- </geneAssociation>
- <geneAssociation id="ga_472" reaction="R_DDGLCNtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_473" reaction="R_DDGLK">
- <gene reference="STM3612"/>
- </geneAssociation>
- <geneAssociation id="ga_474" reaction="R_DDPA">
- <or>
- <gene reference="STM2670"/>
- <gene reference="STM0760"/>
- <gene reference="STM1347"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_475" reaction="R_DGK1">
- <gene reference="STM3740"/>
- </geneAssociation>
- <geneAssociation id="ga_476" reaction="R_DGMPtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_477" reaction="R_DGSNt2pp">
- <gene reference="STM3113"/>
- </geneAssociation>
- <geneAssociation id="ga_478" reaction="R_DGSNtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_479" reaction="R_DHAD1">
- <gene reference="STM3904"/>
- </geneAssociation>
- <geneAssociation id="ga_480" reaction="R_DHAD2">
- <gene reference="STM3904"/>
- </geneAssociation>
- <geneAssociation id="ga_481" reaction="R_DHAtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_482" reaction="R_DHBD">
- <gene reference="STM0598"/>
- </geneAssociation>
- <geneAssociation id="ga_483" reaction="R_DHBS">
- <gene reference="STM0596"/>
- </geneAssociation>
- <geneAssociation id="ga_484" reaction="R_DHDPRy">
- <gene reference="STM0064"/>
- </geneAssociation>
- <geneAssociation id="ga_485" reaction="R_DHDPS">
- <gene reference="STM2489"/>
- </geneAssociation>
- <geneAssociation id="ga_486" reaction="R_DHFR">
- <gene reference="STM0087"/>
- </geneAssociation>
- <geneAssociation id="ga_487" reaction="R_DHFS">
- <gene reference="STM2365"/>
- </geneAssociation>
- <geneAssociation id="ga_488" reaction="R_DHNAOT4">
- <gene reference="STM4090"/>
- </geneAssociation>
- <geneAssociation id="ga_489" reaction="R_DHNPA2">
- <gene reference="STM3206"/>
- </geneAssociation>
- <geneAssociation id="ga_490" reaction="R_DHORD2">
- <gene reference="STM1058"/>
- </geneAssociation>
- <geneAssociation id="ga_491" reaction="R_DHORD5">
- <gene reference="STM1058"/>
- </geneAssociation>
- <geneAssociation id="ga_492" reaction="R_DHORTS">
- <gene reference="STM1163"/>
- </geneAssociation>
- <geneAssociation id="ga_493" reaction="R_DHPPDA2">
- <gene reference="STM0416"/>
- </geneAssociation>
- <geneAssociation id="ga_494" reaction="R_DHPS2">
- <gene reference="STM3295"/>
- </geneAssociation>
- <geneAssociation id="ga_495" reaction="R_DHPTDCs">
- <gene reference="s0001"/>
- </geneAssociation>
- <geneAssociation id="ga_496" reaction="R_DHQS">
- <gene reference="STM3486"/>
- </geneAssociation>
- <geneAssociation id="ga_497" reaction="R_DHQTi">
- <gene reference="STM1358"/>
- </geneAssociation>
- <geneAssociation id="ga_498" reaction="R_DIMPtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_499" reaction="R_DINSt2pp">
- <gene reference="STM3113"/>
- </geneAssociation>
- <geneAssociation id="ga_500" reaction="R_DINStex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_501" reaction="R_DKGLCNR1">
- <or>
- <gene reference="STM3165"/>
- <gene reference="STM0255"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_502" reaction="R_DKGLCNR2x">
- <gene reference="STM3646"/>
- </geneAssociation>
- <geneAssociation id="ga_503" reaction="R_DKGLCNR2y">
- <gene reference="STM3646"/>
- </geneAssociation>
- <geneAssociation id="ga_504" reaction="R_DMATT">
- <gene reference="STM0423"/>
- </geneAssociation>
- <geneAssociation id="ga_505" reaction="R_DMPPS">
- <gene reference="STM0049"/>
- </geneAssociation>
- <geneAssociation id="ga_506" reaction="R_DMQMT">
- <gene reference="STM2276"/>
- </geneAssociation>
- <geneAssociation id="ga_507" reaction="R_DMSOtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_508" reaction="R_DMStex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_509" reaction="R_DNTPPA">
- <or>
- <gene reference="STM1900"/>
- <gene reference="STM0137"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_510" reaction="R_DOGULNR">
- <gene reference="STM3668"/>
- </geneAssociation>
- <geneAssociation id="ga_511" reaction="R_DOPAtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_512" reaction="R_DPCOAK">
- <gene reference="STM0140"/>
- </geneAssociation>
- <geneAssociation id="ga_513" reaction="R_DRPA">
- <gene reference="STM4567"/>
- </geneAssociation>
- <geneAssociation id="ga_514" reaction="R_DSBAO1">
- <and>
- <gene reference="STM3997"/>
- <gene reference="STM1807"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_515" reaction="R_DSBAO2">
- <and>
- <gene reference="STM3997"/>
- <gene reference="STM1807"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_516" reaction="R_DSBCGT">
- <gene reference="STM3043"/>
- </geneAssociation>
- <geneAssociation id="ga_517" reaction="R_DSBDR">
- <or>
- <and>
- <gene reference="STM4323"/>
- <gene reference="STM3915"/>
- </and>
- <and>
- <gene reference="STM4323"/>
- <gene reference="STM2649"/>
- </and>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_518" reaction="R_DSBGGT">
- <gene reference="STM0607"/>
- </geneAssociation>
- <geneAssociation id="ga_519" reaction="R_DSERDHr">
- <gene reference="STM1511"/>
- </geneAssociation>
- <geneAssociation id="ga_520" reaction="R_DSERt2pp">
- <gene reference="STM4398"/>
- </geneAssociation>
- <geneAssociation id="ga_521" reaction="R_DSERtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_522" reaction="R_DTMPK">
- <gene reference="STM1200"/>
- </geneAssociation>
- <geneAssociation id="ga_523" reaction="R_DTMPtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_524" reaction="R_DUMPtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_525" reaction="R_DURIK1">
- <gene reference="STM1750"/>
- </geneAssociation>
- <geneAssociation id="ga_526" reaction="R_DURIPP">
- <or>
- <gene reference="STM4568"/>
- <gene reference="STM4570"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_527" reaction="R_DURIt2pp">
- <or>
- <gene reference="STM2409"/>
- <gene reference="STM3113"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_528" reaction="R_DURItex">
- <gene reference="STM0413"/>
- </geneAssociation>
- <geneAssociation id="ga_529" reaction="R_DUTPDP">
- <gene reference="STM3731"/>
- </geneAssociation>
- <geneAssociation id="ga_530" reaction="R_DXPRIi">
- <gene reference="STM0220"/>
- </geneAssociation>
- <geneAssociation id="ga_531" reaction="R_DXPS">
- <gene reference="STM0422"/>
- </geneAssociation>
- <geneAssociation id="ga_532" reaction="R_DXYLK">
- <gene reference="STM3660"/>
- </geneAssociation>
- <geneAssociation id="ga_533" reaction="R_D_LACt2pp">
- <gene reference="STM3692"/>
- </geneAssociation>
- <geneAssociation id="ga_534" reaction="R_D_LACtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_535" reaction="R_E4PD">
- <gene reference="STM3070"/>
- </geneAssociation>
- <geneAssociation id="ga_536" reaction="R_EAR100x">
- <gene reference="STM1700"/>
- </geneAssociation>
- <geneAssociation id="ga_537" reaction="R_EAR100y">
- <gene reference="STM1700"/>
- </geneAssociation>
- <geneAssociation id="ga_538" reaction="R_EAR120x">
- <gene reference="STM1700"/>
- </geneAssociation>
- <geneAssociation id="ga_539" reaction="R_EAR120y">
- <gene reference="STM1700"/>
- </geneAssociation>
- <geneAssociation id="ga_540" reaction="R_EAR121x">
- <gene reference="STM1700"/>
- </geneAssociation>
- <geneAssociation id="ga_541" reaction="R_EAR121y">
- <gene reference="STM1700"/>
- </geneAssociation>
- <geneAssociation id="ga_542" reaction="R_EAR140x">
- <gene reference="STM1700"/>
- </geneAssociation>
- <geneAssociation id="ga_543" reaction="R_EAR140y">
- <gene reference="STM1700"/>
- </geneAssociation>
- <geneAssociation id="ga_544" reaction="R_EAR141x">
- <gene reference="STM1700"/>
- </geneAssociation>
- <geneAssociation id="ga_545" reaction="R_EAR141y">
- <gene reference="STM1700"/>
- </geneAssociation>
- <geneAssociation id="ga_546" reaction="R_EAR160x">
- <gene reference="STM1700"/>
- </geneAssociation>
- <geneAssociation id="ga_547" reaction="R_EAR160y">
- <gene reference="STM1700"/>
- </geneAssociation>
- <geneAssociation id="ga_548" reaction="R_EAR161x">
- <gene reference="STM1700"/>
- </geneAssociation>
- <geneAssociation id="ga_549" reaction="R_EAR161y">
- <gene reference="STM1700"/>
- </geneAssociation>
- <geneAssociation id="ga_550" reaction="R_EAR180x">
- <gene reference="STM1700"/>
- </geneAssociation>
- <geneAssociation id="ga_551" reaction="R_EAR180y">
- <gene reference="STM1700"/>
- </geneAssociation>
- <geneAssociation id="ga_552" reaction="R_EAR181x">
- <gene reference="STM1700"/>
- </geneAssociation>
- <geneAssociation id="ga_553" reaction="R_EAR181y">
- <gene reference="STM1700"/>
- </geneAssociation>
- <geneAssociation id="ga_554" reaction="R_EAR40x">
- <gene reference="STM1700"/>
- </geneAssociation>
- <geneAssociation id="ga_555" reaction="R_EAR40y">
- <gene reference="STM1700"/>
- </geneAssociation>
- <geneAssociation id="ga_556" reaction="R_EAR60x">
- <gene reference="STM1700"/>
- </geneAssociation>
- <geneAssociation id="ga_557" reaction="R_EAR60y">
- <gene reference="STM1700"/>
- </geneAssociation>
- <geneAssociation id="ga_558" reaction="R_EAR80x">
- <gene reference="STM1700"/>
- </geneAssociation>
- <geneAssociation id="ga_559" reaction="R_EAR80y">
- <gene reference="STM1700"/>
- </geneAssociation>
- <geneAssociation id="ga_560" reaction="R_ECA4OALpp">
- <gene reference="STM3713"/>
- </geneAssociation>
- <geneAssociation id="ga_561" reaction="R_ECAP1pp">
- <and>
- <gene reference="STM3928"/>
- <gene reference="STM3919"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_562" reaction="R_ECAP2pp">
- <and>
- <gene reference="STM3928"/>
- <gene reference="STM3919"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_563" reaction="R_ECAP3pp">
- <and>
- <gene reference="STM3928"/>
- <gene reference="STM3919"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_564" reaction="R_ECAtpp">
- <gene reference="STM3926"/>
- </geneAssociation>
- <geneAssociation id="ga_565" reaction="R_ECOAH1">
- <or>
- <gene reference="STM3983"/>
- <gene reference="STM2388"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_566" reaction="R_ECOAH2">
- <or>
- <gene reference="STM3983"/>
- <gene reference="STM2388"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_567" reaction="R_ECOAH3">
- <or>
- <gene reference="STM2388"/>
- <gene reference="STM3983"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_568" reaction="R_ECOAH4">
- <or>
- <gene reference="STM3983"/>
- <gene reference="STM2388"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_569" reaction="R_ECOAH5">
- <or>
- <gene reference="STM3983"/>
- <gene reference="STM2388"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_570" reaction="R_ECOAH6">
- <or>
- <gene reference="STM3983"/>
- <gene reference="STM2388"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_571" reaction="R_ECOAH7">
- <or>
- <gene reference="STM3983"/>
- <gene reference="STM2388"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_572" reaction="R_ECOAH8">
- <or>
- <gene reference="STM3983"/>
- <gene reference="STM2388"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_573" reaction="R_EDA">
- <gene reference="STM1884"/>
- </geneAssociation>
- <geneAssociation id="ga_574" reaction="R_EDD">
- <gene reference="STM1885"/>
- </geneAssociation>
- <geneAssociation id="ga_575" reaction="R_EDTXS1">
- <gene reference="STM1155"/>
- </geneAssociation>
- <geneAssociation id="ga_576" reaction="R_EDTXS2">
- <gene reference="STM1889"/>
- </geneAssociation>
- <geneAssociation id="ga_577" reaction="R_EDTXS3">
- <gene reference="STM2401"/>
- </geneAssociation>
- <geneAssociation id="ga_578" reaction="R_EDTXS4">
- <gene reference="STM1889"/>
- </geneAssociation>
- <geneAssociation id="ga_579" reaction="R_ENO">
- <gene reference="STM2952"/>
- </geneAssociation>
- <geneAssociation id="ga_580" reaction="R_ENTCS">
- <gene reference="STM0584"/>
- </geneAssociation>
- <geneAssociation id="ga_581" reaction="R_ETHAAL">
- <and>
- <gene reference="STM2457"/>
- <gene reference="STM2458"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_582" reaction="R_ETHAt2pp">
- <gene reference="STM2460"/>
- </geneAssociation>
- <geneAssociation id="ga_583" reaction="R_ETHAtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_584" reaction="R_ETHSO3tex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_585" reaction="R_ETOHtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_586" reaction="R_F6PA">
- <gene reference="STM4109"/>
- </geneAssociation>
- <geneAssociation id="ga_587" reaction="R_F6PP">
- <or>
- <gene reference="STM0840"/>
- <gene reference="STM0842"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_588" reaction="R_F6Pt6_2pp">
- <gene reference="STM3787"/>
- </geneAssociation>
- <geneAssociation id="ga_589" reaction="R_F6Ptex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_590" reaction="R_FA100ACPHi">
- <gene reference="STM0403"/>
- </geneAssociation>
- <geneAssociation id="ga_591" reaction="R_FA120ACPHi">
- <gene reference="STM0403"/>
- </geneAssociation>
- <geneAssociation id="ga_592" reaction="R_FA140ACPHi">
- <gene reference="STM0403"/>
- </geneAssociation>
- <geneAssociation id="ga_593" reaction="R_FA141ACPHi">
- <gene reference="STM0403"/>
- </geneAssociation>
- <geneAssociation id="ga_594" reaction="R_FA160ACPHi">
- <gene reference="STM0403"/>
- </geneAssociation>
- <geneAssociation id="ga_595" reaction="R_FA161ACPHi">
- <gene reference="STM0403"/>
- </geneAssociation>
- <geneAssociation id="ga_596" reaction="R_FA80ACPHi">
- <gene reference="STM0403"/>
- </geneAssociation>
- <geneAssociation id="ga_597" reaction="R_FACOAE100">
- <gene reference="STM0464"/>
- </geneAssociation>
- <geneAssociation id="ga_598" reaction="R_FACOAE120">
- <gene reference="STM0464"/>
- </geneAssociation>
- <geneAssociation id="ga_599" reaction="R_FACOAE140">
- <gene reference="STM0464"/>
- </geneAssociation>
- <geneAssociation id="ga_600" reaction="R_FACOAE141">
- <gene reference="STM0464"/>
- </geneAssociation>
- <geneAssociation id="ga_601" reaction="R_FACOAE160">
- <gene reference="STM0464"/>
- </geneAssociation>
- <geneAssociation id="ga_602" reaction="R_FACOAE161">
- <gene reference="STM0464"/>
- </geneAssociation>
- <geneAssociation id="ga_603" reaction="R_FACOAE180">
- <gene reference="STM0464"/>
- </geneAssociation>
- <geneAssociation id="ga_604" reaction="R_FACOAE181">
- <gene reference="STM0464"/>
- </geneAssociation>
- <geneAssociation id="ga_605" reaction="R_FACOAE60">
- <gene reference="STM0464"/>
- </geneAssociation>
- <geneAssociation id="ga_606" reaction="R_FACOAE80">
- <gene reference="STM0464"/>
- </geneAssociation>
- <geneAssociation id="ga_607" reaction="R_FACOAL100t2pp">
- <or>
- <gene reference="STM1818"/>
- <gene reference="STM1350"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_608" reaction="R_FACOAL120t2pp">
- <or>
- <gene reference="STM1350"/>
- <gene reference="STM1818"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_609" reaction="R_FACOAL140t2pp">
- <or>
- <gene reference="STM1818"/>
- <gene reference="STM1350"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_610" reaction="R_FACOAL141t2pp">
- <or>
- <gene reference="STM1350"/>
- <gene reference="STM1818"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_611" reaction="R_FACOAL160t2pp">
- <or>
- <gene reference="STM1350"/>
- <gene reference="STM1818"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_612" reaction="R_FACOAL161t2pp">
- <or>
- <gene reference="STM1818"/>
- <gene reference="STM1350"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_613" reaction="R_FACOAL180t2pp">
- <or>
- <gene reference="STM1818"/>
- <gene reference="STM1350"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_614" reaction="R_FACOAL181t2pp">
- <or>
- <gene reference="STM1818"/>
- <gene reference="STM1350"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_615" reaction="R_FACOAL60t2pp">
- <or>
- <gene reference="STM1818"/>
- <gene reference="STM1350"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_616" reaction="R_FACOAL80t2pp">
- <or>
- <gene reference="STM1818"/>
- <gene reference="STM1350"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_617" reaction="R_FADRx">
- <gene reference="STM3979"/>
- </geneAssociation>
- <geneAssociation id="ga_618" reaction="R_FADRx2">
- <and>
- <gene reference="STM2947"/>
- <gene reference="STM2948"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_619" reaction="R_FALDtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_620" reaction="R_FALDtpp">
- <gene reference="s0001"/>
- </geneAssociation>
- <geneAssociation id="ga_621" reaction="R_FALGTHLs">
- <gene reference="s0001"/>
- </geneAssociation>
- <geneAssociation id="ga_622" reaction="R_FBA">
- <or>
- <gene reference="STM2141"/>
- <gene reference="STM3068"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_623" reaction="R_FBP">
- <or>
- <gene reference="STM4085"/>
- <gene reference="STM4415"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_624" reaction="R_FCI">
- <gene reference="STM2976"/>
- </geneAssociation>
- <geneAssociation id="ga_625" reaction="R_FCLK">
- <gene reference="STM2977"/>
- </geneAssociation>
- <geneAssociation id="ga_626" reaction="R_FCLPA">
- <or>
- <gene reference="STM2974"/>
- <gene reference="STM2916"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_627" reaction="R_FCLT">
- <gene reference="STM0489"/>
- </geneAssociation>
- <geneAssociation id="ga_628" reaction="R_FDH4pp">
- <or>
- <and>
- <gene reference="STM4035"/>
- <gene reference="STM4036"/>
- <gene reference="STM4037"/>
- </and>
- <and>
- <gene reference="STM1570"/>
- <gene reference="STM1569"/>
- <gene reference="STM1568"/>
- </and>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_629" reaction="R_FDH5pp">
- <or>
- <and>
- <gene reference="STM1570"/>
- <gene reference="STM1569"/>
- <gene reference="STM1568"/>
- </and>
- <and>
- <gene reference="STM4035"/>
- <gene reference="STM4036"/>
- <gene reference="STM4037"/>
- </and>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_630" reaction="R_FE2t2pp">
- <gene reference="STM2408"/>
- </geneAssociation>
- <geneAssociation id="ga_631" reaction="R_FE2tex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_632" reaction="R_FE2tpp">
- <gene reference="STM3190"/>
- </geneAssociation>
- <geneAssociation id="ga_633" reaction="R_FE3DHBZSabcpp">
- <and>
- <gene reference="STM0594"/>
- <gene reference="STM0590"/>
- <gene reference="STM0592"/>
- <gene reference="STM0591"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_634" reaction="R_FE3DHBZStonex">
- <and>
- <gene reference="STM2199"/>
- <gene reference="STM1737"/>
- <gene reference="STM3158"/>
- <gene reference="STM3159"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_635" reaction="R_FE3HOXexs">
- <gene reference="s0001"/>
- </geneAssociation>
- <geneAssociation id="ga_636" reaction="R_FE3HOXtonex">
- <and>
- <gene reference="STM0191"/>
- <gene reference="STM1737"/>
- <gene reference="STM3158"/>
- <gene reference="STM3159"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_637" reaction="R_FE3Ri">
- <gene reference="STM3979"/>
- </geneAssociation>
- <geneAssociation id="ga_638" reaction="R_FE3tex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_639" reaction="R_FECRMabcpp">
- <and>
- <gene reference="STM0194"/>
- <gene reference="STM0192"/>
- <gene reference="STM0193"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_640" reaction="R_FECRMexs">
- <gene reference="s0001"/>
- </geneAssociation>
- <geneAssociation id="ga_641" reaction="R_FECRMtonex">
- <and>
- <gene reference="STM0191"/>
- <gene reference="STM1737"/>
- <gene reference="STM3158"/>
- <gene reference="STM3159"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_642" reaction="R_FEENTERabcpp">
- <and>
- <gene reference="STM0594"/>
- <gene reference="STM0590"/>
- <gene reference="STM0592"/>
- <gene reference="STM0591"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_643" reaction="R_FEENTERexs">
- <gene reference="s0001"/>
- </geneAssociation>
- <geneAssociation id="ga_644" reaction="R_FEENTERtonex">
- <and>
- <gene reference="STM0585"/>
- <gene reference="STM1737"/>
- <gene reference="STM3158"/>
- <gene reference="STM3159"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_645" reaction="R_FEENTERtpp">
- <gene reference="STM0593"/>
- </geneAssociation>
- <geneAssociation id="ga_646" reaction="R_FEOXAMabcpp">
- <and>
- <gene reference="STM0194"/>
- <gene reference="STM0192"/>
- <gene reference="STM0193"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_647" reaction="R_FEOXAMexs">
- <gene reference="s0001"/>
- </geneAssociation>
- <geneAssociation id="ga_648" reaction="R_FEOXAMtonex">
- <and>
- <gene reference="STM0191"/>
- <gene reference="STM1737"/>
- <gene reference="STM3158"/>
- <gene reference="STM3159"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_649" reaction="R_FEROpp">
- <gene reference="STM0168"/>
- </geneAssociation>
- <geneAssociation id="ga_650" reaction="R_FHL">
- <and>
- <gene reference="STM4285"/>
- <gene reference="STM2847"/>
- <gene reference="STM2848"/>
- <gene reference="STM2849"/>
- <gene reference="STM2850"/>
- <gene reference="STM2851"/>
- <gene reference="STM2852"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_651" reaction="R_FLDR">
- <or>
- <and>
- <gene reference="STM0694"/>
- <gene reference="STM4084"/>
- </and>
- <and>
- <gene reference="STM3045"/>
- <gene reference="STM4084"/>
- </and>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_652" reaction="R_FLVR">
- <or>
- <and>
- <gene reference="STM2947"/>
- <gene reference="STM2948"/>
- </and>
- <gene reference="STM3979"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_653" reaction="R_FLVRx">
- <gene reference="STM3979"/>
- </geneAssociation>
- <geneAssociation id="ga_654" reaction="R_FMETTRS">
- <gene reference="STM3407"/>
- </geneAssociation>
- <geneAssociation id="ga_655" reaction="R_FMNAT">
- <gene reference="STM0045"/>
- </geneAssociation>
- <geneAssociation id="ga_656" reaction="R_FMNRx">
- <gene reference="STM3979"/>
- </geneAssociation>
- <geneAssociation id="ga_657" reaction="R_FMNRx2">
- <or>
- <and>
- <gene reference="STM2947"/>
- <gene reference="STM2948"/>
- </and>
- <gene reference="STM3979"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_658" reaction="R_FORt2pp">
- <gene reference="STM0974"/>
- </geneAssociation>
- <geneAssociation id="ga_659" reaction="R_FORtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_660" reaction="R_FORtppi">
- <gene reference="STM0974"/>
- </geneAssociation>
- <geneAssociation id="ga_661" reaction="R_FRD2">
- <and>
- <gene reference="STM4340"/>
- <gene reference="STM4341"/>
- <gene reference="STM4342"/>
- <gene reference="STM4343"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_662" reaction="R_FRD3">
- <and>
- <gene reference="STM4340"/>
- <gene reference="STM4341"/>
- <gene reference="STM4342"/>
- <gene reference="STM4343"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_663" reaction="R_FRUK">
- <gene reference="STM2205"/>
- </geneAssociation>
- <geneAssociation id="ga_664" reaction="R_FRULYStex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_665" reaction="R_FRUURtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_666" reaction="R_FRUpts2pp">
- <and>
- <gene reference="STM1830"/>
- <gene reference="STM1831"/>
- <gene reference="STM1832"/>
- <gene reference="STM2431"/>
- <gene reference="STM2432"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_667" reaction="R_FRUptspp">
- <and>
- <gene reference="STM2204"/>
- <gene reference="STM2206"/>
- <gene reference="STM2431"/>
- <gene reference="STM2432"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_668" reaction="R_FRUtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_669" reaction="R_FTHFD">
- <gene reference="STM1756"/>
- </geneAssociation>
- <geneAssociation id="ga_670" reaction="R_FUCtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_671" reaction="R_FUCtpp">
- <gene reference="s0001"/>
- </geneAssociation>
- <geneAssociation id="ga_672" reaction="R_FUM">
- <or>
- <gene reference="STM1468"/>
- <gene reference="STM4300"/>
- <gene reference="STM1469"/>
- <and>
- <gene reference="STM0761"/>
- <gene reference="STM0762"/>
- </and>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_673" reaction="R_FUMt2_2pp">
- <gene reference="STM3614"/>
- </geneAssociation>
- <geneAssociation id="ga_674" reaction="R_FUMtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_675" reaction="R_G1PACT">
- <gene reference="STM3862"/>
- </geneAssociation>
- <geneAssociation id="ga_676" reaction="R_G1PPpp">
- <gene reference="STM1117"/>
- </geneAssociation>
- <geneAssociation id="ga_677" reaction="R_G1PTT">
- <or>
- <gene reference="STM3923"/>
- <gene reference="STM2095"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_678" reaction="R_G1Ptex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_679" reaction="R_G1SAT">
- <gene reference="STM0202"/>
- </geneAssociation>
- <geneAssociation id="ga_680" reaction="R_G2PPpp">
- <gene reference="STM4249"/>
- </geneAssociation>
- <geneAssociation id="ga_681" reaction="R_G3PAT120">
- <gene reference="STM4235"/>
- </geneAssociation>
- <geneAssociation id="ga_682" reaction="R_G3PAT140">
- <gene reference="STM4235"/>
- </geneAssociation>
- <geneAssociation id="ga_683" reaction="R_G3PAT141">
- <gene reference="STM4235"/>
- </geneAssociation>
- <geneAssociation id="ga_684" reaction="R_G3PAT160">
- <gene reference="STM4235"/>
- </geneAssociation>
- <geneAssociation id="ga_685" reaction="R_G3PAT161">
- <gene reference="STM4235"/>
- </geneAssociation>
- <geneAssociation id="ga_686" reaction="R_G3PAT180">
- <gene reference="STM4235"/>
- </geneAssociation>
- <geneAssociation id="ga_687" reaction="R_G3PAT181">
- <gene reference="STM4235"/>
- </geneAssociation>
- <geneAssociation id="ga_688" reaction="R_G3PCabcpp">
- <and>
- <gene reference="STM3556"/>
- <gene reference="STM3557"/>
- <gene reference="STM3554"/>
- <gene reference="STM3555"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_689" reaction="R_G3PCtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_690" reaction="R_G3PD2">
- <gene reference="STM3700"/>
- </geneAssociation>
- <geneAssociation id="ga_691" reaction="R_G3PD5">
- <or>
- <and>
- <gene reference="STM2284"/>
- <gene reference="STM2285"/>
- <gene reference="STM2286"/>
- </and>
- <gene reference="STM3526"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_692" reaction="R_G3PD6">
- <and>
- <gene reference="STM2284"/>
- <gene reference="STM2285"/>
- <gene reference="STM2286"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_693" reaction="R_G3PD7">
- <and>
- <gene reference="STM2284"/>
- <gene reference="STM2285"/>
- <gene reference="STM2286"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_694" reaction="R_G3PEabcpp">
- <and>
- <gene reference="STM3556"/>
- <gene reference="STM3557"/>
- <gene reference="STM3554"/>
- <gene reference="STM3555"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_695" reaction="R_G3PEtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_696" reaction="R_G3PGabcpp">
- <and>
- <gene reference="STM3556"/>
- <gene reference="STM3557"/>
- <gene reference="STM3554"/>
- <gene reference="STM3555"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_697" reaction="R_G3PGtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_698" reaction="R_G3PIabcpp">
- <and>
- <gene reference="STM3556"/>
- <gene reference="STM3557"/>
- <gene reference="STM3554"/>
- <gene reference="STM3555"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_699" reaction="R_G3PItex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_700" reaction="R_G3PSabcpp">
- <and>
- <gene reference="STM3556"/>
- <gene reference="STM3557"/>
- <gene reference="STM3554"/>
- <gene reference="STM3555"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_701" reaction="R_G3PStex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_702" reaction="R_G3PT">
- <or>
- <gene reference="STM0840"/>
- <gene reference="STM0842"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_703" reaction="R_G5SADs">
- <gene reference="s0001"/>
- </geneAssociation>
- <geneAssociation id="ga_704" reaction="R_G5SD">
- <gene reference="STM0322"/>
- </geneAssociation>
- <geneAssociation id="ga_705" reaction="R_G6PDA">
- <gene reference="STM0684"/>
- </geneAssociation>
- <geneAssociation id="ga_706" reaction="R_G6PDH2r">
- <gene reference="STM1886"/>
- </geneAssociation>
- <geneAssociation id="ga_707" reaction="R_G6PP">
- <or>
- <gene reference="STM0840"/>
- <gene reference="STM0842"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_708" reaction="R_G6Pt6_2pp">
- <gene reference="STM3787"/>
- </geneAssociation>
- <geneAssociation id="ga_709" reaction="R_G6Ptex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_710" reaction="R_GAL1PPpp">
- <gene reference="STM1117"/>
- </geneAssociation>
- <geneAssociation id="ga_711" reaction="R_GAL1Ptex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_712" reaction="R_GALBDtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_713" reaction="R_GALCTNLtex">
- <or>
- <gene reference="STM2267"/>
- <gene reference="STM1473"/>
- <gene reference="STM0999"/>
- <gene reference="STM0320"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_714" reaction="R_GALCTNt2pp">
- <gene reference="STM3827"/>
- </geneAssociation>
- <geneAssociation id="ga_715" reaction="R_GALCTNtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_716" reaction="R_GALCTt2rpp">
- <gene reference="STM2962"/>
- </geneAssociation>
- <geneAssociation id="ga_717" reaction="R_GALCTtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_718" reaction="R_GALKr">
- <or>
- <gene reference="STM0774"/>
- <gene reference="STM2101"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_719" reaction="R_GALM2pp">
- <gene reference="STM0773"/>
- </geneAssociation>
- <geneAssociation id="ga_720" reaction="R_GALS3">
- <gene reference="STM4298"/>
- </geneAssociation>
- <geneAssociation id="ga_721" reaction="R_GALT1">
- <gene reference="STM3719"/>
- </geneAssociation>
- <geneAssociation id="ga_722" reaction="R_GALTtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_723" reaction="R_GALURt2rpp">
- <gene reference="STM3134"/>
- </geneAssociation>
- <geneAssociation id="ga_724" reaction="R_GALURtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_725" reaction="R_GALUi">
- <and>
- <gene reference="STM1752"/>
- <gene reference="STM2098"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_726" reaction="R_GALabcpp">
- <and>
- <gene reference="STM2189"/>
- <gene reference="STM2190"/>
- <gene reference="STM2188"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_727" reaction="R_GALt2pp">
- <gene reference="STM3091"/>
- </geneAssociation>
- <geneAssociation id="ga_728" reaction="R_GALtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_729" reaction="R_GAM6Pt6_2pp">
- <gene reference="STM3787"/>
- </geneAssociation>
- <geneAssociation id="ga_730" reaction="R_GAMAN6Ptex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_731" reaction="R_GAMptspp">
- <and>
- <gene reference="STM1830"/>
- <gene reference="STM1831"/>
- <gene reference="STM1832"/>
- <gene reference="STM2431"/>
- <gene reference="STM2432"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_732" reaction="R_GAMtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_733" reaction="R_GAPD">
- <gene reference="STM1290"/>
- </geneAssociation>
- <geneAssociation id="ga_734" reaction="R_GARFT">
- <gene reference="STM2500"/>
- </geneAssociation>
- <geneAssociation id="ga_735" reaction="R_GART">
- <gene reference="STM1883"/>
- </geneAssociation>
- <geneAssociation id="ga_736" reaction="R_GBBTNtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_737" reaction="R_GDMANE">
- <gene reference="STM2108"/>
- </geneAssociation>
- <geneAssociation id="ga_738" reaction="R_GDPDPK">
- <or>
- <gene reference="STM2956"/>
- <gene reference="STM3742"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_739" reaction="R_GDPMNH">
- <gene reference="STM2107"/>
- </geneAssociation>
- <geneAssociation id="ga_740" reaction="R_GDPMNP">
- <gene reference="STM2477"/>
- </geneAssociation>
- <geneAssociation id="ga_741" reaction="R_GDPtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- <gene reference="STM0999"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_742" reaction="R_GF6PTA">
- <gene reference="STM3861"/>
- </geneAssociation>
- <geneAssociation id="ga_743" reaction="R_GHMT2r">
- <gene reference="STM2555"/>
- </geneAssociation>
- <geneAssociation id="ga_744" reaction="R_GK1">
- <gene reference="STM3740"/>
- </geneAssociation>
- <geneAssociation id="ga_745" reaction="R_GLBRAN2">
- <gene reference="STM3538"/>
- </geneAssociation>
- <geneAssociation id="ga_746" reaction="R_GLCATr">
- <gene reference="STM0472"/>
- </geneAssociation>
- <geneAssociation id="ga_747" reaction="R_GLCDpp">
- <gene reference="STM0169"/>
- </geneAssociation>
- <geneAssociation id="ga_748" reaction="R_GLCNt2rpp">
- <or>
- <gene reference="STM3512"/>
- <gene reference="STM4482"/>
- <gene reference="STM3541"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_749" reaction="R_GLCNtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_750" reaction="R_GLCP">
- <or>
- <gene reference="STM3534"/>
- <gene reference="STM3514"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_751" reaction="R_GLCP2">
- <or>
- <gene reference="STM3514"/>
- <gene reference="STM3534"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_752" reaction="R_GLCRAL">
- <gene reference="STM3249"/>
- </geneAssociation>
- <geneAssociation id="ga_753" reaction="R_GLCRD">
- <or>
- <gene reference="STM2960"/>
- <gene reference="STM2961"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_754" reaction="R_GLCRt2rpp">
- <gene reference="STM2962"/>
- </geneAssociation>
- <geneAssociation id="ga_755" reaction="R_GLCRtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_756" reaction="R_GLCS1">
- <gene reference="STM3535"/>
- </geneAssociation>
- <geneAssociation id="ga_757" reaction="R_GLCTR1">
- <gene reference="STM3722"/>
- </geneAssociation>
- <geneAssociation id="ga_758" reaction="R_GLCTR2">
- <gene reference="STM3718"/>
- </geneAssociation>
- <geneAssociation id="ga_759" reaction="R_GLCTR3">
- <gene reference="STM3717"/>
- </geneAssociation>
- <geneAssociation id="ga_760" reaction="R_GLCUR1Ptex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_761" reaction="R_GLCURt2rpp">
- <or>
- <gene reference="STM3134"/>
- <gene reference="STM0161"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_762" reaction="R_GLCURtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_763" reaction="R_GLCabcpp">
- <and>
- <gene reference="STM2189"/>
- <gene reference="STM2190"/>
- <gene reference="STM2188"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_764" reaction="R_GLCptspp">
- <or>
- <and>
- <gene reference="STM2433"/>
- <gene reference="STM1203"/>
- <gene reference="STM2431"/>
- <gene reference="STM2432"/>
- </and>
- <and>
- <gene reference="STM1830"/>
- <gene reference="STM1831"/>
- <gene reference="STM1832"/>
- <gene reference="STM2431"/>
- <gene reference="STM2432"/>
- </and>
- <and>
- <gene reference="STM2433"/>
- <gene reference="STM2431"/>
- <gene reference="STM2432"/>
- </and>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_765" reaction="R_GLCt2pp">
- <gene reference="STM3091"/>
- </geneAssociation>
- <geneAssociation id="ga_766" reaction="R_GLCtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_767" reaction="R_GLCtexi">
- <gene reference="STM4231"/>
- </geneAssociation>
- <geneAssociation id="ga_768" reaction="R_GLDBRAN2">
- <gene reference="STM3537"/>
- </geneAssociation>
- <geneAssociation id="ga_769" reaction="R_GLGC">
- <gene reference="STM3536"/>
- </geneAssociation>
- <geneAssociation id="ga_770" reaction="R_GLNS">
- <gene reference="STM4007"/>
- </geneAssociation>
- <geneAssociation id="ga_771" reaction="R_GLNTRS">
- <gene reference="STM0686"/>
- </geneAssociation>
- <geneAssociation id="ga_772" reaction="R_GLNabcpp">
- <and>
- <gene reference="STM0830"/>
- <gene reference="STM0829"/>
- <gene reference="STM0828"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_773" reaction="R_GLNtex">
- <or>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- <gene reference="STM0320"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_774" reaction="R_GLU5K">
- <gene reference="STM0321"/>
- </geneAssociation>
- <geneAssociation id="ga_775" reaction="R_GLUCYS">
- <gene reference="STM2818"/>
- </geneAssociation>
- <geneAssociation id="ga_776" reaction="R_GLUDy">
- <gene reference="STM1299"/>
- </geneAssociation>
- <geneAssociation id="ga_777" reaction="R_GLUN">
- <gene reference="STM1525"/>
- </geneAssociation>
- <geneAssociation id="ga_778" reaction="R_GLUNpp">
- <gene reference="STM3106"/>
- </geneAssociation>
- <geneAssociation id="ga_779" reaction="R_GLUPRT">
- <gene reference="STM2362"/>
- </geneAssociation>
- <geneAssociation id="ga_780" reaction="R_GLUR">
- <gene reference="STM4131"/>
- </geneAssociation>
- <geneAssociation id="ga_781" reaction="R_GLUSy">
- <and>
- <gene reference="STM3330"/>
- <gene reference="STM3331"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_782" reaction="R_GLUTRR">
- <gene reference="STM1777"/>
- </geneAssociation>
- <geneAssociation id="ga_783" reaction="R_GLUTRS">
- <gene reference="STM2415"/>
- </geneAssociation>
- <geneAssociation id="ga_784" reaction="R_GLUabcpp">
- <and>
- <gene reference="STM0665"/>
- <gene reference="STM0664"/>
- <gene reference="STM0663"/>
- <gene reference="STM0662"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_785" reaction="R_GLUt2rpp">
- <gene reference="STM4283"/>
- </geneAssociation>
- <geneAssociation id="ga_786" reaction="R_GLUt4pp">
- <gene reference="STM3746"/>
- </geneAssociation>
- <geneAssociation id="ga_787" reaction="R_GLUtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_788" reaction="R_GLXCL">
- <gene reference="STM0517"/>
- </geneAssociation>
- <geneAssociation id="ga_789" reaction="R_GLYALDtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_790" reaction="R_GLYALDtpp">
- <gene reference="STM4087"/>
- </geneAssociation>
- <geneAssociation id="ga_791" reaction="R_GLYAT">
- <gene reference="STM3709"/>
- </geneAssociation>
- <geneAssociation id="ga_792" reaction="R_GLYBabcpp">
- <and>
- <gene reference="STM2162"/>
- <gene reference="STM2163"/>
- <gene reference="STM2164"/>
- <gene reference="STM2165"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_793" reaction="R_GLYBtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_794" reaction="R_GLYC2Ptex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_795" reaction="R_GLYC3Pabcpp">
- <and>
- <gene reference="STM3556"/>
- <gene reference="STM3557"/>
- <gene reference="STM3554"/>
- <gene reference="STM3555"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_796" reaction="R_GLYC3Pt6pp">
- <gene reference="STM2283"/>
- </geneAssociation>
- <geneAssociation id="ga_797" reaction="R_GLYC3Ptex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_798" reaction="R_GLYCAt2rpp">
- <gene reference="STM2962"/>
- </geneAssociation>
- <geneAssociation id="ga_799" reaction="R_GLYCAtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_800" reaction="R_GLYCDx">
- <or>
- <gene reference="STM4108"/>
- <gene reference="STM3529"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_801" reaction="R_GLYCK">
- <or>
- <gene reference="STM2959"/>
- <gene reference="STM2492"/>
- <gene reference="STM3247"/>
- <gene reference="STM0525"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_802" reaction="R_GLYCK2">
- <gene reference="STM3247"/>
- </geneAssociation>
- <geneAssociation id="ga_803" reaction="R_GLYCL">
- <and>
- <gene reference="STM3054"/>
- <gene reference="STM3053"/>
- <gene reference="STM3055"/>
- <gene reference="STM0154"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_804" reaction="R_GLYCLTDx">
- <or>
- <gene reference="STM3646"/>
- <gene reference="STM1135"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_805" reaction="R_GLYCLTDy">
- <or>
- <gene reference="STM3646"/>
- <gene reference="STM1135"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_806" reaction="R_GLYCLTt2rpp">
- <gene reference="STM3692"/>
- </geneAssociation>
- <geneAssociation id="ga_807" reaction="R_GLYCLTt4pp">
- <gene reference="STM4273"/>
- </geneAssociation>
- <geneAssociation id="ga_808" reaction="R_GLYCLTtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_809" reaction="R_GLYCTO2">
- <gene reference="STM1620"/>
- </geneAssociation>
- <geneAssociation id="ga_810" reaction="R_GLYCTO3">
- <gene reference="STM1620"/>
- </geneAssociation>
- <geneAssociation id="ga_811" reaction="R_GLYCTO4">
- <gene reference="STM1620"/>
- </geneAssociation>
- <geneAssociation id="ga_812" reaction="R_GLYCtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_813" reaction="R_GLYCtpp">
- <or>
- <gene reference="s0001"/>
- <gene reference="STM4087"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_814" reaction="R_GLYK">
- <gene reference="STM4086"/>
- </geneAssociation>
- <geneAssociation id="ga_815" reaction="R_GLYOX">
- <gene reference="STM0261"/>
- </geneAssociation>
- <geneAssociation id="ga_816" reaction="R_GLYTRS">
- <and>
- <gene reference="STM3655"/>
- <gene reference="STM3656"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_817" reaction="R_GLYt2pp">
- <gene reference="STM4398"/>
- </geneAssociation>
- <geneAssociation id="ga_818" reaction="R_GLYtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_819" reaction="R_GMAND">
- <gene reference="STM2109"/>
- </geneAssociation>
- <geneAssociation id="ga_820" reaction="R_GMHEPAT">
- <gene reference="STM3200"/>
- </geneAssociation>
- <geneAssociation id="ga_821" reaction="R_GMHEPK">
- <gene reference="STM3200"/>
- </geneAssociation>
- <geneAssociation id="ga_822" reaction="R_GMHEPPA">
- <gene reference="STM0248"/>
- </geneAssociation>
- <geneAssociation id="ga_823" reaction="R_GMPR">
- <gene reference="STM0141"/>
- </geneAssociation>
- <geneAssociation id="ga_824" reaction="R_GMPS2">
- <gene reference="STM2510"/>
- </geneAssociation>
- <geneAssociation id="ga_825" reaction="R_GMPtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_826" reaction="R_GND">
- <gene reference="STM2081"/>
- </geneAssociation>
- <geneAssociation id="ga_827" reaction="R_GNK">
- <or>
- <gene reference="STM4485"/>
- <gene reference="STM3542"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_828" reaction="R_GOFUCR">
- <gene reference="STM2108"/>
- </geneAssociation>
- <geneAssociation id="ga_829" reaction="R_GPDDA1">
- <gene reference="STM3553"/>
- </geneAssociation>
- <geneAssociation id="ga_830" reaction="R_GPDDA1pp">
- <gene reference="STM2282"/>
- </geneAssociation>
- <geneAssociation id="ga_831" reaction="R_GPDDA2">
- <gene reference="STM3553"/>
- </geneAssociation>
- <geneAssociation id="ga_832" reaction="R_GPDDA2pp">
- <gene reference="STM2282"/>
- </geneAssociation>
- <geneAssociation id="ga_833" reaction="R_GPDDA3">
- <gene reference="STM3553"/>
- </geneAssociation>
- <geneAssociation id="ga_834" reaction="R_GPDDA3pp">
- <gene reference="STM2282"/>
- </geneAssociation>
- <geneAssociation id="ga_835" reaction="R_GPDDA4">
- <gene reference="STM3553"/>
- </geneAssociation>
- <geneAssociation id="ga_836" reaction="R_GPDDA4pp">
- <gene reference="STM2282"/>
- </geneAssociation>
- <geneAssociation id="ga_837" reaction="R_GPDDA5">
- <gene reference="STM3553"/>
- </geneAssociation>
- <geneAssociation id="ga_838" reaction="R_GPDDA5pp">
- <gene reference="STM2282"/>
- </geneAssociation>
- <geneAssociation id="ga_839" reaction="R_GRTT">
- <gene reference="STM0423"/>
- </geneAssociation>
- <geneAssociation id="ga_840" reaction="R_GRXR">
- <or>
- <gene reference="STM3702"/>
- <gene reference="STM0872"/>
- <gene reference="STM1433"/>
- <gene reference="STM1165"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_841" reaction="R_GSNK">
- <gene reference="STM0491"/>
- </geneAssociation>
- <geneAssociation id="ga_842" reaction="R_GSNt2pp">
- <gene reference="STM3113"/>
- </geneAssociation>
- <geneAssociation id="ga_843" reaction="R_GSNtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_844" reaction="R_GSPMDA">
- <gene reference="STM3139"/>
- </geneAssociation>
- <geneAssociation id="ga_845" reaction="R_GSPMDS">
- <gene reference="STM3139"/>
- </geneAssociation>
- <geneAssociation id="ga_846" reaction="R_GTHOXtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_847" reaction="R_GTHOr">
- <gene reference="STM3597"/>
- </geneAssociation>
- <geneAssociation id="ga_848" reaction="R_GTHRDHpp">
- <gene reference="STM3551"/>
- </geneAssociation>
- <geneAssociation id="ga_849" reaction="R_GTHRDabc2pp">
- <and>
- <gene reference="STM0956"/>
- <gene reference="STM0957"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_850" reaction="R_GTHRDabcpp">
- <and>
- <gene reference="STM0848"/>
- <gene reference="STM0849"/>
- <gene reference="STM0850"/>
- <gene reference="STM0851"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_851" reaction="R_GTHRDtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_852" reaction="R_GTHS">
- <gene reference="STM3095"/>
- </geneAssociation>
- <geneAssociation id="ga_853" reaction="R_GTPCI">
- <gene reference="STM2193"/>
- </geneAssociation>
- <geneAssociation id="ga_854" reaction="R_GTPCII2">
- <gene reference="STM1711"/>
- </geneAssociation>
- <geneAssociation id="ga_855" reaction="R_GTPDPDP">
- <gene reference="STM3913"/>
- </geneAssociation>
- <geneAssociation id="ga_856" reaction="R_GTPDPK">
- <gene reference="STM2956"/>
- </geneAssociation>
- <geneAssociation id="ga_857" reaction="R_GTPHs">
- <gene reference="s0001"/>
- </geneAssociation>
- <geneAssociation id="ga_858" reaction="R_GTPtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_859" reaction="R_GUAPRT">
- <or>
- <gene reference="STM0317"/>
- <gene reference="STM0170"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_860" reaction="R_GUAt2pp">
- <gene reference="STM3747"/>
- </geneAssociation>
- <geneAssociation id="ga_861" reaction="R_GUAtex">
- <gene reference="STM0413"/>
- </geneAssociation>
- <geneAssociation id="ga_862" reaction="R_H2O2tex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_863" reaction="R_H2Otex">
- <or>
- <gene reference="STM1473"/>
- <gene reference="STM0999"/>
- <gene reference="STM2267"/>
- <gene reference="STM0320"/>
- <gene reference="s0001"/>
- <gene reference="STM4016"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_864" reaction="R_H2Otpp">
- <gene reference="s0001"/>
- </geneAssociation>
- <geneAssociation id="ga_865" reaction="R_H2St1pp">
- <gene reference="s0001"/>
- </geneAssociation>
- <geneAssociation id="ga_866" reaction="R_H2Stex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_867" reaction="R_H2tex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_868" reaction="R_H2tpp">
- <gene reference="s0001"/>
- </geneAssociation>
- <geneAssociation id="ga_869" reaction="R_HACD1i">
- <or>
- <gene reference="STM3983"/>
- <gene reference="STM2388"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_870" reaction="R_HACD2i">
- <or>
- <gene reference="STM3983"/>
- <gene reference="STM2388"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_871" reaction="R_HACD3i">
- <or>
- <gene reference="STM2388"/>
- <gene reference="STM3983"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_872" reaction="R_HACD4i">
- <or>
- <gene reference="STM3983"/>
- <gene reference="STM2388"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_873" reaction="R_HACD5i">
- <or>
- <gene reference="STM3983"/>
- <gene reference="STM2388"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_874" reaction="R_HACD6i">
- <or>
- <gene reference="STM3983"/>
- <gene reference="STM2388"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_875" reaction="R_HACD7i">
- <or>
- <gene reference="STM3983"/>
- <gene reference="STM2388"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_876" reaction="R_HACD8i">
- <or>
- <gene reference="STM3983"/>
- <gene reference="STM2388"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_877" reaction="R_HBZOPT">
- <gene reference="STM4234"/>
- </geneAssociation>
- <geneAssociation id="ga_878" reaction="R_HCINNMtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_879" reaction="R_HCO3E">
- <gene reference="STM0171"/>
- </geneAssociation>
- <geneAssociation id="ga_880" reaction="R_HDCAtexi">
- <gene reference="STM2391"/>
- </geneAssociation>
- <geneAssociation id="ga_881" reaction="R_HDCEAtexi">
- <gene reference="STM2391"/>
- </geneAssociation>
- <geneAssociation id="ga_882" reaction="R_HDCOAI">
- <gene reference="STM3983"/>
- </geneAssociation>
- <geneAssociation id="ga_883" reaction="R_HEMEOS">
- <gene reference="STM0439"/>
- </geneAssociation>
- <geneAssociation id="ga_884" reaction="R_HEPK1">
- <gene reference="STM3721"/>
- </geneAssociation>
- <geneAssociation id="ga_885" reaction="R_HEPK2">
- <gene reference="STM3716"/>
- </geneAssociation>
- <geneAssociation id="ga_886" reaction="R_HEPT1">
- <gene reference="STM3712"/>
- </geneAssociation>
- <geneAssociation id="ga_887" reaction="R_HEPT2">
- <gene reference="STM3711"/>
- </geneAssociation>
- <geneAssociation id="ga_888" reaction="R_HEPT3">
- <gene reference="STM3723"/>
- </geneAssociation>
- <geneAssociation id="ga_889" reaction="R_HEPT4">
- <gene reference="STM3714"/>
- </geneAssociation>
- <geneAssociation id="ga_890" reaction="R_HETZK">
- <gene reference="STM2147"/>
- </geneAssociation>
- <geneAssociation id="ga_891" reaction="R_HEX1">
- <gene reference="STM2403"/>
- </geneAssociation>
- <geneAssociation id="ga_892" reaction="R_HEX7">
- <gene reference="STM0393"/>
- </geneAssociation>
- <geneAssociation id="ga_893" reaction="R_HG2abcpp">
- <gene reference="STM3576"/>
- </geneAssociation>
- <geneAssociation id="ga_894" reaction="R_HG2tex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_895" reaction="R_HISTD">
- <gene reference="STM2072"/>
- </geneAssociation>
- <geneAssociation id="ga_896" reaction="R_HISTP">
- <gene reference="STM2074"/>
- </geneAssociation>
- <geneAssociation id="ga_897" reaction="R_HISTRS">
- <gene reference="STM2522"/>
- </geneAssociation>
- <geneAssociation id="ga_898" reaction="R_HISabcpp">
- <and>
- <gene reference="STM2354"/>
- <gene reference="STM2352"/>
- <gene reference="STM2351"/>
- <gene reference="STM2353"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_899" reaction="R_HISt2rpp">
- <gene reference="STM0150"/>
- </geneAssociation>
- <geneAssociation id="ga_900" reaction="R_HIStex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_901" reaction="R_HMBS">
- <gene reference="STM3938"/>
- </geneAssociation>
- <geneAssociation id="ga_902" reaction="R_HMPK1">
- <or>
- <gene reference="STM2146"/>
- <gene reference="STM2435"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_903" reaction="R_HOMt2pp">
- <or>
- <gene reference="STM0832"/>
- <gene reference="STM3960"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_904" reaction="R_HOMtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_905" reaction="R_HPPK2">
- <gene reference="STM0183"/>
- </geneAssociation>
- <geneAssociation id="ga_906" reaction="R_HPPPNtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_907" reaction="R_HPYRI">
- <gene reference="STM0518"/>
- </geneAssociation>
- <geneAssociation id="ga_908" reaction="R_HPYRRx">
- <or>
- <gene reference="STM1135"/>
- <gene reference="STM3646"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_909" reaction="R_HPYRRy">
- <or>
- <gene reference="STM3646"/>
- <gene reference="STM1135"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_910" reaction="R_HSDy">
- <or>
- <gene reference="STM4101"/>
- <gene reference="STM0002"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_911" reaction="R_HSK">
- <gene reference="STM0003"/>
- </geneAssociation>
- <geneAssociation id="ga_912" reaction="R_HSST">
- <gene reference="STM4182"/>
- </geneAssociation>
- <geneAssociation id="ga_913" reaction="R_HSTPT">
- <gene reference="STM2073"/>
- </geneAssociation>
- <geneAssociation id="ga_914" reaction="R_HXAtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_915" reaction="R_HXPRT">
- <or>
- <gene reference="STM0317"/>
- <gene reference="STM0170"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_916" reaction="R_HYXNtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_917" reaction="R_Htex">
- <or>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- <gene reference="STM0320"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_918" reaction="R_ICDHyr">
- <gene reference="STM1238"/>
- </geneAssociation>
- <geneAssociation id="ga_919" reaction="R_ICHORS">
- <gene reference="STM2310"/>
- </geneAssociation>
- <geneAssociation id="ga_920" reaction="R_ICHORSi">
- <or>
- <gene reference="STM0595"/>
- <gene reference="STM2310"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_921" reaction="R_ICHORT">
- <gene reference="STM0597"/>
- </geneAssociation>
- <geneAssociation id="ga_922" reaction="R_ICL">
- <gene reference="STM4184"/>
- </geneAssociation>
- <geneAssociation id="ga_923" reaction="R_IDOND">
- <gene reference="STM4484"/>
- </geneAssociation>
- <geneAssociation id="ga_924" reaction="R_IDOND2">
- <gene reference="STM4484"/>
- </geneAssociation>
- <geneAssociation id="ga_925" reaction="R_IDONt2rpp">
- <gene reference="STM4482"/>
- </geneAssociation>
- <geneAssociation id="ga_926" reaction="R_IDONtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_927" reaction="R_IG3PS">
- <and>
- <gene reference="STM2075"/>
- <gene reference="STM2077"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_928" reaction="R_IGPDH">
- <gene reference="STM2074"/>
- </geneAssociation>
- <geneAssociation id="ga_929" reaction="R_IGPS">
- <gene reference="STM1725"/>
- </geneAssociation>
- <geneAssociation id="ga_930" reaction="R_ILETA">
- <gene reference="STM3903"/>
- </geneAssociation>
- <geneAssociation id="ga_931" reaction="R_ILETRS">
- <gene reference="STM0046"/>
- </geneAssociation>
- <geneAssociation id="ga_932" reaction="R_ILEabcpp">
- <and>
- <gene reference="STM3560"/>
- <gene reference="STM3561"/>
- <gene reference="STM3563"/>
- <gene reference="STM3567"/>
- <gene reference="STM3562"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_933" reaction="R_ILEt2rpp">
- <gene reference="STM0399"/>
- </geneAssociation>
- <geneAssociation id="ga_934" reaction="R_ILEtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_935" reaction="R_IMPC">
- <gene reference="STM4176"/>
- </geneAssociation>
- <geneAssociation id="ga_936" reaction="R_IMPD">
- <gene reference="STM2511"/>
- </geneAssociation>
- <geneAssociation id="ga_937" reaction="R_IMPtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_938" reaction="R_INDOLEt2pp">
- <and>
- <gene reference="STM3390"/>
- <gene reference="STM3391"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_939" reaction="R_INDOLEt2rpp">
- <gene reference="STM3279"/>
- </geneAssociation>
- <geneAssociation id="ga_940" reaction="R_INDOLEtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_941" reaction="R_INSH">
- <gene reference="STM0051"/>
- </geneAssociation>
- <geneAssociation id="ga_942" reaction="R_INSK">
- <gene reference="STM0491"/>
- </geneAssociation>
- <geneAssociation id="ga_943" reaction="R_INSTtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_944" reaction="R_INSt2pp">
- <gene reference="STM3113"/>
- </geneAssociation>
- <geneAssociation id="ga_945" reaction="R_INSt2rpp">
- <gene reference="STM2421"/>
- </geneAssociation>
- <geneAssociation id="ga_946" reaction="R_INStex">
- <gene reference="STM0413"/>
- </geneAssociation>
- <geneAssociation id="ga_947" reaction="R_IPDDI">
- <gene reference="STM3039"/>
- </geneAssociation>
- <geneAssociation id="ga_948" reaction="R_IPDPS">
- <gene reference="STM0049"/>
- </geneAssociation>
- <geneAssociation id="ga_949" reaction="R_IPMD">
- <gene reference="STM0112"/>
- </geneAssociation>
- <geneAssociation id="ga_950" reaction="R_IPPMIa">
- <or>
- <and>
- <gene reference="STM0110"/>
- <gene reference="STM0111"/>
- </and>
- <and>
- <gene reference="STM0329"/>
- <gene reference="STM0330"/>
- </and>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_951" reaction="R_IPPMIb">
- <or>
- <and>
- <gene reference="STM0110"/>
- <gene reference="STM0111"/>
- </and>
- <and>
- <gene reference="STM0329"/>
- <gene reference="STM0330"/>
- </and>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_952" reaction="R_IPPS">
- <gene reference="STM0113"/>
- </geneAssociation>
- <geneAssociation id="ga_953" reaction="R_ISETACtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_954" reaction="R_K2L4Aabcpp">
- <gene reference="STM0984"/>
- </geneAssociation>
- <geneAssociation id="ga_955" reaction="R_KARA1">
- <gene reference="STM3909"/>
- </geneAssociation>
- <geneAssociation id="ga_956" reaction="R_KARA2">
- <gene reference="STM3909"/>
- </geneAssociation>
- <geneAssociation id="ga_957" reaction="R_KAS14">
- <or>
- <gene reference="STM2378"/>
- <gene reference="STM1197"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_958" reaction="R_KAS15">
- <gene reference="STM1193"/>
- </geneAssociation>
- <geneAssociation id="ga_959" reaction="R_KAT1">
- <or>
- <gene reference="STM2389"/>
- <gene reference="STM3982"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_960" reaction="R_KAT2">
- <or>
- <gene reference="STM3982"/>
- <gene reference="STM2389"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_961" reaction="R_KAT3">
- <or>
- <gene reference="STM2389"/>
- <gene reference="STM3982"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_962" reaction="R_KAT4">
- <or>
- <gene reference="STM2389"/>
- <gene reference="STM3982"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_963" reaction="R_KAT5">
- <or>
- <gene reference="STM2389"/>
- <gene reference="STM3982"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_964" reaction="R_KAT6">
- <or>
- <gene reference="STM3982"/>
- <gene reference="STM2389"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_965" reaction="R_KAT7">
- <or>
- <gene reference="STM3982"/>
- <gene reference="STM2389"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_966" reaction="R_KAT8">
- <or>
- <gene reference="STM3982"/>
- <gene reference="STM2389"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_967" reaction="R_KDOCT2">
- <gene reference="STM0988"/>
- </geneAssociation>
- <geneAssociation id="ga_968" reaction="R_KDOPP">
- <gene reference="STM3316"/>
- </geneAssociation>
- <geneAssociation id="ga_969" reaction="R_KDOPS">
- <gene reference="STM1772"/>
- </geneAssociation>
- <geneAssociation id="ga_970" reaction="R_KG6PDC">
- <or>
- <gene reference="STM4386"/>
- <gene reference="STM3675"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_971" reaction="R_Kabcpp">
- <and>
- <gene reference="STM0706"/>
- <gene reference="STM0705"/>
- <gene reference="STM0704"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_972" reaction="R_Kt2pp">
- <or>
- <gene reference="STM3880"/>
- <and>
- <gene reference="STM1695"/>
- <gene reference="STM3409"/>
- <gene reference="STM3986"/>
- </and>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_973" reaction="R_Kt3pp">
- <or>
- <gene reference="STM3457"/>
- <gene reference="STM0086"/>
- <gene reference="STM1771"/>
- <gene reference="STM0866"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_974" reaction="R_Ktex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_975" reaction="R_LA4NTpp">
- <gene reference="STM2301"/>
- </geneAssociation>
- <geneAssociation id="ga_976" reaction="R_LADGMDH">
- <gene reference="STM1680"/>
- </geneAssociation>
- <geneAssociation id="ga_977" reaction="R_LALDO2x">
- <gene reference="STM4108"/>
- </geneAssociation>
- <geneAssociation id="ga_978" reaction="R_LALGP">
- <gene reference="STM0316"/>
- </geneAssociation>
- <geneAssociation id="ga_979" reaction="R_LCARS">
- <gene reference="STM2973"/>
- </geneAssociation>
- <geneAssociation id="ga_980" reaction="R_LCTStex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_981" reaction="R_LDH_D">
- <or>
- <gene reference="STM2167"/>
- <gene reference="STM1647"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_982" reaction="R_LDH_D2">
- <gene reference="STM2167"/>
- </geneAssociation>
- <geneAssociation id="ga_983" reaction="R_LEUTAi">
- <or>
- <gene reference="STM3903"/>
- <gene reference="STM4248"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_984" reaction="R_LEUTRS">
- <gene reference="STM0648"/>
- </geneAssociation>
- <geneAssociation id="ga_985" reaction="R_LEUabcpp">
- <or>
- <and>
- <gene reference="STM3560"/>
- <gene reference="STM3561"/>
- <gene reference="STM3563"/>
- <gene reference="STM3567"/>
- <gene reference="STM3562"/>
- </and>
- <and>
- <gene reference="STM3560"/>
- <gene reference="STM3561"/>
- <gene reference="STM3563"/>
- <gene reference="STM3564"/>
- <gene reference="STM3562"/>
- </and>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_986" reaction="R_LEUt2rpp">
- <gene reference="STM0399"/>
- </geneAssociation>
- <geneAssociation id="ga_987" reaction="R_LEUtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_988" reaction="R_LGTHL">
- <or>
- <gene reference="STM1435"/>
- <gene reference="STM0235"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_989" reaction="R_LIPACabcpp">
- <gene reference="STM0984"/>
- </geneAssociation>
- <geneAssociation id="ga_990" reaction="R_LIPAabcpp">
- <gene reference="STM0984"/>
- </geneAssociation>
- <geneAssociation id="ga_991" reaction="R_LPADSS">
- <gene reference="STM0229"/>
- </geneAssociation>
- <geneAssociation id="ga_992" reaction="R_LPLIPAL1A120pp">
- <gene reference="STM0506"/>
- </geneAssociation>
- <geneAssociation id="ga_993" reaction="R_LPLIPAL1A140pp">
- <gene reference="STM0506"/>
- </geneAssociation>
- <geneAssociation id="ga_994" reaction="R_LPLIPAL1A141pp">
- <gene reference="STM0506"/>
- </geneAssociation>
- <geneAssociation id="ga_995" reaction="R_LPLIPAL1A160pp">
- <gene reference="STM0506"/>
- </geneAssociation>
- <geneAssociation id="ga_996" reaction="R_LPLIPAL1A161pp">
- <gene reference="STM0506"/>
- </geneAssociation>
- <geneAssociation id="ga_997" reaction="R_LPLIPAL1A180pp">
- <gene reference="STM0506"/>
- </geneAssociation>
- <geneAssociation id="ga_998" reaction="R_LPLIPAL1A181pp">
- <gene reference="STM0506"/>
- </geneAssociation>
- <geneAssociation id="ga_999" reaction="R_LPLIPAL1E120pp">
- <gene reference="STM0506"/>
- </geneAssociation>
- <geneAssociation id="ga_1000" reaction="R_LPLIPAL1E140pp">
- <gene reference="STM0506"/>
- </geneAssociation>
- <geneAssociation id="ga_1001" reaction="R_LPLIPAL1E141pp">
- <gene reference="STM0506"/>
- </geneAssociation>
- <geneAssociation id="ga_1002" reaction="R_LPLIPAL1E160pp">
- <gene reference="STM0506"/>
- </geneAssociation>
- <geneAssociation id="ga_1003" reaction="R_LPLIPAL1E161pp">
- <gene reference="STM0506"/>
- </geneAssociation>
- <geneAssociation id="ga_1004" reaction="R_LPLIPAL1E180pp">
- <gene reference="STM0506"/>
- </geneAssociation>
- <geneAssociation id="ga_1005" reaction="R_LPLIPAL1E181pp">
- <gene reference="STM0506"/>
- </geneAssociation>
- <geneAssociation id="ga_1006" reaction="R_LPLIPAL1G120pp">
- <gene reference="STM0506"/>
- </geneAssociation>
- <geneAssociation id="ga_1007" reaction="R_LPLIPAL1G140pp">
- <gene reference="STM0506"/>
- </geneAssociation>
- <geneAssociation id="ga_1008" reaction="R_LPLIPAL1G141pp">
- <gene reference="STM0506"/>
- </geneAssociation>
- <geneAssociation id="ga_1009" reaction="R_LPLIPAL1G160pp">
- <gene reference="STM0506"/>
- </geneAssociation>
- <geneAssociation id="ga_1010" reaction="R_LPLIPAL1G161pp">
- <gene reference="STM0506"/>
- </geneAssociation>
- <geneAssociation id="ga_1011" reaction="R_LPLIPAL1G180pp">
- <gene reference="STM0506"/>
- </geneAssociation>
- <geneAssociation id="ga_1012" reaction="R_LPLIPAL1G181pp">
- <gene reference="STM0506"/>
- </geneAssociation>
- <geneAssociation id="ga_1013" reaction="R_LPLIPAL2A120">
- <gene reference="STM3961"/>
- </geneAssociation>
- <geneAssociation id="ga_1014" reaction="R_LPLIPAL2A140">
- <gene reference="STM3961"/>
- </geneAssociation>
- <geneAssociation id="ga_1015" reaction="R_LPLIPAL2A141">
- <gene reference="STM3961"/>
- </geneAssociation>
- <geneAssociation id="ga_1016" reaction="R_LPLIPAL2A160">
- <gene reference="STM3961"/>
- </geneAssociation>
- <geneAssociation id="ga_1017" reaction="R_LPLIPAL2A161">
- <gene reference="STM3961"/>
- </geneAssociation>
- <geneAssociation id="ga_1018" reaction="R_LPLIPAL2A180">
- <gene reference="STM3961"/>
- </geneAssociation>
- <geneAssociation id="ga_1019" reaction="R_LPLIPAL2A181">
- <gene reference="STM3961"/>
- </geneAssociation>
- <geneAssociation id="ga_1020" reaction="R_LPLIPAL2ATE120">
- <gene reference="STM3961"/>
- </geneAssociation>
- <geneAssociation id="ga_1021" reaction="R_LPLIPAL2ATE140">
- <gene reference="STM3961"/>
- </geneAssociation>
- <geneAssociation id="ga_1022" reaction="R_LPLIPAL2ATE141">
- <gene reference="STM3961"/>
- </geneAssociation>
- <geneAssociation id="ga_1023" reaction="R_LPLIPAL2ATE160">
- <gene reference="STM3961"/>
- </geneAssociation>
- <geneAssociation id="ga_1024" reaction="R_LPLIPAL2ATE161">
- <gene reference="STM3961"/>
- </geneAssociation>
- <geneAssociation id="ga_1025" reaction="R_LPLIPAL2ATE180">
- <gene reference="STM3961"/>
- </geneAssociation>
- <geneAssociation id="ga_1026" reaction="R_LPLIPAL2ATE181">
- <gene reference="STM3961"/>
- </geneAssociation>
- <geneAssociation id="ga_1027" reaction="R_LPLIPAL2ATG120">
- <gene reference="STM3961"/>
- </geneAssociation>
- <geneAssociation id="ga_1028" reaction="R_LPLIPAL2ATG140">
- <gene reference="STM3961"/>
- </geneAssociation>
- <geneAssociation id="ga_1029" reaction="R_LPLIPAL2ATG141">
- <gene reference="STM3961"/>
- </geneAssociation>
- <geneAssociation id="ga_1030" reaction="R_LPLIPAL2ATG160">
- <gene reference="STM3961"/>
- </geneAssociation>
- <geneAssociation id="ga_1031" reaction="R_LPLIPAL2ATG161">
- <gene reference="STM3961"/>
- </geneAssociation>
- <geneAssociation id="ga_1032" reaction="R_LPLIPAL2ATG180">
- <gene reference="STM3961"/>
- </geneAssociation>
- <geneAssociation id="ga_1033" reaction="R_LPLIPAL2ATG181">
- <gene reference="STM3961"/>
- </geneAssociation>
- <geneAssociation id="ga_1034" reaction="R_LPLIPAL2E120">
- <gene reference="STM3961"/>
- </geneAssociation>
- <geneAssociation id="ga_1035" reaction="R_LPLIPAL2E140">
- <gene reference="STM3961"/>
- </geneAssociation>
- <geneAssociation id="ga_1036" reaction="R_LPLIPAL2E141">
- <gene reference="STM3961"/>
- </geneAssociation>
- <geneAssociation id="ga_1037" reaction="R_LPLIPAL2E160">
- <gene reference="STM3961"/>
- </geneAssociation>
- <geneAssociation id="ga_1038" reaction="R_LPLIPAL2E161">
- <gene reference="STM3961"/>
- </geneAssociation>
- <geneAssociation id="ga_1039" reaction="R_LPLIPAL2E180">
- <gene reference="STM3961"/>
- </geneAssociation>
- <geneAssociation id="ga_1040" reaction="R_LPLIPAL2E181">
- <gene reference="STM3961"/>
- </geneAssociation>
- <geneAssociation id="ga_1041" reaction="R_LPLIPAL2G120">
- <gene reference="STM3961"/>
- </geneAssociation>
- <geneAssociation id="ga_1042" reaction="R_LPLIPAL2G140">
- <gene reference="STM3961"/>
- </geneAssociation>
- <geneAssociation id="ga_1043" reaction="R_LPLIPAL2G141">
- <gene reference="STM3961"/>
- </geneAssociation>
- <geneAssociation id="ga_1044" reaction="R_LPLIPAL2G160">
- <gene reference="STM3961"/>
- </geneAssociation>
- <geneAssociation id="ga_1045" reaction="R_LPLIPAL2G161">
- <gene reference="STM3961"/>
- </geneAssociation>
- <geneAssociation id="ga_1046" reaction="R_LPLIPAL2G180">
- <gene reference="STM3961"/>
- </geneAssociation>
- <geneAssociation id="ga_1047" reaction="R_LPLIPAL2G181">
- <gene reference="STM3961"/>
- </geneAssociation>
- <geneAssociation id="ga_1048" reaction="R_LSERDHr">
- <gene reference="STM1511"/>
- </geneAssociation>
- <geneAssociation id="ga_1049" reaction="R_LYSDC">
- <or>
- <gene reference="STM0234"/>
- <gene reference="STM2559"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1050" reaction="R_LYSTRS">
- <gene reference="STM3040"/>
- </geneAssociation>
- <geneAssociation id="ga_1051" reaction="R_LYSabcpp">
- <and>
- <gene reference="STM2355"/>
- <gene reference="STM2352"/>
- <gene reference="STM2351"/>
- <gene reference="STM2353"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1052" reaction="R_LYSt2pp">
- <gene reference="STM2200"/>
- </geneAssociation>
- <geneAssociation id="ga_1053" reaction="R_LYSt3pp">
- <gene reference="STM3066"/>
- </geneAssociation>
- <geneAssociation id="ga_1054" reaction="R_LYStex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1055" reaction="R_LYXI">
- <gene reference="STM4046"/>
- </geneAssociation>
- <geneAssociation id="ga_1056" reaction="R_LYXt2pp">
- <gene reference="STM4050"/>
- </geneAssociation>
- <geneAssociation id="ga_1057" reaction="R_LYXtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1058" reaction="R_L_LACD2">
- <gene reference="STM3694"/>
- </geneAssociation>
- <geneAssociation id="ga_1059" reaction="R_L_LACD3">
- <gene reference="STM3694"/>
- </geneAssociation>
- <geneAssociation id="ga_1060" reaction="R_L_LACt2rpp">
- <gene reference="STM3692"/>
- </geneAssociation>
- <geneAssociation id="ga_1061" reaction="R_L_LACtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1062" reaction="R_M1PD">
- <gene reference="STM3686"/>
- </geneAssociation>
- <geneAssociation id="ga_1063" reaction="R_MACPD">
- <gene reference="STM2378"/>
- </geneAssociation>
- <geneAssociation id="ga_1064" reaction="R_MALDt2_2pp">
- <gene reference="STM3614"/>
- </geneAssociation>
- <geneAssociation id="ga_1065" reaction="R_MALDtex">
- <or>
- <gene reference="STM1473"/>
- <gene reference="STM0999"/>
- <gene reference="STM2267"/>
- <gene reference="STM0320"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1066" reaction="R_MALS">
- <gene reference="STM4183"/>
- </geneAssociation>
- <geneAssociation id="ga_1067" reaction="R_MALTATr">
- <gene reference="STM0472"/>
- </geneAssociation>
- <geneAssociation id="ga_1068" reaction="R_MALTHXabcpp">
- <and>
- <gene reference="STM4229"/>
- <gene reference="STM4228"/>
- <gene reference="STM4227"/>
- <gene reference="STM4230"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1069" reaction="R_MALTHXtexi">
- <gene reference="STM4231"/>
- </geneAssociation>
- <geneAssociation id="ga_1070" reaction="R_MALTPTabcpp">
- <and>
- <gene reference="STM4229"/>
- <gene reference="STM4228"/>
- <gene reference="STM4227"/>
- <gene reference="STM4230"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1071" reaction="R_MALTPTtexi">
- <gene reference="STM4231"/>
- </geneAssociation>
- <geneAssociation id="ga_1072" reaction="R_MALTTRabcpp">
- <and>
- <gene reference="STM4229"/>
- <gene reference="STM4228"/>
- <gene reference="STM4227"/>
- <gene reference="STM4230"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1073" reaction="R_MALTTRtexi">
- <gene reference="STM4231"/>
- </geneAssociation>
- <geneAssociation id="ga_1074" reaction="R_MALTTTRabcpp">
- <and>
- <gene reference="STM4229"/>
- <gene reference="STM4228"/>
- <gene reference="STM4227"/>
- <gene reference="STM4230"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1075" reaction="R_MALTTTRtexi">
- <gene reference="STM4231"/>
- </geneAssociation>
- <geneAssociation id="ga_1076" reaction="R_MALTabcpp">
- <and>
- <gene reference="STM4229"/>
- <gene reference="STM4228"/>
- <gene reference="STM4227"/>
- <gene reference="STM4230"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1077" reaction="R_MALTptspp">
- <and>
- <gene reference="STM2433"/>
- <gene reference="STM2431"/>
- <gene reference="STM2432"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1078" reaction="R_MALTtexi">
- <gene reference="STM4231"/>
- </geneAssociation>
- <geneAssociation id="ga_1079" reaction="R_MALt2_2pp">
- <gene reference="STM3614"/>
- </geneAssociation>
- <geneAssociation id="ga_1080" reaction="R_MALtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1081" reaction="R_MAN6PI">
- <gene reference="STM1467"/>
- </geneAssociation>
- <geneAssociation id="ga_1082" reaction="R_MAN6Pt6_2pp">
- <gene reference="STM3787"/>
- </geneAssociation>
- <geneAssociation id="ga_1083" reaction="R_MAN6Ptex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1084" reaction="R_MANGLYCtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1085" reaction="R_MANptspp">
- <and>
- <gene reference="STM1830"/>
- <gene reference="STM1831"/>
- <gene reference="STM1832"/>
- <gene reference="STM2431"/>
- <gene reference="STM2432"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1086" reaction="R_MANtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1087" reaction="R_MCITD">
- <gene reference="STM0370"/>
- </geneAssociation>
- <geneAssociation id="ga_1088" reaction="R_MCITL2">
- <gene reference="STM0368"/>
- </geneAssociation>
- <geneAssociation id="ga_1089" reaction="R_MCITS">
- <gene reference="STM0369"/>
- </geneAssociation>
- <geneAssociation id="ga_1090" reaction="R_MCOATA">
- <and>
- <gene reference="STM1196"/>
- <gene reference="STM1194"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1091" reaction="R_MCPST">
- <gene reference="STM2533"/>
- </geneAssociation>
- <geneAssociation id="ga_1092" reaction="R_MCTP1App">
- <or>
- <gene reference="STM0122"/>
- <gene reference="STM0640"/>
- <gene reference="STM0190"/>
- <gene reference="STM3493"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1093" reaction="R_MCTP1Bpp">
- <or>
- <gene reference="STM0190"/>
- <gene reference="STM3493"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1094" reaction="R_MCTP2App">
- <or>
- <gene reference="STM0122"/>
- <gene reference="STM0640"/>
- <gene reference="STM3493"/>
- <gene reference="STM0190"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1095" reaction="R_MDDCP1pp">
- <or>
- <gene reference="STM0637"/>
- <gene reference="STM3300"/>
- <gene reference="STM0863"/>
- <gene reference="STM2062"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1096" reaction="R_MDDCP2pp">
- <or>
- <gene reference="STM0637"/>
- <gene reference="STM3300"/>
- <gene reference="STM0863"/>
- <gene reference="STM2062"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1097" reaction="R_MDDCP3pp">
- <or>
- <gene reference="STM0637"/>
- <gene reference="STM3300"/>
- <gene reference="STM0863"/>
- <gene reference="STM2062"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1098" reaction="R_MDDCP4pp">
- <or>
- <gene reference="STM0637"/>
- <gene reference="STM3300"/>
- <gene reference="STM0863"/>
- <gene reference="STM2062"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1099" reaction="R_MDDCP5pp">
- <or>
- <gene reference="STM0637"/>
- <gene reference="STM3300"/>
- <gene reference="STM0863"/>
- <gene reference="STM2062"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1100" reaction="R_MDDEP1pp">
- <or>
- <gene reference="STM3300"/>
- <gene reference="STM2383"/>
- <gene reference="STM2168"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1101" reaction="R_MDDEP2pp">
- <or>
- <gene reference="STM3300"/>
- <gene reference="STM2383"/>
- <gene reference="STM2168"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1102" reaction="R_MDDEP3pp">
- <or>
- <gene reference="STM3300"/>
- <gene reference="STM2383"/>
- <gene reference="STM2168"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1103" reaction="R_MDDEP4pp">
- <or>
- <gene reference="STM3300"/>
- <gene reference="STM2383"/>
- <gene reference="STM2168"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1104" reaction="R_MDH">
- <gene reference="STM3359"/>
- </geneAssociation>
- <geneAssociation id="ga_1105" reaction="R_ME1">
- <gene reference="STM1566"/>
- </geneAssociation>
- <geneAssociation id="ga_1106" reaction="R_ME2">
- <gene reference="STM2472"/>
- </geneAssociation>
- <geneAssociation id="ga_1107" reaction="R_MECDPDH2">
- <gene reference="STM2523"/>
- </geneAssociation>
- <geneAssociation id="ga_1108" reaction="R_MECDPS">
- <gene reference="STM2929"/>
- </geneAssociation>
- <geneAssociation id="ga_1109" reaction="R_MELIBt2pp">
- <gene reference="STM4299"/>
- </geneAssociation>
- <geneAssociation id="ga_1110" reaction="R_MELIBt3ipp">
- <gene reference="STM1522"/>
- </geneAssociation>
- <geneAssociation id="ga_1111" reaction="R_MELIBtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1112" reaction="R_MEPCT">
- <gene reference="STM2930"/>
- </geneAssociation>
- <geneAssociation id="ga_1113" reaction="R_METAT">
- <gene reference="STM3090"/>
- </geneAssociation>
- <geneAssociation id="ga_1114" reaction="R_METDabcpp">
- <and>
- <gene reference="STM0246"/>
- <gene reference="STM0247"/>
- <gene reference="STM0245"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1115" reaction="R_METDtex">
- <or>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1116" reaction="R_METOX1s">
- <gene reference="s0001"/>
- </geneAssociation>
- <geneAssociation id="ga_1117" reaction="R_METOX2s">
- <gene reference="s0001"/>
- </geneAssociation>
- <geneAssociation id="ga_1118" reaction="R_METS">
- <or>
- <gene reference="STM4188.S"/>
- <gene reference="STM3965"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1119" reaction="R_METSOX1tex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1120" reaction="R_METSOX2tex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1121" reaction="R_METSOXR1">
- <or>
- <and>
- <gene reference="STM4408"/>
- <gene reference="STM2649"/>
- </and>
- <and>
- <gene reference="STM4408"/>
- <gene reference="STM3915"/>
- </and>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1122" reaction="R_METSOXR2">
- <or>
- <and>
- <gene reference="STM1291"/>
- <gene reference="STM2649"/>
- </and>
- <and>
- <gene reference="STM1291"/>
- <gene reference="STM3915"/>
- </and>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1123" reaction="R_METTRS">
- <gene reference="STM2155"/>
- </geneAssociation>
- <geneAssociation id="ga_1124" reaction="R_METabcpp">
- <and>
- <gene reference="STM0246"/>
- <gene reference="STM0247"/>
- <gene reference="STM0245"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1125" reaction="R_METtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1126" reaction="R_MG2tex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1127" reaction="R_MG2tpp">
- <gene reference="STM3952"/>
- </geneAssociation>
- <geneAssociation id="ga_1128" reaction="R_MGSA">
- <gene reference="STM1076"/>
- </geneAssociation>
- <geneAssociation id="ga_1129" reaction="R_MI1PP">
- <gene reference="STM2546"/>
- </geneAssociation>
- <geneAssociation id="ga_1130" reaction="R_MICITD">
- <gene reference="STM0158"/>
- </geneAssociation>
- <geneAssociation id="ga_1131" reaction="R_MLTG1">
- <gene reference="STM0401"/>
- </geneAssociation>
- <geneAssociation id="ga_1132" reaction="R_MLTG2">
- <gene reference="STM0401"/>
- </geneAssociation>
- <geneAssociation id="ga_1133" reaction="R_MLTG3">
- <gene reference="STM0401"/>
- </geneAssociation>
- <geneAssociation id="ga_1134" reaction="R_MLTG4">
- <gene reference="STM0401"/>
- </geneAssociation>
- <geneAssociation id="ga_1135" reaction="R_MLTG5">
- <gene reference="STM0401"/>
- </geneAssociation>
- <geneAssociation id="ga_1136" reaction="R_MLTGY1pp">
- <or>
- <gene reference="STM4582"/>
- <gene reference="STM2988"/>
- <gene reference="STM2831"/>
- <gene reference="STM1799"/>
- <gene reference="STM3112"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1137" reaction="R_MLTGY2pp">
- <or>
- <gene reference="STM4582"/>
- <gene reference="STM2988"/>
- <gene reference="STM2831"/>
- <gene reference="STM1799"/>
- <gene reference="STM3112"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1138" reaction="R_MLTGY3pp">
- <or>
- <gene reference="STM4582"/>
- <gene reference="STM2988"/>
- <gene reference="STM2831"/>
- <gene reference="STM1799"/>
- <gene reference="STM3112"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1139" reaction="R_MLTGY4pp">
- <or>
- <gene reference="STM4582"/>
- <gene reference="STM2988"/>
- <gene reference="STM2831"/>
- <gene reference="STM1799"/>
- <gene reference="STM3112"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1140" reaction="R_MLTP1">
- <gene reference="STM3514"/>
- </geneAssociation>
- <geneAssociation id="ga_1141" reaction="R_MLTP2">
- <gene reference="STM3514"/>
- </geneAssociation>
- <geneAssociation id="ga_1142" reaction="R_MLTP3">
- <gene reference="STM3514"/>
- </geneAssociation>
- <geneAssociation id="ga_1143" reaction="R_MMETtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1144" reaction="R_MN2t3pp">
- <or>
- <gene reference="STM4061"/>
- <gene reference="STM0758"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1145" reaction="R_MN2tpp">
- <gene reference="STM3190"/>
- </geneAssociation>
- <geneAssociation id="ga_1146" reaction="R_MN6PP">
- <or>
- <gene reference="STM0840"/>
- <gene reference="STM0842"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1147" reaction="R_MNLptspp">
- <and>
- <gene reference="STM3685"/>
- <gene reference="STM2431"/>
- <gene reference="STM2432"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1148" reaction="R_MNLtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1149" reaction="R_MNt2pp">
- <gene reference="STM2408"/>
- </geneAssociation>
- <geneAssociation id="ga_1150" reaction="R_MNtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1151" reaction="R_MOAT">
- <gene reference="STM3724"/>
- </geneAssociation>
- <geneAssociation id="ga_1152" reaction="R_MOAT2">
- <gene reference="STM3724"/>
- </geneAssociation>
- <geneAssociation id="ga_1153" reaction="R_MOAT3C">
- <gene reference="STM3715"/>
- </geneAssociation>
- <geneAssociation id="ga_1154" reaction="R_MOBDabcpp">
- <or>
- <and>
- <gene reference="STM2441"/>
- <gene reference="STM2444"/>
- <gene reference="STM2443"/>
- <gene reference="STM2442"/>
- </and>
- <and>
- <gene reference="STM0781"/>
- <gene reference="STM0782"/>
- <gene reference="STM0783"/>
- </and>
- <and>
- <gene reference="STM2441"/>
- <gene reference="STM2443"/>
- <gene reference="STM2442"/>
- <gene reference="STM4063"/>
- </and>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1155" reaction="R_MOBDtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1156" reaction="R_MOHMT">
- <gene reference="STM0182"/>
- </geneAssociation>
- <geneAssociation id="ga_1157" reaction="R_MPTG">
- <or>
- <gene reference="STM2531"/>
- <gene reference="STM0190"/>
- <gene reference="STM3493"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1158" reaction="R_MPTG2">
- <or>
- <gene reference="STM0190"/>
- <gene reference="STM2531"/>
- <gene reference="STM3493"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1159" reaction="R_MSO3tex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1160" reaction="R_MTAN">
- <gene reference="STM0207"/>
- </geneAssociation>
- <geneAssociation id="ga_1161" reaction="R_MTHFC">
- <gene reference="STM0542"/>
- </geneAssociation>
- <geneAssociation id="ga_1162" reaction="R_MTHFD">
- <gene reference="STM0542"/>
- </geneAssociation>
- <geneAssociation id="ga_1163" reaction="R_MTHFR2">
- <gene reference="STM4105"/>
- </geneAssociation>
- <geneAssociation id="ga_1164" reaction="R_MTRPOX">
- <gene reference="STM1160"/>
- </geneAssociation>
- <geneAssociation id="ga_1165" reaction="R_N2Otex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1166" reaction="R_N2Otpp">
- <gene reference="s0001"/>
- </geneAssociation>
- <geneAssociation id="ga_1167" reaction="R_NACODA">
- <gene reference="STM4120"/>
- </geneAssociation>
- <geneAssociation id="ga_1168" reaction="R_NACtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1169" reaction="R_NADDP">
- <or>
- <gene reference="STM2427"/>
- <gene reference="STM4166"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1170" reaction="R_NADH10">
- <gene reference="STM1211"/>
- </geneAssociation>
- <geneAssociation id="ga_1171" reaction="R_NADH16pp">
- <and>
- <gene reference="STM2316.S"/>
- <gene reference="STM2317"/>
- <gene reference="STM2318"/>
- <gene reference="STM2319"/>
- <gene reference="STM2320"/>
- <gene reference="STM2321"/>
- <gene reference="STM2322"/>
- <gene reference="STM2323.S"/>
- <gene reference="STM2324"/>
- <gene reference="STM2325"/>
- <gene reference="STM2326"/>
- <gene reference="STM2327"/>
- <gene reference="STM2328"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1172" reaction="R_NADH17pp">
- <and>
- <gene reference="STM2316.S"/>
- <gene reference="STM2317"/>
- <gene reference="STM2318"/>
- <gene reference="STM2319"/>
- <gene reference="STM2320"/>
- <gene reference="STM2321"/>
- <gene reference="STM2322"/>
- <gene reference="STM2323.S"/>
- <gene reference="STM2324"/>
- <gene reference="STM2325"/>
- <gene reference="STM2326"/>
- <gene reference="STM2327"/>
- <gene reference="STM2328"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1173" reaction="R_NADH18pp">
- <and>
- <gene reference="STM2316.S"/>
- <gene reference="STM2317"/>
- <gene reference="STM2318"/>
- <gene reference="STM2319"/>
- <gene reference="STM2320"/>
- <gene reference="STM2321"/>
- <gene reference="STM2322"/>
- <gene reference="STM2323.S"/>
- <gene reference="STM2324"/>
- <gene reference="STM2325"/>
- <gene reference="STM2326"/>
- <gene reference="STM2327"/>
- <gene reference="STM2328"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1174" reaction="R_NADH5">
- <gene reference="STM1211"/>
- </geneAssociation>
- <geneAssociation id="ga_1175" reaction="R_NADH9">
- <gene reference="STM1211"/>
- </geneAssociation>
- <geneAssociation id="ga_1176" reaction="R_NADK">
- <gene reference="STM2683"/>
- </geneAssociation>
- <geneAssociation id="ga_1177" reaction="R_NADPHQR2">
- <gene reference="STM3179"/>
- </geneAssociation>
- <geneAssociation id="ga_1178" reaction="R_NADPHQR3">
- <gene reference="STM3179"/>
- </geneAssociation>
- <geneAssociation id="ga_1179" reaction="R_NADPHQR4">
- <gene reference="STM3179"/>
- </geneAssociation>
- <geneAssociation id="ga_1180" reaction="R_NADS1">
- <gene reference="STM1310"/>
- </geneAssociation>
- <geneAssociation id="ga_1181" reaction="R_NADTRHD">
- <or>
- <gene reference="STM4126"/>
- <and>
- <gene reference="STM1480"/>
- <gene reference="STM1479"/>
- </and>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1182" reaction="R_NAMNPP">
- <gene reference="STM1004"/>
- </geneAssociation>
- <geneAssociation id="ga_1183" reaction="R_NAt3_1p5pp">
- <gene reference="STM1806"/>
- </geneAssociation>
- <geneAssociation id="ga_1184" reaction="R_NAt3_2pp">
- <gene reference="STM0039"/>
- </geneAssociation>
- <geneAssociation id="ga_1185" reaction="R_NAtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1186" reaction="R_NDPK1">
- <or>
- <gene reference="STM0488"/>
- <gene reference="STM2526"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1187" reaction="R_NDPK2">
- <or>
- <gene reference="STM0488"/>
- <gene reference="STM2526"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1188" reaction="R_NDPK3">
- <or>
- <gene reference="STM0488"/>
- <gene reference="STM2526"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1189" reaction="R_NDPK4">
- <or>
- <gene reference="STM2526"/>
- <gene reference="STM0488"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1190" reaction="R_NDPK5">
- <or>
- <gene reference="STM2526"/>
- <gene reference="STM0488"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1191" reaction="R_NDPK6">
- <or>
- <gene reference="STM0488"/>
- <gene reference="STM2526"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1192" reaction="R_NDPK7">
- <or>
- <gene reference="STM2526"/>
- <gene reference="STM0488"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1193" reaction="R_NDPK8">
- <or>
- <gene reference="STM2526"/>
- <gene reference="STM0488"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1194" reaction="R_NH4tex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1195" reaction="R_NH4tpp">
- <or>
- <gene reference="s0001"/>
- <gene reference="STM0463"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1196" reaction="R_NHFRBO">
- <and>
- <gene reference="STM2840"/>
- <gene reference="STM2841"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1197" reaction="R_NI2abcpp">
- <gene reference="STM3576"/>
- </geneAssociation>
- <geneAssociation id="ga_1198" reaction="R_NI2t3pp">
- <or>
- <gene reference="STM4061"/>
- <gene reference="STM0758"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1199" reaction="R_NI2tex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1200" reaction="R_NMNAT">
- <or>
- <gene reference="STM0645"/>
- <gene reference="STM4580.S"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1201" reaction="R_NMNPtpp">
- <gene reference="STM0757"/>
- </geneAssociation>
- <geneAssociation id="ga_1202" reaction="R_NMNtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1203" reaction="R_NNAM">
- <gene reference="STM1293"/>
- </geneAssociation>
- <geneAssociation id="ga_1204" reaction="R_NNATr">
- <gene reference="STM0645"/>
- </geneAssociation>
- <geneAssociation id="ga_1205" reaction="R_NNDPR">
- <gene reference="STM0145"/>
- </geneAssociation>
- <geneAssociation id="ga_1206" reaction="R_NO2t2rpp">
- <or>
- <gene reference="STM1765"/>
- <gene reference="STM3476"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1207" reaction="R_NO2tex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1208" reaction="R_NO3R1bpp">
- <and>
- <gene reference="STM2256"/>
- <gene reference="STM2259"/>
- <gene reference="STM2255"/>
- <gene reference="STM2258"/>
- <gene reference="STM2257"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1209" reaction="R_NO3R1pp">
- <or>
- <and>
- <gene reference="STM1580"/>
- <gene reference="STM1579"/>
- <gene reference="STM1578"/>
- <gene reference="STM1577"/>
- </and>
- <and>
- <gene reference="STM1764"/>
- <gene reference="STM1763"/>
- <gene reference="STM1762"/>
- <gene reference="STM1761"/>
- </and>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1210" reaction="R_NO3R2bpp">
- <and>
- <gene reference="STM2255"/>
- <gene reference="STM2256"/>
- <gene reference="STM2259"/>
- <gene reference="STM2260"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1211" reaction="R_NO3R2pp">
- <or>
- <and>
- <gene reference="STM1580"/>
- <gene reference="STM1579"/>
- <gene reference="STM1578"/>
- <gene reference="STM1577"/>
- </and>
- <and>
- <gene reference="STM1764"/>
- <gene reference="STM1763"/>
- <gene reference="STM1762"/>
- <gene reference="STM1761"/>
- </and>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1212" reaction="R_NO3t7pp">
- <or>
- <gene reference="STM1765"/>
- <gene reference="STM1576"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1213" reaction="R_NO3tex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM2267"/>
- <gene reference="STM1473"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1214" reaction="R_NODOx">
- <gene reference="STM2556"/>
- </geneAssociation>
- <geneAssociation id="ga_1215" reaction="R_NODOy">
- <gene reference="STM2556"/>
- </geneAssociation>
- <geneAssociation id="ga_1216" reaction="R_NOtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1217" reaction="R_NOtpp">
- <gene reference="s0001"/>
- </geneAssociation>
- <geneAssociation id="ga_1218" reaction="R_NPHS">
- <gene reference="STM2307"/>
- </geneAssociation>
- <geneAssociation id="ga_1219" reaction="R_NTD1">
- <or>
- <gene reference="STM2332"/>
- <gene reference="STM2927"/>
- <gene reference="STM4559.S"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1220" reaction="R_NTD10">
- <gene reference="STM2927"/>
- </geneAssociation>
- <geneAssociation id="ga_1221" reaction="R_NTD10pp">
- <or>
- <gene reference="STM0494"/>
- <gene reference="STM4249"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1222" reaction="R_NTD11">
- <gene reference="STM2927"/>
- </geneAssociation>
- <geneAssociation id="ga_1223" reaction="R_NTD11pp">
- <or>
- <gene reference="STM4249"/>
- <gene reference="STM0494"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1224" reaction="R_NTD12">
- <or>
- <gene reference="STM2332"/>
- <gene reference="STM2927"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1225" reaction="R_NTD12pp">
- <or>
- <gene reference="STM0494"/>
- <gene reference="STM4249"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1226" reaction="R_NTD1pp">
- <or>
- <gene reference="STM0494"/>
- <gene reference="STM4249"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1227" reaction="R_NTD2">
- <or>
- <gene reference="STM4559.S"/>
- <gene reference="STM2927"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1228" reaction="R_NTD2pp">
- <or>
- <gene reference="STM4249"/>
- <gene reference="STM0494"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1229" reaction="R_NTD3">
- <or>
- <gene reference="STM2927"/>
- <gene reference="STM2332"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1230" reaction="R_NTD3pp">
- <or>
- <gene reference="STM0494"/>
- <gene reference="STM4249"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1231" reaction="R_NTD4">
- <gene reference="STM2927"/>
- </geneAssociation>
- <geneAssociation id="ga_1232" reaction="R_NTD4pp">
- <or>
- <gene reference="STM4249"/>
- <gene reference="STM0494"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1233" reaction="R_NTD5">
- <or>
- <gene reference="STM2332"/>
- <gene reference="STM2927"/>
- <gene reference="STM4559.S"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1234" reaction="R_NTD5pp">
- <or>
- <gene reference="STM0494"/>
- <gene reference="STM4249"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1235" reaction="R_NTD6">
- <or>
- <gene reference="STM2332"/>
- <gene reference="STM2927"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1236" reaction="R_NTD6pp">
- <or>
- <gene reference="STM4249"/>
- <gene reference="STM0494"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1237" reaction="R_NTD7">
- <gene reference="STM2927"/>
- </geneAssociation>
- <geneAssociation id="ga_1238" reaction="R_NTD7pp">
- <or>
- <gene reference="STM0494"/>
- <gene reference="STM4249"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1239" reaction="R_NTD8">
- <or>
- <gene reference="STM2332"/>
- <gene reference="STM2927"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1240" reaction="R_NTD8pp">
- <or>
- <gene reference="STM0494"/>
- <gene reference="STM4249"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1241" reaction="R_NTD9">
- <gene reference="STM2927"/>
- </geneAssociation>
- <geneAssociation id="ga_1242" reaction="R_NTD9pp">
- <or>
- <gene reference="STM4249"/>
- <gene reference="STM0494"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1243" reaction="R_NTP1">
- <or>
- <gene reference="STM0659"/>
- <gene reference="STM4349"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1244" reaction="R_NTP10">
- <or>
- <gene reference="STM4584"/>
- <gene reference="STM4349"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1245" reaction="R_NTP11">
- <gene reference="STM4584"/>
- </geneAssociation>
- <geneAssociation id="ga_1246" reaction="R_NTP12">
- <gene reference="STM4584"/>
- </geneAssociation>
- <geneAssociation id="ga_1247" reaction="R_NTP3">
- <gene reference="STM4349"/>
- </geneAssociation>
- <geneAssociation id="ga_1248" reaction="R_NTP5">
- <gene reference="STM4349"/>
- </geneAssociation>
- <geneAssociation id="ga_1249" reaction="R_NTPP1">
- <or>
- <gene reference="STM2954"/>
- <gene reference="STM0137"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1250" reaction="R_NTPP10">
- <gene reference="STM3103"/>
- </geneAssociation>
- <geneAssociation id="ga_1251" reaction="R_NTPP11">
- <gene reference="STM3103"/>
- </geneAssociation>
- <geneAssociation id="ga_1252" reaction="R_NTPP2">
- <or>
- <gene reference="STM0137"/>
- <gene reference="STM2954"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1253" reaction="R_NTPP3">
- <or>
- <gene reference="STM2954"/>
- <gene reference="STM2295"/>
- <gene reference="STM1301"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1254" reaction="R_NTPP4">
- <or>
- <gene reference="STM2954"/>
- <gene reference="STM1301"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1255" reaction="R_NTPP5">
- <or>
- <gene reference="STM2954"/>
- <gene reference="STM1900"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1256" reaction="R_NTPP6">
- <gene reference="STM2954"/>
- </geneAssociation>
- <geneAssociation id="ga_1257" reaction="R_NTPP7">
- <or>
- <gene reference="STM2295"/>
- <gene reference="STM2954"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1258" reaction="R_NTPP8">
- <gene reference="STM2954"/>
- </geneAssociation>
- <geneAssociation id="ga_1259" reaction="R_NTPP9">
- <gene reference="STM3103"/>
- </geneAssociation>
- <geneAssociation id="ga_1260" reaction="R_NTPTP1">
- <gene reference="STM0208"/>
- </geneAssociation>
- <geneAssociation id="ga_1261" reaction="R_NTPTP2">
- <gene reference="STM0208"/>
- </geneAssociation>
- <geneAssociation id="ga_1262" reaction="R_NTRIR2x">
- <and>
- <gene reference="STM3474"/>
- <gene reference="STM3475"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1263" reaction="R_NTRIR3pp">
- <and>
- <gene reference="STM4277"/>
- <gene reference="STM4278.S"/>
- <gene reference="STM4279"/>
- <gene reference="STM4280"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1264" reaction="R_NTRIR4pp">
- <and>
- <gene reference="STM4277"/>
- <gene reference="STM4278.S"/>
- <gene reference="STM4279"/>
- <gene reference="STM4280"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1265" reaction="R_O2Stex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1266" reaction="R_O2tex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1267" reaction="R_O2tpp">
- <gene reference="s0001"/>
- </geneAssociation>
- <geneAssociation id="ga_1268" reaction="R_OAADC">
- <gene reference="STM1884"/>
- </geneAssociation>
- <geneAssociation id="ga_1269" reaction="R_OBTFL">
- <or>
- <and>
- <gene reference="STM0970"/>
- <gene reference="STM0973"/>
- <gene reference="STM2646"/>
- </and>
- <and>
- <gene reference="STM0970"/>
- <gene reference="STM0973"/>
- </and>
- <and>
- <gene reference="STM0970"/>
- <gene reference="STM3241"/>
- </and>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1270" reaction="R_OCDCAtexi">
- <gene reference="STM2391"/>
- </geneAssociation>
- <geneAssociation id="ga_1271" reaction="R_OCDCEAtexi">
- <gene reference="STM2391"/>
- </geneAssociation>
- <geneAssociation id="ga_1272" reaction="R_OCTAtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1273" reaction="R_OCTDPS">
- <gene reference="STM3305"/>
- </geneAssociation>
- <geneAssociation id="ga_1274" reaction="R_ODECOAI">
- <gene reference="STM3983"/>
- </geneAssociation>
- <geneAssociation id="ga_1275" reaction="R_OHPBAT">
- <gene reference="STM0977"/>
- </geneAssociation>
- <geneAssociation id="ga_1276" reaction="R_OHPHM">
- <gene reference="STM2276"/>
- </geneAssociation>
- <geneAssociation id="ga_1277" reaction="R_OMBZLM">
- <gene reference="STM3970"/>
- </geneAssociation>
- <geneAssociation id="ga_1278" reaction="R_OMCDC">
- <gene reference="STM0112"/>
- </geneAssociation>
- <geneAssociation id="ga_1279" reaction="R_OMMBLHX">
- <gene reference="STM0671"/>
- </geneAssociation>
- <geneAssociation id="ga_1280" reaction="R_OMPDC">
- <gene reference="STM1707"/>
- </geneAssociation>
- <geneAssociation id="ga_1281" reaction="R_OMPHHX">
- <gene reference="STM3057"/>
- </geneAssociation>
- <geneAssociation id="ga_1282" reaction="R_OPHBDC">
- <or>
- <gene reference="STM3978"/>
- <gene reference="STM2356"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1283" reaction="R_OPHHX">
- <gene reference="STM3972"/>
- </geneAssociation>
- <geneAssociation id="ga_1284" reaction="R_ORNDC">
- <or>
- <gene reference="STM3114"/>
- <gene reference="STM0701"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1285" reaction="R_ORNabcpp">
- <and>
- <gene reference="STM2355"/>
- <gene reference="STM2352"/>
- <gene reference="STM2351"/>
- <gene reference="STM2353"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1286" reaction="R_ORNtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1287" reaction="R_OROTt2_2pp">
- <gene reference="STM3614"/>
- </geneAssociation>
- <geneAssociation id="ga_1288" reaction="R_OAAt2_2pp">
- <gene reference="STM3614"/>
- </geneAssociation>
- <geneAssociation id="ga_1289" reaction="R_OROTtex">
- <or>
- <gene reference="STM1473"/>
- <gene reference="STM0999"/>
- <gene reference="STM0320"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1290" reaction="R_OAAtex">
- <or>
- <gene reference="STM1473"/>
- <gene reference="STM0999"/>
- <gene reference="STM0320"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1291" reaction="R_ORPT">
- <gene reference="STM3733"/>
- </geneAssociation>
- <geneAssociation id="ga_1292" reaction="R_OXGDC2">
- <gene reference="STM2309"/>
- </geneAssociation>
- <geneAssociation id="ga_1293" reaction="R_P5CD">
- <gene reference="s0001"/>
- </geneAssociation>
- <geneAssociation id="ga_1294" reaction="R_P5CR">
- <gene reference="STM0386"/>
- </geneAssociation>
- <geneAssociation id="ga_1295" reaction="R_PA120abcpp">
- <gene reference="STM0984"/>
- </geneAssociation>
- <geneAssociation id="ga_1296" reaction="R_PA140abcpp">
- <gene reference="STM0984"/>
- </geneAssociation>
- <geneAssociation id="ga_1297" reaction="R_PA141abcpp">
- <gene reference="STM0984"/>
- </geneAssociation>
- <geneAssociation id="ga_1298" reaction="R_PA160abcpp">
- <gene reference="STM0984"/>
- </geneAssociation>
- <geneAssociation id="ga_1299" reaction="R_PA161abcpp">
- <gene reference="STM0984"/>
- </geneAssociation>
- <geneAssociation id="ga_1300" reaction="R_PA180abcpp">
- <gene reference="STM0984"/>
- </geneAssociation>
- <geneAssociation id="ga_1301" reaction="R_PA181abcpp">
- <gene reference="STM0984"/>
- </geneAssociation>
- <geneAssociation id="ga_1302" reaction="R_PACALDtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1303" reaction="R_PANTS">
- <gene reference="STM0181"/>
- </geneAssociation>
- <geneAssociation id="ga_1304" reaction="R_PAPA120">
- <gene reference="STM1710"/>
- </geneAssociation>
- <geneAssociation id="ga_1305" reaction="R_PAPA120pp">
- <gene reference="STM1710"/>
- </geneAssociation>
- <geneAssociation id="ga_1306" reaction="R_PAPA140">
- <gene reference="STM1710"/>
- </geneAssociation>
- <geneAssociation id="ga_1307" reaction="R_PAPA140pp">
- <gene reference="STM1710"/>
- </geneAssociation>
- <geneAssociation id="ga_1308" reaction="R_PAPA141">
- <gene reference="STM1710"/>
- </geneAssociation>
- <geneAssociation id="ga_1309" reaction="R_PAPA141pp">
- <gene reference="STM1710"/>
- </geneAssociation>
- <geneAssociation id="ga_1310" reaction="R_PAPA160">
- <gene reference="STM1710"/>
- </geneAssociation>
- <geneAssociation id="ga_1311" reaction="R_PAPA160pp">
- <gene reference="STM1710"/>
- </geneAssociation>
- <geneAssociation id="ga_1312" reaction="R_PAPA161">
- <gene reference="STM1710"/>
- </geneAssociation>
- <geneAssociation id="ga_1313" reaction="R_PAPA161pp">
- <gene reference="STM1710"/>
- </geneAssociation>
- <geneAssociation id="ga_1314" reaction="R_PAPA180">
- <gene reference="STM1710"/>
- </geneAssociation>
- <geneAssociation id="ga_1315" reaction="R_PAPA180pp">
- <gene reference="STM1710"/>
- </geneAssociation>
- <geneAssociation id="ga_1316" reaction="R_PAPA181">
- <gene reference="STM1710"/>
- </geneAssociation>
- <geneAssociation id="ga_1317" reaction="R_PAPA181pp">
- <gene reference="STM1710"/>
- </geneAssociation>
- <geneAssociation id="ga_1318" reaction="R_PAPPT3">
- <gene reference="STM0125"/>
- </geneAssociation>
- <geneAssociation id="ga_1319" reaction="R_PAPSR">
- <or>
- <and>
- <gene reference="STM2946"/>
- <gene reference="STM2649"/>
- </and>
- <and>
- <gene reference="STM2946"/>
- <gene reference="STM3915"/>
- </and>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1320" reaction="R_PAPSR2">
- <or>
- <and>
- <gene reference="STM2946"/>
- <gene reference="STM0872"/>
- </and>
- <and>
- <gene reference="STM2946"/>
- <gene reference="STM1165"/>
- </and>
- <and>
- <gene reference="STM2946"/>
- <gene reference="STM1433"/>
- </and>
- <and>
- <gene reference="STM2946"/>
- <gene reference="STM3702"/>
- </and>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1321" reaction="R_PDH">
- <and>
- <gene reference="STM0152"/>
- <gene reference="STM0153"/>
- <gene reference="STM0154"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1322" reaction="R_PDX5POi">
- <gene reference="STM1448"/>
- </geneAssociation>
- <geneAssociation id="ga_1323" reaction="R_PDX5PS">
- <and>
- <or>
- <gene reference="STM0091"/>
- <gene reference="STM0163"/>
- </or>
- <gene reference="STM2578"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1324" reaction="R_PE120abcpp">
- <gene reference="STM0984"/>
- </geneAssociation>
- <geneAssociation id="ga_1325" reaction="R_PE140abcpp">
- <gene reference="STM0984"/>
- </geneAssociation>
- <geneAssociation id="ga_1326" reaction="R_PE141abcpp">
- <gene reference="STM0984"/>
- </geneAssociation>
- <geneAssociation id="ga_1327" reaction="R_PE160abcpp">
- <gene reference="STM0984"/>
- </geneAssociation>
- <geneAssociation id="ga_1328" reaction="R_PE161abcpp">
- <gene reference="STM0984"/>
- </geneAssociation>
- <geneAssociation id="ga_1329" reaction="R_PE180abcpp">
- <gene reference="STM0984"/>
- </geneAssociation>
- <geneAssociation id="ga_1330" reaction="R_PE181abcpp">
- <gene reference="STM0984"/>
- </geneAssociation>
- <geneAssociation id="ga_1331" reaction="R_PEAMNtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1332" reaction="R_PERD">
- <gene reference="STM2370"/>
- </geneAssociation>
- <geneAssociation id="ga_1333" reaction="R_PETNT161pp">
- <gene reference="STM3635"/>
- </geneAssociation>
- <geneAssociation id="ga_1334" reaction="R_PETNT181pp">
- <gene reference="STM3635"/>
- </geneAssociation>
- <geneAssociation id="ga_1335" reaction="R_PFK">
- <or>
- <gene reference="STM4062"/>
- <gene reference="STM1326"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1336" reaction="R_PFK_2">
- <or>
- <gene reference="STM4062"/>
- <gene reference="STM3257"/>
- <gene reference="STM1326"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1337" reaction="R_PFL">
- <or>
- <and>
- <gene reference="STM0970"/>
- <gene reference="STM0973"/>
- </and>
- <and>
- <gene reference="STM0970"/>
- <gene reference="STM3241"/>
- </and>
- <and>
- <gene reference="STM4114"/>
- <gene reference="STM4115"/>
- </and>
- <and>
- <gene reference="STM0843"/>
- <gene reference="STM0844"/>
- </and>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1338" reaction="R_PG120abcpp">
- <gene reference="STM0984"/>
- </geneAssociation>
- <geneAssociation id="ga_1339" reaction="R_PG140abcpp">
- <gene reference="STM0984"/>
- </geneAssociation>
- <geneAssociation id="ga_1340" reaction="R_PG141abcpp">
- <gene reference="STM0984"/>
- </geneAssociation>
- <geneAssociation id="ga_1341" reaction="R_PG160abcpp">
- <gene reference="STM0984"/>
- </geneAssociation>
- <geneAssociation id="ga_1342" reaction="R_PG161abcpp">
- <gene reference="STM0984"/>
- </geneAssociation>
- <geneAssociation id="ga_1343" reaction="R_PG180abcpp">
- <gene reference="STM0984"/>
- </geneAssociation>
- <geneAssociation id="ga_1344" reaction="R_PG181abcpp">
- <gene reference="STM0984"/>
- </geneAssociation>
- <geneAssociation id="ga_1345" reaction="R_PGAMT">
- <gene reference="STM3294"/>
- </geneAssociation>
- <geneAssociation id="ga_1346" reaction="R_PGCD">
- <gene reference="STM3062"/>
- </geneAssociation>
- <geneAssociation id="ga_1347" reaction="R_PGI">
- <gene reference="STM4221"/>
- </geneAssociation>
- <geneAssociation id="ga_1348" reaction="R_PGK">
- <gene reference="STM3069"/>
- </geneAssociation>
- <geneAssociation id="ga_1349" reaction="R_PGL">
- <gene reference="STM0785"/>
- </geneAssociation>
- <geneAssociation id="ga_1350" reaction="R_PGLYCP">
- <gene reference="STM3482"/>
- </geneAssociation>
- <geneAssociation id="ga_1351" reaction="R_PGM">
- <or>
- <gene reference="STM3704"/>
- <gene reference="STM4585"/>
- <gene reference="STM0772"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1352" reaction="R_PGMT">
- <or>
- <gene reference="STM0698"/>
- <gene reference="STM2820"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1353" reaction="R_PGP120abcpp">
- <gene reference="STM0984"/>
- </geneAssociation>
- <geneAssociation id="ga_1354" reaction="R_PGP140abcpp">
- <gene reference="STM0984"/>
- </geneAssociation>
- <geneAssociation id="ga_1355" reaction="R_PGP141abcpp">
- <gene reference="STM0984"/>
- </geneAssociation>
- <geneAssociation id="ga_1356" reaction="R_PGP160abcpp">
- <gene reference="STM0984"/>
- </geneAssociation>
- <geneAssociation id="ga_1357" reaction="R_PGP161abcpp">
- <gene reference="STM0984"/>
- </geneAssociation>
- <geneAssociation id="ga_1358" reaction="R_PGP180abcpp">
- <gene reference="STM0984"/>
- </geneAssociation>
- <geneAssociation id="ga_1359" reaction="R_PGP181abcpp">
- <gene reference="STM0984"/>
- </geneAssociation>
- <geneAssociation id="ga_1360" reaction="R_PGPP120">
- <or>
- <gene reference="STM0420"/>
- <gene reference="STM1710"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1361" reaction="R_PGPP120pp">
- <or>
- <gene reference="STM1710"/>
- <gene reference="STM0420"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1362" reaction="R_PGPP140">
- <or>
- <gene reference="STM0420"/>
- <gene reference="STM1710"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1363" reaction="R_PGPP140pp">
- <or>
- <gene reference="STM1710"/>
- <gene reference="STM0420"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1364" reaction="R_PGPP141">
- <or>
- <gene reference="STM0420"/>
- <gene reference="STM1710"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1365" reaction="R_PGPP141pp">
- <or>
- <gene reference="STM0420"/>
- <gene reference="STM1710"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1366" reaction="R_PGPP160">
- <or>
- <gene reference="STM0420"/>
- <gene reference="STM1710"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1367" reaction="R_PGPP160pp">
- <or>
- <gene reference="STM0420"/>
- <gene reference="STM1710"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1368" reaction="R_PGPP161">
- <or>
- <gene reference="STM0420"/>
- <gene reference="STM1710"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1369" reaction="R_PGPP161pp">
- <or>
- <gene reference="STM1710"/>
- <gene reference="STM0420"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1370" reaction="R_PGPP180">
- <or>
- <gene reference="STM0420"/>
- <gene reference="STM1710"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1371" reaction="R_PGPP180pp">
- <or>
- <gene reference="STM1710"/>
- <gene reference="STM0420"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1372" reaction="R_PGPP181">
- <or>
- <gene reference="STM1710"/>
- <gene reference="STM0420"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1373" reaction="R_PGPP181pp">
- <or>
- <gene reference="STM0420"/>
- <gene reference="STM1710"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1374" reaction="R_PGSA120">
- <gene reference="STM1945"/>
- </geneAssociation>
- <geneAssociation id="ga_1375" reaction="R_PGSA140">
- <gene reference="STM1945"/>
- </geneAssociation>
- <geneAssociation id="ga_1376" reaction="R_PGSA141">
- <gene reference="STM1945"/>
- </geneAssociation>
- <geneAssociation id="ga_1377" reaction="R_PGSA160">
- <gene reference="STM1945"/>
- </geneAssociation>
- <geneAssociation id="ga_1378" reaction="R_PGSA161">
- <gene reference="STM1945"/>
- </geneAssociation>
- <geneAssociation id="ga_1379" reaction="R_PGSA180">
- <gene reference="STM1945"/>
- </geneAssociation>
- <geneAssociation id="ga_1380" reaction="R_PGSA181">
- <gene reference="STM1945"/>
- </geneAssociation>
- <geneAssociation id="ga_1381" reaction="R_PHEMEabcpp">
- <and>
- <gene reference="STM2254"/>
- <gene reference="STM2253"/>
- <gene reference="STM2252"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1382" reaction="R_PHETA1">
- <or>
- <gene reference="STM3903"/>
- <gene reference="STM0998"/>
- <gene reference="STM4248"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1383" reaction="R_PHETRS">
- <and>
- <gene reference="STM1338"/>
- <gene reference="STM1337"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1384" reaction="R_PHEt2rpp">
- <or>
- <gene reference="STM0568"/>
- <gene reference="STM0150"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1385" reaction="R_PHEtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1386" reaction="R_PIt2rpp">
- <gene reference="STM3589"/>
- </geneAssociation>
- <geneAssociation id="ga_1387" reaction="R_PItex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1388" reaction="R_PIuabcpp">
- <and>
- <gene reference="STM3855"/>
- <gene reference="STM3854"/>
- <gene reference="STM3856"/>
- <gene reference="STM3857"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1389" reaction="R_PLIPA1A120pp">
- <gene reference="STM3957"/>
- </geneAssociation>
- <geneAssociation id="ga_1390" reaction="R_PLIPA1A140pp">
- <gene reference="STM3957"/>
- </geneAssociation>
- <geneAssociation id="ga_1391" reaction="R_PLIPA1A141pp">
- <gene reference="STM3957"/>
- </geneAssociation>
- <geneAssociation id="ga_1392" reaction="R_PLIPA1A160pp">
- <gene reference="STM3957"/>
- </geneAssociation>
- <geneAssociation id="ga_1393" reaction="R_PLIPA1A161pp">
- <gene reference="STM3957"/>
- </geneAssociation>
- <geneAssociation id="ga_1394" reaction="R_PLIPA1A180pp">
- <gene reference="STM3957"/>
- </geneAssociation>
- <geneAssociation id="ga_1395" reaction="R_PLIPA1A181pp">
- <gene reference="STM3957"/>
- </geneAssociation>
- <geneAssociation id="ga_1396" reaction="R_PLIPA1E120pp">
- <gene reference="STM3957"/>
- </geneAssociation>
- <geneAssociation id="ga_1397" reaction="R_PLIPA1E140pp">
- <gene reference="STM3957"/>
- </geneAssociation>
- <geneAssociation id="ga_1398" reaction="R_PLIPA1E141pp">
- <gene reference="STM3957"/>
- </geneAssociation>
- <geneAssociation id="ga_1399" reaction="R_PLIPA1E160pp">
- <gene reference="STM3957"/>
- </geneAssociation>
- <geneAssociation id="ga_1400" reaction="R_PLIPA1E161pp">
- <gene reference="STM3957"/>
- </geneAssociation>
- <geneAssociation id="ga_1401" reaction="R_PLIPA1E180pp">
- <gene reference="STM3957"/>
- </geneAssociation>
- <geneAssociation id="ga_1402" reaction="R_PLIPA1E181pp">
- <gene reference="STM3957"/>
- </geneAssociation>
- <geneAssociation id="ga_1403" reaction="R_PLIPA1G120pp">
- <gene reference="STM3957"/>
- </geneAssociation>
- <geneAssociation id="ga_1404" reaction="R_PLIPA1G140pp">
- <gene reference="STM3957"/>
- </geneAssociation>
- <geneAssociation id="ga_1405" reaction="R_PLIPA1G141pp">
- <gene reference="STM3957"/>
- </geneAssociation>
- <geneAssociation id="ga_1406" reaction="R_PLIPA1G160pp">
- <gene reference="STM3957"/>
- </geneAssociation>
- <geneAssociation id="ga_1407" reaction="R_PLIPA1G161pp">
- <gene reference="STM3957"/>
- </geneAssociation>
- <geneAssociation id="ga_1408" reaction="R_PLIPA1G180pp">
- <gene reference="STM3957"/>
- </geneAssociation>
- <geneAssociation id="ga_1409" reaction="R_PLIPA1G181pp">
- <gene reference="STM3957"/>
- </geneAssociation>
- <geneAssociation id="ga_1410" reaction="R_PLIPA2A120pp">
- <gene reference="STM3957"/>
- </geneAssociation>
- <geneAssociation id="ga_1411" reaction="R_PLIPA2A140pp">
- <gene reference="STM3957"/>
- </geneAssociation>
- <geneAssociation id="ga_1412" reaction="R_PLIPA2A141pp">
- <gene reference="STM3957"/>
- </geneAssociation>
- <geneAssociation id="ga_1413" reaction="R_PLIPA2A160pp">
- <gene reference="STM3957"/>
- </geneAssociation>
- <geneAssociation id="ga_1414" reaction="R_PLIPA2A161pp">
- <gene reference="STM3957"/>
- </geneAssociation>
- <geneAssociation id="ga_1415" reaction="R_PLIPA2A180pp">
- <gene reference="STM3957"/>
- </geneAssociation>
- <geneAssociation id="ga_1416" reaction="R_PLIPA2A181pp">
- <gene reference="STM3957"/>
- </geneAssociation>
- <geneAssociation id="ga_1417" reaction="R_PLIPA2E120pp">
- <gene reference="STM3957"/>
- </geneAssociation>
- <geneAssociation id="ga_1418" reaction="R_PLIPA2E140pp">
- <gene reference="STM3957"/>
- </geneAssociation>
- <geneAssociation id="ga_1419" reaction="R_PLIPA2E141pp">
- <gene reference="STM3957"/>
- </geneAssociation>
- <geneAssociation id="ga_1420" reaction="R_PLIPA2E160pp">
- <gene reference="STM3957"/>
- </geneAssociation>
- <geneAssociation id="ga_1421" reaction="R_PLIPA2E161pp">
- <gene reference="STM3957"/>
- </geneAssociation>
- <geneAssociation id="ga_1422" reaction="R_PLIPA2E180pp">
- <gene reference="STM3957"/>
- </geneAssociation>
- <geneAssociation id="ga_1423" reaction="R_PLIPA2E181pp">
- <gene reference="STM3957"/>
- </geneAssociation>
- <geneAssociation id="ga_1424" reaction="R_PLIPA2G120pp">
- <gene reference="STM3957"/>
- </geneAssociation>
- <geneAssociation id="ga_1425" reaction="R_PLIPA2G140pp">
- <gene reference="STM3957"/>
- </geneAssociation>
- <geneAssociation id="ga_1426" reaction="R_PLIPA2G141pp">
- <gene reference="STM3957"/>
- </geneAssociation>
- <geneAssociation id="ga_1427" reaction="R_PLIPA2G160pp">
- <gene reference="STM3957"/>
- </geneAssociation>
- <geneAssociation id="ga_1428" reaction="R_PLIPA2G161pp">
- <gene reference="STM3957"/>
- </geneAssociation>
- <geneAssociation id="ga_1429" reaction="R_PLIPA2G180pp">
- <gene reference="STM3957"/>
- </geneAssociation>
- <geneAssociation id="ga_1430" reaction="R_PLIPA2G181pp">
- <gene reference="STM3957"/>
- </geneAssociation>
- <geneAssociation id="ga_1431" reaction="R_PMPK">
- <gene reference="STM2146"/>
- </geneAssociation>
- <geneAssociation id="ga_1432" reaction="R_PNTK">
- <gene reference="STM4139"/>
- </geneAssociation>
- <geneAssociation id="ga_1433" reaction="R_PNTOt4pp">
- <gene reference="STM3382"/>
- </geneAssociation>
- <geneAssociation id="ga_1434" reaction="R_PNTOtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1435" reaction="R_POX">
- <gene reference="STM0935"/>
- </geneAssociation>
- <geneAssociation id="ga_1436" reaction="R_PPA">
- <or>
- <gene reference="STM4414"/>
- <gene reference="STM2502"/>
- <gene reference="STM2927"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1437" reaction="R_PPA2">
- <or>
- <gene reference="STM2927"/>
- <gene reference="STM2502"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1438" reaction="R_PPAKr">
- <or>
- <gene reference="STM3242"/>
- <gene reference="STM2057"/>
- <gene reference="STM2337"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1439" reaction="R_PPALtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1440" reaction="R_PPAt4pp">
- <gene reference="STM1125"/>
- </geneAssociation>
- <geneAssociation id="ga_1441" reaction="R_PPAtex">
- <or>
- <gene reference="STM1473"/>
- <gene reference="STM0999"/>
- <gene reference="STM2267"/>
- <gene reference="STM0320"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1442" reaction="R_PPBNGS">
- <gene reference="STM0372"/>
- </geneAssociation>
- <geneAssociation id="ga_1443" reaction="R_PPC">
- <gene reference="STM4119"/>
- </geneAssociation>
- <geneAssociation id="ga_1444" reaction="R_PPCDC">
- <gene reference="STM3730"/>
- </geneAssociation>
- <geneAssociation id="ga_1445" reaction="R_PPCK">
- <gene reference="STM3500"/>
- </geneAssociation>
- <geneAssociation id="ga_1446" reaction="R_PPGPPDP">
- <gene reference="STM3742"/>
- </geneAssociation>
- <geneAssociation id="ga_1447" reaction="R_PPK2r">
- <gene reference="STM2501"/>
- </geneAssociation>
- <geneAssociation id="ga_1448" reaction="R_PPKr">
- <gene reference="STM2501"/>
- </geneAssociation>
- <geneAssociation id="ga_1449" reaction="R_PPM">
- <gene reference="STM4569"/>
- </geneAssociation>
- <geneAssociation id="ga_1450" reaction="R_PPM2">
- <gene reference="STM4569"/>
- </geneAssociation>
- <geneAssociation id="ga_1451" reaction="R_PPNCL2">
- <gene reference="STM3730"/>
- </geneAssociation>
- <geneAssociation id="ga_1452" reaction="R_PPND">
- <gene reference="STM2669"/>
- </geneAssociation>
- <geneAssociation id="ga_1453" reaction="R_PPNDH">
- <gene reference="STM2667"/>
- </geneAssociation>
- <geneAssociation id="ga_1454" reaction="R_PPPGO">
- <gene reference="STM3987"/>
- </geneAssociation>
- <geneAssociation id="ga_1455" reaction="R_PPPGO3">
- <gene reference="STM3987"/>
- </geneAssociation>
- <geneAssociation id="ga_1456" reaction="R_PPPNt2rpp">
- <gene reference="STM2554"/>
- </geneAssociation>
- <geneAssociation id="ga_1457" reaction="R_PPPNtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1458" reaction="R_PPS">
- <gene reference="STM1349"/>
- </geneAssociation>
- <geneAssociation id="ga_1459" reaction="R_PPTtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1460" reaction="R_PRAGSr">
- <gene reference="STM4175"/>
- </geneAssociation>
- <geneAssociation id="ga_1461" reaction="R_PRAIS">
- <gene reference="STM2499.S"/>
- </geneAssociation>
- <geneAssociation id="ga_1462" reaction="R_PRAIi">
- <gene reference="STM1725"/>
- </geneAssociation>
- <geneAssociation id="ga_1463" reaction="R_PRAMPC">
- <gene reference="STM2078"/>
- </geneAssociation>
- <geneAssociation id="ga_1464" reaction="R_PRASCSi">
- <gene reference="STM2487"/>
- </geneAssociation>
- <geneAssociation id="ga_1465" reaction="R_PRATPP">
- <gene reference="STM2078"/>
- </geneAssociation>
- <geneAssociation id="ga_1466" reaction="R_PRFGS">
- <gene reference="STM2565"/>
- </geneAssociation>
- <geneAssociation id="ga_1467" reaction="R_PRMICI">
- <gene reference="STM2076"/>
- </geneAssociation>
- <geneAssociation id="ga_1468" reaction="R_PROD2">
- <gene reference="s0001"/>
- </geneAssociation>
- <geneAssociation id="ga_1469" reaction="R_PROGLYabcpp">
- <and>
- <gene reference="STM3630"/>
- <gene reference="STM3629"/>
- <gene reference="STM3628"/>
- <gene reference="STM3627"/>
- <gene reference="STM3626"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1470" reaction="R_PROGLYtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1471" reaction="R_PROTRS">
- <gene reference="STM0242"/>
- </geneAssociation>
- <geneAssociation id="ga_1472" reaction="R_PROabcpp">
- <and>
- <gene reference="STM2809"/>
- <gene reference="STM2810"/>
- <gene reference="STM2811"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1473" reaction="R_PROt4pp">
- <gene reference="STM1125"/>
- </geneAssociation>
- <geneAssociation id="ga_1474" reaction="R_PROtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1475" reaction="R_PRPPS">
- <gene reference="STM1780"/>
- </geneAssociation>
- <geneAssociation id="ga_1476" reaction="R_PSCLYStex">
- <or>
- <gene reference="STM2267"/>
- <gene reference="STM1473"/>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1477" reaction="R_PSCVT">
- <gene reference="STM0978"/>
- </geneAssociation>
- <geneAssociation id="ga_1478" reaction="R_PSD120">
- <gene reference="STM4348"/>
- </geneAssociation>
- <geneAssociation id="ga_1479" reaction="R_PSD140">
- <gene reference="STM4348"/>
- </geneAssociation>
- <geneAssociation id="ga_1480" reaction="R_PSD141">
- <gene reference="STM4348"/>
- </geneAssociation>
- <geneAssociation id="ga_1481" reaction="R_PSD160">
- <gene reference="STM4348"/>
- </geneAssociation>
- <geneAssociation id="ga_1482" reaction="R_PSD161">
- <gene reference="STM4348"/>
- </geneAssociation>
- <geneAssociation id="ga_1483" reaction="R_PSD180">
- <gene reference="STM4348"/>
- </geneAssociation>
- <geneAssociation id="ga_1484" reaction="R_PSD181">
- <gene reference="STM4348"/>
- </geneAssociation>
- <geneAssociation id="ga_1485" reaction="R_PSERT">
- <gene reference="STM0977"/>
- </geneAssociation>
- <geneAssociation id="ga_1486" reaction="R_PSERtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1487" reaction="R_PSP_L">
- <gene reference="STM4578"/>
- </geneAssociation>
- <geneAssociation id="ga_1488" reaction="R_PSP_Lpp">
- <gene reference="STM4249"/>
- </geneAssociation>
- <geneAssociation id="ga_1489" reaction="R_PSSA120">
- <gene reference="STM2652"/>
- </geneAssociation>
- <geneAssociation id="ga_1490" reaction="R_PSSA140">
- <gene reference="STM2652"/>
- </geneAssociation>
- <geneAssociation id="ga_1491" reaction="R_PSSA141">
- <gene reference="STM2652"/>
- </geneAssociation>
- <geneAssociation id="ga_1492" reaction="R_PSSA160">
- <gene reference="STM2652"/>
- </geneAssociation>
- <geneAssociation id="ga_1493" reaction="R_PSSA161">
- <gene reference="STM2652"/>
- </geneAssociation>
- <geneAssociation id="ga_1494" reaction="R_PSSA180">
- <gene reference="STM2652"/>
- </geneAssociation>
- <geneAssociation id="ga_1495" reaction="R_PSSA181">
- <gene reference="STM2652"/>
- </geneAssociation>
- <geneAssociation id="ga_1496" reaction="R_PTA2">
- <or>
- <gene reference="STM2338"/>
- <gene reference="STM2047"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1497" reaction="R_PTAr">
- <or>
- <gene reference="STM2338"/>
- <gene reference="STM2466"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1498" reaction="R_PTHRpp">
- <gene reference="STM4249"/>
- </geneAssociation>
- <geneAssociation id="ga_1499" reaction="R_PTPATi">
- <gene reference="STM3725"/>
- </geneAssociation>
- <geneAssociation id="ga_1500" reaction="R_PTRCORNt7pp">
- <gene reference="STM0700"/>
- </geneAssociation>
- <geneAssociation id="ga_1501" reaction="R_PTRCTA">
- <gene reference="STM3218"/>
- </geneAssociation>
- <geneAssociation id="ga_1502" reaction="R_PTRCabcpp">
- <or>
- <and>
- <gene reference="STM0877"/>
- <gene reference="STM0878"/>
- <gene reference="STM0879"/>
- <gene reference="STM0880"/>
- </and>
- <and>
- <gene reference="STM1226"/>
- <gene reference="STM1225"/>
- <gene reference="STM1223"/>
- <gene reference="STM1222"/>
- </and>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1503" reaction="R_PTRCt2pp">
- <gene reference="STM0700"/>
- </geneAssociation>
- <geneAssociation id="ga_1504" reaction="R_PTRCtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1505" reaction="R_PUNP1">
- <gene reference="STM4570"/>
- </geneAssociation>
- <geneAssociation id="ga_1506" reaction="R_PUNP2">
- <gene reference="STM4570"/>
- </geneAssociation>
- <geneAssociation id="ga_1507" reaction="R_PUNP3">
- <gene reference="STM4570"/>
- </geneAssociation>
- <geneAssociation id="ga_1508" reaction="R_PUNP4">
- <gene reference="STM4570"/>
- </geneAssociation>
- <geneAssociation id="ga_1509" reaction="R_PUNP5">
- <gene reference="STM4570"/>
- </geneAssociation>
- <geneAssociation id="ga_1510" reaction="R_PUNP6">
- <gene reference="STM4570"/>
- </geneAssociation>
- <geneAssociation id="ga_1511" reaction="R_PUNP7">
- <gene reference="s0001"/>
- </geneAssociation>
- <geneAssociation id="ga_1512" reaction="R_PYAM5PO">
- <gene reference="STM1448"/>
- </geneAssociation>
- <geneAssociation id="ga_1513" reaction="R_PYDAMK">
- <gene reference="STM2435"/>
- </geneAssociation>
- <geneAssociation id="ga_1514" reaction="R_PYDXK">
- <or>
- <gene reference="STM2435"/>
- <gene reference="STM1450"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1515" reaction="R_PYDXNK">
- <gene reference="STM2435"/>
- </geneAssociation>
- <geneAssociation id="ga_1516" reaction="R_PYK">
- <or>
- <gene reference="STM1888"/>
- <gene reference="STM1378"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1517" reaction="R_PYNP2r">
- <gene reference="STM3968"/>
- </geneAssociation>
- <geneAssociation id="ga_1518" reaction="R_PYRtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1519" reaction="R_QMO2">
- <gene reference="STM3180"/>
- </geneAssociation>
- <geneAssociation id="ga_1520" reaction="R_QMO3">
- <gene reference="STM3180"/>
- </geneAssociation>
- <geneAssociation id="ga_1521" reaction="R_QULNS">
- <gene reference="STM0756"/>
- </geneAssociation>
- <geneAssociation id="ga_1522" reaction="R_R5PP">
- <or>
- <gene reference="STM0840"/>
- <gene reference="STM0842"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1523" reaction="R_R5PPpp">
- <gene reference="STM4249"/>
- </geneAssociation>
- <geneAssociation id="ga_1524" reaction="R_R5Ptex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1525" reaction="R_RBFK">
- <gene reference="STM0045"/>
- </geneAssociation>
- <geneAssociation id="ga_1526" reaction="R_RBFSa">
- <gene reference="STM1426"/>
- </geneAssociation>
- <geneAssociation id="ga_1527" reaction="R_RBFSb">
- <gene reference="STM0417"/>
- </geneAssociation>
- <geneAssociation id="ga_1528" reaction="R_RBK">
- <or>
- <gene reference="STM3885"/>
- <gene reference="STM3793"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1529" reaction="R_RBK_L1">
- <gene reference="STM0103"/>
- </geneAssociation>
- <geneAssociation id="ga_1530" reaction="R_RBP4E">
- <or>
- <gene reference="STM0101"/>
- <gene reference="STM4388"/>
- <gene reference="STM3677"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1531" reaction="R_RHAT1">
- <gene reference="STM3720"/>
- </geneAssociation>
- <geneAssociation id="ga_1532" reaction="R_RHCCE">
- <gene reference="STM2817"/>
- </geneAssociation>
- <geneAssociation id="ga_1533" reaction="R_RIBabcpp">
- <and>
- <gene reference="STM3882"/>
- <gene reference="STM3884"/>
- <gene reference="STM3883"/>
- <gene reference="STM3881"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1534" reaction="R_RIBtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1535" reaction="R_RMI">
- <gene reference="STM4046"/>
- </geneAssociation>
- <geneAssociation id="ga_1536" reaction="R_RMK">
- <gene reference="STM4047"/>
- </geneAssociation>
- <geneAssociation id="ga_1537" reaction="R_RMNtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1538" reaction="R_RMNtpp">
- <gene reference="STM4050"/>
- </geneAssociation>
- <geneAssociation id="ga_1539" reaction="R_RMPA">
- <gene reference="STM4045"/>
- </geneAssociation>
- <geneAssociation id="ga_1540" reaction="R_RNDR1">
- <or>
- <and>
- <gene reference="STM2277"/>
- <gene reference="STM2278"/>
- </and>
- <and>
- <gene reference="STM2807"/>
- <gene reference="STM2808"/>
- </and>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1541" reaction="R_RNDR1b">
- <or>
- <and>
- <gene reference="STM1433"/>
- <gene reference="STM2807"/>
- <gene reference="STM2808"/>
- </and>
- <and>
- <gene reference="STM0872"/>
- <gene reference="STM2807"/>
- <gene reference="STM2808"/>
- </and>
- <and>
- <gene reference="STM1165"/>
- <gene reference="STM2807"/>
- <gene reference="STM2808"/>
- </and>
- <and>
- <gene reference="STM3702"/>
- <gene reference="STM2807"/>
- <gene reference="STM2808"/>
- </and>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1542" reaction="R_RNDR2">
- <or>
- <and>
- <gene reference="STM2277"/>
- <gene reference="STM2278"/>
- </and>
- <and>
- <gene reference="STM2807"/>
- <gene reference="STM2808"/>
- </and>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1543" reaction="R_RNDR2b">
- <or>
- <and>
- <gene reference="STM3702"/>
- <gene reference="STM2807"/>
- <gene reference="STM2808"/>
- </and>
- <and>
- <gene reference="STM1165"/>
- <gene reference="STM2807"/>
- <gene reference="STM2808"/>
- </and>
- <and>
- <gene reference="STM1433"/>
- <gene reference="STM2807"/>
- <gene reference="STM2808"/>
- </and>
- <and>
- <gene reference="STM0872"/>
- <gene reference="STM2807"/>
- <gene reference="STM2808"/>
- </and>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1544" reaction="R_RNDR3">
- <or>
- <and>
- <gene reference="STM2277"/>
- <gene reference="STM2278"/>
- </and>
- <and>
- <gene reference="STM2807"/>
- <gene reference="STM2808"/>
- </and>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1545" reaction="R_RNDR3b">
- <or>
- <and>
- <gene reference="STM1433"/>
- <gene reference="STM2807"/>
- <gene reference="STM2808"/>
- </and>
- <and>
- <gene reference="STM1165"/>
- <gene reference="STM2807"/>
- <gene reference="STM2808"/>
- </and>
- <and>
- <gene reference="STM0872"/>
- <gene reference="STM2807"/>
- <gene reference="STM2808"/>
- </and>
- <and>
- <gene reference="STM3702"/>
- <gene reference="STM2807"/>
- <gene reference="STM2808"/>
- </and>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1546" reaction="R_RNDR4">
- <or>
- <and>
- <gene reference="STM2277"/>
- <gene reference="STM2278"/>
- </and>
- <and>
- <gene reference="STM2807"/>
- <gene reference="STM2808"/>
- </and>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1547" reaction="R_RNDR4b">
- <or>
- <and>
- <gene reference="STM1165"/>
- <gene reference="STM2807"/>
- <gene reference="STM2808"/>
- </and>
- <and>
- <gene reference="STM3702"/>
- <gene reference="STM2807"/>
- <gene reference="STM2808"/>
- </and>
- <and>
- <gene reference="STM1433"/>
- <gene reference="STM2807"/>
- <gene reference="STM2808"/>
- </and>
- <and>
- <gene reference="STM0872"/>
- <gene reference="STM2807"/>
- <gene reference="STM2808"/>
- </and>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1548" reaction="R_RNTR1c">
- <or>
- <and>
- <gene reference="STM3045"/>
- <gene reference="STM4084"/>
- <gene reference="STM4452"/>
- <gene reference="STM4451"/>
- </and>
- <and>
- <gene reference="STM3045"/>
- <gene reference="STM4452"/>
- </and>
- <and>
- <gene reference="STM0694"/>
- <gene reference="STM4452"/>
- </and>
- <and>
- <gene reference="STM0694"/>
- <gene reference="STM4084"/>
- <gene reference="STM4452"/>
- <gene reference="STM4451"/>
- </and>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1549" reaction="R_RNTR2c">
- <or>
- <and>
- <gene reference="STM0694"/>
- <gene reference="STM4452"/>
- </and>
- <and>
- <gene reference="STM3045"/>
- <gene reference="STM4452"/>
- </and>
- <and>
- <gene reference="STM3045"/>
- <gene reference="STM4084"/>
- <gene reference="STM4452"/>
- <gene reference="STM4451"/>
- </and>
- <and>
- <gene reference="STM0694"/>
- <gene reference="STM4084"/>
- <gene reference="STM4452"/>
- <gene reference="STM4451"/>
- </and>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1550" reaction="R_RNTR3c">
- <or>
- <and>
- <gene reference="STM3045"/>
- <gene reference="STM4452"/>
- </and>
- <and>
- <gene reference="STM0694"/>
- <gene reference="STM4084"/>
- <gene reference="STM4452"/>
- <gene reference="STM4451"/>
- </and>
- <and>
- <gene reference="STM0694"/>
- <gene reference="STM4452"/>
- </and>
- <and>
- <gene reference="STM3045"/>
- <gene reference="STM4084"/>
- <gene reference="STM4452"/>
- <gene reference="STM4451"/>
- </and>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1551" reaction="R_RNTR4c">
- <or>
- <and>
- <gene reference="STM0694"/>
- <gene reference="STM4084"/>
- <gene reference="STM4452"/>
- <gene reference="STM4451"/>
- </and>
- <and>
- <gene reference="STM3045"/>
- <gene reference="STM4452"/>
- </and>
- <and>
- <gene reference="STM0694"/>
- <gene reference="STM4452"/>
- </and>
- <and>
- <gene reference="STM3045"/>
- <gene reference="STM4084"/>
- <gene reference="STM4452"/>
- <gene reference="STM4451"/>
- </and>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1552" reaction="R_RPE">
- <or>
- <gene reference="STM3483"/>
- <gene reference="STM4080"/>
- <gene reference="STM1617"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1553" reaction="R_RPI">
- <or>
- <gene reference="STM3063"/>
- <gene reference="STM1933"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1554" reaction="R_S7PI">
- <gene reference="STM0310"/>
- </geneAssociation>
- <geneAssociation id="ga_1555" reaction="R_SADH">
- <gene reference="STM1306"/>
- </geneAssociation>
- <geneAssociation id="ga_1556" reaction="R_SADT2">
- <and>
- <gene reference="STM2934"/>
- <gene reference="STM2935"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1557" reaction="R_SBTPD">
- <gene reference="STM2835"/>
- </geneAssociation>
- <geneAssociation id="ga_1558" reaction="R_SBTptspp">
- <and>
- <gene reference="STM2431"/>
- <gene reference="STM2432"/>
- <gene reference="STM2832"/>
- <gene reference="STM2834"/>
- <gene reference="STM2833"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1559" reaction="R_SBTtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1560" reaction="R_SDPDS">
- <gene reference="STM2483"/>
- </geneAssociation>
- <geneAssociation id="ga_1561" reaction="R_SDPTA">
- <gene reference="STM3468"/>
- </geneAssociation>
- <geneAssociation id="ga_1562" reaction="R_SELCYSS">
- <gene reference="STM3683"/>
- </geneAssociation>
- <geneAssociation id="ga_1563" reaction="R_SELNPS">
- <gene reference="STM1297"/>
- </geneAssociation>
- <geneAssociation id="ga_1564" reaction="R_SERASr">
- <gene reference="STM0588"/>
- </geneAssociation>
- <geneAssociation id="ga_1565" reaction="R_SERAT">
- <gene reference="STM3699"/>
- </geneAssociation>
- <geneAssociation id="ga_1566" reaction="R_SERD_D">
- <gene reference="STM3802"/>
- </geneAssociation>
- <geneAssociation id="ga_1567" reaction="R_SERTRS">
- <gene reference="STM0963"/>
- </geneAssociation>
- <geneAssociation id="ga_1568" reaction="R_SERTRS2">
- <gene reference="STM0963"/>
- </geneAssociation>
- <geneAssociation id="ga_1569" reaction="R_SERt2rpp">
- <or>
- <gene reference="STM2970"/>
- <gene reference="STM3243"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1570" reaction="R_SERt4pp">
- <gene reference="STM3225"/>
- </geneAssociation>
- <geneAssociation id="ga_1571" reaction="R_SERtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1572" reaction="R_SFGTHi">
- <gene reference="STM2194"/>
- </geneAssociation>
- <geneAssociation id="ga_1573" reaction="R_SGDS">
- <gene reference="STM1307"/>
- </geneAssociation>
- <geneAssociation id="ga_1574" reaction="R_SGSAD">
- <gene reference="STM1305"/>
- </geneAssociation>
- <geneAssociation id="ga_1575" reaction="R_SHCHCS2">
- <gene reference="STM2309"/>
- </geneAssociation>
- <geneAssociation id="ga_1576" reaction="R_SHCHD2">
- <gene reference="STM3477"/>
- </geneAssociation>
- <geneAssociation id="ga_1577" reaction="R_SHCHF">
- <gene reference="STM3477"/>
- </geneAssociation>
- <geneAssociation id="ga_1578" reaction="R_SHK3Dr">
- <or>
- <gene reference="STM1359"/>
- <gene reference="STM3401"/>
- <gene reference="STM3859"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1579" reaction="R_SHKK">
- <or>
- <gene reference="STM3487"/>
- <gene reference="STM0388"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1580" reaction="R_SKMtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1581" reaction="R_SO2tex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1582" reaction="R_SO2tpp">
- <gene reference="s0001"/>
- </geneAssociation>
- <geneAssociation id="ga_1583" reaction="R_SO3tex">
- <or>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1584" reaction="R_SO4tex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1585" reaction="R_SOTA">
- <gene reference="STM1303"/>
- </geneAssociation>
- <geneAssociation id="ga_1586" reaction="R_SPMDAT1">
- <gene reference="STM1502"/>
- </geneAssociation>
- <geneAssociation id="ga_1587" reaction="R_SPMDAT2">
- <gene reference="STM1502"/>
- </geneAssociation>
- <geneAssociation id="ga_1588" reaction="R_SPMDabcpp">
- <and>
- <gene reference="STM1226"/>
- <gene reference="STM1225"/>
- <gene reference="STM1223"/>
- <gene reference="STM1222"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1589" reaction="R_SPMDtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1590" reaction="R_SPMS">
- <gene reference="STM0166"/>
- </geneAssociation>
- <geneAssociation id="ga_1591" reaction="R_SPODM">
- <or>
- <gene reference="STM4055"/>
- <gene reference="STM1431"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1592" reaction="R_SPODMpp">
- <or>
- <gene reference="STM1440"/>
- <gene reference="STM1044"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1593" reaction="R_SSALy">
- <gene reference="STM2791"/>
- </geneAssociation>
- <geneAssociation id="ga_1594" reaction="R_SUCBZL">
- <gene reference="STM2305"/>
- </geneAssociation>
- <geneAssociation id="ga_1595" reaction="R_SUCBZS">
- <gene reference="STM2306"/>
- </geneAssociation>
- <geneAssociation id="ga_1596" reaction="R_SUCCt2_2pp">
- <gene reference="STM3614"/>
- </geneAssociation>
- <geneAssociation id="ga_1597" reaction="R_SUCCtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1598" reaction="R_SUCDi">
- <and>
- <gene reference="STM0732"/>
- <gene reference="STM0733"/>
- <gene reference="STM0734"/>
- <gene reference="STM0735"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1599" reaction="R_SUCOAS">
- <and>
- <gene reference="STM0738"/>
- <gene reference="STM0739"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1600" reaction="R_SUCRtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1601" reaction="R_SULFACtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1602" reaction="R_SULRi">
- <and>
- <gene reference="STM2947"/>
- <gene reference="STM2948"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1603" reaction="R_SULabcpp">
- <or>
- <and>
- <gene reference="STM2441"/>
- <gene reference="STM2443"/>
- <gene reference="STM2442"/>
- <gene reference="STM4063"/>
- </and>
- <and>
- <gene reference="STM0781"/>
- <gene reference="STM0782"/>
- <gene reference="STM0783"/>
- </and>
- <and>
- <gene reference="STM2441"/>
- <gene reference="STM2444"/>
- <gene reference="STM2443"/>
- <gene reference="STM2442"/>
- </and>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1604" reaction="R_T2DECAI">
- <gene reference="STM1067"/>
- </geneAssociation>
- <geneAssociation id="ga_1605" reaction="R_TALA">
- <or>
- <gene reference="STM2473"/>
- <gene reference="STM0007"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1606" reaction="R_TARTRtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1607" reaction="R_TAURtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1608" reaction="R_TCYNTtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1609" reaction="R_TDECOAI">
- <gene reference="STM3983"/>
- </geneAssociation>
- <geneAssociation id="ga_1610" reaction="R_TDP">
- <gene reference="STM1235"/>
- </geneAssociation>
- <geneAssociation id="ga_1611" reaction="R_TDPADGAT">
- <gene reference="STM3924"/>
- </geneAssociation>
- <geneAssociation id="ga_1612" reaction="R_TDPAGTA">
- <gene reference="STM3925"/>
- </geneAssociation>
- <geneAssociation id="ga_1613" reaction="R_TDPDRE">
- <gene reference="STM2094"/>
- </geneAssociation>
- <geneAssociation id="ga_1614" reaction="R_TDPDRR">
- <gene reference="STM2096"/>
- </geneAssociation>
- <geneAssociation id="ga_1615" reaction="R_TDPGDH">
- <or>
- <gene reference="STM2097"/>
- <gene reference="STM3922"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1616" reaction="R_TDSK">
- <gene reference="STM0985"/>
- </geneAssociation>
- <geneAssociation id="ga_1617" reaction="R_TDSR1">
- <and>
- <gene reference="STM3043"/>
- <gene reference="STM4323"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1618" reaction="R_TDSR2">
- <and>
- <gene reference="STM4323"/>
- <gene reference="STM0607"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1619" reaction="R_THD2pp">
- <and>
- <gene reference="STM1480"/>
- <gene reference="STM1479"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1620" reaction="R_THDPS">
- <gene reference="STM0213"/>
- </geneAssociation>
- <geneAssociation id="ga_1621" reaction="R_THIORDXi">
- <and>
- <or>
- <and>
- <gene reference="STM0609"/>
- <gene reference="STM0608"/>
- </and>
- <and>
- <gene reference="STM0609"/>
- <gene reference="STM0402"/>
- </and>
- </or>
- <or>
- <gene reference="STM2649"/>
- <gene reference="STM3915"/>
- </or>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1622" reaction="R_THMDt2pp">
- <or>
- <gene reference="STM3113"/>
- <gene reference="STM2409"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1623" reaction="R_THMDt2rpp">
- <gene reference="STM2421"/>
- </geneAssociation>
- <geneAssociation id="ga_1624" reaction="R_THMDtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1625" reaction="R_THMabcpp">
- <and>
- <gene reference="STM0108"/>
- <gene reference="STM0107"/>
- <gene reference="STM0106"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1626" reaction="R_THMtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1627" reaction="R_THRA2i">
- <or>
- <gene reference="STM2555"/>
- <gene reference="STM0934"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1628" reaction="R_THRAi">
- <or>
- <gene reference="STM2555"/>
- <gene reference="STM0934"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1629" reaction="R_THRD">
- <gene reference="STM3708"/>
- </geneAssociation>
- <geneAssociation id="ga_1630" reaction="R_THRD_L">
- <or>
- <gene reference="STM3244"/>
- <gene reference="STM1826"/>
- <gene reference="STM2971"/>
- <gene reference="STM3905"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1631" reaction="R_THRPtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1632" reaction="R_THRS">
- <gene reference="STM0004"/>
- </geneAssociation>
- <geneAssociation id="ga_1633" reaction="R_THRTRS">
- <gene reference="STM1333"/>
- </geneAssociation>
- <geneAssociation id="ga_1634" reaction="R_THRabcpp">
- <and>
- <gene reference="STM3560"/>
- <gene reference="STM3561"/>
- <gene reference="STM3563"/>
- <gene reference="STM3567"/>
- <gene reference="STM3562"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1635" reaction="R_THRt2pp">
- <or>
- <gene reference="STM0832"/>
- <gene reference="STM3959"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1636" reaction="R_THRt2rpp">
- <gene reference="STM3243"/>
- </geneAssociation>
- <geneAssociation id="ga_1637" reaction="R_THRt4pp">
- <gene reference="STM3225"/>
- </geneAssociation>
- <geneAssociation id="ga_1638" reaction="R_THRtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1639" reaction="R_THYMtex">
- <or>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1640" reaction="R_TKT1">
- <or>
- <gene reference="STM3076"/>
- <gene reference="STM2474"/>
- <gene reference="STM2341"/>
- <gene reference="STM2340"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1641" reaction="R_TKT2">
- <or>
- <gene reference="STM3076"/>
- <gene reference="STM2474"/>
- <gene reference="STM2341"/>
- <gene reference="STM2340"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1642" reaction="R_TMAOR1pp">
- <and>
- <gene reference="STM3823"/>
- <gene reference="STM3822"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1643" reaction="R_TMAOR2pp">
- <and>
- <gene reference="STM3823"/>
- <gene reference="STM3822"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1644" reaction="R_TMAOtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1645" reaction="R_TMAtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1646" reaction="R_TMDK1">
- <gene reference="STM1750"/>
- </geneAssociation>
- <geneAssociation id="ga_1647" reaction="R_TMDPP">
- <gene reference="STM4568"/>
- </geneAssociation>
- <geneAssociation id="ga_1648" reaction="R_TMDS">
- <gene reference="STM3001"/>
- </geneAssociation>
- <geneAssociation id="ga_1649" reaction="R_TMK">
- <gene reference="STM1208"/>
- </geneAssociation>
- <geneAssociation id="ga_1650" reaction="R_TMPK">
- <gene reference="STM0419"/>
- </geneAssociation>
- <geneAssociation id="ga_1651" reaction="R_TMPPP">
- <gene reference="STM4163"/>
- </geneAssociation>
- <geneAssociation id="ga_1652" reaction="R_TPI">
- <gene reference="STM4081"/>
- </geneAssociation>
- <geneAssociation id="ga_1653" reaction="R_TPRDCOAS">
- <gene reference="STM0619"/>
- </geneAssociation>
- <geneAssociation id="ga_1654" reaction="R_TRDR">
- <or>
- <and>
- <gene reference="STM3915"/>
- <gene reference="STM0958"/>
- <gene reference="STM0958"/>
- </and>
- <gene reference="STM2649"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1655" reaction="R_TRE6PH">
- <gene reference="STM4453"/>
- </geneAssociation>
- <geneAssociation id="ga_1656" reaction="R_TRE6PP">
- <gene reference="STM1929"/>
- </geneAssociation>
- <geneAssociation id="ga_1657" reaction="R_TRE6PS">
- <gene reference="STM1928"/>
- </geneAssociation>
- <geneAssociation id="ga_1658" reaction="R_TREH">
- <gene reference="STM3603"/>
- </geneAssociation>
- <geneAssociation id="ga_1659" reaction="R_TREHpp">
- <gene reference="STM1796"/>
- </geneAssociation>
- <geneAssociation id="ga_1660" reaction="R_TREptspp">
- <and>
- <gene reference="STM2433"/>
- <gene reference="STM2431"/>
- <gene reference="STM2432"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1661" reaction="R_TREtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1662" reaction="R_TRPS1">
- <and>
- <gene reference="STM1727"/>
- <gene reference="STM1726"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1663" reaction="R_TRPS2">
- <and>
- <gene reference="STM1727"/>
- <gene reference="STM1726"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1664" reaction="R_TRPS3">
- <and>
- <gene reference="STM1727"/>
- <gene reference="STM1726"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1665" reaction="R_TRPTRS">
- <gene reference="STM3481"/>
- </geneAssociation>
- <geneAssociation id="ga_1666" reaction="R_TRPt2rpp">
- <or>
- <gene reference="STM0150"/>
- <gene reference="STM3279"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1667" reaction="R_TRPtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1668" reaction="R_TRSARr">
- <or>
- <gene reference="STM0519"/>
- <gene reference="STM3248"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1669" reaction="R_TSULabcpp">
- <or>
- <and>
- <gene reference="STM2441"/>
- <gene reference="STM2444"/>
- <gene reference="STM2443"/>
- <gene reference="STM2442"/>
- </and>
- <and>
- <gene reference="STM2441"/>
- <gene reference="STM2443"/>
- <gene reference="STM2442"/>
- <gene reference="STM4063"/>
- </and>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1670" reaction="R_TSULtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1671" reaction="R_TTDCAtexi">
- <gene reference="STM2391"/>
- </geneAssociation>
- <geneAssociation id="ga_1672" reaction="R_TTDCEAtexi">
- <gene reference="STM2391"/>
- </geneAssociation>
- <geneAssociation id="ga_1673" reaction="R_TUNGSabcpp">
- <and>
- <gene reference="STM0781"/>
- <gene reference="STM0782"/>
- <gene reference="STM0783"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1674" reaction="R_TUNGStex">
- <or>
- <gene reference="STM2267"/>
- <gene reference="STM1473"/>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1675" reaction="R_TYMtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1676" reaction="R_TYRPpp">
- <gene reference="STM4249"/>
- </geneAssociation>
- <geneAssociation id="ga_1677" reaction="R_TYRPtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1678" reaction="R_TYRTA">
- <or>
- <gene reference="STM4248"/>
- <gene reference="STM0998"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1679" reaction="R_TYRTRS">
- <gene reference="STM1449"/>
- </geneAssociation>
- <geneAssociation id="ga_1680" reaction="R_TYRt2rpp">
- <or>
- <gene reference="STM1937"/>
- <gene reference="STM0150"/>
- <gene reference="STM0568"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1681" reaction="R_TYRtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1682" reaction="R_U23GAAT">
- <gene reference="STM0226"/>
- </geneAssociation>
- <geneAssociation id="ga_1683" reaction="R_UAAGDS">
- <gene reference="STM0123"/>
- </geneAssociation>
- <geneAssociation id="ga_1684" reaction="R_UACGALPpp">
- <gene reference="STM0494"/>
- </geneAssociation>
- <geneAssociation id="ga_1685" reaction="R_UACGAMPpp">
- <gene reference="STM0494"/>
- </geneAssociation>
- <geneAssociation id="ga_1686" reaction="R_UACGAMtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1687" reaction="R_UACMAMO">
- <gene reference="STM3921"/>
- </geneAssociation>
- <geneAssociation id="ga_1688" reaction="R_UAG2E">
- <gene reference="STM3920"/>
- </geneAssociation>
- <geneAssociation id="ga_1689" reaction="R_UAGAAT">
- <and>
- <gene reference="STM1196"/>
- <gene reference="STM0228"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1690" reaction="R_UAGCVT">
- <gene reference="STM3307"/>
- </geneAssociation>
- <geneAssociation id="ga_1691" reaction="R_UAGDP">
- <gene reference="STM3862"/>
- </geneAssociation>
- <geneAssociation id="ga_1692" reaction="R_UAGPT3">
- <gene reference="STM0128"/>
- </geneAssociation>
- <geneAssociation id="ga_1693" reaction="R_UAMAGS">
- <gene reference="STM0126"/>
- </geneAssociation>
- <geneAssociation id="ga_1694" reaction="R_UAMAS">
- <gene reference="STM0129"/>
- </geneAssociation>
- <geneAssociation id="ga_1695" reaction="R_UAPGR">
- <gene reference="STM4137"/>
- </geneAssociation>
- <geneAssociation id="ga_1696" reaction="R_UDCPDP">
- <or>
- <gene reference="STM1710"/>
- <gene reference="STM0865"/>
- <gene reference="STM3205"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1697" reaction="R_UDCPDPS">
- <gene reference="STM0221"/>
- </geneAssociation>
- <geneAssociation id="ga_1698" reaction="R_UDCPDPpp">
- <or>
- <gene reference="STM0865"/>
- <gene reference="STM1710"/>
- <gene reference="STM3205"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1699" reaction="R_UDPACGALtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1700" reaction="R_UDPG4E">
- <gene reference="STM0776"/>
- </geneAssociation>
- <geneAssociation id="ga_1701" reaction="R_UDPGALPpp">
- <gene reference="STM0494"/>
- </geneAssociation>
- <geneAssociation id="ga_1702" reaction="R_UDPGALtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1703" reaction="R_UDPGD">
- <gene reference="STM2080"/>
- </geneAssociation>
- <geneAssociation id="ga_1704" reaction="R_UDPGDC">
- <gene reference="STM2299"/>
- </geneAssociation>
- <geneAssociation id="ga_1705" reaction="R_UDPGLCURtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1706" reaction="R_UDPGPpp">
- <gene reference="STM0494"/>
- </geneAssociation>
- <geneAssociation id="ga_1707" reaction="R_UDPGtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1708" reaction="R_UDPKAAT">
- <gene reference="STM2297"/>
- </geneAssociation>
- <geneAssociation id="ga_1709" reaction="R_UGLCURPpp">
- <gene reference="STM0494"/>
- </geneAssociation>
- <geneAssociation id="ga_1710" reaction="R_UGLT">
- <gene reference="STM0775"/>
- </geneAssociation>
- <geneAssociation id="ga_1711" reaction="R_UGLYCH">
- <gene reference="STM0515"/>
- </geneAssociation>
- <geneAssociation id="ga_1712" reaction="R_UGMDDS">
- <gene reference="STM0124"/>
- </geneAssociation>
- <geneAssociation id="ga_1713" reaction="R_UHGADA">
- <gene reference="STM0134"/>
- </geneAssociation>
- <geneAssociation id="ga_1714" reaction="R_ULA4NFT">
- <gene reference="STM2299"/>
- </geneAssociation>
- <geneAssociation id="ga_1715" reaction="R_UM3PL">
- <gene reference="STM4416"/>
- </geneAssociation>
- <geneAssociation id="ga_1716" reaction="R_UM4PCP">
- <gene reference="STM1800"/>
- </geneAssociation>
- <geneAssociation id="ga_1717" reaction="R_UM4PL">
- <gene reference="STM4416"/>
- </geneAssociation>
- <geneAssociation id="ga_1718" reaction="R_UMPK">
- <or>
- <gene reference="STM0980"/>
- <gene reference="STM0218"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1719" reaction="R_UMPtex">
- <or>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- <gene reference="STM0320"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1720" reaction="R_UNK3">
- <gene reference="STM4248"/>
- </geneAssociation>
- <geneAssociation id="ga_1721" reaction="R_UPLA4FNT">
- <gene reference="STM2298"/>
- </geneAssociation>
- <geneAssociation id="ga_1722" reaction="R_UPP3MT">
- <or>
- <gene reference="STM3936"/>
- <gene reference="STM3477"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1723" reaction="R_UPP3S">
- <gene reference="STM3937"/>
- </geneAssociation>
- <geneAssociation id="ga_1724" reaction="R_UPPRT">
- <gene reference="STM2498"/>
- </geneAssociation>
- <geneAssociation id="ga_1725" reaction="R_URAt2pp">
- <gene reference="STM2497"/>
- </geneAssociation>
- <geneAssociation id="ga_1726" reaction="R_URAtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1727" reaction="R_URDGLYCD">
- <gene reference="STM0528"/>
- </geneAssociation>
- <geneAssociation id="ga_1728" reaction="R_UREAtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1729" reaction="R_UREAtpp">
- <gene reference="STM4087"/>
- </geneAssociation>
- <geneAssociation id="ga_1730" reaction="R_URIDK2r">
- <gene reference="STM0218"/>
- </geneAssociation>
- <geneAssociation id="ga_1731" reaction="R_URIH">
- <or>
- <gene reference="STM0661"/>
- <gene reference="STM0051"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1732" reaction="R_URIK2">
- <gene reference="STM2122"/>
- </geneAssociation>
- <geneAssociation id="ga_1733" reaction="R_URIt2pp">
- <or>
- <gene reference="STM3113"/>
- <gene reference="STM2409"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1734" reaction="R_URIt2rpp">
- <gene reference="STM2421"/>
- </geneAssociation>
- <geneAssociation id="ga_1735" reaction="R_URItex">
- <gene reference="STM0413"/>
- </geneAssociation>
- <geneAssociation id="ga_1736" reaction="R_USHD">
- <gene reference="STM0535"/>
- </geneAssociation>
- <geneAssociation id="ga_1737" reaction="R_VALTA">
- <gene reference="STM3903"/>
- </geneAssociation>
- <geneAssociation id="ga_1738" reaction="R_VALTRS">
- <gene reference="STM4475"/>
- </geneAssociation>
- <geneAssociation id="ga_1739" reaction="R_VALabcpp">
- <and>
- <gene reference="STM3560"/>
- <gene reference="STM3561"/>
- <gene reference="STM3563"/>
- <gene reference="STM3567"/>
- <gene reference="STM3562"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1740" reaction="R_VALt2rpp">
- <gene reference="STM0399"/>
- </geneAssociation>
- <geneAssociation id="ga_1741" reaction="R_VALtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1742" reaction="R_VPAMT">
- <gene reference="STM3665"/>
- </geneAssociation>
- <geneAssociation id="ga_1743" reaction="R_X5PL3E">
- <gene reference="STM4387"/>
- </geneAssociation>
- <geneAssociation id="ga_1744" reaction="R_XANt2pp">
- <gene reference="STM3747"/>
- </geneAssociation>
- <geneAssociation id="ga_1745" reaction="R_XANtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1746" reaction="R_XMPtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1747" reaction="R_XPPT">
- <gene reference="STM0317"/>
- </geneAssociation>
- <geneAssociation id="ga_1748" reaction="R_XTSNH">
- <gene reference="STM0051"/>
- </geneAssociation>
- <geneAssociation id="ga_1749" reaction="R_XTSNt2rpp">
- <gene reference="STM2421"/>
- </geneAssociation>
- <geneAssociation id="ga_1750" reaction="R_XTSNtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1751" reaction="R_XYLI1">
- <gene reference="STM3661"/>
- </geneAssociation>
- <geneAssociation id="ga_1752" reaction="R_XYLI2">
- <gene reference="STM3661"/>
- </geneAssociation>
- <geneAssociation id="ga_1753" reaction="R_XYLK">
- <or>
- <gene reference="STM3660"/>
- <gene reference="STM0103"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1754" reaction="R_XYLK2">
- <or>
- <gene reference="STM0103"/>
- <gene reference="STM3674"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1755" reaction="R_XYLUt2pp">
- <and>
- <gene reference="STM3671"/>
- <gene reference="STM3672"/>
- <gene reference="STM3673"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1756" reaction="R_XYLUtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1757" reaction="R_XYLtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1758" reaction="R_XYLt2pp">
- <gene reference="STM0042"/>
- </geneAssociation>
- <geneAssociation id="ga_1759" reaction="R_ZN2abcpp">
- <gene reference="STM3576"/>
- </geneAssociation>
- <geneAssociation id="ga_1760" reaction="R_ZN2t3pp">
- <or>
- <gene reference="STM0758"/>
- <gene reference="STM4061"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1761" reaction="R_ZN2tpp">
- <gene reference="STM3190"/>
- </geneAssociation>
- <geneAssociation id="ga_1762" reaction="R_ZNabcpp">
- <and>
- <gene reference="STM1891"/>
- <gene reference="STM1893"/>
- <gene reference="STM1892.S"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1763" reaction="R_Zn2tex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1764" reaction="R_THZPSN">
- <and>
- <gene reference="STM2543"/>
- <gene reference="STM4162"/>
- <gene reference="STM4159"/>
- <gene reference="STM4160"/>
- <gene reference="STM0425"/>
- <gene reference="STM4161"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1765" reaction="R_AEPtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1766" reaction="R_AEPabcpp">
- <and>
- <gene reference="STM0426"/>
- <gene reference="STM0427"/>
- <gene reference="STM0429"/>
- <gene reference="STM0428"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1767" reaction="R_AEPPYRTA">
- <gene reference="STM0431"/>
- </geneAssociation>
- <geneAssociation id="ga_1768" reaction="R_PALDH">
- <gene reference="STM0432"/>
- </geneAssociation>
- <geneAssociation id="ga_1769" reaction="R_4hoxpactex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1770" reaction="R_4HOXPACt2pp">
- <gene reference="STM1107"/>
- </geneAssociation>
- <geneAssociation id="ga_1771" reaction="R_FLAVNADR">
- <gene reference="STM1098"/>
- </geneAssociation>
- <geneAssociation id="ga_1772" reaction="R_4HOXPACMON">
- <or>
- <gene reference="STM1098"/>
- <gene reference="STM1099"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1773" reaction="R_4HOXPACMOF">
- <gene reference="STM1099"/>
- </geneAssociation>
- <geneAssociation id="ga_1774" reaction="R_34DHPACDO">
- <gene reference="STM1103"/>
- </geneAssociation>
- <geneAssociation id="ga_1775" reaction="R_4C2HM6SADH">
- <gene reference="STM1102"/>
- </geneAssociation>
- <geneAssociation id="ga_1776" reaction="R_5CM2HMUDI">
- <gene reference="STM1104"/>
- </geneAssociation>
- <geneAssociation id="ga_1777" reaction="R_5C2O3EDDC">
- <gene reference="STM1101"/>
- </geneAssociation>
- <geneAssociation id="ga_1778" reaction="R_2HH24DDH">
- <gene reference="STM1105"/>
- </geneAssociation>
- <geneAssociation id="ga_1779" reaction="R_4H2KPILY">
- <gene reference="STM1106"/>
- </geneAssociation>
- <geneAssociation id="ga_1780" reaction="R_12PPDS2tpp">
- <gene reference="STM2037"/>
- </geneAssociation>
- <geneAssociation id="ga_1781" reaction="R_12PPDRDH">
- <and>
- <gene reference="STM2040"/>
- <gene reference="STM2041"/>
- <gene reference="STM2042"/>
- <gene reference="STM2043"/>
- <gene reference="STM2044"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1782" reaction="R_12PPDSDH">
- <and>
- <gene reference="STM2040"/>
- <gene reference="STM2041"/>
- <gene reference="STM2042"/>
- <gene reference="STM2043"/>
- <gene reference="STM2044"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1783" reaction="R_ALCDPPAL">
- <gene reference="STM2052"/>
- </geneAssociation>
- <geneAssociation id="ga_1784" reaction="R_COAPPALDH">
- <gene reference="STM2051"/>
- </geneAssociation>
- <geneAssociation id="ga_1785" reaction="R_DSCLCOCH">
- <or>
- <gene reference="STM2025"/>
- <gene reference="STM3477"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1786" reaction="R_Cobalt2abcppI">
- <and>
- <gene reference="STM2023"/>
- <gene reference="STM2022"/>
- <gene reference="STM2021"/>
- <gene reference="STM2020"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1787" reaction="R_Cobalt2abcppII">
- <and>
- <gene reference="STM2023"/>
- <gene reference="STM2022"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1788" reaction="R_CODSCL2MT">
- <gene reference="STM2024"/>
- </geneAssociation>
- <geneAssociation id="ga_1789" reaction="R_CODSCL3MT">
- <gene reference="STM2027"/>
- </geneAssociation>
- <geneAssociation id="ga_1790" reaction="R_CODSCL4MT">
- <gene reference="STM2029"/>
- </geneAssociation>
- <geneAssociation id="ga_1791" reaction="R_CODSCL5DA">
- <gene reference="STM2028"/>
- </geneAssociation>
- <geneAssociation id="ga_1792" reaction="R_CODSCL5BMT">
- <gene reference="STM2032"/>
- </geneAssociation>
- <geneAssociation id="ga_1793" reaction="R_CODSCL6ARED">
- <gene reference="STM2026"/>
- </geneAssociation>
- <geneAssociation id="ga_1794" reaction="R_CODSCL6BMT">
- <gene reference="STM2031"/>
- </geneAssociation>
- <geneAssociation id="ga_1795" reaction="R_CODSCL7MTDC">
- <gene reference="STM2030"/>
- </geneAssociation>
- <geneAssociation id="ga_1796" reaction="R_CODSCL8XI">
- <gene reference="STM2033"/>
- </geneAssociation>
- <geneAssociation id="ga_1797" reaction="R_COBNAD">
- <gene reference="STM2035"/>
- </geneAssociation>
- <geneAssociation id="ga_1798" reaction="R_COB2NDARED">
- <gene reference="s0001"/>
- </geneAssociation>
- <geneAssociation id="ga_1799" reaction="R_COB1NDAAT1">
- <or>
- <gene reference="STM2050"/>
- <gene reference="STM1718"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1800" reaction="R_COB1NDAAT2">
- <gene reference="STM2467"/>
- </geneAssociation>
- <geneAssociation id="ga_1801" reaction="R_ADCOBNSYN">
- <gene reference="STM2019"/>
- </geneAssociation>
- <geneAssociation id="ga_1802" reaction="R_LTHRK">
- <gene reference="STM2058"/>
- </geneAssociation>
- <geneAssociation id="ga_1803" reaction="R_THRPDC">
- <gene reference="STM0644"/>
- </geneAssociation>
- <geneAssociation id="ga_1804" reaction="R_ADOCBIPS">
- <gene reference="STM2034"/>
- </geneAssociation>
- <geneAssociation id="ga_1805" reaction="R_ADOCBLPS">
- <gene reference="STM2017"/>
- </geneAssociation>
- <geneAssociation id="ga_1806" reaction="R_ADOCBLPP">
- <gene reference="STM0643"/>
- </geneAssociation>
- <geneAssociation id="ga_1807" reaction="R_ADOCBIK">
- <or>
- <gene reference="STM2018"/>
- <gene reference="STM1208"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1808" reaction="R_CBLAT">
- <or>
- <gene reference="STM1718"/>
- <gene reference="STM2050"/>
- <gene reference="STM2467"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1809" reaction="R_REMNANT1tex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1810" reaction="R_udcdp20OagLpp">
- <gene reference="STM3713"/>
- </geneAssociation>
- <geneAssociation id="ga_1811" reaction="R_udcdpgalrmnmanabetpp">
- <gene reference="STM2088"/>
- </geneAssociation>
- <geneAssociation id="ga_1812" reaction="R_OGLT">
- <gene reference="STM2082"/>
- </geneAssociation>
- <geneAssociation id="ga_1813" reaction="R_ORLT">
- <gene reference="STM2085"/>
- </geneAssociation>
- <geneAssociation id="ga_1814" reaction="R_OMLT">
- <gene reference="STM2086"/>
- </geneAssociation>
- <geneAssociation id="ga_1815" reaction="R_OALT">
- <gene reference="STM2087"/>
- </geneAssociation>
- <geneAssociation id="ga_1816" reaction="R_MAN1PT2">
- <or>
- <gene reference="STM2105.S"/>
- <gene reference="STM2084"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1817" reaction="R_PMANM">
- <or>
- <gene reference="STM2104"/>
- <gene reference="STM2083"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1818" reaction="R_OAP1pp">
- <gene reference="STM1332"/>
- </geneAssociation>
- <geneAssociation id="ga_1819" reaction="R_OAP2pp">
- <gene reference="STM1332"/>
- </geneAssociation>
- <geneAssociation id="ga_1820" reaction="R_OAP3pp">
- <gene reference="STM1332"/>
- </geneAssociation>
- <geneAssociation id="ga_1821" reaction="R_OAP4pp">
- <gene reference="STM1332"/>
- </geneAssociation>
- <geneAssociation id="ga_1822" reaction="R_OAP5pp">
- <gene reference="STM1332"/>
- </geneAssociation>
- <geneAssociation id="ga_1823" reaction="R_OAP6pp">
- <gene reference="STM1332"/>
- </geneAssociation>
- <geneAssociation id="ga_1824" reaction="R_OAP7pp">
- <gene reference="STM1332"/>
- </geneAssociation>
- <geneAssociation id="ga_1825" reaction="R_OAP8pp">
- <gene reference="STM1332"/>
- </geneAssociation>
- <geneAssociation id="ga_1826" reaction="R_OAP9pp">
- <gene reference="STM1332"/>
- </geneAssociation>
- <geneAssociation id="ga_1827" reaction="R_OAP10pp">
- <gene reference="STM1332"/>
- </geneAssociation>
- <geneAssociation id="ga_1828" reaction="R_OAP11pp">
- <gene reference="STM1332"/>
- </geneAssociation>
- <geneAssociation id="ga_1829" reaction="R_OAP12pp">
- <gene reference="STM1332"/>
- </geneAssociation>
- <geneAssociation id="ga_1830" reaction="R_OAP13pp">
- <gene reference="STM1332"/>
- </geneAssociation>
- <geneAssociation id="ga_1831" reaction="R_OAP14pp">
- <gene reference="STM1332"/>
- </geneAssociation>
- <geneAssociation id="ga_1832" reaction="R_OAP15pp">
- <gene reference="STM1332"/>
- </geneAssociation>
- <geneAssociation id="ga_1833" reaction="R_OAP16pp">
- <gene reference="STM1332"/>
- </geneAssociation>
- <geneAssociation id="ga_1834" reaction="R_OAP17pp">
- <gene reference="STM1332"/>
- </geneAssociation>
- <geneAssociation id="ga_1835" reaction="R_OAP18pp">
- <gene reference="STM1332"/>
- </geneAssociation>
- <geneAssociation id="ga_1836" reaction="R_OAP19pp">
- <gene reference="STM1332"/>
- </geneAssociation>
- <geneAssociation id="ga_1837" reaction="R_G1PCT">
- <gene reference="STM2092"/>
- </geneAssociation>
- <geneAssociation id="ga_1838" reaction="R_CDPGLC46DH">
- <gene reference="STM2091"/>
- </geneAssociation>
- <geneAssociation id="ga_1839" reaction="R_CDP4D6DGLCRx">
- <and>
- <gene reference="STM2090"/>
- <gene reference="STM2093"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1840" reaction="R_CDPABEQS">
- <gene reference="STM2089"/>
- </geneAssociation>
- <geneAssociation id="ga_1841" reaction="R_SALCHS4FEexs">
- <gene reference="s0001"/>
- </geneAssociation>
- <geneAssociation id="ga_1842" reaction="R_SALCHS4FEabcpp">
- <and>
- <gene reference="STM0594"/>
- <gene reference="STM0590"/>
- <gene reference="STM0592"/>
- <gene reference="STM0591"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1843" reaction="R_SALCHS4abcpp">
- <gene reference="STM2774"/>
- </geneAssociation>
- <geneAssociation id="ga_1844" reaction="R_FEENTER2tpp">
- <gene reference="STM2774"/>
- </geneAssociation>
- <geneAssociation id="ga_1845" reaction="R_SALCHSXtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1846" reaction="R_CSNt2pp">
- <gene reference="STM3333"/>
- </geneAssociation>
- <geneAssociation id="ga_1847" reaction="R_CSND">
- <gene reference="STM3334"/>
- </geneAssociation>
- <geneAssociation id="ga_1848" reaction="R_ALCD19">
- <gene reference="STM1627"/>
- </geneAssociation>
- <geneAssociation id="ga_1849" reaction="R_ALCD2x">
- <or>
- <gene reference="STM1627"/>
- <gene reference="STM1567"/>
- <gene reference="STM1749"/>
- <gene reference="STM2461"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1850" reaction="R_FALDH2">
- <gene reference="STM1627"/>
- </geneAssociation>
- <geneAssociation id="ga_1851" reaction="R_DPR">
- <or>
- <gene reference="STM3909"/>
- <gene reference="STM0434"/>
- <gene reference="STM2573"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1852" reaction="R_LIPAHT2ex">
- <gene reference="STM0628"/>
- </geneAssociation>
- <geneAssociation id="ga_1853" reaction="R_LIPAHTex">
- <gene reference="STM0628"/>
- </geneAssociation>
- <geneAssociation id="ga_1854" reaction="R_CYTBD2pp">
- <and>
- <gene reference="STM1792"/>
- <gene reference="STM1793"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1855" reaction="R_CYTBDpp">
- <or>
- <and>
- <gene reference="STM1792"/>
- <gene reference="STM1793"/>
- </and>
- <and>
- <gene reference="STM0740"/>
- <gene reference="STM0741"/>
- </and>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1856" reaction="R_ACANTHAT">
- <gene reference="STM1582"/>
- </geneAssociation>
- <geneAssociation id="ga_1857" reaction="R_GLTPD">
- <gene reference="STM3261"/>
- </geneAssociation>
- <geneAssociation id="ga_1858" reaction="R_TGBPA">
- <and>
- <gene reference="STM3257"/>
- <gene reference="STM3253"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1859" reaction="R_GUI1">
- <gene reference="STM3137"/>
- </geneAssociation>
- <geneAssociation id="ga_1860" reaction="R_GUI2">
- <gene reference="STM3137"/>
- </geneAssociation>
- <geneAssociation id="ga_1861" reaction="R_MNNH">
- <gene reference="STM3135"/>
- </geneAssociation>
- <geneAssociation id="ga_1862" reaction="R_MANAO">
- <gene reference="STM3136"/>
- </geneAssociation>
- <geneAssociation id="ga_1863" reaction="R_OAADCS">
- <or>
- <and>
- <gene reference="STM0054"/>
- <gene reference="STM0055"/>
- <gene reference="STM0056"/>
- </and>
- <and>
- <gene reference="STM3351"/>
- <gene reference="STM3352"/>
- <gene reference="STM3353"/>
- </and>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1864" reaction="R_CITt4pp">
- <gene reference="STM0057"/>
- </geneAssociation>
- <geneAssociation id="ga_1865" reaction="R_DDGLCNt2rpp">
- <gene reference="STM0161"/>
- </geneAssociation>
- <geneAssociation id="ga_1866" reaction="R_CITt2pp">
- <gene reference="STM0689"/>
- </geneAssociation>
- <geneAssociation id="ga_1867" reaction="R_CITtupp">
- <and>
- <gene reference="STM2786"/>
- <gene reference="STM2787"/>
- <gene reference="STM2788"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1868" reaction="R_ICITtupp">
- <and>
- <gene reference="STM2786"/>
- <gene reference="STM2787"/>
- <gene reference="STM2788"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1869" reaction="R_ACONCtupp">
- <and>
- <gene reference="STM2786"/>
- <gene reference="STM2787"/>
- <gene reference="STM2788"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1870" reaction="R_NI2uabcpp">
- <or>
- <gene reference="STM4456"/>
- <and>
- <gene reference="STM1255"/>
- <gene reference="STM1256"/>
- <gene reference="STM1257"/>
- <gene reference="STM1258"/>
- <gene reference="STM1259"/>
- </and>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1871" reaction="R_GALTptspp">
- <and>
- <gene reference="STM3258"/>
- <gene reference="STM3259"/>
- <gene reference="STM3260"/>
- <gene reference="STM2431"/>
- <gene reference="STM2432"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1872" reaction="R_TAGtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1873" reaction="R_TAGptspp">
- <and>
- <gene reference="STM3255"/>
- <gene reference="STM3256"/>
- <gene reference="STM2432"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1874" reaction="R_TAG1PK">
- <or>
- <gene reference="STM1326"/>
- <gene reference="STM3254"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1875" reaction="R_FE2abcpp">
- <or>
- <gene reference="STM3506"/>
- <and>
- <gene reference="STM2861"/>
- <gene reference="STM2862"/>
- <gene reference="STM2863"/>
- <gene reference="STM2864"/>
- </and>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1876" reaction="R_MN2abcpp">
- <and>
- <gene reference="STM2861"/>
- <gene reference="STM2862"/>
- <gene reference="STM2863"/>
- <gene reference="STM2864"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1877" reaction="R_TETDHpp1">
- <and>
- <gene reference="STM1383"/>
- <gene reference="STM1385"/>
- <gene reference="STM1384"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1878" reaction="R_TSULDHpp1">
- <and>
- <gene reference="STM2065"/>
- <gene reference="STM2064"/>
- <gene reference="STM2063"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1879" reaction="R_TETDHpp2">
- <and>
- <gene reference="STM1383"/>
- <gene reference="STM1385"/>
- <gene reference="STM1384"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1880" reaction="R_TSULDHpp2">
- <and>
- <gene reference="STM2065"/>
- <gene reference="STM2064"/>
- <gene reference="STM2063"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1881" reaction="R_TETDHpp3">
- <and>
- <gene reference="STM1383"/>
- <gene reference="STM1385"/>
- <gene reference="STM1384"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1882" reaction="R_TSULDHpp3">
- <and>
- <gene reference="STM2065"/>
- <gene reference="STM2064"/>
- <gene reference="STM2063"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1883" reaction="R_SO3R">
- <and>
- <gene reference="STM2548"/>
- <gene reference="STM2549"/>
- <gene reference="STM2550"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1884" reaction="R_MG2uabcpp">
- <or>
- <gene reference="STM4456"/>
- <gene reference="STM3763"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1885" reaction="R_UPPDC1">
- <gene reference="STM4167"/>
- </geneAssociation>
- <geneAssociation id="ga_1886" reaction="R_AIRSK">
- <gene reference="STM4066"/>
- </geneAssociation>
- <geneAssociation id="ga_1887" reaction="R_AIRStex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1888" reaction="R_ARGDA">
- <gene reference="STM4467"/>
- </geneAssociation>
- <geneAssociation id="ga_1889" reaction="R_OCBT">
- <or>
- <gene reference="STM4469"/>
- <gene reference="STM4465"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1890" reaction="R_CBMKr">
- <or>
- <gene reference="STM0532"/>
- <gene reference="STM4466"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1891" reaction="R_3PGt6pp">
- <gene reference="STM2399"/>
- </geneAssociation>
- <geneAssociation id="ga_1892" reaction="R_2PGt6pp">
- <gene reference="STM2399"/>
- </geneAssociation>
- <geneAssociation id="ga_1893" reaction="R_PEPt6pp">
- <gene reference="STM2399"/>
- </geneAssociation>
- <geneAssociation id="ga_1894" reaction="R_PEPtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1895" reaction="R_2PGtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1896" reaction="R_3PGtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1897" reaction="R_SERD_L">
- <or>
- <gene reference="STM3240"/>
- <gene reference="STM1826"/>
- <gene reference="STM2971"/>
- <gene reference="STM2196"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1898" reaction="R_TARTD">
- <and>
- <gene reference="STM3355"/>
- <gene reference="STM3354"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1899" reaction="R_NI2tpp">
- <or>
- <gene reference="STM3952"/>
- <gene reference="STM2783"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1900" reaction="R_CAT">
- <or>
- <gene reference="STM1318"/>
- <gene reference="STM4106"/>
- <gene reference="STM1731"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1901" reaction="R_CHORM">
- <or>
- <gene reference="STM2667"/>
- <gene reference="STM2669"/>
- <gene reference="STM1269"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1902" reaction="R_DAPAL">
- <gene reference="STM1002"/>
- </geneAssociation>
- <geneAssociation id="ga_1903" reaction="R_UDPGALM">
- <gene reference="STM0719"/>
- </geneAssociation>
- <geneAssociation id="ga_1904" reaction="R_HYD1pp">
- <or>
- <and>
- <gene reference="STM1786"/>
- <gene reference="STM1787"/>
- <gene reference="STM1788"/>
- </and>
- <and>
- <gene reference="STM3147"/>
- <gene reference="STM3150"/>
- </and>
- <and>
- <gene reference="STM2847"/>
- <gene reference="STM2848"/>
- <gene reference="STM2849"/>
- <gene reference="STM2850"/>
- <gene reference="STM2851"/>
- <gene reference="STM2852"/>
- </and>
- <and>
- <gene reference="STM1538"/>
- <gene reference="STM1539"/>
- </and>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1905" reaction="R_HYD2pp">
- <or>
- <and>
- <gene reference="STM1786"/>
- <gene reference="STM1787"/>
- <gene reference="STM1788"/>
- </and>
- <and>
- <gene reference="STM3147"/>
- <gene reference="STM3150"/>
- </and>
- <and>
- <gene reference="STM1538"/>
- <gene reference="STM1539"/>
- </and>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1906" reaction="R_HYD3pp">
- <or>
- <and>
- <gene reference="STM1786"/>
- <gene reference="STM1787"/>
- <gene reference="STM1788"/>
- </and>
- <and>
- <gene reference="STM3147"/>
- <gene reference="STM3150"/>
- </and>
- <and>
- <gene reference="STM1538"/>
- <gene reference="STM1539"/>
- </and>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1907" reaction="R_TETtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1908" reaction="R_FOAMtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1909" reaction="R_TARTRDtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1910" reaction="R_TARTRDtpp">
- <gene reference="STM3356"/>
- </geneAssociation>
- <geneAssociation id="ga_1911" reaction="R_GALCTD">
- <or>
- <gene reference="STM3250"/>
- <gene reference="STM3697"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1912" reaction="R_SHSL1">
- <or>
- <gene reference="STM4100"/>
- <gene reference="STM3624A"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1913" reaction="R_ASPt2_3pp">
- <or>
- <gene reference="STM4325"/>
- <gene reference="STM4301"/>
- <gene reference="STM3599"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1914" reaction="R_SUCFUMtpp">
- <or>
- <gene reference="STM4301"/>
- <gene reference="STM0627"/>
- <gene reference="STM4325"/>
- <gene reference="STM3599"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1915" reaction="R_SUCCt2_3pp">
- <or>
- <gene reference="STM4301"/>
- <gene reference="STM4325"/>
- <gene reference="STM3599"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1916" reaction="R_FUMt2_3pp">
- <or>
- <gene reference="STM4325"/>
- <gene reference="STM4301"/>
- <gene reference="STM0627"/>
- <gene reference="STM3599"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1917" reaction="R_MALt2_3pp">
- <or>
- <gene reference="STM4301"/>
- <gene reference="STM4325"/>
- <gene reference="STM3599"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1918" reaction="R_ALAALAD">
- <gene reference="STM1599"/>
- </geneAssociation>
- <geneAssociation id="ga_1919" reaction="R_DMSOR1">
- <or>
- <and>
- <gene reference="STM1499"/>
- <gene reference="STM1498"/>
- <gene reference="STM1497"/>
- <gene reference="STM1496"/>
- </and>
- <and>
- <gene reference="STM0964"/>
- <gene reference="STM0965"/>
- <gene reference="STM0966"/>
- </and>
- <and>
- <gene reference="STM4305.S"/>
- <gene reference="STM4306"/>
- <gene reference="STM4307"/>
- </and>
- <and>
- <gene reference="STM2528"/>
- <gene reference="STM2530"/>
- <gene reference="STM2529"/>
- </and>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1920" reaction="R_DMSOR2">
- <or>
- <and>
- <gene reference="STM0964"/>
- <gene reference="STM0965"/>
- <gene reference="STM0966"/>
- </and>
- <and>
- <gene reference="STM4305.S"/>
- <gene reference="STM4306"/>
- <gene reference="STM4307"/>
- </and>
- <and>
- <gene reference="STM2528"/>
- <gene reference="STM2530"/>
- <gene reference="STM2529"/>
- </and>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1921" reaction="R_NAt3pp">
- <or>
- <gene reference="STM0866"/>
- <gene reference="STM1771"/>
- <gene reference="STM1556"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1922" reaction="R_4IZ5PPH">
- <gene reference="STM0787"/>
- </geneAssociation>
- <geneAssociation id="ga_1923" reaction="R_NFLGLNH">
- <gene reference="STM0788"/>
- </geneAssociation>
- <geneAssociation id="ga_1924" reaction="R_FEROXBFEabcpp">
- <and>
- <gene reference="STM0194"/>
- <gene reference="STM0192"/>
- <gene reference="STM0193"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1925" reaction="R_FEROXEFEabcpp">
- <and>
- <gene reference="STM0194"/>
- <gene reference="STM0192"/>
- <gene reference="STM0193"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1926" reaction="R_FEROXGFEabcpp">
- <and>
- <gene reference="STM0194"/>
- <gene reference="STM0192"/>
- <gene reference="STM0193"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1927" reaction="R_FEROXGFEtonex">
- <and>
- <gene reference="STM0364"/>
- <gene reference="STM1737"/>
- <gene reference="STM3158"/>
- <gene reference="STM3159"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1928" reaction="R_FEROXBFEtex">
- <gene reference="STM0364"/>
- </geneAssociation>
- <geneAssociation id="ga_1929" reaction="R_FEROXEFEtex">
- <gene reference="STM0364"/>
- </geneAssociation>
- <geneAssociation id="ga_1930" reaction="R_FEROXGtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1931" reaction="R_FEROXEtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1932" reaction="R_FEROXBtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1933" reaction="R_DRIBtpp">
- <gene reference="STM3792"/>
- </geneAssociation>
- <geneAssociation id="ga_1934" reaction="R_DRBK">
- <gene reference="STM3793"/>
- </geneAssociation>
- <geneAssociation id="ga_1935" reaction="R_DRIBtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1936" reaction="R_SLCYSS">
- <gene reference="STM2440"/>
- </geneAssociation>
- <geneAssociation id="ga_1937" reaction="R_GSHPO">
- <gene reference="STM1341"/>
- </geneAssociation>
- <geneAssociation id="ga_1938" reaction="R_HHDDI">
- <gene reference="STM1101"/>
- </geneAssociation>
- <geneAssociation id="ga_1939" reaction="R_INOSR">
- <or>
- <gene reference="STM4433"/>
- <gene reference="STM4425"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1940" reaction="R_MMSAD3">
- <gene reference="STM4421"/>
- </geneAssociation>
- <geneAssociation id="ga_1941" reaction="R_CHITPH">
- <gene reference="STM1316"/>
- </geneAssociation>
- <geneAssociation id="ga_1942" reaction="R_D5KGK">
- <gene reference="STM4420"/>
- </geneAssociation>
- <geneAssociation id="ga_1943" reaction="R_DHEDAA">
- <and>
- <gene reference="STM1106"/>
- <gene reference="STM2289"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1944" reaction="R_2INSD">
- <gene reference="STM4424.S"/>
- </geneAssociation>
- <geneAssociation id="ga_1945" reaction="R_DTARTD">
- <gene reference="STM2949"/>
- </geneAssociation>
- <geneAssociation id="ga_1946" reaction="R_NMNR">
- <gene reference="STM2949"/>
- </geneAssociation>
- <geneAssociation id="ga_1947" reaction="R_RNMK">
- <gene reference="STM4580.S"/>
- </geneAssociation>
- <geneAssociation id="ga_1948" reaction="R_OACT">
- <gene reference="STM2232"/>
- </geneAssociation>
- <geneAssociation id="ga_1949" reaction="R_UDCPAT">
- <gene reference="STM2087"/>
- </geneAssociation>
- <geneAssociation id="ga_1950" reaction="R_UDCPMT">
- <gene reference="STM2086"/>
- </geneAssociation>
- <geneAssociation id="ga_1951" reaction="R_UDCPRT">
- <gene reference="STM2085"/>
- </geneAssociation>
- <geneAssociation id="ga_1952" reaction="R_UDCPGT">
- <gene reference="STM2082"/>
- </geneAssociation>
- <geneAssociation id="ga_1953" reaction="R_TCBO">
- <and>
- <gene reference="STM0690"/>
- <gene reference="STM0691"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1954" reaction="R_GLYBt6pp">
- <gene reference="STM4290"/>
- </geneAssociation>
- <geneAssociation id="ga_1955" reaction="R_CHITOBpts">
- <and>
- <gene reference="STM1314"/>
- <gene reference="STM1312"/>
- <gene reference="STM1313"/>
- <gene reference="STM2431"/>
- <gene reference="STM2432"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1956" reaction="R_RNAMtpp">
- <gene reference="STM0757"/>
- </geneAssociation>
- <geneAssociation id="ga_1957" reaction="R_OAO5t3pp">
- <gene reference="STM3926"/>
- </geneAssociation>
- <geneAssociation id="ga_1958" reaction="R_TCBt2pp">
- <gene reference="STM0689"/>
- </geneAssociation>
- <geneAssociation id="ga_1959" reaction="R_TTONR1pp">
- <and>
- <gene reference="STM1383"/>
- <gene reference="STM1384"/>
- <gene reference="STM1385"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1960" reaction="R_TTONR2pp">
- <and>
- <gene reference="STM1383"/>
- <gene reference="STM1384"/>
- <gene reference="STM1385"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1961" reaction="R_LEUt4rpp">
- <gene reference="STM0399"/>
- </geneAssociation>
- <geneAssociation id="ga_1962" reaction="R_UPLA4NT">
- <gene reference="STM2298"/>
- </geneAssociation>
- <geneAssociation id="ga_1963" reaction="R_PSUDS">
- <gene reference="STM2662"/>
- </geneAssociation>
- <geneAssociation id="ga_1964" reaction="R_PFOR">
- <or>
- <and>
- <gene reference="STM0694"/>
- <gene reference="STM1651"/>
- </and>
- <and>
- <gene reference="STM3045"/>
- <gene reference="STM1651"/>
- </and>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1965" reaction="R_NNDMBRT">
- <or>
- <gene reference="STM2016"/>
- <gene reference="STM1221"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1966" reaction="R_OAL_ST">
- <gene reference="STM3713"/>
- </geneAssociation>
- <geneAssociation id="ga_1967" reaction="R_OA4L_ST">
- <and>
- <gene reference="STM1332"/>
- <gene reference="STM2079"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1968" reaction="R_OA5L_ST">
- <and>
- <gene reference="STM1332"/>
- <gene reference="STM2079"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1969" reaction="R_OA4VL_ST">
- <and>
- <gene reference="STM1332"/>
- <gene reference="STM0589"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1970" reaction="R_OA5VL_ST">
- <and>
- <gene reference="STM1332"/>
- <gene reference="STM0589"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1971" reaction="R_OAO4t3pp">
- <gene reference="STM3926"/>
- </geneAssociation>
- <geneAssociation id="ga_1972" reaction="R_4HTHRtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1973" reaction="R_4HTHRtrpp">
- <gene reference="STM3243"/>
- </geneAssociation>
- <geneAssociation id="ga_1974" reaction="R_4HTHRK">
- <gene reference="STM0003"/>
- </geneAssociation>
- <geneAssociation id="ga_1975" reaction="R_AADDFT">
- <gene reference="STM3927"/>
- </geneAssociation>
- <geneAssociation id="ga_1976" reaction="R_ENTERHpp">
- <gene reference="STM2776"/>
- </geneAssociation>
- <geneAssociation id="ga_1977" reaction="R_SALCHS4Hpp">
- <gene reference="STM2776"/>
- </geneAssociation>
- <geneAssociation id="ga_1978" reaction="R_SALCHS4FEHpp">
- <gene reference="STM2776"/>
- </geneAssociation>
- <geneAssociation id="ga_1979" reaction="R_DHBSZ3FEexs">
- <gene reference="s0001"/>
- </geneAssociation>
- <geneAssociation id="ga_1980" reaction="R_DHBSZ3FEtonex">
- <and>
- <or>
- <gene reference="STM2199"/>
- <gene reference="STM0585"/>
- <gene reference="STM2777"/>
- </or>
- <gene reference="STM1737"/>
- <gene reference="STM3159"/>
- <gene reference="STM3158"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1981" reaction="R_FEDHBZS3R1">
- <or>
- <gene reference="STM2775"/>
- <gene reference="STM0586"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1982" reaction="R_FEDHBZS3R2">
- <or>
- <gene reference="STM2775"/>
- <gene reference="STM0586"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1983" reaction="R_FEDHBZS3R3">
- <or>
- <gene reference="STM2775"/>
- <gene reference="STM0586"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1984" reaction="R_SALCHS2FEexs">
- <gene reference="s0001"/>
- </geneAssociation>
- <geneAssociation id="ga_1985" reaction="R_SALCHS2FEtonex">
- <gene reference="STM2777"/>
- </geneAssociation>
- <geneAssociation id="ga_1986" reaction="R_SALCHS2FEabcpp">
- <and>
- <gene reference="STM0594"/>
- <gene reference="STM0590"/>
- <gene reference="STM0592"/>
- <gene reference="STM0591"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_1987" reaction="R_SALCHS2FER1">
- <gene reference="STM2775"/>
- </geneAssociation>
- <geneAssociation id="ga_1988" reaction="R_SALCHS2FER2">
- <gene reference="STM2775"/>
- </geneAssociation>
- <geneAssociation id="ga_1989" reaction="R_SALCHS2FER3">
- <gene reference="STM2775"/>
- </geneAssociation>
- <geneAssociation id="ga_1990" reaction="R_SALCHS2H">
- <gene reference="STM2775"/>
- </geneAssociation>
- <geneAssociation id="ga_1991" reaction="R_SALCHS1H">
- <gene reference="STM2775"/>
- </geneAssociation>
- <geneAssociation id="ga_1992" reaction="R_ENTERH">
- <or>
- <gene reference="STM2775"/>
- <gene reference="STM0586"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1993" reaction="R_DHBZS3H">
- <or>
- <gene reference="STM2775"/>
- <gene reference="STM0586"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1994" reaction="R_DHBZS2H">
- <or>
- <gene reference="STM2775"/>
- <gene reference="STM0586"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_1995" reaction="R_ENTERtex">
- <gene reference="STM3186"/>
- </geneAssociation>
- <geneAssociation id="ga_1996" reaction="R_ENTERGLCT1">
- <gene reference="STM2773"/>
- </geneAssociation>
- <geneAssociation id="ga_1997" reaction="R_ENTERGLCT2">
- <gene reference="STM2773"/>
- </geneAssociation>
- <geneAssociation id="ga_1998" reaction="R_FEROXBFER1">
- <gene reference="STM3979"/>
- </geneAssociation>
- <geneAssociation id="ga_1999" reaction="R_FEROXBFER2">
- <gene reference="STM3979"/>
- </geneAssociation>
- <geneAssociation id="ga_2000" reaction="R_FEROXBFER3">
- <gene reference="STM3979"/>
- </geneAssociation>
- <geneAssociation id="ga_2001" reaction="R_FEROXEFER1">
- <gene reference="STM3979"/>
- </geneAssociation>
- <geneAssociation id="ga_2002" reaction="R_FEROXEFER2">
- <gene reference="STM3979"/>
- </geneAssociation>
- <geneAssociation id="ga_2003" reaction="R_FEROXEFER3">
- <gene reference="STM3979"/>
- </geneAssociation>
- <geneAssociation id="ga_2004" reaction="R_FEROXGFER1">
- <gene reference="STM3979"/>
- </geneAssociation>
- <geneAssociation id="ga_2005" reaction="R_FEROXGFER2">
- <gene reference="STM3979"/>
- </geneAssociation>
- <geneAssociation id="ga_2006" reaction="R_FEROXGFER3">
- <gene reference="STM3979"/>
- </geneAssociation>
- <geneAssociation id="ga_2007" reaction="R_GULNLtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_2008" reaction="R_DXYLUDtex">
- <or>
- <gene reference="STM0320"/>
- <gene reference="STM0999"/>
- <gene reference="STM1473"/>
- <gene reference="STM2267"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_2009" reaction="R_MUREINLPPTP">
- <or>
- <gene reference="STM0837"/>
- <gene reference="STM1215"/>
- <gene reference="STM1375"/>
- </or>
- </geneAssociation>
- <geneAssociation id="ga_2010" reaction="R_APOLPPS">
- <gene reference="STM0047"/>
- </geneAssociation>
- <geneAssociation id="ga_2011" reaction="R_PROLPPGT160">
- <gene reference="STM3002"/>
- </geneAssociation>
- <geneAssociation id="ga_2012" reaction="R_DMBZIDS">
- <gene reference="STM2016"/>
- </geneAssociation>
- <geneAssociation id="ga_2013" reaction="R_2HH24DDH1">
- <gene reference="STM1105"/>
- </geneAssociation>
- <geneAssociation id="ga_2014" reaction="R_GALCTND">
- <gene reference="STM3828"/>
- </geneAssociation>
- <geneAssociation id="ga_2015" reaction="R_FEENTERR1">
- <gene reference="STM0586"/>
- </geneAssociation>
- <geneAssociation id="ga_2016" reaction="R_FEENTERR2">
- <gene reference="STM0586"/>
- </geneAssociation>
- <geneAssociation id="ga_2017" reaction="R_FEENTERR3">
- <gene reference="STM0586"/>
- </geneAssociation>
- <geneAssociation id="ga_2018" reaction="R_SALCHS4FER1">
- <gene reference="STM2775"/>
- </geneAssociation>
- <geneAssociation id="ga_2019" reaction="R_SALCHS4FER2">
- <gene reference="STM2775"/>
- </geneAssociation>
- <geneAssociation id="ga_2020" reaction="R_SALCHS4FER3">
- <gene reference="STM2775"/>
- </geneAssociation>
- <geneAssociation id="ga_2021" reaction="R_SALCHS4FEtonex">
- <and>
- <or>
- <gene reference="STM0585"/>
- <gene reference="STM2199"/>
- <gene reference="STM2777"/>
- </or>
- <gene reference="STM1737"/>
- <gene reference="STM3158"/>
- <gene reference="STM3159"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_2022" reaction="R_HISNH4L">
- <gene reference="STM0791"/>
- </geneAssociation>
- <geneAssociation id="ga_2023" reaction="R_AB6PGH">
- <gene reference="STM3051"/>
- </geneAssociation>
- <geneAssociation id="ga_2024" reaction="R_SARCOX">
- <gene reference="STM1160"/>
- </geneAssociation>
- <geneAssociation id="ga_2025" reaction="R_FE3HOXabcpp">
- <and>
- <gene reference="STM0194"/>
- <gene reference="STM0192"/>
- <gene reference="STM0193"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_2026" reaction="R_FEOXAMR1">
- <gene reference="STM3979"/>
- </geneAssociation>
- <geneAssociation id="ga_2027" reaction="R_FEOXAMR2">
- <gene reference="STM3979"/>
- </geneAssociation>
- <geneAssociation id="ga_2028" reaction="R_FEOXAMR3">
- <gene reference="STM3979"/>
- </geneAssociation>
- <geneAssociation id="ga_2029" reaction="R_ALPATE160pp">
- <and>
- <gene reference="STM0666"/>
- <gene reference="STM1377"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_2030" reaction="R_ALPATG160pp">
- <and>
- <gene reference="STM0666"/>
- <gene reference="STM1377"/>
- </and>
- </geneAssociation>
- <geneAssociation id="ga_2031" reaction="R_HDCAt2pp">
- <gene reference="STM2391"/>
- </geneAssociation>
- <geneAssociation id="ga_2032" reaction="R_OCDCAt2pp">
- <gene reference="STM2392"/>
- </geneAssociation>
- <geneAssociation id="ga_2033" reaction="R_OCDCEAt2pp">
- <gene reference="STM2392"/>
- </geneAssociation>
- <geneAssociation id="ga_2034" reaction="R_TTDCAt2pp">
- <gene reference="STM2393"/>
- </geneAssociation>
- <geneAssociation id="ga_2035" reaction="R_DDCAt2pp">
- <gene reference="STM2393"/>
- </geneAssociation>
- </listOfGeneAssociations>
- </annotation>
- <listOfCompartments>
- <compartment id="p" name="Periplasm" spatialDimensions="3" size="1" constant="true"/>
- <compartment id="c" name="Cytoplasm" spatialDimensions="3" size="1" constant="true"/>
- <compartment id="e" name="Extracellular" spatialDimensions="3" size="1" constant="true"/>
- </listOfCompartments>
- <listOfSpecies>
- <species id="M_dcaACP_c" name="Decanoyl-ACP-n-C100ACP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H39N2O8PRS">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C21H39N2O8PRS</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C05755</p>
- <p>PUBCHEM: 8050</p>
- </html>
- </notes>
- </species>
- <species id="M_2aobut_c" name="L-2-Amino-3-oxobutanoate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C4H7NO3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H7NO3</p>
- <p>CHEBI: 16944</p>
- <p>KEGG: C03508</p>
- <p>PUBCHEM: 6318</p>
- </html>
- </notes>
- </species>
- <species id="M_2pglyc_c" name="2-Phosphoglycolate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C2H2O6P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C2H2O6P</p>
- <p>CHEBI: 17150</p>
- <p>KEGG: C00988</p>
- <p>PUBCHEM: 4234</p>
- </html>
- </notes>
- </species>
- <species id="M_eig3p_c" name="D-erythro-1-Imidazol-4-yl-glycerol-3-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H9N2O6P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H9N2O6P</p>
- <p>CHEBI: 17805</p>
- <p>KEGG: C04666</p>
- <p>PUBCHEM: 7249</p>
- </html>
- </notes>
- </species>
- <species id="M_2ahbut_c" name="S-2-Aceto-2-hydroxybutanoate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H9O4</p>
- <p>CHEBI: 27681 49256</p>
- <p>KEGG: C06006</p>
- <p>PUBCHEM: 8279</p>
- </html>
- </notes>
- </species>
- <species id="M_feoxam_p" name="ferroxamine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C25H46FeN6O8">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C25H46FeN6O8</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C07597</p>
- <p>PUBCHEM: 9799</p>
- </html>
- </notes>
- </species>
- <species id="M_pyr_c" name="Pyruvate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H3O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H3O3</p>
- <p>CHEBI: 32816</p>
- <p>KEGG: C00022</p>
- <p>PUBCHEM: 3324</p>
- </html>
- </notes>
- </species>
- <species id="M_pyr_e" name="Pyruvate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H3O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H3O3</p>
- <p>CHEBI: 32816</p>
- <p>KEGG: C00022</p>
- <p>PUBCHEM: 3324</p>
- </html>
- </notes>
- </species>
- <species id="M_pyr_p" name="Pyruvate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H3O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H3O3</p>
- <p>CHEBI: 32816</p>
- <p>KEGG: C00022</p>
- <p>PUBCHEM: 3324</p>
- </html>
- </notes>
- </species>
- <species id="M_tdecoa_c" name="Tetradecenoyl-CoA-n-C141CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H56N7O17P3S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C35H56N7O17P3S</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C06737</p>
- <p>PUBCHEM: 8959</p>
- </html>
- </notes>
- </species>
- <species id="M_apg161_c" name="acyl-phosphatidylglycerol-n-C161" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C54H98O11P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C54H98O11P</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_met__L_p" name="L-Methionine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H11NO2S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H11NO2S</p>
- <p>CHEBI: 16643</p>
- <p>KEGG: C00073</p>
- <p>PUBCHEM: 3373</p>
- </html>
- </notes>
- </species>
- <species id="M_xtsn_e" name="Xanthosine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C10H12N4O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H12N4O6</p>
- <p>CHEBI: 18107</p>
- <p>KEGG: C01762</p>
- <p>PUBCHEM: 4895</p>
- </html>
- </notes>
- </species>
- <species id="M_ala__L_e" name="L-Alanine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H7NO2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H7NO2</p>
- <p>CHEBI: 16977</p>
- <p>KEGG: C00041</p>
- <p>PUBCHEM: 3343</p>
- </html>
- </notes>
- </species>
- <species id="M_ala__L_c" name="L-Alanine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H7NO2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H7NO2</p>
- <p>CHEBI: 16977</p>
- <p>KEGG: C00041</p>
- <p>PUBCHEM: 3343</p>
- </html>
- </notes>
- </species>
- <species id="M_octa_c" name="octanoate-n-C80" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H15O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C8H15O2</p>
- <p>CHEBI: 28837</p>
- <p>KEGG: C06423</p>
- <p>PUBCHEM: 8658</p>
- </html>
- </notes>
- </species>
- <species id="M_met__L_e" name="L-Methionine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H11NO2S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H11NO2S</p>
- <p>CHEBI: 16643</p>
- <p>KEGG: C00073</p>
- <p>PUBCHEM: 3373</p>
- </html>
- </notes>
- </species>
- <species id="M_3hmrsACP_c" name="R-3-Hydroxytetradecanoyl-acyl-carrier-protein" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C25H47N2O9PRS">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C25H47N2O9PRS</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C04688</p>
- <p>PUBCHEM: 7269</p>
- </html>
- </notes>
- </species>
- <species id="M_met__L_c" name="L-Methionine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H11NO2S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H11NO2S</p>
- <p>CHEBI: 16643</p>
- <p>KEGG: C00073</p>
- <p>PUBCHEM: 3373</p>
- </html>
- </notes>
- </species>
- <species id="M_octa_p" name="octanoate-n-C80" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H15O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C8H15O2</p>
- <p>CHEBI: 28837</p>
- <p>KEGG: C06423</p>
- <p>PUBCHEM: 8658</p>
- </html>
- </notes>
- </species>
- <species id="M_ala__L_p" name="L-Alanine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H7NO2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H7NO2</p>
- <p>CHEBI: 16977</p>
- <p>KEGG: C00041</p>
- <p>PUBCHEM: 3343</p>
- </html>
- </notes>
- </species>
- <species id="M_ala__B_p" name="beta-Alanine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H7NO2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H7NO2</p>
- <p>CHEBI: 16958</p>
- <p>KEGG: C00099</p>
- <p>PUBCHEM: 3399</p>
- </html>
- </notes>
- </species>
- <species id="M_ala__B_e" name="beta-Alanine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H7NO2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H7NO2</p>
- <p>CHEBI: 16958</p>
- <p>KEGG: C00099</p>
- <p>PUBCHEM: 3399</p>
- </html>
- </notes>
- </species>
- <species id="M_pnto__R_e" name="R-Pantothenate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H16NO5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H16NO5</p>
- <p>CHEBI: 29032 46905 7916</p>
- <p>KEGG: C00864</p>
- <p>PUBCHEM: 4121</p>
- </html>
- </notes>
- </species>
- <species id="M_ala__B_c" name="beta-Alanine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H7NO2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H7NO2</p>
- <p>CHEBI: 16958</p>
- <p>KEGG: C00099</p>
- <p>PUBCHEM: 3399</p>
- </html>
- </notes>
- </species>
- <species id="M_8aonn_c" name="8-Amino-7-oxononanoate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C9H17NO3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H17NO3</p>
- <p>CHEBI: 12266 15830</p>
- <p>KEGG: C01092</p>
- <p>PUBCHEM: 4327</p>
- </html>
- </notes>
- </species>
- <species id="M_dmso_e" name="Dimethyl-sulfoxide" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C2H6OS">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C2H6OS</p>
- <p>CHEBI: 28262</p>
- <p>KEGG: C11143</p>
- <p>PUBCHEM: 13325</p>
- </html>
- </notes>
- </species>
- <species id="M_pnto__R_c" name="R-Pantothenate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H16NO5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H16NO5</p>
- <p>CHEBI: 29032 46905 7916</p>
- <p>KEGG: C00864</p>
- <p>PUBCHEM: 4121</p>
- </html>
- </notes>
- </species>
- <species id="M_2agpe180_p" name="2-Acyl-sn-glycero-3-phosphoethanolamine-n-C180" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C23H48NO7P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C23H48NO7P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C05973</p>
- <p>PUBCHEM: 8253</p>
- </html>
- </notes>
- </species>
- <species id="M_5dglcn_e" name="5-Dehydro-D-gluconate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O7">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H9O7</p>
- <p>CHEBI: 17426</p>
- <p>KEGG: C01062</p>
- <p>PUBCHEM: 4301</p>
- </html>
- </notes>
- </species>
- <species id="M_dmso_p" name="Dimethyl-sulfoxide" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C2H6OS">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C2H6OS</p>
- <p>CHEBI: 28262</p>
- <p>KEGG: C11143</p>
- <p>PUBCHEM: 13325</p>
- </html>
- </notes>
- </species>
- <species id="M_ps141_c" name="phosphatidylserine-ditetradec-7-enoyl-n-C141" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C34H61N1O10P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C34H61N1O10P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C02737</p>
- <p>PUBCHEM: 5698</p>
- </html>
- </notes>
- </species>
- <species id="M_arbt6p_c" name="Arbutin-6-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C12H15O10P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C12H15O10P</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C06187</p>
- <p>PUBCHEM: 8438</p>
- </html>
- </notes>
- </species>
- <species id="M_2agpe180_c" name="2-Acyl-sn-glycero-3-phosphoethanolamine-n-C180" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C23H48NO7P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C23H48NO7P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C05973</p>
- <p>PUBCHEM: 8253</p>
- </html>
- </notes>
- </species>
- <species id="M_uamag_c" name="UDP-N-acetylmuramoyl-L-alanyl-D-glutamate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C28H39N5O23P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C28H39N5O23P2</p>
- <p>CHEBI: 16970</p>
- <p>KEGG: C00692</p>
- <p>PUBCHEM: 3960</p>
- </html>
- </notes>
- </species>
- <species id="M_pmcoa_c" name="Pimeloyl-CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C28H41N7O19P3S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C28H41N7O19P3S</p>
- <p>CHEBI: 15504</p>
- <p>KEGG: C01063</p>
- <p>PUBCHEM: 4302</p>
- </html>
- </notes>
- </species>
- <species id="M_anhgm_p" name="N-Acetyl-D-glucosamine-anhydrous-N-Acetylmuramic-acid" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H29N2O12">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C19H29N2O12</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_atp_c" name="ATP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H12N5O13P3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H12N5O13P3</p>
- <p>CHEBI: 15422</p>
- <p>KEGG: C00002</p>
- <p>PUBCHEM: 3304</p>
- </html>
- </notes>
- </species>
- <species id="M_ump_e" name="UMP" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H11N2O9P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H11N2O9P</p>
- <p>CHEBI: 16695</p>
- <p>KEGG: C00105</p>
- <p>PUBCHEM: 3405</p>
- </html>
- </notes>
- </species>
- <species id="M_anhgm_e" name="N-Acetyl-D-glucosamine-anhydrous-N-Acetylmuramic-acid" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H29N2O12">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C19H29N2O12</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_ump_p" name="UMP" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H11N2O9P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H11N2O9P</p>
- <p>CHEBI: 16695</p>
- <p>KEGG: C00105</p>
- <p>PUBCHEM: 3405</p>
- </html>
- </notes>
- </species>
- <species id="M_coa_c" name="Coenzyme-A" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C21H32N7O16P3S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C21H32N7O16P3S</p>
- <p>CHEBI: 15346</p>
- <p>KEGG: C00010</p>
- <p>PUBCHEM: 3312</p>
- </html>
- </notes>
- </species>
- <species id="M_anhgm_c" name="N-Acetyl-D-glucosamine-anhydrous-N-Acetylmuramic-acid" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H29N2O12">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C19H29N2O12</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_LalaDglu_c" name="L-alanine-D-glutamate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H13N2O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C8H13N2O5</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_din_p" name="Deoxyinosine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C10H12N4O4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H12N4O4</p>
- <p>CHEBI: 28997</p>
- <p>KEGG: C05512</p>
- <p>PUBCHEM: 7859</p>
- </html>
- </notes>
- </species>
- <species id="M_3hbcoa_c" name="S-3-Hydroxybutanoyl-CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C25H38N7O18P3S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C25H38N7O18P3S</p>
- <p>CHEBI: 15453</p>
- <p>KEGG: C01144</p>
- <p>PUBCHEM: 4375</p>
- </html>
- </notes>
- </species>
- <species id="M_dutp_c" name="dUTP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C9H11N2O14P3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H11N2O14P3</p>
- <p>CHEBI: 17625</p>
- <p>KEGG: C00460</p>
- <p>PUBCHEM: 3744</p>
- </html>
- </notes>
- </species>
- <species id="M_din_c" name="Deoxyinosine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C10H12N4O4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H12N4O4</p>
- <p>CHEBI: 28997</p>
- <p>KEGG: C05512</p>
- <p>PUBCHEM: 7859</p>
- </html>
- </notes>
- </species>
- <species id="M_crnDcoa_c" name="D-carnitinyl-CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C28H46N8O18P3S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C28H46N8O18P3S</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 605</p>
- </html>
- </notes>
- </species>
- <species id="M_din_e" name="Deoxyinosine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C10H12N4O4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H12N4O4</p>
- <p>CHEBI: 28997</p>
- <p>KEGG: C05512</p>
- <p>PUBCHEM: 7859</p>
- </html>
- </notes>
- </species>
- <species id="M_glcur1p_e" name="D-Glucuronate-1-phosphate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H8O10P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H8O10P</p>
- <p>CHEBI: 28547</p>
- <p>KEGG: C05385</p>
- <p>PUBCHEM: 7759</p>
- </html>
- </notes>
- </species>
- <species id="M_2ohph_c" name="2-Octaprenyl-6-hydroxyphenol" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C46H70O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C46H70O2</p>
- <p>CHEBI: 1233</p>
- <p>KEGG: C05811</p>
- <p>PUBCHEM: 8106</p>
- </html>
- </notes>
- </species>
- <species id="M_gtp_p" name="GTP" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H12N5O14P3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H12N5O14P3</p>
- <p>CHEBI: 15996</p>
- <p>KEGG: C00044</p>
- <p>PUBCHEM: 3346</p>
- </html>
- </notes>
- </species>
- <species id="M_amob_c" name="S-Adenosyl-4-methylthio-2-oxobutanoate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C15H19N5O6S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C15H19N5O6S</p>
- <p>CHEBI: 16490</p>
- <p>KEGG: C04425</p>
- <p>PUBCHEM: 7057</p>
- </html>
- </notes>
- </species>
- <species id="M_udcdp3Oag_p" name="Undecaprenyl-diphosphate-O-antigene-3x" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C127H210O58P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C127H210O58P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_gtp_e" name="GTP" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H12N5O14P3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H12N5O14P3</p>
- <p>CHEBI: 15996</p>
- <p>KEGG: C00044</p>
- <p>PUBCHEM: 3346</p>
- </html>
- </notes>
- </species>
- <species id="M_gtp_c" name="GTP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H12N5O14P3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H12N5O14P3</p>
- <p>CHEBI: 15996</p>
- <p>KEGG: C00044</p>
- <p>PUBCHEM: 3346</p>
- </html>
- </notes>
- </species>
- <species id="M_cyst__L_c" name="L-Cystathionine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C7H14N2O4S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C7H14N2O4S</p>
- <p>CHEBI: 17482</p>
- <p>KEGG: C02291</p>
- <p>PUBCHEM: 5347</p>
- </html>
- </notes>
- </species>
- <species id="M_adn_p" name="Adenosine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C10H13N5O4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H13N5O4</p>
- <p>CHEBI: 16335</p>
- <p>KEGG: C00212</p>
- <p>PUBCHEM: 3512</p>
- </html>
- </notes>
- </species>
- <species id="M_3mop_c" name="S-3-Methyl-2-oxopentanoate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H9O3</p>
- <p>CHEBI: 15614</p>
- <p>KEGG: C00671</p>
- <p>PUBCHEM: 3940</p>
- </html>
- </notes>
- </species>
- <species id="M_cbl1_p" name="Cob-I-alamin" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C62H88CoN13O14P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C62H88CoN13O14P</p>
- <p>CHEBI: 15982</p>
- <p>KEGG: C00853</p>
- <p>PUBCHEM: 4110</p>
- </html>
- </notes>
- </species>
- <species id="M_valtrna_c" name="L-Valyl-tRNA-Val" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C5H10NOR">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H10NOR</p>
- <p>CHEBI: 29164</p>
- <p>KEGG: C02554</p>
- <p>PUBCHEM: 5555</p>
- </html>
- </notes>
- </species>
- <species id="M_no2_p" name="Nitrite" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="NO2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: NO2</p>
- <p>CHEBI: 16301</p>
- <p>KEGG: C00088</p>
- <p>PUBCHEM: 3388</p>
- </html>
- </notes>
- </species>
- <species id="M_fe3dhbzs3_p" name="fe3dhbzs3_p" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: </p>
- <p>CHEBI: NA</p>
- <p>KEGG: NA</p>
- <p>PUBCHEM: NA</p>
- </html>
- </notes>
- </species>
- <species id="M_cbl1_c" name="Cob-I-alamin" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C62H88CoN13O14P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C62H88CoN13O14P</p>
- <p>CHEBI: 15982</p>
- <p>KEGG: C00853</p>
- <p>PUBCHEM: 4110</p>
- </html>
- </notes>
- </species>
- <species id="M_cbl1_e" name="Cob-I-alamin" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C62H88CoN13O14P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C62H88CoN13O14P</p>
- <p>CHEBI: 15982</p>
- <p>KEGG: C00853</p>
- <p>PUBCHEM: 4110</p>
- </html>
- </notes>
- </species>
- <species id="M_no2_e" name="Nitrite" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="NO2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: NO2</p>
- <p>CHEBI: 16301</p>
- <p>KEGG: C00088</p>
- <p>PUBCHEM: 3388</p>
- </html>
- </notes>
- </species>
- <species id="M_fe3dhbzs3_e" name="fe3dhbzs3_e" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: </p>
- <p>CHEBI: NA</p>
- <p>KEGG: NA</p>
- <p>PUBCHEM: NA</p>
- </html>
- </notes>
- </species>
- <species id="M_fe3dhbzs3_c" name="fe3dhbzs3_c" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: </p>
- <p>CHEBI: NA</p>
- <p>KEGG: NA</p>
- <p>PUBCHEM: NA</p>
- </html>
- </notes>
- </species>
- <species id="M_no2_c" name="Nitrite" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="NO2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: NO2</p>
- <p>CHEBI: 16301</p>
- <p>KEGG: C00088</p>
- <p>PUBCHEM: 3388</p>
- </html>
- </notes>
- </species>
- <species id="M_2mecdp_c" name="2-C-methyl-D-erythritol-2-4-cyclodiphosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H10O9P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H10O9P2</p>
- <p>CHEBI: 18425</p>
- <p>KEGG: C11453</p>
- <p>PUBCHEM: 13625</p>
- </html>
- </notes>
- </species>
- <species id="M_ncam_c" name="Nicotinamide" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H6N2O">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H6N2O</p>
- <p>CHEBI: 17154</p>
- <p>KEGG: C00153</p>
- <p>PUBCHEM: 3453</p>
- </html>
- </notes>
- </species>
- <species id="M_lipa_p" name="KDO-2-lipid-A" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C110H196N2O39P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C110H196N2O39P2</p>
- <p>CHEBI: 27963</p>
- <p>KEGG: C06026</p>
- <p>PUBCHEM: 8298</p>
- </html>
- </notes>
- </species>
- <species id="M_2ombzl_c" name="2-Octaprenyl-6-methoxy-1-4-benzoquinol" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C47H72O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C47H72O3</p>
- <p>CHEBI: 17551</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 958 ??5650</p>
- </html>
- </notes>
- </species>
- <species id="M_lipa_e" name="KDO-2-lipid-A" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C110H196N2O39P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C110H196N2O39P2</p>
- <p>CHEBI: 27963</p>
- <p>KEGG: C06026</p>
- <p>PUBCHEM: 8298</p>
- </html>
- </notes>
- </species>
- <species id="M_ascb6p_c" name="L-ascorbate-6-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H7O9P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H7O9P</p>
- <p>CHEBI: 15946</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 656479???3385</p>
- </html>
- </notes>
- </species>
- <species id="M_lipa_c" name="KDO-2-lipid-A" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C110H196N2O39P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C110H196N2O39P2</p>
- <p>CHEBI: 27963</p>
- <p>KEGG: C06026</p>
- <p>PUBCHEM: 8298</p>
- </html>
- </notes>
- </species>
- <species id="M_cbp_c" name="Carbamoyl-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="CH2NO5P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: CH2NO5P</p>
- <p>CHEBI: 17672</p>
- <p>KEGG: C00169</p>
- <p>PUBCHEM: 3469</p>
- </html>
- </notes>
- </species>
- <species id="M_arbtn_e" name="aerobactin-minus-Fe3" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C22H33N4O13">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C22H33N4O13</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_asn__L_c" name="L-Asparagine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C4H8N2O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H8N2O3</p>
- <p>CHEBI: 17196</p>
- <p>KEGG: C00152</p>
- <p>PUBCHEM: 3452</p>
- </html>
- </notes>
- </species>
- <species id="M_asn__L_e" name="L-Asparagine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C4H8N2O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H8N2O3</p>
- <p>CHEBI: 17196</p>
- <p>KEGG: C00152</p>
- <p>PUBCHEM: 3452</p>
- </html>
- </notes>
- </species>
- <species id="M_alaala_p" name="D-Alanyl-D-alanine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H12N2O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H12N2O3</p>
- <p>CHEBI: 16576</p>
- <p>KEGG: C00993</p>
- <p>PUBCHEM: 4239</p>
- </html>
- </notes>
- </species>
- <species id="M_arbtn_c" name="aerobactin-minus-Fe3" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C22H33N4O13">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C22H33N4O13</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_alaala_e" name="D-Alanyl-D-alanine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H12N2O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H12N2O3</p>
- <p>CHEBI: 16576</p>
- <p>KEGG: C00993</p>
- <p>PUBCHEM: 4239</p>
- </html>
- </notes>
- </species>
- <species id="M_asn__L_p" name="L-Asparagine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C4H8N2O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H8N2O3</p>
- <p>CHEBI: 17196</p>
- <p>KEGG: C00152</p>
- <p>PUBCHEM: 3452</p>
- </html>
- </notes>
- </species>
- <species id="M_2omph_c" name="2-Octaprenyl-6-methoxyphenol" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C47H72O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C47H72O2</p>
- <p>CHEBI: 1235</p>
- <p>KEGG: C05812</p>
- <p>PUBCHEM: 8107</p>
- </html>
- </notes>
- </species>
- <species id="M_arbtn_p" name="aerobactin-minus-Fe3" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C22H33N4O13">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C22H33N4O13</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_alaala_c" name="D-Alanyl-D-alanine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H12N2O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H12N2O3</p>
- <p>CHEBI: 16576</p>
- <p>KEGG: C00993</p>
- <p>PUBCHEM: 4239</p>
- </html>
- </notes>
- </species>
- <species id="M_h2o2_p" name="Hydrogen-peroxide" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="H2O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: H2O2</p>
- <p>CHEBI: 16240</p>
- <p>KEGG: C00027</p>
- <p>PUBCHEM: 3329</p>
- </html>
- </notes>
- </species>
- <species id="M_5aizc_c" name="5-amino-1-5-phospho-D-ribosyl-imidazole-4-carboxylate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C9H11N3O9P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H11N3O9P</p>
- <p>CHEBI: 28413</p>
- <p>KEGG: C04751</p>
- <p>PUBCHEM: 7321</p>
- </html>
- </notes>
- </species>
- <species id="M_codscl7_c" name="Cobalt-precorrin-7" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-7" fbc:chemicalFormula="C45H49CoN4O16">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C45H49CoN4O16</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C16244</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_h2o2_c" name="Hydrogen-peroxide" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="H2O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: H2O2</p>
- <p>CHEBI: 16240</p>
- <p>KEGG: C00027</p>
- <p>PUBCHEM: 3329</p>
- </html>
- </notes>
- </species>
- <species id="M_nflgln_c" name="N-Formimino-L-glutamate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9N2O4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H9N2O4</p>
- <p>CHEBI: 7274</p>
- <p>KEGG: C00439</p>
- <p>PUBCHEM: 3728</p>
- </html>
- </notes>
- </species>
- <species id="M_h2o2_e" name="Hydrogen-peroxide" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="H2O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: H2O2</p>
- <p>CHEBI: 16240</p>
- <p>KEGG: C00027</p>
- <p>PUBCHEM: 3329</p>
- </html>
- </notes>
- </species>
- <species id="M_3hddecACP_c" name="R-3-Hydroxydodecanoyl-acyl-carrier-protein" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C23H43N2O9PRS">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C23H43N2O9PRS</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C05757</p>
- <p>PUBCHEM: 8052</p>
- </html>
- </notes>
- </species>
- <species id="M_23dhba_c" name="2-3-Dihydroxybenzoyl-adenylate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H17N5O10P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C17H17N5O10P</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C04030</p>
- <p>PUBCHEM: 6734</p>
- </html>
- </notes>
- </species>
- <species id="M_octa_e" name="octanoate-n-C80" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H15O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C8H15O2</p>
- <p>CHEBI: 28837</p>
- <p>KEGG: C06423</p>
- <p>PUBCHEM: 8658</p>
- </html>
- </notes>
- </species>
- <species id="M_acglu_c" name="N-Acetyl-L-glutamate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C7H9NO5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C7H9NO5</p>
- <p>CHEBI: 17533 44337</p>
- <p>KEGG: C00624</p>
- <p>PUBCHEM: 3897</p>
- </html>
- </notes>
- </species>
- <species id="M_ttdca_p" name="tetradecanoate-n-C140" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H27O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C14H27O2</p>
- <p>CHEBI: 28875 30807</p>
- <p>KEGG: C06424</p>
- <p>PUBCHEM: 8659</p>
- </html>
- </notes>
- </species>
- <species id="M_codscl3_c" name="Cobalt-precorrin-3" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-7" fbc:chemicalFormula="C43H41CoN4O16">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C43H41CoN4O16</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C11539</p>
- <p>PUBCHEM: 13706</p>
- </html>
- </notes>
- </species>
- <species id="M_cddec5eACP_c" name="cis-dodec-5-enoyl-acyl-carrier-protein-n-C121" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C23H41N2O8PRS">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C23H41N2O8PRS</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_ttdca_e" name="tetradecanoate-n-C140" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H27O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C14H27O2</p>
- <p>CHEBI: 28875 30807</p>
- <p>KEGG: C06424</p>
- <p>PUBCHEM: 8659</p>
- </html>
- </notes>
- </species>
- <species id="M_ttdca_c" name="tetradecanoate-n-C140" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H27O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C14H27O2</p>
- <p>CHEBI: 28875 30807</p>
- <p>KEGG: C06424</p>
- <p>PUBCHEM: 8659</p>
- </html>
- </notes>
- </species>
- <species id="M_ura_c" name="Uracil" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C4H4N2O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H4N2O2</p>
- <p>CHEBI: 17568</p>
- <p>KEGG: C00106</p>
- <p>PUBCHEM: 3406</p>
- </html>
- </notes>
- </species>
- <species id="M_glyc_e" name="Glycerol" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H8O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H8O3</p>
- <p>CHEBI: 17754</p>
- <p>KEGG: C00116</p>
- <p>PUBCHEM: 3416</p>
- </html>
- </notes>
- </species>
- <species id="M_glyc_c" name="Glycerol" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H8O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H8O3</p>
- <p>CHEBI: 17754</p>
- <p>KEGG: C00116</p>
- <p>PUBCHEM: 3416</p>
- </html>
- </notes>
- </species>
- <species id="M_ura_e" name="Uracil" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C4H4N2O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H4N2O2</p>
- <p>CHEBI: 17568</p>
- <p>KEGG: C00106</p>
- <p>PUBCHEM: 3406</p>
- </html>
- </notes>
- </species>
- <species id="M_acmum_p" name="N-Acetylmuramate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H18NO8">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C11H18NO8</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C02713</p>
- <p>PUBCHEM: 5676</p>
- </html>
- </notes>
- </species>
- <species id="M_au_c" name="Gold-Au" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: </p>
- <p>CHEBI: 29287</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_ura_p" name="Uracil" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C4H4N2O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H4N2O2</p>
- <p>CHEBI: 17568</p>
- <p>KEGG: C00106</p>
- <p>PUBCHEM: 3406</p>
- </html>
- </notes>
- </species>
- <species id="M_kdo2lipid4p_c" name="KDO-2-lipid-IV-A-with-palmitoleoyl" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C100H176N2O38P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C100H176N2O38P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_glyc_p" name="Glycerol" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H8O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H8O3</p>
- <p>CHEBI: 17754</p>
- <p>KEGG: C00116</p>
- <p>PUBCHEM: 3416</p>
- </html>
- </notes>
- </species>
- <species id="M_chit6p_c" name="chit6p_c" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: </p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 853844</p>
- </html>
- </notes>
- </species>
- <species id="M_tre_p" name="Trehalose" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C12H22O11">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C12H22O11</p>
- <p>CHEBI: 16551</p>
- <p>KEGG: C01083</p>
- <p>PUBCHEM: 4320</p>
- </html>
- </notes>
- </species>
- <species id="M_tre_c" name="Trehalose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C12H22O11">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C12H22O11</p>
- <p>CHEBI: 16551</p>
- <p>KEGG: C01083</p>
- <p>PUBCHEM: 4320</p>
- </html>
- </notes>
- </species>
- <species id="M_cdpglc_c" name="CDP-glucose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C15H23N3O16P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C15H23N3O16P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C00501</p>
- <p>PUBCHEM: 3784</p>
- </html>
- </notes>
- </species>
- <species id="M_tre_e" name="Trehalose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C12H22O11">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C12H22O11</p>
- <p>CHEBI: 16551</p>
- <p>KEGG: C01083</p>
- <p>PUBCHEM: 4320</p>
- </html>
- </notes>
- </species>
- <species id="M_ps2_ST_p" name="ps2_ST_p" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: </p>
- <p>CHEBI: NA</p>
- <p>KEGG: NA</p>
- <p>PUBCHEM: NA</p>
- </html>
- </notes>
- </species>
- <species id="M_ser__L_p" name="L-Serine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H7NO3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H7NO3</p>
- <p>CHEBI: 17115</p>
- <p>KEGG: C00065</p>
- <p>PUBCHEM: 3365</p>
- </html>
- </notes>
- </species>
- <species id="M_ac_p" name="Acetate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H3O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C2H3O2</p>
- <p>CHEBI: 15366</p>
- <p>KEGG: C00033</p>
- <p>PUBCHEM: 3335</p>
- </html>
- </notes>
- </species>
- <species id="M_ser__L_c" name="L-Serine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H7NO3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H7NO3</p>
- <p>CHEBI: 17115</p>
- <p>KEGG: C00065</p>
- <p>PUBCHEM: 3365</p>
- </html>
- </notes>
- </species>
- <species id="M_ser__L_e" name="L-Serine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H7NO3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H7NO3</p>
- <p>CHEBI: 17115</p>
- <p>KEGG: C00065</p>
- <p>PUBCHEM: 3365</p>
- </html>
- </notes>
- </species>
- <species id="M_4ahmmp_c" name="4-Amino-5-hydroxymethyl-2-methylpyrimidine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H9N3O">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H9N3O</p>
- <p>CHEBI: 16892</p>
- <p>KEGG: C01279</p>
- <p>PUBCHEM: 4498</p>
- </html>
- </notes>
- </species>
- <species id="M_23dhmb_c" name="R-2-3-Dihydroxy-3-methylbutanoate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H9O4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H9O4</p>
- <p>CHEBI: 15684 49072</p>
- <p>KEGG: C04272</p>
- <p>PUBCHEM: 6935</p>
- </html>
- </notes>
- </species>
- <species id="M_ac_c" name="Acetate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H3O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C2H3O2</p>
- <p>CHEBI: 15366</p>
- <p>KEGG: C00033</p>
- <p>PUBCHEM: 3335</p>
- </html>
- </notes>
- </species>
- <species id="M_ac_e" name="Acetate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H3O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C2H3O2</p>
- <p>CHEBI: 15366</p>
- <p>KEGG: C00033</p>
- <p>PUBCHEM: 3335</p>
- </html>
- </notes>
- </species>
- <species id="M_2odecg3p_c" name="2-octadecanoyl-sn-glycerol-3-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H42O7P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C21H42O7P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C03974</p>
- <p>PUBCHEM: 6693</p>
- </html>
- </notes>
- </species>
- <species id="M_tcynt_p" name="Thiocyanate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CNS">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: CNS</p>
- <p>CHEBI: 29200</p>
- <p>KEGG: C01755</p>
- <p>PUBCHEM: 4888</p>
- </html>
- </notes>
- </species>
- <species id="M_2dmmql8_c" name="2-Demethylmenaquinol-8" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C50H72O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C50H72O2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_sbzcoa_c" name="O-Succinylbenzoyl-CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C32H39N7O20P3S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C32H39N7O20P3S</p>
- <p>CHEBI: 15509</p>
- <p>KEGG: C03160</p>
- <p>PUBCHEM: 6045</p>
- </html>
- </notes>
- </species>
- <species id="M_tcynt_e" name="Thiocyanate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CNS">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: CNS</p>
- <p>CHEBI: 29200</p>
- <p>KEGG: C01755</p>
- <p>PUBCHEM: 4888</p>
- </html>
- </notes>
- </species>
- <species id="M_tcynt_c" name="Thiocyanate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CNS">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: CNS</p>
- <p>CHEBI: 29200</p>
- <p>KEGG: C01755</p>
- <p>PUBCHEM: 4888</p>
- </html>
- </notes>
- </species>
- <species id="M_cbi_p" name="Cobinamide" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C48H72CoN11O8">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C48H72CoN11O8</p>
- <p>CHEBI: 28956</p>
- <p>KEGG: C05774</p>
- <p>PUBCHEM: 8069</p>
- </html>
- </notes>
- </species>
- <species id="M_anhgm3p_p" name="N-Acetyl-D-glucosamine-anhydrous-N-Acetylmuramyl-tripeptide" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C34H52N6O19">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C34H52N6O19</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_acald_c" name="Acetaldehyde" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C2H4O">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C2H4O</p>
- <p>CHEBI: 15343</p>
- <p>KEGG: C00084</p>
- <p>PUBCHEM: 3384</p>
- </html>
- </notes>
- </species>
- <species id="M_colipa_p" name="core-oligosaccharide-lipid-A" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-11" fbc:chemicalFormula="C176H303N2O100P4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C176H303N2O100P4</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_12dgr141_c" name="1-2-Diacyl-sn-glycerol-ditetradec-7-enoyl-n-C141" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C31H56O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C31H56O5</p>
- <p>CHEBI: 17815</p>
- <p>KEGG: C00641</p>
- <p>PUBCHEM: 3914</p>
- </html>
- </notes>
- </species>
- <species id="M_acald_e" name="Acetaldehyde" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C2H4O">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C2H4O</p>
- <p>CHEBI: 15343</p>
- <p>KEGG: C00084</p>
- <p>PUBCHEM: 3384</p>
- </html>
- </notes>
- </species>
- <species id="M_cbi_c" name="Cobinamide" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C48H72CoN11O8">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C48H72CoN11O8</p>
- <p>CHEBI: 28956</p>
- <p>KEGG: C05774</p>
- <p>PUBCHEM: 8069</p>
- </html>
- </notes>
- </species>
- <species id="M_cbi_e" name="Cobinamide" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C48H72CoN11O8">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C48H72CoN11O8</p>
- <p>CHEBI: 28956</p>
- <p>KEGG: C05774</p>
- <p>PUBCHEM: 8069</p>
- </html>
- </notes>
- </species>
- <species id="M_colipa_c" name="core-oligosaccharide-lipid-A" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-11" fbc:chemicalFormula="C176H303N2O100P4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C176H303N2O100P4</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_acald_p" name="Acetaldehyde" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C2H4O">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C2H4O</p>
- <p>CHEBI: 15343</p>
- <p>KEGG: C00084</p>
- <p>PUBCHEM: 3384</p>
- </html>
- </notes>
- </species>
- <species id="M_colipa_e" name="core-oligosaccharide-lipid-A" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-11" fbc:chemicalFormula="C176H303N2O100P4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C176H303N2O100P4</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_12dgr141_p" name="1-2-Diacyl-sn-glycerol-ditetradec-7-enoyl-n-C141" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C31H56O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C31H56O5</p>
- <p>CHEBI: 17815</p>
- <p>KEGG: C00641</p>
- <p>PUBCHEM: 3914</p>
- </html>
- </notes>
- </species>
- <species id="M_xmp_c" name="Xanthosine-5-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H11N4O9P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H11N4O9P</p>
- <p>CHEBI: 15652</p>
- <p>KEGG: C00655</p>
- <p>PUBCHEM: 3925</p>
- </html>
- </notes>
- </species>
- <species id="M_xmp_e" name="Xanthosine-5-phosphate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H11N4O9P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H11N4O9P</p>
- <p>CHEBI: 15652</p>
- <p>KEGG: C00655</p>
- <p>PUBCHEM: 3925</p>
- </html>
- </notes>
- </species>
- <species id="M_mg2_p" name="magnesium" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Mg">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: Mg</p>
- <p>CHEBI: 18420</p>
- <p>KEGG: C00305</p>
- <p>PUBCHEM: 3599</p>
- </html>
- </notes>
- </species>
- <species id="M_xmp_p" name="Xanthosine-5-phosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H11N4O9P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H11N4O9P</p>
- <p>CHEBI: 15652</p>
- <p>KEGG: C00655</p>
- <p>PUBCHEM: 3925</p>
- </html>
- </notes>
- </species>
- <species id="M_acmalt_c" name="Acetyl-maltose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C14H24O12">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C14H24O12</p>
- <p>CHEBI: 2411</p>
- <p>KEGG: C02130</p>
- <p>PUBCHEM: 5209</p>
- </html>
- </notes>
- </species>
- <species id="M_dhpmp_c" name="Dihydroneopterin-monophosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H12N5O7P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H12N5O7P</p>
- <p>CHEBI: 48954</p>
- <p>KEGG: C05925</p>
- <p>PUBCHEM: 8213</p>
- </html>
- </notes>
- </species>
- <species id="M_mg2_e" name="magnesium" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Mg">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: Mg</p>
- <p>CHEBI: 18420</p>
- <p>KEGG: C00305</p>
- <p>PUBCHEM: 3599</p>
- </html>
- </notes>
- </species>
- <species id="M_mg2_c" name="magnesium" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Mg">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: Mg</p>
- <p>CHEBI: 18420</p>
- <p>KEGG: C00305</p>
- <p>PUBCHEM: 3599</p>
- </html>
- </notes>
- </species>
- <species id="M_3dhq_c" name="3-Dehydroquinate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H9O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C7H9O6</p>
- <p>CHEBI: 17947 32364</p>
- <p>KEGG: C00944</p>
- <p>PUBCHEM: 4196</p>
- </html>
- </notes>
- </species>
- <species id="M_dhptd_c" name="4-5-dihydroxy-2-3-pentanedione" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H8O4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H8O4</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C11838</p>
- <p>PUBCHEM: 14000</p>
- </html>
- </notes>
- </species>
- <species id="M_uLa4n_p" name="undecaprenyl-phosphate-4-amino-4-deoxy-L-arabinose" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C60H100N1O7P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C60H100N1O7P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_minohp_p" name="myo-Inositol-hexakisphosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-12" fbc:chemicalFormula="C6H6O24P6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H6O24P6</p>
- <p>CHEBI: 17401</p>
- <p>KEGG: C01204</p>
- <p>PUBCHEM: 4428</p>
- </html>
- </notes>
- </species>
- <species id="M_nh4_p" name="Ammonium" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="H4N">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: H4N</p>
- <p>CHEBI: 28938</p>
- <p>KEGG: C01342</p>
- <p>PUBCHEM: 4547</p>
- </html>
- </notes>
- </species>
- <species id="M_ins_e" name="Inosine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C10H12N4O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H12N4O5</p>
- <p>CHEBI: 17596</p>
- <p>KEGG: C00294</p>
- <p>PUBCHEM: 3588</p>
- </html>
- </notes>
- </species>
- <species id="M_uLa4n_c" name="undecaprenyl-phosphate-4-amino-4-deoxy-L-arabinose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C60H100N1O7P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C60H100N1O7P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_nh4_e" name="Ammonium" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="H4N">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: H4N</p>
- <p>CHEBI: 28938</p>
- <p>KEGG: C01342</p>
- <p>PUBCHEM: 4547</p>
- </html>
- </notes>
- </species>
- <species id="M_nh4_c" name="Ammonium" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="H4N">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: H4N</p>
- <p>CHEBI: 28938</p>
- <p>KEGG: C01342</p>
- <p>PUBCHEM: 4547</p>
- </html>
- </notes>
- </species>
- <species id="M_minohp_e" name="myo-Inositol-hexakisphosphate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-12" fbc:chemicalFormula="C6H6O24P6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H6O24P6</p>
- <p>CHEBI: 17401</p>
- <p>KEGG: C01204</p>
- <p>PUBCHEM: 4428</p>
- </html>
- </notes>
- </species>
- <species id="M_5mdru1p_c" name="5-Methylthio-5-deoxy-D-ribulose-1-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O7PS">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H11O7PS</p>
- <p>CHEBI: 28096</p>
- <p>KEGG: C04582</p>
- <p>PUBCHEM: 7183</p>
- </html>
- </notes>
- </species>
- <species id="M_salchs2_e" name="salchs2_e" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: </p>
- <p>CHEBI: NA</p>
- <p>KEGG: NA</p>
- <p>PUBCHEM: NA</p>
- </html>
- </notes>
- </species>
- <species id="M_salchs2_c" name="salchs2_c" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: </p>
- <p>CHEBI: NA</p>
- <p>KEGG: NA</p>
- <p>PUBCHEM: NA</p>
- </html>
- </notes>
- </species>
- <species id="M_2dr5p_c" name="2-Deoxy-D-ribose-5-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H9O7P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H9O7P</p>
- <p>CHEBI: 16132</p>
- <p>KEGG: C00673</p>
- <p>PUBCHEM: 3942</p>
- </html>
- </notes>
- </species>
- <species id="M_salchs2_p" name="salchs2_p" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: </p>
- <p>CHEBI: NA</p>
- <p>KEGG: NA</p>
- <p>PUBCHEM: NA</p>
- </html>
- </notes>
- </species>
- <species id="M_pe160_p" name="phosphatidylethanolamine-dihexadecanoyl-n-C160" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C37H74N1O8P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C37H74N1O8P1</p>
- <p>CHEBI: 16038</p>
- <p>KEGG: C00350</p>
- <p>PUBCHEM: 3643</p>
- </html>
- </notes>
- </species>
- <species id="M_murein5p5p_p" name="two-linked-disacharide-pentapeptide-murein-units-uncrosslinked-middle-of-chain" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C80H124N16O42">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C80H124N16O42</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_pe160_c" name="phosphatidylethanolamine-dihexadecanoyl-n-C160" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C37H74N1O8P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C37H74N1O8P1</p>
- <p>CHEBI: 16038</p>
- <p>KEGG: C00350</p>
- <p>PUBCHEM: 3643</p>
- </html>
- </notes>
- </species>
- <species id="M_gdp_e" name="GDP" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H12N5O11P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H12N5O11P2</p>
- <p>CHEBI: 17552</p>
- <p>KEGG: C00035</p>
- <p>PUBCHEM: 3337</p>
- </html>
- </notes>
- </species>
- <species id="M_gdp_c" name="GDP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H12N5O11P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H12N5O11P2</p>
- <p>CHEBI: 17552</p>
- <p>KEGG: C00035</p>
- <p>PUBCHEM: 3337</p>
- </html>
- </notes>
- </species>
- <species id="M_tre6p_c" name="alpha-alpha-Trehalose-6-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C12H21O14P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C12H21O14P</p>
- <p>CHEBI: 18283</p>
- <p>KEGG: C00689</p>
- <p>PUBCHEM: 3958</p>
- </html>
- </notes>
- </species>
- <species id="M_5aop_c" name="5-Amino-4-oxopentanoate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H9NO3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H9NO3</p>
- <p>CHEBI: 17549</p>
- <p>KEGG: C00430</p>
- <p>PUBCHEM: 3719</p>
- </html>
- </notes>
- </species>
- <species id="M_gdp_p" name="GDP" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H12N5O11P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H12N5O11P2</p>
- <p>CHEBI: 17552</p>
- <p>KEGG: C00035</p>
- <p>PUBCHEM: 3337</p>
- </html>
- </notes>
- </species>
- <species id="M_5mta_c" name="5-Methylthioadenosine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C11H15N5O3S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C11H15N5O3S</p>
- <p>CHEBI: 17509</p>
- <p>KEGG: C00170</p>
- <p>PUBCHEM: 3470</p>
- </html>
- </notes>
- </species>
- <species id="M_1tdecg3p_c" name="1-tetradecanoyl-sn-glycerol-3-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C17H33O7P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C17H33O7P1</p>
- <p>CHEBI: 16975</p>
- <p>KEGG: C00681</p>
- <p>PUBCHEM: 3950</p>
- </html>
- </notes>
- </species>
- <species id="M_5dglcn_c" name="5-Dehydro-D-gluconate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O7">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H9O7</p>
- <p>CHEBI: 17426</p>
- <p>KEGG: C01062</p>
- <p>PUBCHEM: 4301</p>
- </html>
- </notes>
- </species>
- <species id="M_3c3hmp_c" name="3-Carboxy-3-hydroxy-4-methylpentanoate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C7H10O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C7H10O5</p>
- <p>CHEBI: 1178 35128</p>
- <p>KEGG: C02504</p>
- <p>PUBCHEM: 5516</p>
- </html>
- </notes>
- </species>
- <species id="M_ddcacoa_c" name="Dodecanoyl-CoA-n-C120CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H54N7O17P3S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C33H54N7O17P3S</p>
- <p>CHEBI: 15521</p>
- <p>KEGG: C01832</p>
- <p>PUBCHEM: 4951</p>
- </html>
- </notes>
- </species>
- <species id="M_12ppd__S_e" name="S-Propane-1-2-diol" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H8O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H8O2</p>
- <p>CHEBI: 29002</p>
- <p>KEGG: C02917</p>
- <p>PUBCHEM: 5840</p>
- </html>
- </notes>
- </species>
- <species id="M_12ppd__S_c" name="S-Propane-1-2-diol" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H8O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H8O2</p>
- <p>CHEBI: 29002</p>
- <p>KEGG: C02917</p>
- <p>PUBCHEM: 5840</p>
- </html>
- </notes>
- </species>
- <species id="M_1tdecg3p_p" name="1-tetradecanoyl-sn-glycerol-3-phosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C17H33O7P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C17H33O7P1</p>
- <p>CHEBI: 16975</p>
- <p>KEGG: C00681</p>
- <p>PUBCHEM: 3950</p>
- </html>
- </notes>
- </species>
- <species id="M_hmfurn_c" name="4-hydroxy-5-methyl-3-2H-furanone" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H6O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H6O3</p>
- <p>CHEBI: 11851 16530</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 4564493??3441</p>
- </html>
- </notes>
- </species>
- <species id="M_12ppd__S_p" name="S-Propane-1-2-diol" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H8O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H8O2</p>
- <p>CHEBI: 29002</p>
- <p>KEGG: C02917</p>
- <p>PUBCHEM: 5840</p>
- </html>
- </notes>
- </species>
- <species id="M_udcdp12Oag_p" name="Undecaprenyl-diphosphate-O-antigene-12x" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C343H570O211P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C343H570O211P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_murein5p4p_p" name="two-linked-disacharide-pentapeptide-and-tetrapeptide-murein-units-uncrosslinked-middle-of-chain" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C77H119N15O41">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C77H119N15O41</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_trnaarg_c" name="tRNA-Arg" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="R">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: R</p>
- <p>CHEBI: 29171</p>
- <p>KEGG: C01636</p>
- <p>PUBCHEM: 4785</p>
- </html>
- </notes>
- </species>
- <species id="M_4pasp_c" name="4-Phospho-L-aspartate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H6NO7P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H6NO7P</p>
- <p>CHEBI: 15836</p>
- <p>KEGG: C03082</p>
- <p>PUBCHEM: 5980</p>
- </html>
- </notes>
- </species>
- <species id="M_LalaDgluMdapDala_c" name="L-alanine-D-glutamate-meso-2-6-diaminoheptanedioate-D-alanine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H30N5O9">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C18H30N5O9</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_LalaDgluMdapDala_e" name="L-alanine-D-glutamate-meso-2-6-diaminoheptanedioate-D-alanine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H30N5O9">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C18H30N5O9</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_csn_p" name="Cytosine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C4H5N3O">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H5N3O</p>
- <p>CHEBI: 16040</p>
- <p>KEGG: C00380</p>
- <p>PUBCHEM: 3670</p>
- </html>
- </notes>
- </species>
- <species id="M_5dglcn_p" name="5-Dehydro-D-gluconate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O7">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H9O7</p>
- <p>CHEBI: 17426</p>
- <p>KEGG: C01062</p>
- <p>PUBCHEM: 4301</p>
- </html>
- </notes>
- </species>
- <species id="M_udcdp15Oag_p" name="Undecaprenyl-diphosphate-O-antigene-15x" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C415H690O262P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C415H690O262P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_gam1p_c" name="D-Glucosamine-1-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H13NO8P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H13NO8P</p>
- <p>CHEBI: 27625</p>
- <p>KEGG: C06156</p>
- <p>PUBCHEM: 8412</p>
- </html>
- </notes>
- </species>
- <species id="M_csn_c" name="Cytosine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C4H5N3O">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H5N3O</p>
- <p>CHEBI: 16040</p>
- <p>KEGG: C00380</p>
- <p>PUBCHEM: 3670</p>
- </html>
- </notes>
- </species>
- <species id="M_csn_e" name="Cytosine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C4H5N3O">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H5N3O</p>
- <p>CHEBI: 16040</p>
- <p>KEGG: C00380</p>
- <p>PUBCHEM: 3670</p>
- </html>
- </notes>
- </species>
- <species id="M_gal1p_p" name="alpha-D-Galactose-1-phosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H11O9P</p>
- <p>CHEBI: 17973</p>
- <p>KEGG: C00446</p>
- <p>PUBCHEM: 3734</p>
- </html>
- </notes>
- </species>
- <species id="M_dtbt_c" name="Dethiobiotin" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H17N2O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H17N2O3</p>
- <p>CHEBI: 16691</p>
- <p>KEGG: C01909</p>
- <p>PUBCHEM: 5017</p>
- </html>
- </notes>
- </species>
- <species id="M_3mob_c" name="3-Methyl-2-oxobutanoate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H7O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H7O3</p>
- <p>CHEBI: 11851 16530</p>
- <p>KEGG: C00141</p>
- <p>PUBCHEM: 3441</p>
- </html>
- </notes>
- </species>
- <species id="M_gal1p_e" name="alpha-D-Galactose-1-phosphate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H11O9P</p>
- <p>CHEBI: 17973</p>
- <p>KEGG: C00446</p>
- <p>PUBCHEM: 3734</p>
- </html>
- </notes>
- </species>
- <species id="M_25drapp_c" name="2-5-Diamino-6-ribosylamino-4-3H-pyrimidinone-5-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H14N5O8P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H14N5O8P</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_gal1p_c" name="alpha-D-Galactose-1-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H11O9P</p>
- <p>CHEBI: 17973</p>
- <p>KEGG: C00446</p>
- <p>PUBCHEM: 3734</p>
- </html>
- </notes>
- </species>
- <species id="M_ump_c" name="UMP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H11N2O9P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H11N2O9P</p>
- <p>CHEBI: 16695</p>
- <p>KEGG: C00105</p>
- <p>PUBCHEM: 3405</p>
- </html>
- </notes>
- </species>
- <species id="M_1agpg160_p" name="1-Acyl-sn-glycero-3-phosphoglycerol-n-C160" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H44O9P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C22H44O9P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_xdp_c" name="XDP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H11N4O12P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H11N4O12P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C01337</p>
- <p>PUBCHEM: 4545</p>
- </html>
- </notes>
- </species>
- <species id="M_trnagly_c" name="tRNA-Gly" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="R">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: R</p>
- <p>CHEBI: 29176</p>
- <p>KEGG: C01642</p>
- <p>PUBCHEM: 4791</p>
- </html>
- </notes>
- </species>
- <species id="M_xan_e" name="Xanthine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H4N4O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H4N4O2</p>
- <p>CHEBI: 17712</p>
- <p>KEGG: C00385</p>
- <p>PUBCHEM: 3675</p>
- </html>
- </notes>
- </species>
- <species id="M_4h2kpi_c" name="4-Hydroxy-2-ketopimelate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C7H8O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C7H8O6</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C05601</p>
- <p>PUBCHEM: 7924</p>
- </html>
- </notes>
- </species>
- <species id="M_xan_c" name="Xanthine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H4N4O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H4N4O2</p>
- <p>CHEBI: 17712</p>
- <p>KEGG: C00385</p>
- <p>PUBCHEM: 3675</p>
- </html>
- </notes>
- </species>
- <species id="M_pheme_p" name="Protoheme" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C34H30FeN4O4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C34H30FeN4O4</p>
- <p>CHEBI: 17627</p>
- <p>KEGG: C00032</p>
- <p>PUBCHEM: 3334</p>
- </html>
- </notes>
- </species>
- <species id="M_salchsx_p" name="Salmochelin-SX" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H20N1O11">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C16H20N1O11</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_6hmhpt_c" name="6-hydroxymethyl-dihydropterin" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C7H9N5O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C7H9N5O2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_xan_p" name="Xanthine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H4N4O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H4N4O2</p>
- <p>CHEBI: 17712</p>
- <p>KEGG: C00385</p>
- <p>PUBCHEM: 3675</p>
- </html>
- </notes>
- </species>
- <species id="M_acmum6p_c" name="N-acetylmuramate-6-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C11H17NO11P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C11H17NO11P</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_iasp_c" name="Iminoaspartate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H3NO4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H3NO4</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C05840</p>
- <p>PUBCHEM: 8133</p>
- </html>
- </notes>
- </species>
- <species id="M_didp_c" name="dIDP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H11N4O10P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H11N4O10P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C01344</p>
- <p>PUBCHEM: 4549</p>
- </html>
- </notes>
- </species>
- <species id="M_2agpg161_c" name="2-Acyl-sn-glycero-3-phosphoglycerol-n-C161" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H42O9P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C22H42O9P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_hxan_e" name="Hypoxanthine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H4N4O">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H4N4O</p>
- <p>CHEBI: 17368</p>
- <p>KEGG: C00262</p>
- <p>PUBCHEM: 3560</p>
- </html>
- </notes>
- </species>
- <species id="M_hxan_c" name="Hypoxanthine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H4N4O">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H4N4O</p>
- <p>CHEBI: 17368</p>
- <p>KEGG: C00262</p>
- <p>PUBCHEM: 3560</p>
- </html>
- </notes>
- </species>
- <species id="M_salchs4_p" name="Salmochelin-S4" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C42H47N3O25">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C42H47N3O25</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_2agpg161_p" name="2-Acyl-sn-glycero-3-phosphoglycerol-n-C161" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H42O9P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C22H42O9P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_hxan_p" name="Hypoxanthine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H4N4O">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H4N4O</p>
- <p>CHEBI: 17368</p>
- <p>KEGG: C00262</p>
- <p>PUBCHEM: 3560</p>
- </html>
- </notes>
- </species>
- <species id="M_ppa_p" name="Propionate-n-C30" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H5O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H5O2</p>
- <p>CHEBI: 30768</p>
- <p>KEGG: C00163</p>
- <p>PUBCHEM: 3463</p>
- </html>
- </notes>
- </species>
- <species id="M_spmd_c" name="Spermidine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="3" fbc:chemicalFormula="C7H22N3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C7H22N3</p>
- <p>CHEBI: 16610</p>
- <p>KEGG: C00315</p>
- <p>PUBCHEM: 3609</p>
- </html>
- </notes>
- </species>
- <species id="M_spmd_e" name="Spermidine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="3" fbc:chemicalFormula="C7H22N3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C7H22N3</p>
- <p>CHEBI: 16610</p>
- <p>KEGG: C00315</p>
- <p>PUBCHEM: 3609</p>
- </html>
- </notes>
- </species>
- <species id="M_murein3px3p_p" name="two-disacharide-linked-murein-units-tripeptide-crosslinked-tripeptide-A2pm-A2pm--middle-of-chain" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C68H102N12O37">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C68H102N12O37</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_spmd_p" name="Spermidine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="3" fbc:chemicalFormula="C7H22N3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C7H22N3</p>
- <p>CHEBI: 16610</p>
- <p>KEGG: C00315</p>
- <p>PUBCHEM: 3609</p>
- </html>
- </notes>
- </species>
- <species id="M_ppa_c" name="Propionate-n-C30" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H5O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H5O2</p>
- <p>CHEBI: 30768</p>
- <p>KEGG: C00163</p>
- <p>PUBCHEM: 3463</p>
- </html>
- </notes>
- </species>
- <species id="M_ppa_e" name="Propionate-n-C30" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H5O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H5O2</p>
- <p>CHEBI: 30768</p>
- <p>KEGG: C00163</p>
- <p>PUBCHEM: 3463</p>
- </html>
- </notes>
- </species>
- <species id="M_dsbgrd_p" name="periplasmic-disulfide-isomerasethiol-disulphide-oxidase-reduced" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="XH2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: XH2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_hexACP_c" name="Hexanoyl-ACP-n-C60ACP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H31N2O8PRS">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C17H31N2O8PRS</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C05749</p>
- <p>PUBCHEM: 8044</p>
- </html>
- </notes>
- </species>
- <species id="M_dcmp_c" name="dCMP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H12N3O7P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H12N3O7P</p>
- <p>CHEBI: 15918</p>
- <p>KEGG: C00239</p>
- <p>PUBCHEM: 3538</p>
- </html>
- </notes>
- </species>
- <species id="M_gal__bD_e" name="beta-D-Galactose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H12O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H12O6</p>
- <p>CHEBI: 28260</p>
- <p>KEGG: C01582</p>
- <p>PUBCHEM: 4738</p>
- </html>
- </notes>
- </species>
- <species id="M_dcmp_e" name="dCMP" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H12N3O7P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H12N3O7P</p>
- <p>CHEBI: 15918</p>
- <p>KEGG: C00239</p>
- <p>PUBCHEM: 3538</p>
- </html>
- </notes>
- </species>
- <species id="M_2agpg120_p" name="2-Acyl-sn-glycero-3-phosphoglycerol-n-C120" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H36O9P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C18H36O9P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_dcmp_p" name="dCMP" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H12N3O7P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H12N3O7P</p>
- <p>CHEBI: 15918</p>
- <p>KEGG: C00239</p>
- <p>PUBCHEM: 3538</p>
- </html>
- </notes>
- </species>
- <species id="M_2agpg120_c" name="2-Acyl-sn-glycero-3-phosphoglycerol-n-C120" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H36O9P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C18H36O9P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_fuc__L_c" name="L-Fucose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H12O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H12O5</p>
- <p>CHEBI: 2181</p>
- <p>KEGG: C01019</p>
- <p>PUBCHEM: 4264</p>
- </html>
- </notes>
- </species>
- <species id="M_fuc__L_e" name="L-Fucose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H12O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H12O5</p>
- <p>CHEBI: 2181</p>
- <p>KEGG: C01019</p>
- <p>PUBCHEM: 4264</p>
- </html>
- </notes>
- </species>
- <species id="M_3ocpalm9eACP_c" name="3-oxo-cis-palm-9-eoyl-acyl-carrier-protein" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C27H47N2O9PRS">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C27H47N2O9PRS</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_ppi_c" name="Diphosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="HO7P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: HO7P2</p>
- <p>CHEBI: 18361 29888</p>
- <p>KEGG: C00013</p>
- <p>PUBCHEM: 3315</p>
- </html>
- </notes>
- </species>
- <species id="M_oxam_c" name="Oxamate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H2NO3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C2H2NO3</p>
- <p>CHEBI: 18058</p>
- <p>KEGG: C01444</p>
- <p>PUBCHEM: 4622</p>
- </html>
- </notes>
- </species>
- <species id="M_malACP_c" name="Malonyl-acyl-carrier-protein" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C14H22N2O10PRS">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C14H22N2O10PRS</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C01209</p>
- <p>PUBCHEM: 4431</p>
- </html>
- </notes>
- </species>
- <species id="M_fuc__L_p" name="L-Fucose" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H12O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H12O5</p>
- <p>CHEBI: 2181</p>
- <p>KEGG: C01019</p>
- <p>PUBCHEM: 4264</p>
- </html>
- </notes>
- </species>
- <species id="M_uaagmda_c" name="Undecaprenyl-diphospho-N-acetylmuramoyl-N-acetylglucosamine-L-ala-D-glu-meso-2-6-diaminopimeloyl-D-ala-D-ala" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C95H152N8O28P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C95H152N8O28P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C05898</p>
- <p>PUBCHEM: 8186</p>
- </html>
- </notes>
- </species>
- <species id="M_5apru_c" name="5-Amino-6-5-phosphoribosylamino-uracil" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H13N4O9P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H13N4O9P</p>
- <p>CHEBI: 18337</p>
- <p>KEGG: C01268</p>
- <p>PUBCHEM: 4487</p>
- </html>
- </notes>
- </species>
- <species id="M_gua_p" name="Guanine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H5N5O">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H5N5O</p>
- <p>CHEBI: 16235</p>
- <p>KEGG: C00242</p>
- <p>PUBCHEM: 3541</p>
- </html>
- </notes>
- </species>
- <species id="M_fprica_c" name="5-Formamido-1-5-phospho-D-ribosyl-imidazole-4-carboxamide" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H13N4O9P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H13N4O9P</p>
- <p>CHEBI: 18381</p>
- <p>KEGG: C04734</p>
- <p>PUBCHEM: 7305</p>
- </html>
- </notes>
- </species>
- <species id="M_glu5sa_c" name="L-Glutamate-5-semialdehyde" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H9NO3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H9NO3</p>
- <p>CHEBI: 17232</p>
- <p>KEGG: C01165</p>
- <p>PUBCHEM: 4392</p>
- </html>
- </notes>
- </species>
- <species id="M_mmet_p" name="S-Methyl-L-methionine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H14NO2S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H14NO2S</p>
- <p>CHEBI: 17728</p>
- <p>KEGG: C03172</p>
- <p>PUBCHEM: 6054</p>
- </html>
- </notes>
- </species>
- <species id="M_gal_c" name="D-Galactose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H12O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H12O6</p>
- <p>CHEBI: 4139</p>
- <p>KEGG: C00124</p>
- <p>PUBCHEM: 3424</p>
- </html>
- </notes>
- </species>
- <species id="M_gal_e" name="D-Galactose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H12O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H12O6</p>
- <p>CHEBI: 4139</p>
- <p>KEGG: C00124</p>
- <p>PUBCHEM: 3424</p>
- </html>
- </notes>
- </species>
- <species id="M_mmet_e" name="S-Methyl-L-methionine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H14NO2S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H14NO2S</p>
- <p>CHEBI: 17728</p>
- <p>KEGG: C03172</p>
- <p>PUBCHEM: 6054</p>
- </html>
- </notes>
- </species>
- <species id="M_gal_p" name="D-Galactose" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H12O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H12O6</p>
- <p>CHEBI: 4139</p>
- <p>KEGG: C00124</p>
- <p>PUBCHEM: 3424</p>
- </html>
- </notes>
- </species>
- <species id="M_gar_c" name="N1-5-Phospho-D-ribosyl-glycinamide" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H14N2O8P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C7H14N2O8P</p>
- <p>CHEBI: 18349</p>
- <p>KEGG: C03838</p>
- <p>PUBCHEM: 6578</p>
- </html>
- </notes>
- </species>
- <species id="M_glcur1p_p" name="D-Glucuronate-1-phosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H8O10P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H8O10P</p>
- <p>CHEBI: 28547</p>
- <p>KEGG: C05385</p>
- <p>PUBCHEM: 7759</p>
- </html>
- </notes>
- </species>
- <species id="M_salchs4fe_e" name="Salmochelin-S4-Fe-III" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="3" fbc:chemicalFormula="C42H47FeN3O25">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C42H47FeN3O25</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_cytd_p" name="Cytidine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C9H13N3O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H13N3O5</p>
- <p>CHEBI: 17562</p>
- <p>KEGG: C00475</p>
- <p>PUBCHEM: 3758</p>
- </html>
- </notes>
- </species>
- <species id="M_salchs4fe_c" name="Salmochelin-S4-Fe-III" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="3" fbc:chemicalFormula="C42H47FeN3O25">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C42H47FeN3O25</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_cytd_c" name="Cytidine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C9H13N3O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H13N3O5</p>
- <p>CHEBI: 17562</p>
- <p>KEGG: C00475</p>
- <p>PUBCHEM: 3758</p>
- </html>
- </notes>
- </species>
- <species id="M_udcpp_p" name="Undecaprenyl-phosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C55H89O4P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C55H89O4P</p>
- <p>CHEBI: 16141</p>
- <p>KEGG: C00348</p>
- <p>PUBCHEM: 3641</p>
- </html>
- </notes>
- </species>
- <species id="M_salchs4fe_p" name="Salmochelin-S4-Fe-III" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="3" fbc:chemicalFormula="C42H47FeN3O25">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C42H47FeN3O25</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_cytd_e" name="Cytidine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C9H13N3O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H13N3O5</p>
- <p>CHEBI: 17562</p>
- <p>KEGG: C00475</p>
- <p>PUBCHEM: 3758</p>
- </html>
- </notes>
- </species>
- <species id="M_2tpr3dpcoa_c" name="2--5--triphosphoribosyl-3-dephospho-CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C26H40N7O26P5S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C26H40N7O26P5S</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_pg180_c" name="Phosphatidylglycerol-dioctadecanoyl-n-C180" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C42H82O10P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C42H82O10P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C00344</p>
- <p>PUBCHEM: 3637</p>
- </html>
- </notes>
- </species>
- <species id="M_clpn120_p" name="cardiolipin-tetradodecanoyl-n-C120" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C57H108O17P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C57H108O17P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C05980</p>
- <p>PUBCHEM: 8259</p>
- </html>
- </notes>
- </species>
- <species id="M_feroxEfe_p" name="Ferrioxamine-E-fe" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C27H45FeN6O9">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C27H45FeN6O9</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 167864</p>
- </html>
- </notes>
- </species>
- <species id="M_gua_c" name="Guanine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H5N5O">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H5N5O</p>
- <p>CHEBI: 16235</p>
- <p>KEGG: C00242</p>
- <p>PUBCHEM: 3541</p>
- </html>
- </notes>
- </species>
- <species id="M_dsbaox_p" name="periplasmic-protein-disulfide-isomerase-I-oxidized" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="X">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: X</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_feroxEfe_c" name="Ferrioxamine-E-fe" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C27H45FeN6O9">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C27H45FeN6O9</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 167864</p>
- </html>
- </notes>
- </species>
- <species id="M_gua_e" name="Guanine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H5N5O">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H5N5O</p>
- <p>CHEBI: 16235</p>
- <p>KEGG: C00242</p>
- <p>PUBCHEM: 3541</p>
- </html>
- </notes>
- </species>
- <species id="M_feroxEfe_e" name="Ferrioxamine-E-fe" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C27H45FeN6O9">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C27H45FeN6O9</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 167864</p>
- </html>
- </notes>
- </species>
- <species id="M_eca4colipa_e" name="enterobacterial-common-antigen-x4-core-oligosaccharide-lipid-A" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-15" fbc:chemicalFormula="C272H447N14O160P4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C272H447N14O160P4</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_dtdp4d6dg_c" name="dTDP-4-dehydro-6-deoxy-D-glucose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C16H22N2O15P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C16H22N2O15P2</p>
- <p>CHEBI: 16128</p>
- <p>KEGG: C00687</p>
- <p>PUBCHEM: 3956</p>
- </html>
- </notes>
- </species>
- <species id="M_halipa_e" name="hepta-acylated-KDO-2-lipid-A" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C126H226N2O40P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C126H226N2O40P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_cdpabeq_c" name="CDP-abequose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C15H23N3O14P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C15H23N3O14P2</p>
- <p>CHEBI: 16049</p>
- <p>KEGG: C01788</p>
- <p>PUBCHEM: 4916</p>
- </html>
- </notes>
- </species>
- <species id="M_psd5p_c" name="psd5p_c" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: </p>
- <p>CHEBI: 18116</p>
- <p>KEGG: C01168</p>
- <p>PUBCHEM: 4395</p>
- </html>
- </notes>
- </species>
- <species id="M_eca4colipa_p" name="enterobacterial-common-antigen-x4-core-oligosaccharide-lipid-A" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-15" fbc:chemicalFormula="C272H447N14O160P4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C272H447N14O160P4</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_cpgn__un_c" name="coprogen-unloaded-no-Fe-III-" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H52N6O13">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C35H52N6O13</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_cpgn__un_e" name="coprogen-unloaded-no-Fe-III-" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H52N6O13">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C35H52N6O13</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_trdox_c" name="Oxidized-thioredoxin" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="X">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: X</p>
- <p>CHEBI: 18191</p>
- <p>KEGG: C00343</p>
- <p>PUBCHEM: 3636</p>
- </html>
- </notes>
- </species>
- <species id="M_cpgn__un_p" name="coprogen-unloaded-no-Fe-III-" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H52N6O13">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C35H52N6O13</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_pa140_c" name="1-2-ditetradecanoyl-sn-glycerol-3-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C31H59O8P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C31H59O8P1</p>
- <p>CHEBI: 16337</p>
- <p>KEGG: C00416</p>
- <p>PUBCHEM: 3706</p>
- </html>
- </notes>
- </species>
- <species id="M_1hdecg3p_p" name="1-hexadecanoyl-sn-glycerol-3-phosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C19H37O7P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C19H37O7P1</p>
- <p>CHEBI: 16975</p>
- <p>KEGG: C00681</p>
- <p>PUBCHEM: 3950</p>
- </html>
- </notes>
- </species>
- <species id="M_adpglc_c" name="ADPglucose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C16H23N5O15P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C16H23N5O15P2</p>
- <p>CHEBI: 15751</p>
- <p>KEGG: C00498</p>
- <p>PUBCHEM: 3781</p>
- </html>
- </notes>
- </species>
- <species id="M_acg5sa_c" name="N-Acetyl-L-glutamate-5-semialdehyde" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H10NO4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C7H10NO4</p>
- <p>CHEBI: 16319 29123</p>
- <p>KEGG: C01250</p>
- <p>PUBCHEM: 4470</p>
- </html>
- </notes>
- </species>
- <species id="M_pa140_p" name="1-2-ditetradecanoyl-sn-glycerol-3-phosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C31H59O8P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C31H59O8P1</p>
- <p>CHEBI: 16337</p>
- <p>KEGG: C00416</p>
- <p>PUBCHEM: 3706</p>
- </html>
- </notes>
- </species>
- <species id="M_2me4p_c" name="2-C-methyl-D-erythritol-4-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H11O7P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H11O7P</p>
- <p>CHEBI: 17764</p>
- <p>KEGG: C11434</p>
- <p>PUBCHEM: 13606</p>
- </html>
- </notes>
- </species>
- <species id="M_malt6p_c" name="Maltose-6-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C12H21O14P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C12H21O14P</p>
- <p>CHEBI: 15703</p>
- <p>KEGG: C02995</p>
- <p>PUBCHEM: 5904</p>
- </html>
- </notes>
- </species>
- <species id="M_gthrd_c" name="Reduced-glutathione" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H16N3O6S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H16N3O6S</p>
- <p>CHEBI: 16856</p>
- <p>KEGG: C00051</p>
- <p>PUBCHEM: 3353</p>
- </html>
- </notes>
- </species>
- <species id="M_murein4p4p_p" name="two-linked-disacharide-tetrapeptide-murein-units-uncrosslinked-middle-of-chain" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C74H114N14O40">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C74H114N14O40</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_arbtn__fe3_p" name="Aerobactin" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C22H33FeN4O13">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C22H33FeN4O13</p>
- <p>CHEBI: 18157</p>
- <p>KEGG: C05554</p>
- <p>PUBCHEM: 7887</p>
- </html>
- </notes>
- </species>
- <species id="M_5prdmbz_c" name="N1-5-Phospho-alpha-D-ribosyl-5-6-dimethylbenzimidazole" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C14H17N2O7P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C14H17N2O7P</p>
- <p>CHEBI: 16837</p>
- <p>KEGG: C04778</p>
- <p>PUBCHEM: 7342</p>
- </html>
- </notes>
- </species>
- <species id="M_skm_e" name="Shikimate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H9O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C7H9O5</p>
- <p>CHEBI: 16119</p>
- <p>KEGG: C00493</p>
- <p>PUBCHEM: 3776</p>
- </html>
- </notes>
- </species>
- <species id="M_adn_c" name="Adenosine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C10H13N5O4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H13N5O4</p>
- <p>CHEBI: 16335</p>
- <p>KEGG: C00212</p>
- <p>PUBCHEM: 3512</p>
- </html>
- </notes>
- </species>
- <species id="M_arbtn__fe3_c" name="Aerobactin" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C22H33FeN4O13">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C22H33FeN4O13</p>
- <p>CHEBI: 18157</p>
- <p>KEGG: C05554</p>
- <p>PUBCHEM: 7887</p>
- </html>
- </notes>
- </species>
- <species id="M_arbtn__fe3_e" name="Aerobactin" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C22H33FeN4O13">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C22H33FeN4O13</p>
- <p>CHEBI: 18157</p>
- <p>KEGG: C05554</p>
- <p>PUBCHEM: 7887</p>
- </html>
- </notes>
- </species>
- <species id="M_enter_c" name="Enterochelin" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C30H27N3O15">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C30H27N3O15</p>
- <p>CHEBI: 28855</p>
- <p>KEGG: C05821</p>
- <p>PUBCHEM: 8116</p>
- </html>
- </notes>
- </species>
- <species id="M_entermg_c" name="entermg_c" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: </p>
- <p>CHEBI: NA</p>
- <p>KEGG: NA</p>
- <p>PUBCHEM: NA</p>
- </html>
- </notes>
- </species>
- <species id="M_pnto__R_p" name="R-Pantothenate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H16NO5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H16NO5</p>
- <p>CHEBI: 29032 46905 7916</p>
- <p>KEGG: C00864</p>
- <p>PUBCHEM: 4121</p>
- </html>
- </notes>
- </species>
- <species id="M_feroxE_p" name="Ferrioxamine-E" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C27H48N6O9">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C27H48N6O9</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 167864</p>
- </html>
- </notes>
- </species>
- <species id="M_h_p" name="H" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="H">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: H</p>
- <p>CHEBI: 15378</p>
- <p>KEGG: C00080</p>
- <p>PUBCHEM: 3380</p>
- </html>
- </notes>
- </species>
- <species id="M_ppt_e" name="Phosphonate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="HO3P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: HO3P</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C06701</p>
- <p>PUBCHEM: 8926</p>
- </html>
- </notes>
- </species>
- <species id="M_15dap_p" name="1-5-Diaminopentane" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C5H16N2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H16N2</p>
- <p>CHEBI: 18127</p>
- <p>KEGG: C01672</p>
- <p>PUBCHEM: 4816</p>
- </html>
- </notes>
- </species>
- <species id="M_lcts_e" name="Lactose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C12H22O11">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C12H22O11</p>
- <p>CHEBI: 36219</p>
- <p>KEGG: C00243</p>
- <p>PUBCHEM: 3542</p>
- </html>
- </notes>
- </species>
- <species id="M_h_e" name="H" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="H">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: H</p>
- <p>CHEBI: 15378</p>
- <p>KEGG: C00080</p>
- <p>PUBCHEM: 3380</p>
- </html>
- </notes>
- </species>
- <species id="M_h_c" name="H" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="H">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: H</p>
- <p>CHEBI: 15378</p>
- <p>KEGG: C00080</p>
- <p>PUBCHEM: 3380</p>
- </html>
- </notes>
- </species>
- <species id="M_15dap_c" name="1-5-Diaminopentane" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C5H16N2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H16N2</p>
- <p>CHEBI: 18127</p>
- <p>KEGG: C01672</p>
- <p>PUBCHEM: 4816</p>
- </html>
- </notes>
- </species>
- <species id="M_2amsa_c" name="2-Aminomalonate-semialdehyde" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H5NO3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H5NO3</p>
- <p>CHEBI: 37012</p>
- <p>KEGG: C11822</p>
- <p>PUBCHEM: 13986</p>
- </html>
- </notes>
- </species>
- <species id="M_salchs4_e" name="Salmochelin-S4" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C42H47N3O25">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C42H47N3O25</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_lcts_p" name="Lactose" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C12H22O11">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C12H22O11</p>
- <p>CHEBI: 36219</p>
- <p>KEGG: C00243</p>
- <p>PUBCHEM: 3542</p>
- </html>
- </notes>
- </species>
- <species id="M_ppt_p" name="Phosphonate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="HO3P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: HO3P</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C06701</p>
- <p>PUBCHEM: 8926</p>
- </html>
- </notes>
- </species>
- <species id="M_15dap_e" name="1-5-Diaminopentane" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C5H16N2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H16N2</p>
- <p>CHEBI: 18127</p>
- <p>KEGG: C01672</p>
- <p>PUBCHEM: 4816</p>
- </html>
- </notes>
- </species>
- <species id="M_fe3dcit_e" name="Fe-III-dicitrate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C12H10FeO14">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C12H10FeO14</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C06229</p>
- <p>PUBCHEM: 8472</p>
- </html>
- </notes>
- </species>
- <species id="M_malcoa_c" name="Malonyl-CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C24H33N7O19P3S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C24H33N7O19P3S</p>
- <p>CHEBI: 15531</p>
- <p>KEGG: C00083</p>
- <p>PUBCHEM: 3383</p>
- </html>
- </notes>
- </species>
- <species id="M_fldrd_c" name="flavodoxin-reduced" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="XH2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: XH2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C02745</p>
- <p>PUBCHEM: 5705</p>
- </html>
- </notes>
- </species>
- <species id="M_2ins_c" name="2ins_c" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: </p>
- <p>CHEBI: 17811</p>
- <p>KEGG: C00691</p>
- <p>PUBCHEM: 3959</p>
- </html>
- </notes>
- </species>
- <species id="M_gthox_p" name="Oxidized-glutathione" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H30N6O12S2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C20H30N6O12S2</p>
- <p>CHEBI: 17858</p>
- <p>KEGG: C00127</p>
- <p>PUBCHEM: 3427</p>
- </html>
- </notes>
- </species>
- <species id="M_dtdp4d6dm_c" name="dTDP-4-dehydro-6-deoxy-L-mannose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C16H22N2O15P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C16H22N2O15P2</p>
- <p>CHEBI: 15744</p>
- <p>KEGG: C00688</p>
- <p>PUBCHEM: 3957</p>
- </html>
- </notes>
- </species>
- <species id="M_adp_c" name="ADP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H12N5O10P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H12N5O10P2</p>
- <p>CHEBI: 16761</p>
- <p>KEGG: C00008</p>
- <p>PUBCHEM: 3310</p>
- </html>
- </notes>
- </species>
- <species id="M_gthox_e" name="Oxidized-glutathione" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H30N6O12S2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C20H30N6O12S2</p>
- <p>CHEBI: 17858</p>
- <p>KEGG: C00127</p>
- <p>PUBCHEM: 3427</p>
- </html>
- </notes>
- </species>
- <species id="M_ugmd_c" name="UDP-N-acetylmuramoyl-L-alanyl-D-gamma-glutamyl-meso-2-6-diaminopimelate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H51N7O26P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C35H51N7O26P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C04877</p>
- <p>PUBCHEM: 7429</p>
- </html>
- </notes>
- </species>
- <species id="M_zn2_e" name="Zinc" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Zn">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: Zn</p>
- <p>CHEBI: 29105</p>
- <p>KEGG: C00038</p>
- <p>PUBCHEM: 3340</p>
- </html>
- </notes>
- </species>
- <species id="M_mal__D_c" name="D-Malate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H4O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H4O5</p>
- <p>CHEBI: 30796</p>
- <p>KEGG: C00497</p>
- <p>PUBCHEM: 3780</p>
- </html>
- </notes>
- </species>
- <species id="M_mal__D_e" name="D-Malate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H4O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H4O5</p>
- <p>CHEBI: 30796</p>
- <p>KEGG: C00497</p>
- <p>PUBCHEM: 3780</p>
- </html>
- </notes>
- </species>
- <species id="M_udcpo5_e" name="udcpo5_e" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: </p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_2agpe141_p" name="2-Acyl-sn-glycero-3-phosphoethanolamine-n-C141" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C19H38NO7P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C19H38NO7P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C05973</p>
- <p>PUBCHEM: 8253</p>
- </html>
- </notes>
- </species>
- <species id="M_pheme_e" name="Protoheme" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C34H30FeN4O4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C34H30FeN4O4</p>
- <p>CHEBI: 17627</p>
- <p>KEGG: C00032</p>
- <p>PUBCHEM: 3334</p>
- </html>
- </notes>
- </species>
- <species id="M_tdeACP_c" name="cis-tetradec-7-enoyl-acyl-carrier-protein-n-C141" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C25H45N2O8PRS">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C25H45N2O8PRS</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_udcdp4Oag_p" name="Undecaprenyl-diphosphate-O-antigene-4x" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C151H250O75P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C151H250O75P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_pheme_c" name="Protoheme" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C34H30FeN4O4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C34H30FeN4O4</p>
- <p>CHEBI: 17627</p>
- <p>KEGG: C00032</p>
- <p>PUBCHEM: 3334</p>
- </html>
- </notes>
- </species>
- <species id="M_mal__D_p" name="D-Malate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H4O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H4O5</p>
- <p>CHEBI: 30796</p>
- <p>KEGG: C00497</p>
- <p>PUBCHEM: 3780</p>
- </html>
- </notes>
- </species>
- <species id="M_1agpe120_p" name="1-Acyl-sn-glycero-3-phosphoethanolamine-n-C120" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C17H36NO7P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C17H36NO7P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C04438</p>
- <p>PUBCHEM: 7069</p>
- </html>
- </notes>
- </species>
- <species id="M_2agpe141_c" name="2-Acyl-sn-glycero-3-phosphoethanolamine-n-C141" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C19H38NO7P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C19H38NO7P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C05973</p>
- <p>PUBCHEM: 8253</p>
- </html>
- </notes>
- </species>
- <species id="M_3psme_c" name="5-O-1-Carboxyvinyl-3-phosphoshikimate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H9O10P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H9O10P</p>
- <p>CHEBI: 16257</p>
- <p>KEGG: C01269</p>
- <p>PUBCHEM: 4488</p>
- </html>
- </notes>
- </species>
- <species id="M_codscl5b_c" name="Cobalt-precorrin-5b" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-7" fbc:chemicalFormula="C43H43CoN4O16">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C43H43CoN4O16</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C16243</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_fum_c" name="Fumarate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H2O4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H2O4</p>
- <p>CHEBI: 18012</p>
- <p>KEGG: C00122</p>
- <p>PUBCHEM: 3422</p>
- </html>
- </notes>
- </species>
- <species id="M_adphep__DD_c" name="ADP-D-glycero-D-manno-heptose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C17H25N5O16P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C17H25N5O16P2</p>
- <p>CHEBI: 16693</p>
- <p>KEGG: C06397</p>
- <p>PUBCHEM: 8633</p>
- </html>
- </notes>
- </species>
- <species id="M_fum_e" name="Fumarate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H2O4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H2O4</p>
- <p>CHEBI: 18012</p>
- <p>KEGG: C00122</p>
- <p>PUBCHEM: 3422</p>
- </html>
- </notes>
- </species>
- <species id="M_5caiz_c" name="5-phosphoribosyl-5-carboxyaminoimidazole" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C9H11N3O9P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H11N3O9P</p>
- <p>CHEBI: 28413</p>
- <p>KEGG: C04751</p>
- <p>PUBCHEM: 7321</p>
- </html>
- </notes>
- </species>
- <species id="M_r5p_p" name="alpha-D-Ribose-5-phosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H9O8P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H9O8P</p>
- <p>CHEBI: 17797</p>
- <p>KEGG: C00117</p>
- <p>PUBCHEM: 3417</p>
- </html>
- </notes>
- </species>
- <species id="M_23cgmp_e" name="2-3-Cyclic-GMP" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H11N5O7P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H11N5O7P</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C06194</p>
- <p>PUBCHEM: 8444</p>
- </html>
- </notes>
- </species>
- <species id="M_fum_p" name="Fumarate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H2O4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H2O4</p>
- <p>CHEBI: 18012</p>
- <p>KEGG: C00122</p>
- <p>PUBCHEM: 3422</p>
- </html>
- </notes>
- </species>
- <species id="M_udcdpgalrmn_c" name="Undecaprenyl-diphosphate-galactose-rhamnose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C67H110O16P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C67H110O16P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_23cgmp_p" name="2-3-Cyclic-GMP" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H11N5O7P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H11N5O7P</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C06194</p>
- <p>PUBCHEM: 8444</p>
- </html>
- </notes>
- </species>
- <species id="M_r5p_c" name="alpha-D-Ribose-5-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H9O8P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H9O8P</p>
- <p>CHEBI: 17797</p>
- <p>KEGG: C00117</p>
- <p>PUBCHEM: 3417</p>
- </html>
- </notes>
- </species>
- <species id="M_r5p_e" name="alpha-D-Ribose-5-phosphate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H9O8P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H9O8P</p>
- <p>CHEBI: 17797</p>
- <p>KEGG: C00117</p>
- <p>PUBCHEM: 3417</p>
- </html>
- </notes>
- </species>
- <species id="M_trnalys_c" name="tRNA-Lys" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="R">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: R</p>
- <p>CHEBI: 29185</p>
- <p>KEGG: C01646</p>
- <p>PUBCHEM: 4795</p>
- </html>
- </notes>
- </species>
- <species id="M_pgp160_p" name="Phosphatidylglycerophosphate-dihexadecanoyl-n-C160" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C38H73O13P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C38H73O13P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C03892</p>
- <p>PUBCHEM: 6624</p>
- </html>
- </notes>
- </species>
- <species id="M_enter_p" name="Enterochelin" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C30H27N3O15">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C30H27N3O15</p>
- <p>CHEBI: 28855</p>
- <p>KEGG: C05821</p>
- <p>PUBCHEM: 8116</p>
- </html>
- </notes>
- </species>
- <species id="M_pgp160_c" name="Phosphatidylglycerophosphate-dihexadecanoyl-n-C160" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C38H73O13P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C38H73O13P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C03892</p>
- <p>PUBCHEM: 6624</p>
- </html>
- </notes>
- </species>
- <species id="M_tet_p" name="Tetrathionate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="O6S4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: O6S4</p>
- <p>CHEBI: 15226 16853</p>
- <p>KEGG: C02084</p>
- <p>PUBCHEM: 5169</p>
- </html>
- </notes>
- </species>
- <species id="M_apoACP_c" name="apoprotein-acyl-carrier-protein" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="RHO">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: RHO</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C03688</p>
- <p>PUBCHEM: 6463</p>
- </html>
- </notes>
- </species>
- <species id="M_dmpp_c" name="Dimethylallyl-diphosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C5H9O7P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H9O7P2</p>
- <p>CHEBI: 16057</p>
- <p>KEGG: C00235</p>
- <p>PUBCHEM: 3534</p>
- </html>
- </notes>
- </species>
- <species id="M_enter_e" name="Enterochelin" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C30H27N3O15">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C30H27N3O15</p>
- <p>CHEBI: 28855</p>
- <p>KEGG: C05821</p>
- <p>PUBCHEM: 8116</p>
- </html>
- </notes>
- </species>
- <species id="M_xtp_c" name="XTP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H11N4O15P3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H11N4O15P3</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C00700</p>
- <p>PUBCHEM: 3968</p>
- </html>
- </notes>
- </species>
- <species id="M_ade_c" name="Adenine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H5N5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H5N5</p>
- <p>CHEBI: 16708</p>
- <p>KEGG: C00147</p>
- <p>PUBCHEM: 3447</p>
- </html>
- </notes>
- </species>
- <species id="M_ade_e" name="Adenine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H5N5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H5N5</p>
- <p>CHEBI: 16708</p>
- <p>KEGG: C00147</p>
- <p>PUBCHEM: 3447</p>
- </html>
- </notes>
- </species>
- <species id="M_salchs4_c" name="Salmochelin-S4" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C42H47N3O25">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C42H47N3O25</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_galt_p" name="Galactitol" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H14O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H14O6</p>
- <p>CHEBI: 16813</p>
- <p>KEGG: C01697</p>
- <p>PUBCHEM: 4837</p>
- </html>
- </notes>
- </species>
- <species id="M_cpg160_c" name="cyclopropane-phosphatidylglycerol-dihexadec-9-10-cyclo-anoyl-n-C160-cyclo" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C40H74O10P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C40H74O10P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_ade_p" name="Adenine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H5N5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H5N5</p>
- <p>CHEBI: 16708</p>
- <p>KEGG: C00147</p>
- <p>PUBCHEM: 3447</p>
- </html>
- </notes>
- </species>
- <species id="M_galt_e" name="Galactitol" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H14O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H14O6</p>
- <p>CHEBI: 16813</p>
- <p>KEGG: C01697</p>
- <p>PUBCHEM: 4837</p>
- </html>
- </notes>
- </species>
- <species id="M_odecoa_c" name="Octadecenoyl-CoA-n-C181CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H64N7O17P3S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C39H64N7O17P3S</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C16218</p>
- <p>PUBCHEM: 47205526</p>
- </html>
- </notes>
- </species>
- <species id="M_2odecg3p_p" name="2-octadecanoyl-sn-glycerol-3-phosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H42O7P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C21H42O7P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C03974</p>
- <p>PUBCHEM: 6693</p>
- </html>
- </notes>
- </species>
- <species id="M_4hthr_e" name="4hthr_e" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: </p>
- <p>CHEBI: 0</p>
- <p>KEGG: C06056</p>
- <p>PUBCHEM: 8326</p>
- </html>
- </notes>
- </species>
- <species id="M_app_c" name="R-1-Amino-2-propanol" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H9NO">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H9NO</p>
- <p>CHEBI: 15675</p>
- <p>KEGG: C03194</p>
- <p>PUBCHEM: 6071</p>
- </html>
- </notes>
- </species>
- <species id="M_23dappa_p" name="2-3-diaminopropionate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C3H9N2O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H9N2O2</p>
- <p>CHEBI: 18383</p>
- <p>KEGG: C06393</p>
- <p>PUBCHEM: 8629</p>
- </html>
- </notes>
- </species>
- <species id="M_4hthr_c" name="4-Hydroxy-L-threonine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C4H9NO4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H9NO4</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C06056</p>
- <p>PUBCHEM: 8326</p>
- </html>
- </notes>
- </species>
- <species id="M_ppp9_c" name="Protoporphyrin" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C34H32N4O4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C34H32N4O4</p>
- <p>CHEBI: 15430</p>
- <p>KEGG: C02191</p>
- <p>PUBCHEM: 5261</p>
- </html>
- </notes>
- </species>
- <species id="M_23dappa_e" name="2-3-diaminopropionate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C3H9N2O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H9N2O2</p>
- <p>CHEBI: 18383</p>
- <p>KEGG: C06393</p>
- <p>PUBCHEM: 8629</p>
- </html>
- </notes>
- </species>
- <species id="M_2dh3dgal6p_c" name="2-Dehydro-3-deoxy-D-galactonate-6-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H8O9P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H8O9P</p>
- <p>CHEBI: 17860</p>
- <p>KEGG: C01286</p>
- <p>PUBCHEM: 4505</p>
- </html>
- </notes>
- </species>
- <species id="M_4hthr_p" name="4hthr_p" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: </p>
- <p>CHEBI: 0</p>
- <p>KEGG: C06056</p>
- <p>PUBCHEM: 8326</p>
- </html>
- </notes>
- </species>
- <species id="M_23dappa_c" name="2-3-diaminopropionate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C3H9N2O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H9N2O2</p>
- <p>CHEBI: 18383</p>
- <p>KEGG: C06393</p>
- <p>PUBCHEM: 8629</p>
- </html>
- </notes>
- </species>
- <species id="M_urdglyc_c" name="--Ureidoglycolate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H5N2O4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H5N2O4</p>
- <p>CHEBI: 15412</p>
- <p>KEGG: C00603</p>
- <p>PUBCHEM: 3878</p>
- </html>
- </notes>
- </species>
- <species id="M_ocdca_p" name="octadecanoate-n-C180" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H35O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C18H35O2</p>
- <p>CHEBI: 25629</p>
- <p>KEGG: C01530</p>
- <p>PUBCHEM: 4692</p>
- </html>
- </notes>
- </species>
- <species id="M_ile__L_c" name="L-Isoleucine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H13NO2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H13NO2</p>
- <p>CHEBI: 17191</p>
- <p>KEGG: C00407</p>
- <p>PUBCHEM: 3697</p>
- </html>
- </notes>
- </species>
- <species id="M_chitob_e" name="Chitobiose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C16H28N2O11">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C16H28N2O11</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C01674</p>
- <p>PUBCHEM: 4818</p>
- </html>
- </notes>
- </species>
- <species id="M_cobn_c" name="Cobyrinate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C45H52CoN4O14">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C45H52CoN4O14</p>
- <p>CHEBI: 33907</p>
- <p>KEGG: C05773</p>
- <p>PUBCHEM: 8068</p>
- </html>
- </notes>
- </species>
- <species id="M_uacmam_c" name="UDP-N-acetyl-D-mannosamine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C17H25N3O17P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C17H25N3O17P2</p>
- <p>CHEBI: 16287</p>
- <p>KEGG: C01170</p>
- <p>PUBCHEM: 4397</p>
- </html>
- </notes>
- </species>
- <species id="M_ile__L_e" name="L-Isoleucine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H13NO2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H13NO2</p>
- <p>CHEBI: 17191</p>
- <p>KEGG: C00407</p>
- <p>PUBCHEM: 3697</p>
- </html>
- </notes>
- </species>
- <species id="M_gthrd_p" name="Reduced-glutathione" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H16N3O6S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H16N3O6S</p>
- <p>CHEBI: 16856</p>
- <p>KEGG: C00051</p>
- <p>PUBCHEM: 3353</p>
- </html>
- </notes>
- </species>
- <species id="M_ocdca_e" name="octadecanoate-n-C180" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H35O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C18H35O2</p>
- <p>CHEBI: 25629</p>
- <p>KEGG: C01530</p>
- <p>PUBCHEM: 4692</p>
- </html>
- </notes>
- </species>
- <species id="M_ocdca_c" name="octadecanoate-n-C180" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H35O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C18H35O2</p>
- <p>CHEBI: 25629</p>
- <p>KEGG: C01530</p>
- <p>PUBCHEM: 4692</p>
- </html>
- </notes>
- </species>
- <species id="M_urocan_c" name="Urocanate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H5N2O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H5N2O2</p>
- <p>CHEBI: 30817</p>
- <p>KEGG: C00785</p>
- <p>PUBCHEM: 4043</p>
- </html>
- </notes>
- </species>
- <species id="M_gthrd_e" name="Reduced-glutathione" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H16N3O6S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H16N3O6S</p>
- <p>CHEBI: 16856</p>
- <p>KEGG: C00051</p>
- <p>PUBCHEM: 3353</p>
- </html>
- </notes>
- </species>
- <species id="M_ile__L_p" name="L-Isoleucine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H13NO2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H13NO2</p>
- <p>CHEBI: 17191</p>
- <p>KEGG: C00407</p>
- <p>PUBCHEM: 3697</p>
- </html>
- </notes>
- </species>
- <species id="M_chitob_p" name="chitob_p" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: </p>
- <p>CHEBI: 0</p>
- <p>KEGG: C01674</p>
- <p>PUBCHEM: 4818</p>
- </html>
- </notes>
- </species>
- <species id="M_lac__D_p" name="D-Lactate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H5O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H5O3</p>
- <p>CHEBI: 42111</p>
- <p>KEGG: C00256</p>
- <p>PUBCHEM: 3555</p>
- </html>
- </notes>
- </species>
- <species id="M_codscl8x_c" name="Cobalt-precorrin-8x" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C45H52CoN4O14">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C45H52CoN4O14</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C11545</p>
- <p>PUBCHEM: 13712</p>
- </html>
- </notes>
- </species>
- <species id="M_so2_c" name="sulfur-dioxide" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="O2S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: O2S</p>
- <p>CHEBI: 18422</p>
- <p>KEGG: C09306</p>
- <p>PUBCHEM: 11497</p>
- </html>
- </notes>
- </species>
- <species id="M_cpppg3_c" name="Coproporphyrinogen-III" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C36H40N4O8">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C36H40N4O8</p>
- <p>CHEBI: 15439</p>
- <p>KEGG: C03263</p>
- <p>PUBCHEM: 6127</p>
- </html>
- </notes>
- </species>
- <species id="M_selnp_c" name="Selenophosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="H2O3PSe">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: H2O3PSe</p>
- <p>CHEBI: 16144</p>
- <p>KEGG: C05172</p>
- <p>PUBCHEM: 7583</p>
- </html>
- </notes>
- </species>
- <species id="M_lac__D_e" name="D-Lactate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H5O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H5O3</p>
- <p>CHEBI: 42111</p>
- <p>KEGG: C00256</p>
- <p>PUBCHEM: 3555</p>
- </html>
- </notes>
- </species>
- <species id="M_lac__D_c" name="D-Lactate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H5O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H5O3</p>
- <p>CHEBI: 42111</p>
- <p>KEGG: C00256</p>
- <p>PUBCHEM: 3555</p>
- </html>
- </notes>
- </species>
- <species id="M_so2_p" name="sulfur-dioxide" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="O2S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: O2S</p>
- <p>CHEBI: 18422</p>
- <p>KEGG: C09306</p>
- <p>PUBCHEM: 11497</p>
- </html>
- </notes>
- </species>
- <species id="M_3ophb_c" name="3-Octaprenyl-4-hydroxybenzoate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C47H69O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C47H69O3</p>
- <p>CHEBI: 1617 50116</p>
- <p>KEGG: C05809</p>
- <p>PUBCHEM: 8104</p>
- </html>
- </notes>
- </species>
- <species id="M_anhm3p_c" name="1-6-anhydrous-N-Acetylmuramyl-tripeptide" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C26H39N5O14">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C26H39N5O14</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_guln__L_e" name="guln__L_e" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: </p>
- <p>CHEBI: NA</p>
- <p>KEGG: NA</p>
- <p>PUBCHEM: NA</p>
- </html>
- </notes>
- </species>
- <species id="M_ascb__L_p" name="L-Ascorbate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H8O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H8O6</p>
- <p>CHEBI: 29073 38290</p>
- <p>KEGG: C00072</p>
- <p>PUBCHEM: 3372</p>
- </html>
- </notes>
- </species>
- <species id="M_guln__L_c" name="guln__L_c" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: </p>
- <p>CHEBI: NA</p>
- <p>KEGG: NA</p>
- <p>PUBCHEM: NA</p>
- </html>
- </notes>
- </species>
- <species id="M_phpyr_c" name="Phenylpyruvate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H7O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H7O3</p>
- <p>CHEBI: 30851</p>
- <p>KEGG: C00166</p>
- <p>PUBCHEM: 3466</p>
- </html>
- </notes>
- </species>
- <species id="M_5mthf_c" name="5-Methyltetrahydrofolate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H24N7O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C20H24N7O6</p>
- <p>CHEBI: 15641</p>
- <p>KEGG: C00440</p>
- <p>PUBCHEM: 3729</p>
- </html>
- </notes>
- </species>
- <species id="M_5cm2hmu_c" name="5-Carboxymethyl-2-hydroxymuconate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C8H5O7">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C8H5O7</p>
- <p>CHEBI: 2040</p>
- <p>KEGG: C04186</p>
- <p>PUBCHEM: 6862</p>
- </html>
- </notes>
- </species>
- <species id="M_guln__L_p" name="guln__L_p" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: </p>
- <p>CHEBI: NA</p>
- <p>KEGG: NA</p>
- <p>PUBCHEM: NA</p>
- </html>
- </notes>
- </species>
- <species id="M_ascb__L_e" name="L-Ascorbate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H8O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H8O6</p>
- <p>CHEBI: 29073 38290</p>
- <p>KEGG: C00072</p>
- <p>PUBCHEM: 3372</p>
- </html>
- </notes>
- </species>
- <species id="M_melib_p" name="Melibiose" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C12H22O11">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C12H22O11</p>
- <p>CHEBI: 28053</p>
- <p>KEGG: C05402</p>
- <p>PUBCHEM: 7769</p>
- </html>
- </notes>
- </species>
- <species id="M_ptrc_p" name="Putrescine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C4H14N2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H14N2</p>
- <p>CHEBI: 17148</p>
- <p>KEGG: C00134</p>
- <p>PUBCHEM: 3434</p>
- </html>
- </notes>
- </species>
- <species id="M_mnl1p_c" name="D-Mannitol-1-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H13O9P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H13O9P</p>
- <p>CHEBI: 16298</p>
- <p>KEGG: C00644</p>
- <p>PUBCHEM: 3917</p>
- </html>
- </notes>
- </species>
- <species id="M_ptrc_c" name="Putrescine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C4H14N2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H14N2</p>
- <p>CHEBI: 17148</p>
- <p>KEGG: C00134</p>
- <p>PUBCHEM: 3434</p>
- </html>
- </notes>
- </species>
- <species id="M_melib_c" name="Melibiose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C12H22O11">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C12H22O11</p>
- <p>CHEBI: 28053</p>
- <p>KEGG: C05402</p>
- <p>PUBCHEM: 7769</p>
- </html>
- </notes>
- </species>
- <species id="M_uama_c" name="UDP-N-acetylmuramoyl-L-alanine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C23H33N4O20P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C23H33N4O20P2</p>
- <p>CHEBI: 16932</p>
- <p>KEGG: C01212</p>
- <p>PUBCHEM: 4434</p>
- </html>
- </notes>
- </species>
- <species id="M_ptrc_e" name="Putrescine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C4H14N2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H14N2</p>
- <p>CHEBI: 17148</p>
- <p>KEGG: C00134</p>
- <p>PUBCHEM: 3434</p>
- </html>
- </notes>
- </species>
- <species id="M_glu__L_c" name="L-Glutamate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H8NO4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H8NO4</p>
- <p>CHEBI: 16015</p>
- <p>KEGG: C00025</p>
- <p>PUBCHEM: 3327</p>
- </html>
- </notes>
- </species>
- <species id="M_glu__L_e" name="L-Glutamate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H8NO4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H8NO4</p>
- <p>CHEBI: 16015</p>
- <p>KEGG: C00025</p>
- <p>PUBCHEM: 3327</p>
- </html>
- </notes>
- </species>
- <species id="M_trnatrp_c" name="tRNA-Trp" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="R">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: R</p>
- <p>CHEBI: 29181</p>
- <p>KEGG: C01652</p>
- <p>PUBCHEM: 4801</p>
- </html>
- </notes>
- </species>
- <species id="M_glu__L_p" name="L-Glutamate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H8NO4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H8NO4</p>
- <p>CHEBI: 16015</p>
- <p>KEGG: C00025</p>
- <p>PUBCHEM: 3327</p>
- </html>
- </notes>
- </species>
- <species id="M_tartr__L_c" name="L-tartrate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H4O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H4O6</p>
- <p>CHEBI: 15671 30924</p>
- <p>KEGG: C00898</p>
- <p>PUBCHEM: 4154</p>
- </html>
- </notes>
- </species>
- <species id="M_tartr__L_e" name="L-tartrate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H4O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H4O6</p>
- <p>CHEBI: 15671 30924</p>
- <p>KEGG: C00898</p>
- <p>PUBCHEM: 4154</p>
- </html>
- </notes>
- </species>
- <species id="M_tartr__L_p" name="L-tartrate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H4O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H4O6</p>
- <p>CHEBI: 15671 30924</p>
- <p>KEGG: C00898</p>
- <p>PUBCHEM: 4154</p>
- </html>
- </notes>
- </species>
- <species id="M_pe180_c" name="phosphatidylethanolamine-dioctadecanoyl-n-C180" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C41H82N1O8P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C41H82N1O8P1</p>
- <p>CHEBI: 16038</p>
- <p>KEGG: C00350</p>
- <p>PUBCHEM: 3643</p>
- </html>
- </notes>
- </species>
- <species id="M_13dpg_c" name="3-Phospho-D-glyceroyl-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C3H4O10P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H4O10P2</p>
- <p>CHEBI: 16001</p>
- <p>KEGG: C00236</p>
- <p>PUBCHEM: 3535</p>
- </html>
- </notes>
- </species>
- <species id="M_glu1sa_c" name="L-Glutamate-1-semialdehyde" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H9NO3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H9NO3</p>
- <p>CHEBI: 15757</p>
- <p>KEGG: C03741</p>
- <p>PUBCHEM: 6504</p>
- </html>
- </notes>
- </species>
- <species id="M_thmmp_c" name="Thiamin-monophosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C12H16N4O4PS">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C12H16N4O4PS</p>
- <p>CHEBI: 9533</p>
- <p>KEGG: C01081</p>
- <p>PUBCHEM: 4319</p>
- </html>
- </notes>
- </species>
- <species id="M_ag_e" name="silver" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="Ag">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: Ag</p>
- <p>CHEBI: 9141</p>
- <p>KEGG: C06710</p>
- <p>PUBCHEM: 8935</p>
- </html>
- </notes>
- </species>
- <species id="M_tag6p__D_c" name="D-Tagatose-6-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H11O9P</p>
- <p>CHEBI: 4251</p>
- <p>KEGG: C01097</p>
- <p>PUBCHEM: 4332</p>
- </html>
- </notes>
- </species>
- <species id="M_udcdp19Oag_p" name="Undecaprenyl-diphosphate-O-antigene-19x" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C511H850O330P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C511H850O330P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_cdp_c" name="CDP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C9H12N3O11P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H12N3O11P2</p>
- <p>CHEBI: 17239</p>
- <p>KEGG: C00112</p>
- <p>PUBCHEM: 3412</p>
- </html>
- </notes>
- </species>
- <species id="M_mso3_e" name="methanesulfonate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CH3O3S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: CH3O3S</p>
- <p>CHEBI: 25224</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 49991312</p>
- </html>
- </notes>
- </species>
- <species id="M_pg140_p" name="Phosphatidylglycerol-ditetradecanoyl-n-C140" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C34H66O10P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C34H66O10P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C00344</p>
- <p>PUBCHEM: 3637</p>
- </html>
- </notes>
- </species>
- <species id="M_g3ps_e" name="Glycerophosphoserine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H13NO8P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H13NO8P</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 3081457</p>
- </html>
- </notes>
- </species>
- <species id="M_g3ps_c" name="Glycerophosphoserine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H13NO8P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H13NO8P</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 3081457</p>
- </html>
- </notes>
- </species>
- <species id="M_arg__L_p" name="L-Arginine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H15N4O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H15N4O2</p>
- <p>CHEBI: 16467</p>
- <p>KEGG: C00062</p>
- <p>PUBCHEM: 3362</p>
- </html>
- </notes>
- </species>
- <species id="M_tsul_p" name="Thiosulfate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="O3S2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: O3S2</p>
- <p>CHEBI: 16094</p>
- <p>KEGG: C00320</p>
- <p>PUBCHEM: 3614</p>
- </html>
- </notes>
- </species>
- <species id="M_pg140_c" name="Phosphatidylglycerol-ditetradecanoyl-n-C140" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C34H66O10P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C34H66O10P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C00344</p>
- <p>PUBCHEM: 3637</p>
- </html>
- </notes>
- </species>
- <species id="M_arg__L_e" name="L-Arginine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H15N4O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H15N4O2</p>
- <p>CHEBI: 16467</p>
- <p>KEGG: C00062</p>
- <p>PUBCHEM: 3362</p>
- </html>
- </notes>
- </species>
- <species id="M_pep_p" name="Phosphoenolpyruvate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C3H2O6P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H2O6P</p>
- <p>CHEBI: 18021 44897</p>
- <p>KEGG: C00074</p>
- <p>PUBCHEM: 3374</p>
- </html>
- </notes>
- </species>
- <species id="M_arg__L_c" name="L-Arginine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H15N4O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H15N4O2</p>
- <p>CHEBI: 16467</p>
- <p>KEGG: C00062</p>
- <p>PUBCHEM: 3362</p>
- </html>
- </notes>
- </species>
- <species id="M_trdrd_c" name="Reduced-thioredoxin" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="XH2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: XH2</p>
- <p>CHEBI: 15967</p>
- <p>KEGG: C00342</p>
- <p>PUBCHEM: 3635</p>
- </html>
- </notes>
- </species>
- <species id="M_g3ps_p" name="Glycerophosphoserine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H13NO8P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H13NO8P</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 3081457</p>
- </html>
- </notes>
- </species>
- <species id="M_tsul_e" name="Thiosulfate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="O3S2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: O3S2</p>
- <p>CHEBI: 16094</p>
- <p>KEGG: C00320</p>
- <p>PUBCHEM: 3614</p>
- </html>
- </notes>
- </species>
- <species id="M_tsul_c" name="Thiosulfate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="O3S2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: O3S2</p>
- <p>CHEBI: 16094</p>
- <p>KEGG: C00320</p>
- <p>PUBCHEM: 3614</p>
- </html>
- </notes>
- </species>
- <species id="M_dudp_c" name="dUDP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C9H11N2O11P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H11N2O11P2</p>
- <p>CHEBI: 28850</p>
- <p>KEGG: C01346</p>
- <p>PUBCHEM: 4551</p>
- </html>
- </notes>
- </species>
- <species id="M_msa_c" name="msa_c" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: </p>
- <p>CHEBI: 17960</p>
- <p>KEGG: C00222</p>
- <p>PUBCHEM: 3522</p>
- </html>
- </notes>
- </species>
- <species id="M_glcr_e" name="D-Glucarate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H8O8">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H8O8</p>
- <p>CHEBI: 16002</p>
- <p>KEGG: C00818</p>
- <p>PUBCHEM: 4076</p>
- </html>
- </notes>
- </species>
- <species id="M_pydxn_c" name="Pyridoxine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C8H11NO3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C8H11NO3</p>
- <p>CHEBI: 16709</p>
- <p>KEGG: C00314</p>
- <p>PUBCHEM: 3608</p>
- </html>
- </notes>
- </species>
- <species id="M_12dgr2_ST_p" name="12dgr2_ST_p" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: </p>
- <p>CHEBI: NA</p>
- <p>KEGG: NA</p>
- <p>PUBCHEM: NA</p>
- </html>
- </notes>
- </species>
- <species id="M_cit_e" name="Citrate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H5O7">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H5O7</p>
- <p>CHEBI: 30769</p>
- <p>KEGG: C00158</p>
- <p>PUBCHEM: 3458</p>
- </html>
- </notes>
- </species>
- <species id="M_cdpdodecg_c" name="CDP-1-2-dioctadecanoylglycerol" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C48H87N3O15P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C48H87N3O15P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C00269</p>
- <p>PUBCHEM: 3567</p>
- </html>
- </notes>
- </species>
- <species id="M_cit_c" name="Citrate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H5O7">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H5O7</p>
- <p>CHEBI: 30769</p>
- <p>KEGG: C00158</p>
- <p>PUBCHEM: 3458</p>
- </html>
- </notes>
- </species>
- <species id="M_glcr_p" name="D-Glucarate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H8O8">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H8O8</p>
- <p>CHEBI: 16002</p>
- <p>KEGG: C00818</p>
- <p>PUBCHEM: 4076</p>
- </html>
- </notes>
- </species>
- <species id="M_cit_p" name="Citrate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H5O7">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H5O7</p>
- <p>CHEBI: 30769</p>
- <p>KEGG: C00158</p>
- <p>PUBCHEM: 3458</p>
- </html>
- </notes>
- </species>
- <species id="M_fdp_c" name="D-Fructose-1-6-bisphosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C6H10O12P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H10O12P2</p>
- <p>CHEBI: 16905</p>
- <p>KEGG: C00354</p>
- <p>PUBCHEM: 3647</p>
- </html>
- </notes>
- </species>
- <species id="M_isetac_e" name="Isethionic-acid" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H5O4S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C2H5O4S</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C05123</p>
- <p>PUBCHEM: 7545</p>
- </html>
- </notes>
- </species>
- <species id="M_pg181_p" name="Phosphatidylglycerol-dioctadec-11-enoyl-n-C181" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C42H78O10P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C42H78O10P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C00344</p>
- <p>PUBCHEM: 3637</p>
- </html>
- </notes>
- </species>
- <species id="M_aacoa_c" name="Acetoacetyl-CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C25H36N7O18P3S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C25H36N7O18P3S</p>
- <p>CHEBI: 15345</p>
- <p>KEGG: C00332</p>
- <p>PUBCHEM: 3626</p>
- </html>
- </notes>
- </species>
- <species id="M_isetac_p" name="Isethionic-acid" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H5O4S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C2H5O4S</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C05123</p>
- <p>PUBCHEM: 7545</p>
- </html>
- </notes>
- </species>
- <species id="M_pg181_c" name="Phosphatidylglycerol-dioctadec-11-enoyl-n-C181" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C42H78O10P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C42H78O10P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C00344</p>
- <p>PUBCHEM: 3637</p>
- </html>
- </notes>
- </species>
- <species id="M_t3c11vaceACP_c" name="trans-3-cis-11-vacceoyl-acyl-carrier-protein" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C29H51N2O8PRS">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C29H51N2O8PRS</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_1odec11eg3p_p" name="1-octadec-11-enoyl-sn-glycerol-3-phosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H39O7P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C21H39O7P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_4ampm_c" name="4-Amino-2-methyl-5-phosphomethylpyrimidine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H8N3O4P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H8N3O4P</p>
- <p>CHEBI: 18032</p>
- <p>KEGG: C04556</p>
- <p>PUBCHEM: 7161</p>
- </html>
- </notes>
- </species>
- <species id="M_1odec11eg3p_c" name="1-octadec-11-enoyl-sn-glycerol-3-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H39O7P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C21H39O7P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_cpe180_c" name="cyclopropane-phosphatidylethanolamine-dioctadec-11-12-cyclo-anoyl-n-C180-cyclo" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C43H82N1O8P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C43H82N1O8P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_4adcho_c" name="4-amino-4-deoxychorismate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H10NO5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H10NO5</p>
- <p>CHEBI: 18198 35181</p>
- <p>KEGG: C11355</p>
- <p>PUBCHEM: 13530</p>
- </html>
- </notes>
- </species>
- <species id="M_3hpalmACP_c" name="R-3-hydroxypalmitoyl-acyl-carrier-protein" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C27H51N2O9PRS">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C27H51N2O9PRS</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C04633</p>
- <p>PUBCHEM: 7222</p>
- </html>
- </notes>
- </species>
- <species id="M_hdcea_p" name="Hexadecenoate-n-C161" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H29O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C16H29O2</p>
- <p>CHEBI: 15756</p>
- <p>KEGG: C00249</p>
- <p>PUBCHEM: 3548</p>
- </html>
- </notes>
- </species>
- <species id="M_pgp180_c" name="Phosphatidylglycerophosphate-dioctadecanoyl-n-C180" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C42H81O13P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C42H81O13P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C03892</p>
- <p>PUBCHEM: 6624</p>
- </html>
- </notes>
- </species>
- <species id="M_galur_p" name="D-Galacturonate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O7">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H9O7</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C00333</p>
- <p>PUBCHEM: 3627</p>
- </html>
- </notes>
- </species>
- <species id="M_hdcea_c" name="Hexadecenoate-n-C161" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H29O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C16H29O2</p>
- <p>CHEBI: 15756</p>
- <p>KEGG: C00249</p>
- <p>PUBCHEM: 3548</p>
- </html>
- </notes>
- </species>
- <species id="M_pphn_c" name="Prephenate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H8O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H8O6</p>
- <p>CHEBI: 16666</p>
- <p>KEGG: C00254</p>
- <p>PUBCHEM: 3553</p>
- </html>
- </notes>
- </species>
- <species id="M_hdcea_e" name="Hexadecenoate-n-C161" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H29O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C16H29O2</p>
- <p>CHEBI: 15756</p>
- <p>KEGG: C00249</p>
- <p>PUBCHEM: 3548</p>
- </html>
- </notes>
- </species>
- <species id="M_galur_e" name="D-Galacturonate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O7">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H9O7</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C00333</p>
- <p>PUBCHEM: 3627</p>
- </html>
- </notes>
- </species>
- <species id="M_galur_c" name="D-Galacturonate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O7">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H9O7</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C00333</p>
- <p>PUBCHEM: 3627</p>
- </html>
- </notes>
- </species>
- <species id="M_pgp180_p" name="Phosphatidylglycerophosphate-dioctadecanoyl-n-C180" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C42H81O13P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C42H81O13P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C03892</p>
- <p>PUBCHEM: 6624</p>
- </html>
- </notes>
- </species>
- <species id="M_acon__C_c" name="cis-Aconitate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H3O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H3O6</p>
- <p>CHEBI: 32805</p>
- <p>KEGG: C00417</p>
- <p>PUBCHEM: 3707</p>
- </html>
- </notes>
- </species>
- <species id="M_lyx__L_c" name="L-Lyxose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H10O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H10O5</p>
- <p>CHEBI: 28480</p>
- <p>KEGG: C01508</p>
- <p>PUBCHEM: 4676</p>
- </html>
- </notes>
- </species>
- <species id="M_12dgr181_c" name="1-2-Diacyl-sn-glycerol-dioctadec-11-enoyl-n-C181" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C39H72O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C39H72O5</p>
- <p>CHEBI: 17815</p>
- <p>KEGG: C00641</p>
- <p>PUBCHEM: 3914</p>
- </html>
- </notes>
- </species>
- <species id="M_acon__C_p" name="cis-Aconitate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H3O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H3O6</p>
- <p>CHEBI: 32805</p>
- <p>KEGG: C00417</p>
- <p>PUBCHEM: 3707</p>
- </html>
- </notes>
- </species>
- <species id="M_rml1p_c" name="L-Rhamnulose-1-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O8P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H11O8P</p>
- <p>CHEBI: 17892</p>
- <p>KEGG: C01131</p>
- <p>PUBCHEM: 4362</p>
- </html>
- </notes>
- </species>
- <species id="M_lyx__L_p" name="L-Lyxose" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H10O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H10O5</p>
- <p>CHEBI: 28480</p>
- <p>KEGG: C01508</p>
- <p>PUBCHEM: 4676</p>
- </html>
- </notes>
- </species>
- <species id="M_12dgr181_p" name="1-2-Diacyl-sn-glycerol-dioctadec-11-enoyl-n-C181" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C39H72O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C39H72O5</p>
- <p>CHEBI: 17815</p>
- <p>KEGG: C00641</p>
- <p>PUBCHEM: 3914</p>
- </html>
- </notes>
- </species>
- <species id="M_psclys_e" name="psicoselysine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C12H25N2O7">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C12H25N2O7</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_acon__T_c" name="trans-Aconitate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H3O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H3O6</p>
- <p>CHEBI: 32806</p>
- <p>KEGG: C02341</p>
- <p>PUBCHEM: 5390</p>
- </html>
- </notes>
- </species>
- <species id="M_urate_c" name="Urate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H4N4O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H4N4O3</p>
- <p>CHEBI: 17775</p>
- <p>KEGG: C00366</p>
- <p>PUBCHEM: 3657</p>
- </html>
- </notes>
- </species>
- <species id="M_psclys_p" name="psicoselysine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C12H25N2O7">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C12H25N2O7</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_gdpofuc_c" name="GDP-4-oxo-L-fucose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C16H21N5O15P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C16H21N5O15P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 16760491</p>
- </html>
- </notes>
- </species>
- <species id="M_g3pi_p" name="sn-Glycero-3-phospho-1-inositol" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H18O11P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H18O11P</p>
- <p>CHEBI: 18321</p>
- <p>KEGG: C01225</p>
- <p>PUBCHEM: 4447</p>
- </html>
- </notes>
- </species>
- <species id="M_g3pi_c" name="sn-Glycero-3-phospho-1-inositol" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H18O11P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H18O11P</p>
- <p>CHEBI: 18321</p>
- <p>KEGG: C01225</p>
- <p>PUBCHEM: 4447</p>
- </html>
- </notes>
- </species>
- <species id="M_g3pi_e" name="sn-Glycero-3-phospho-1-inositol" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H18O11P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H18O11P</p>
- <p>CHEBI: 18321</p>
- <p>KEGG: C01225</p>
- <p>PUBCHEM: 4447</p>
- </html>
- </notes>
- </species>
- <species id="M_udcdp18Oag_p" name="Undecaprenyl-diphosphate-O-antigene-18x" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C487H810O313P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C487H810O313P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_OA_ST_p" name="OA_ST_p" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: </p>
- <p>CHEBI: NA</p>
- <p>KEGG: NA</p>
- <p>PUBCHEM: NA</p>
- </html>
- </notes>
- </species>
- <species id="M_slcys_c" name="slcys_c" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: </p>
- <p>CHEBI: 0</p>
- <p>KEGG: C05824</p>
- <p>PUBCHEM: 8119</p>
- </html>
- </notes>
- </species>
- <species id="M_apg141_c" name="acyl-phosphatidylglycerol-n-C141" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C48H86O11P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C48H86O11P</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_etoh_e" name="Ethanol" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C2H6O">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C2H6O</p>
- <p>CHEBI: 16236</p>
- <p>KEGG: C00469</p>
- <p>PUBCHEM: 3752</p>
- </html>
- </notes>
- </species>
- <species id="M_etoh_c" name="Ethanol" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C2H6O">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C2H6O</p>
- <p>CHEBI: 16236</p>
- <p>KEGG: C00469</p>
- <p>PUBCHEM: 3752</p>
- </html>
- </notes>
- </species>
- <species id="M_pydx_p" name="pydx_p" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: </p>
- <p>CHEBI: 17310</p>
- <p>KEGG: C00250</p>
- <p>PUBCHEM: 3549</p>
- </html>
- </notes>
- </species>
- <species id="M_pydx_e" name="Pyridoxal" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C8H9NO3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C8H9NO3</p>
- <p>CHEBI: 17310</p>
- <p>KEGG: C00250</p>
- <p>PUBCHEM: 3549</p>
- </html>
- </notes>
- </species>
- <species id="M_pydx_c" name="Pyridoxal" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C8H9NO3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C8H9NO3</p>
- <p>CHEBI: 17310</p>
- <p>KEGG: C00250</p>
- <p>PUBCHEM: 3549</p>
- </html>
- </notes>
- </species>
- <species id="M_glcur_e" name="D-Glucuronate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O7">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H9O7</p>
- <p>CHEBI: 4178 47952</p>
- <p>KEGG: C00191</p>
- <p>PUBCHEM: 3491</p>
- </html>
- </notes>
- </species>
- <species id="M_glcur_c" name="D-Glucuronate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O7">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H9O7</p>
- <p>CHEBI: 4178 47952</p>
- <p>KEGG: C00191</p>
- <p>PUBCHEM: 3491</p>
- </html>
- </notes>
- </species>
- <species id="M_hisp_c" name="L-Histidinol-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11N3O4P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H11N3O4P</p>
- <p>CHEBI: 16996</p>
- <p>KEGG: C01100</p>
- <p>PUBCHEM: 4334</p>
- </html>
- </notes>
- </species>
- <species id="M_acg5p_c" name="N-Acetyl-L-glutamyl-5-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C7H9NO8P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C7H9NO8P</p>
- <p>CHEBI: 16878</p>
- <p>KEGG: C04133</p>
- <p>PUBCHEM: 6819</p>
- </html>
- </notes>
- </species>
- <species id="M_tag1p__D_c" name="D-Tagatose-1-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H11O9P</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_sectrna_c" name="L-Selenocysteinyl-tRNA-Sec" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C3H6NOSeR">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H6NOSeR</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_glcur_p" name="D-Glucuronate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O7">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H9O7</p>
- <p>CHEBI: 4178 47952</p>
- <p>KEGG: C00191</p>
- <p>PUBCHEM: 3491</p>
- </html>
- </notes>
- </species>
- <species id="M_amet_c" name="S-Adenosyl-L-methionine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C15H23N6O5S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C15H23N6O5S</p>
- <p>CHEBI: 15414</p>
- <p>KEGG: C00019</p>
- <p>PUBCHEM: 3321</p>
- </html>
- </notes>
- </species>
- <species id="M_acglc__D_c" name="6-Acetyl-D-glucose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C8H14O7">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C8H14O7</p>
- <p>CHEBI: 17901</p>
- <p>KEGG: C02655</p>
- <p>PUBCHEM: 5628</p>
- </html>
- </notes>
- </species>
- <species id="M_mlthf_c" name="5-10-Methylenetetrahydrofolate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H21N7O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C20H21N7O6</p>
- <p>CHEBI: 1989</p>
- <p>KEGG: C00143</p>
- <p>PUBCHEM: 3443</p>
- </html>
- </notes>
- </species>
- <species id="M_u23ga_c" name="UDP-2-3-bis-3-hydroxytetradecanoyl-glucosamine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C43H75N3O20P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C43H75N3O20P2</p>
- <p>CHEBI: 17787</p>
- <p>KEGG: C04652</p>
- <p>PUBCHEM: 7239</p>
- </html>
- </notes>
- </species>
- <species id="M_2oh3d_c" name="2oh3d_c" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: </p>
- <p>CHEBI: 1254</p>
- <p>KEGG: C03063</p>
- <p>PUBCHEM: 5963</p>
- </html>
- </notes>
- </species>
- <species id="M_glyc__R_p" name="R-Glycerate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H5O4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H5O4</p>
- <p>CHEBI: 32398</p>
- <p>KEGG: C00258</p>
- <p>PUBCHEM: 3557</p>
- </html>
- </notes>
- </species>
- <species id="M_glyc__R_e" name="R-Glycerate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H5O4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H5O4</p>
- <p>CHEBI: 32398</p>
- <p>KEGG: C00258</p>
- <p>PUBCHEM: 3557</p>
- </html>
- </notes>
- </species>
- <species id="M_glyc__R_c" name="R-Glycerate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H5O4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H5O4</p>
- <p>CHEBI: 32398</p>
- <p>KEGG: C00258</p>
- <p>PUBCHEM: 3557</p>
- </html>
- </notes>
- </species>
- <species id="M_clpn181_p" name="cardiolipin-tetraoctadec-11-enoyl-n-C181" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C81H148O17P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C81H148O17P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C05980</p>
- <p>PUBCHEM: 8259</p>
- </html>
- </notes>
- </species>
- <species id="M_3c4mop_c" name="3-Carboxy-4-methyl-2-oxopentanoate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C7H8O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C7H8O5</p>
- <p>CHEBI: 1467</p>
- <p>KEGG: C04236</p>
- <p>PUBCHEM: 6905</p>
- </html>
- </notes>
- </species>
- <species id="M_gmhep1p_c" name="D-Glycero-D-manno-heptose-1-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C7H13O10P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C7H13O10P</p>
- <p>CHEBI: 28137</p>
- <p>KEGG: C07838</p>
- <p>PUBCHEM: 10040</p>
- </html>
- </notes>
- </species>
- <species id="M_2shchc_c" name="2-Succinyl-6-hydroxy-2-4-cyclohexadiene-1-carboxylate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C11H10O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C11H10O6</p>
- <p>CHEBI: 1277</p>
- <p>KEGG: C05817</p>
- <p>PUBCHEM: 8112</p>
- </html>
- </notes>
- </species>
- <species id="M_cmp_e" name="CMP" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H12N3O8P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H12N3O8P</p>
- <p>CHEBI: 17361</p>
- <p>KEGG: C00055</p>
- <p>PUBCHEM: 3357</p>
- </html>
- </notes>
- </species>
- <species id="M_cmp_c" name="CMP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H12N3O8P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H12N3O8P</p>
- <p>CHEBI: 17361</p>
- <p>KEGG: C00055</p>
- <p>PUBCHEM: 3357</p>
- </html>
- </notes>
- </species>
- <species id="M_dscl_c" name="dihydrosirohydrochlorin" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-7" fbc:chemicalFormula="C42H41N4O16">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C42H41N4O16</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C02463</p>
- <p>PUBCHEM: 5480</p>
- </html>
- </notes>
- </species>
- <species id="M_clpn161_p" name="cardiolipin-tetrahexadec-9-enoyl-n-C161" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C73H132O17P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C73H132O17P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C05980</p>
- <p>PUBCHEM: 8259</p>
- </html>
- </notes>
- </species>
- <species id="M_cmp_p" name="CMP" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H12N3O8P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H12N3O8P</p>
- <p>CHEBI: 17361</p>
- <p>KEGG: C00055</p>
- <p>PUBCHEM: 3357</p>
- </html>
- </notes>
- </species>
- <species id="M_kdo_c" name="3-Deoxy-D-manno-2-octulosonate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H13O8">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C8H13O8</p>
- <p>CHEBI: 32817</p>
- <p>KEGG: C01187</p>
- <p>PUBCHEM: 4413</p>
- </html>
- </notes>
- </species>
- <species id="M_itp_c" name="ITP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H11N4O14P3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H11N4O14P3</p>
- <p>CHEBI: 16039</p>
- <p>KEGG: C00081</p>
- <p>PUBCHEM: 3381</p>
- </html>
- </notes>
- </species>
- <species id="M_apg180_c" name="acyl-phosphatidylglycerol-n-C180" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C60H116O11P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C60H116O11P</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_fruur_p" name="D-Fructuronate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O7">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H9O7</p>
- <p>CHEBI: 4126</p>
- <p>KEGG: C00905</p>
- <p>PUBCHEM: 4160</p>
- </html>
- </notes>
- </species>
- <species id="M_fruur_e" name="D-Fructuronate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O7">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H9O7</p>
- <p>CHEBI: 4126</p>
- <p>KEGG: C00905</p>
- <p>PUBCHEM: 4160</p>
- </html>
- </notes>
- </species>
- <species id="M_fruur_c" name="D-Fructuronate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O7">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H9O7</p>
- <p>CHEBI: 4126</p>
- <p>KEGG: C00905</p>
- <p>PUBCHEM: 4160</p>
- </html>
- </notes>
- </species>
- <species id="M_pppi_c" name="Inorganic-triphosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="HO10P3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: HO10P3</p>
- <p>CHEBI: 18036</p>
- <p>KEGG: C03279</p>
- <p>PUBCHEM: 6138</p>
- </html>
- </notes>
- </species>
- <species id="M_man1p_c" name="D-Mannose-1-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H11O9P</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C03812</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_ps120_c" name="phosphatidylserine-didodecanoyl-n-C120" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H57N1O10P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C30H57N1O10P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C02737</p>
- <p>PUBCHEM: 5698</p>
- </html>
- </notes>
- </species>
- <species id="M_trnaleu_c" name="tRNA-Leu" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="R">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: R</p>
- <p>CHEBI: 29169</p>
- <p>KEGG: C01645</p>
- <p>PUBCHEM: 4794</p>
- </html>
- </notes>
- </species>
- <species id="M_feroxB_e" name="Ferrioxamine-B" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C25H48N6O8">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C25H48N6O8</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 123851</p>
- </html>
- </notes>
- </species>
- <species id="M_mettrna_c" name="L-Methionyl-tRNA-Met" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C5H10NOSR">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H10NOSR</p>
- <p>CHEBI: 16635</p>
- <p>KEGG: C02430</p>
- <p>PUBCHEM: 5457</p>
- </html>
- </notes>
- </species>
- <species id="M_feroxB_c" name="Ferrioxamine-B" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C25H48N6O8">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C25H48N6O8</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 123851</p>
- </html>
- </notes>
- </species>
- <species id="M_camp_c" name="cAMP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H11N5O6P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H11N5O6P</p>
- <p>CHEBI: 17489</p>
- <p>KEGG: C00575</p>
- <p>PUBCHEM: 3854</p>
- </html>
- </notes>
- </species>
- <species id="M_feroxB_p" name="Ferrioxamine-B" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C25H48N6O8">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C25H48N6O8</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 123851</p>
- </html>
- </notes>
- </species>
- <species id="M_tton_e" name="tton_e" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: </p>
- <p>CHEBI: 15987</p>
- <p>KEGG: C01861</p>
- <p>PUBCHEM: 4976</p>
- </html>
- </notes>
- </species>
- <species id="M_remnant1_p" name="residual-atoms-of-reaction-DMBZIDSYN" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C4H2N2O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H2N2O3</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_pdx5p_c" name="Pyridoxine-5-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C8H10NO6P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C8H10NO6P</p>
- <p>CHEBI: 28803</p>
- <p>KEGG: C00627</p>
- <p>PUBCHEM: 3900</p>
- </html>
- </notes>
- </species>
- <species id="M_remnant1_e" name="residual-atoms-of-reaction-DMBZIDSYN" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C4H2N2O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H2N2O3</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_remnant1_c" name="residual-atoms-of-reaction-DMBZIDSYN" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C4H2N2O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H2N2O3</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_23dhb_c" name="2-3-Dihydroxybenzoate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H5O4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C7H5O4</p>
- <p>CHEBI: 18026</p>
- <p>KEGG: C00196</p>
- <p>PUBCHEM: 3496</p>
- </html>
- </notes>
- </species>
- <species id="M_udcdpgal_c" name="Undecaprenyl-diphosphate-galactose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C61H100O12P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C61H100O12P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_1hdec9eg3p_p" name="1-hexadec-9-enoyl-sn-glycerol-3-phosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C19H35O7P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C19H35O7P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_3ump_p" name="3-UMP" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H11N2O9P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H11N2O9P</p>
- <p>CHEBI: 28895</p>
- <p>KEGG: C01368</p>
- <p>PUBCHEM: 4567</p>
- </html>
- </notes>
- </species>
- <species id="M_lipa__cold_p" name="cold-adapted-KDO-2-lipid-A" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C114H202N2O39P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C114H202N2O39P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_1hdec9eg3p_c" name="1-hexadec-9-enoyl-sn-glycerol-3-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C19H35O7P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C19H35O7P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_lipa__cold_e" name="cold-adapted-KDO-2-lipid-A" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C114H202N2O39P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C114H202N2O39P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_3ump_e" name="3-UMP" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H11N2O9P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H11N2O9P</p>
- <p>CHEBI: 28895</p>
- <p>KEGG: C01368</p>
- <p>PUBCHEM: 4567</p>
- </html>
- </notes>
- </species>
- <species id="M_fldox_c" name="flavodoxin-oxidized" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="X">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: X</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C02869</p>
- <p>PUBCHEM: 5805</p>
- </html>
- </notes>
- </species>
- <species id="M_lipa__cold_c" name="cold-adapted-KDO-2-lipid-A" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C114H202N2O39P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C114H202N2O39P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_ocdcea_c" name="octadecenoate-n-C181" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H33O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C18H33O2</p>
- <p>CHEBI: 16196</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 3978</p>
- </html>
- </notes>
- </species>
- <species id="M_ocdcea_e" name="octadecenoate-n-C181" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H33O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C18H33O2</p>
- <p>CHEBI: 16196</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 3978</p>
- </html>
- </notes>
- </species>
- <species id="M_melib_e" name="Melibiose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C12H22O11">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C12H22O11</p>
- <p>CHEBI: 28053</p>
- <p>KEGG: C05402</p>
- <p>PUBCHEM: 7769</p>
- </html>
- </notes>
- </species>
- <species id="M_ocdcea_p" name="octadecenoate-n-C181" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H33O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C18H33O2</p>
- <p>CHEBI: 16196</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 3978</p>
- </html>
- </notes>
- </species>
- <species id="M_fmn_c" name="FMN" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C17H19N4O9P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C17H19N4O9P</p>
- <p>CHEBI: 17621</p>
- <p>KEGG: C00061</p>
- <p>PUBCHEM: 3361</p>
- </html>
- </notes>
- </species>
- <species id="M_cdp4dh6doglc_c" name="CDP-4-dehydro-6-deoxy-D-glucose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C15H21N3O15P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C15H21N3O15P2</p>
- <p>CHEBI: 17494</p>
- <p>KEGG: C01219</p>
- <p>PUBCHEM: 4441</p>
- </html>
- </notes>
- </species>
- <species id="M_phom_c" name="O-Phospho-L-homoserine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H8NO6P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H8NO6P</p>
- <p>CHEBI: 15961</p>
- <p>KEGG: C01102</p>
- <p>PUBCHEM: 4336</p>
- </html>
- </notes>
- </species>
- <species id="M_12dgr161_p" name="1-2-Diacyl-sn-glycerol-dihexadec-9-enoyl-n-C161" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C35H64O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C35H64O5</p>
- <p>CHEBI: 17815</p>
- <p>KEGG: C00641</p>
- <p>PUBCHEM: 3914</p>
- </html>
- </notes>
- </species>
- <species id="M_fe3_p" name="Fe3" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="3" fbc:chemicalFormula="Fe">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: Fe</p>
- <p>CHEBI: 14819</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_octdp_c" name="all-trans-Octaprenyl-diphosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C40H65O7P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C40H65O7P2</p>
- <p>CHEBI: 16275</p>
- <p>KEGG: C04146</p>
- <p>PUBCHEM: 6831</p>
- </html>
- </notes>
- </species>
- <species id="M_icolipa_c" name="inner-core-oligosaccharide-lipid-A-E-coli" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-11" fbc:chemicalFormula="C145H251N2O74P4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C145H251N2O74P4</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_cynt_p" name="Cyanate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CNO">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: CNO</p>
- <p>CHEBI: 28024</p>
- <p>KEGG: C01417</p>
- <p>PUBCHEM: 4604</p>
- </html>
- </notes>
- </species>
- <species id="M_pa2_ST_p" name="pa2_ST_p" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: </p>
- <p>CHEBI: NA</p>
- <p>KEGG: NA</p>
- <p>PUBCHEM: NA</p>
- </html>
- </notes>
- </species>
- <species id="M_fe3_c" name="Fe3" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="3" fbc:chemicalFormula="Fe">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: Fe</p>
- <p>CHEBI: 14819</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_12dgr161_c" name="1-2-Diacyl-sn-glycerol-dihexadec-9-enoyl-n-C161" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C35H64O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C35H64O5</p>
- <p>CHEBI: 17815</p>
- <p>KEGG: C00641</p>
- <p>PUBCHEM: 3914</p>
- </html>
- </notes>
- </species>
- <species id="M_fe3_e" name="Fe3" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="3" fbc:chemicalFormula="Fe">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: Fe</p>
- <p>CHEBI: 14819</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_udcdp2Oag_p" name="Undecaprenyl-diphosphate-O-antigene-2x" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C103H170O41P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C103H170O41P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_cynt_e" name="Cyanate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CNO">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: CNO</p>
- <p>CHEBI: 28024</p>
- <p>KEGG: C01417</p>
- <p>PUBCHEM: 4604</p>
- </html>
- </notes>
- </species>
- <species id="M_26dap__M_e" name="meso-2-6-Diaminoheptanedioate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C7H14N2O4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C7H14N2O4</p>
- <p>CHEBI: 16488 30308</p>
- <p>KEGG: C00680</p>
- <p>PUBCHEM: 3949</p>
- </html>
- </notes>
- </species>
- <species id="M_glcn_p" name="D-Gluconate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O7">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H11O7</p>
- <p>CHEBI: 33198</p>
- <p>KEGG: C00257</p>
- <p>PUBCHEM: 3556</p>
- </html>
- </notes>
- </species>
- <species id="M_26dap__M_c" name="meso-2-6-Diaminoheptanedioate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C7H14N2O4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C7H14N2O4</p>
- <p>CHEBI: 16488 30308</p>
- <p>KEGG: C00680</p>
- <p>PUBCHEM: 3949</p>
- </html>
- </notes>
- </species>
- <species id="M_23dhbzs3_p" name="23dhbzs3_p" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: </p>
- <p>CHEBI: NA</p>
- <p>KEGG: NA</p>
- <p>PUBCHEM: NA</p>
- </html>
- </notes>
- </species>
- <species id="M_udcpo4_c" name="udcpo4_c" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: </p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_udcpo4_e" name="udcpo4_e" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: </p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_glcn_c" name="D-Gluconate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O7">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H11O7</p>
- <p>CHEBI: 33198</p>
- <p>KEGG: C00257</p>
- <p>PUBCHEM: 3556</p>
- </html>
- </notes>
- </species>
- <species id="M_acgam_p" name="N-Acetyl-D-glucosamine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C8H15NO6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C8H15NO6</p>
- <p>CHEBI: 17411</p>
- <p>KEGG: C00140</p>
- <p>PUBCHEM: 3440</p>
- </html>
- </notes>
- </species>
- <species id="M_glcn_e" name="D-Gluconate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O7">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H11O7</p>
- <p>CHEBI: 33198</p>
- <p>KEGG: C00257</p>
- <p>PUBCHEM: 3556</p>
- </html>
- </notes>
- </species>
- <species id="M_26dap__M_p" name="meso-2-6-Diaminoheptanedioate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C7H14N2O4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C7H14N2O4</p>
- <p>CHEBI: 16488 30308</p>
- <p>KEGG: C00680</p>
- <p>PUBCHEM: 3949</p>
- </html>
- </notes>
- </species>
- <species id="M_udcpo4_p" name="udcpo4_p" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: </p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_23dhbzs3_c" name="23dhbzs3_c" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: </p>
- <p>CHEBI: NA</p>
- <p>KEGG: NA</p>
- <p>PUBCHEM: NA</p>
- </html>
- </notes>
- </species>
- <species id="M_23dhbzs3_e" name="23dhbzs3_e" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: </p>
- <p>CHEBI: NA</p>
- <p>KEGG: NA</p>
- <p>PUBCHEM: NA</p>
- </html>
- </notes>
- </species>
- <species id="M_trnaala_c" name="tRNA-Ala" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="R">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: R</p>
- <p>CHEBI: 29170</p>
- <p>KEGG: C01635</p>
- <p>PUBCHEM: 4784</p>
- </html>
- </notes>
- </species>
- <species id="M_crncoa_c" name="L-Carnitinyl-CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C28H46N8O18P3S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C28H46N8O18P3S</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_indole_p" name="Indole" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C8H7N">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C8H7N</p>
- <p>CHEBI: 16881</p>
- <p>KEGG: C00463</p>
- <p>PUBCHEM: 3747</p>
- </html>
- </notes>
- </species>
- <species id="M_3ocvac11eACP_c" name="3-oxo-cis-vacc-11-enoyl-acyl-carrier-protein" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C29H51N2O9PRS">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C29H51N2O9PRS</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_apolpp_p" name="apolpp_p" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: </p>
- <p>CHEBI: NA</p>
- <p>KEGG: NA</p>
- <p>PUBCHEM: NA</p>
- </html>
- </notes>
- </species>
- <species id="M_3oodcoa_c" name="3-Oxooctadecanoyl-CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H64N7O18P3S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C39H64N7O18P3S</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C16216</p>
- <p>PUBCHEM: 47205524</p>
- </html>
- </notes>
- </species>
- <species id="M_indole_e" name="Indole" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C8H7N">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C8H7N</p>
- <p>CHEBI: 16881</p>
- <p>KEGG: C00463</p>
- <p>PUBCHEM: 3747</p>
- </html>
- </notes>
- </species>
- <species id="M_23doguln_c" name="2-3-Dioxo-L-gulonate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H7O7">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H7O7</p>
- <p>CHEBI: 15622</p>
- <p>KEGG: C04575</p>
- <p>PUBCHEM: 7176</p>
- </html>
- </notes>
- </species>
- <species id="M_indole_c" name="Indole" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C8H7N">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C8H7N</p>
- <p>CHEBI: 16881</p>
- <p>KEGG: C00463</p>
- <p>PUBCHEM: 3747</p>
- </html>
- </notes>
- </species>
- <species id="M_cl_c" name="Chloride" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="Cl">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: Cl</p>
- <p>CHEBI: 17996</p>
- <p>KEGG: C00115</p>
- <p>PUBCHEM: 3415</p>
- </html>
- </notes>
- </species>
- <species id="M_sucglu_c" name="N2-Succinyl-L-glutamate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C9H10NO7">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H10NO7</p>
- <p>CHEBI: 48957</p>
- <p>KEGG: C05931</p>
- <p>PUBCHEM: 8219</p>
- </html>
- </notes>
- </species>
- <species id="M_3hoctaACP_c" name="R-3-Hydroxyoctadecanoyl-acyl-carrier-protein" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C29H55N2O9PRS">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C29H55N2O9PRS</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_his__L_c" name="L-Histidine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H9N3O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H9N3O2</p>
- <p>CHEBI: 15971</p>
- <p>KEGG: C00135</p>
- <p>PUBCHEM: 3435</p>
- </html>
- </notes>
- </species>
- <species id="M_2mahmp_c" name="2-Methyl-4-amino-5-hydroxymethylpyrimidine-diphosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H8N3O7P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H8N3O7P2</p>
- <p>CHEBI: 16629</p>
- <p>KEGG: C04752</p>
- <p>PUBCHEM: 7322</p>
- </html>
- </notes>
- </species>
- <species id="M_imp_p" name="IMP" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H11N4O8P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H11N4O8P</p>
- <p>CHEBI: 17202</p>
- <p>KEGG: C00130</p>
- <p>PUBCHEM: 3430</p>
- </html>
- </notes>
- </species>
- <species id="M_dsbard_p" name="periplasmic-protein-disulfide-isomerase-I-reduced" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="XH2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: XH2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_phphhlipa_c" name="phospho-heptosyl-phospho-heptosyl-heptosyl-kdo2-lipidA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-10" fbc:chemicalFormula="C131H230N2O63P4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C131H230N2O63P4</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_f1p_c" name="D-Fructose-1-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H11O9P</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C02976</p>
- <p>PUBCHEM: 5887</p>
- </html>
- </notes>
- </species>
- <species id="M_dhna_c" name="1-4-Dihydroxy-2-naphthoate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H7O4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C11H7O4</p>
- <p>CHEBI: 18094</p>
- <p>KEGG: C03657</p>
- <p>PUBCHEM: 6435</p>
- </html>
- </notes>
- </species>
- <species id="M_imp_c" name="IMP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H11N4O8P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H11N4O8P</p>
- <p>CHEBI: 17202</p>
- <p>KEGG: C00130</p>
- <p>PUBCHEM: 3430</p>
- </html>
- </notes>
- </species>
- <species id="M_lys__L_c" name="L-Lysine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H15N2O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H15N2O2</p>
- <p>CHEBI: 18019</p>
- <p>KEGG: C00047</p>
- <p>PUBCHEM: 3349</p>
- </html>
- </notes>
- </species>
- <species id="M_gsn_e" name="Guanosine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C10H13N5O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H13N5O5</p>
- <p>CHEBI: 16750</p>
- <p>KEGG: C00387</p>
- <p>PUBCHEM: 3677</p>
- </html>
- </notes>
- </species>
- <species id="M_feoxam_c" name="ferroxamine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C25H46FeN6O8">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C25H46FeN6O8</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C07597</p>
- <p>PUBCHEM: 9799</p>
- </html>
- </notes>
- </species>
- <species id="M_1agpe181_p" name="1-Acyl-sn-glycero-3-phosphoethanolamine-n-C181" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C23H46NO7P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C23H46NO7P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C04438</p>
- <p>PUBCHEM: 7069</p>
- </html>
- </notes>
- </species>
- <species id="M_feoxam_e" name="ferroxamine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C25H46FeN6O8">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C25H46FeN6O8</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C07597</p>
- <p>PUBCHEM: 9799</p>
- </html>
- </notes>
- </species>
- <species id="M_gsn_c" name="Guanosine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C10H13N5O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H13N5O5</p>
- <p>CHEBI: 16750</p>
- <p>KEGG: C00387</p>
- <p>PUBCHEM: 3677</p>
- </html>
- </notes>
- </species>
- <species id="M_u3hga_c" name="UDP-3-O-3-hydroxytetradecanoyl-D-glucosamine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C29H50N3O18P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C29H50N3O18P2</p>
- <p>CHEBI: 27392</p>
- <p>KEGG: C06022</p>
- <p>PUBCHEM: 8294</p>
- </html>
- </notes>
- </species>
- <species id="M_gsn_p" name="Guanosine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C10H13N5O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H13N5O5</p>
- <p>CHEBI: 16750</p>
- <p>KEGG: C00387</p>
- <p>PUBCHEM: 3677</p>
- </html>
- </notes>
- </species>
- <species id="M_t3c5ddeceACP_c" name="trans-3-cis-5-dodecenoyl-acyl-carrier-protein" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C23H39N2O8PRS">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C23H39N2O8PRS</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_3hoctACP_c" name="R-3-Hydroxyoctanoyl-acyl-carrier-protein" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H35N2O9PRS">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C19H35N2O9PRS</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C04620</p>
- <p>PUBCHEM: 7210</p>
- </html>
- </notes>
- </species>
- <species id="M_pram_c" name="5-Phospho-beta-D-ribosylamine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H11NO7P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H11NO7P</p>
- <p>CHEBI: 37737</p>
- <p>KEGG: C03090</p>
- <p>PUBCHEM: 5988</p>
- </html>
- </notes>
- </species>
- <species id="M_nmn_e" name="NMN" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H14N2O8P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C11H14N2O8P</p>
- <p>CHEBI: 16171</p>
- <p>KEGG: C00455</p>
- <p>PUBCHEM: 3741</p>
- </html>
- </notes>
- </species>
- <species id="M_nmn_c" name="NMN" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H14N2O8P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C11H14N2O8P</p>
- <p>CHEBI: 16171</p>
- <p>KEGG: C00455</p>
- <p>PUBCHEM: 3741</p>
- </html>
- </notes>
- </species>
- <species id="M_34dhpacet_c" name="3-4-Dihydroxyphenylacetate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H7O4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C8H7O4</p>
- <p>CHEBI: 17612</p>
- <p>KEGG: C01161</p>
- <p>PUBCHEM: 4388</p>
- </html>
- </notes>
- </species>
- <species id="M_udcpp_c" name="Undecaprenyl-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C55H89O4P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C55H89O4P</p>
- <p>CHEBI: 16141</p>
- <p>KEGG: C00348</p>
- <p>PUBCHEM: 3641</p>
- </html>
- </notes>
- </species>
- <species id="M_nmn_p" name="NMN" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H14N2O8P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C11H14N2O8P</p>
- <p>CHEBI: 16171</p>
- <p>KEGG: C00455</p>
- <p>PUBCHEM: 3741</p>
- </html>
- </notes>
- </species>
- <species id="M_anth_c" name="Anthranilate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H6NO2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C7H6NO2</p>
- <p>CHEBI: 30754</p>
- <p>KEGG: C00108</p>
- <p>PUBCHEM: 3408</p>
- </html>
- </notes>
- </species>
- <species id="M_tag__D_p" name="D-Tagatose" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H12O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H12O6</p>
- <p>CHEBI: 4249</p>
- <p>KEGG: C00795</p>
- <p>PUBCHEM: 4053</p>
- </html>
- </notes>
- </species>
- <species id="M_uacmamu_c" name="UDP-N-acetyl-D-mannosaminouronate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C17H22N3O18P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C17H22N3O18P2</p>
- <p>CHEBI: 28581</p>
- <p>KEGG: C06240</p>
- <p>PUBCHEM: 8481</p>
- </html>
- </notes>
- </species>
- <species id="M_tma_p" name="trimethylamine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C3H10N">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H10N</p>
- <p>CHEBI: 18139</p>
- <p>KEGG: C00565</p>
- <p>PUBCHEM: 3844</p>
- </html>
- </notes>
- </species>
- <species id="M_pyam5p_c" name="Pyridoxamine-5-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H12N2O5P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C8H12N2O5P</p>
- <p>CHEBI: 18335</p>
- <p>KEGG: C00647</p>
- <p>PUBCHEM: 3919</p>
- </html>
- </notes>
- </species>
- <species id="M_suchms_c" name="O-Succinyl-L-homoserine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H12NO6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C8H12NO6</p>
- <p>CHEBI: 16160</p>
- <p>KEGG: C01118</p>
- <p>PUBCHEM: 4349</p>
- </html>
- </notes>
- </species>
- <species id="M_prpp_c" name="5-Phospho-alpha-D-ribose-1-diphosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C5H8O14P3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H8O14P3</p>
- <p>CHEBI: 17111</p>
- <p>KEGG: C00119</p>
- <p>PUBCHEM: 3419</p>
- </html>
- </notes>
- </species>
- <species id="M_tag__D_e" name="D-Tagatose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H12O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H12O6</p>
- <p>CHEBI: 4249</p>
- <p>KEGG: C00795</p>
- <p>PUBCHEM: 4053</p>
- </html>
- </notes>
- </species>
- <species id="M_tma_e" name="trimethylamine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C3H10N">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H10N</p>
- <p>CHEBI: 18139</p>
- <p>KEGG: C00565</p>
- <p>PUBCHEM: 3844</p>
- </html>
- </notes>
- </species>
- <species id="M_adphep__LD_c" name="ADP-L-glycero-D-manno-heptose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C17H25N5O16P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C17H25N5O16P2</p>
- <p>CHEBI: 15915</p>
- <p>KEGG: C06398</p>
- <p>PUBCHEM: 8634</p>
- </html>
- </notes>
- </species>
- <species id="M_trnathr_c" name="tRNA-Thr" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="R">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: R</p>
- <p>CHEBI: 29180</p>
- <p>KEGG: C01651</p>
- <p>PUBCHEM: 4800</p>
- </html>
- </notes>
- </species>
- <species id="M_3ig3p_c" name="C--3-Indolyl-glycerol-3-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C11H12NO6P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C11H12NO6P</p>
- <p>CHEBI: 18299</p>
- <p>KEGG: C03506</p>
- <p>PUBCHEM: 6317</p>
- </html>
- </notes>
- </species>
- <species id="M_mobd_e" name="Molybdate-MoO4" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: </p>
- <p>CHEBI: 36264</p>
- <p>KEGG: C06232</p>
- <p>PUBCHEM: 8475</p>
- </html>
- </notes>
- </species>
- <species id="M_3ooctdACP_c" name="3-Oxooctadecanoyl-acyl-carrier-protein" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C29H53N2O9PRS">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C29H53N2O9PRS</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_xu5p__L_c" name="L-Xylulose-5-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H9O8P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H9O8P</p>
- <p>CHEBI: 16593</p>
- <p>KEGG: C03291</p>
- <p>PUBCHEM: 6148</p>
- </html>
- </notes>
- </species>
- <species id="M_mobd_c" name="Molybdate-MoO4" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: </p>
- <p>CHEBI: 36264</p>
- <p>KEGG: C06232</p>
- <p>PUBCHEM: 8475</p>
- </html>
- </notes>
- </species>
- <species id="M_pa180_c" name="1-2-dioctadecanoyl-sn-glycerol-3-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C39H75O8P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C39H75O8P1</p>
- <p>CHEBI: 16337</p>
- <p>KEGG: C00416</p>
- <p>PUBCHEM: 3706</p>
- </html>
- </notes>
- </species>
- <species id="M_cys__D_p" name="D-Cysteine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H7NO2S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H7NO2S</p>
- <p>CHEBI: 16375</p>
- <p>KEGG: C00793</p>
- <p>PUBCHEM: 4051</p>
- </html>
- </notes>
- </species>
- <species id="M_2obut_c" name="2-Oxobutanoate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H5O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H5O3</p>
- <p>CHEBI: 30831</p>
- <p>KEGG: C00109</p>
- <p>PUBCHEM: 3409</p>
- </html>
- </notes>
- </species>
- <species id="M_hdca_p" name="Hexadecanoate-n-C160" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H31O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C16H31O2</p>
- <p>CHEBI: 15756</p>
- <p>KEGG: C00249</p>
- <p>PUBCHEM: 3548</p>
- </html>
- </notes>
- </species>
- <species id="M_pa180_p" name="1-2-dioctadecanoyl-sn-glycerol-3-phosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C39H75O8P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C39H75O8P1</p>
- <p>CHEBI: 16337</p>
- <p>KEGG: C00416</p>
- <p>PUBCHEM: 3706</p>
- </html>
- </notes>
- </species>
- <species id="M_mobd_p" name="Molybdate-MoO4" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: </p>
- <p>CHEBI: 36264</p>
- <p>KEGG: C06232</p>
- <p>PUBCHEM: 8475</p>
- </html>
- </notes>
- </species>
- <species id="M_hdca_e" name="Hexadecanoate-n-C160" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H31O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C16H31O2</p>
- <p>CHEBI: 15756</p>
- <p>KEGG: C00249</p>
- <p>PUBCHEM: 3548</p>
- </html>
- </notes>
- </species>
- <species id="M_hdca_c" name="Hexadecanoate-n-C160" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H31O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C16H31O2</p>
- <p>CHEBI: 15756</p>
- <p>KEGG: C00249</p>
- <p>PUBCHEM: 3548</p>
- </html>
- </notes>
- </species>
- <species id="M_metsox__R__L_c" name="L-methionine-R-sulfoxide" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H11NO3S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H11NO3S</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 847</p>
- </html>
- </notes>
- </species>
- <species id="M_cys__D_e" name="D-Cysteine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H7NO2S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H7NO2S</p>
- <p>CHEBI: 16375</p>
- <p>KEGG: C00793</p>
- <p>PUBCHEM: 4051</p>
- </html>
- </notes>
- </species>
- <species id="M_4per_c" name="4-Phospho-D-erythronate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C4H6O8P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H6O8P</p>
- <p>CHEBI: 49003</p>
- <p>KEGG: C03393</p>
- <p>PUBCHEM: 6224</p>
- </html>
- </notes>
- </species>
- <species id="M_pa161_p" name="1-2-dihexadec-9-enoyl-sn-glycerol-3-phosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C35H63O8P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C35H63O8P1</p>
- <p>CHEBI: 16337</p>
- <p>KEGG: C00416</p>
- <p>PUBCHEM: 3706</p>
- </html>
- </notes>
- </species>
- <species id="M_udpLa4n_c" name="uridine-5--diphospho-beta-4-deoxy-4-amino-L-arabinose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H22N3O15P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C14H22N3O15P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_all__D_p" name="D-Allose" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H12O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H12O6</p>
- <p>CHEBI: 4093</p>
- <p>KEGG: C01487</p>
- <p>PUBCHEM: 4657</p>
- </html>
- </notes>
- </species>
- <species id="M_metsox__R__L_e" name="L-methionine-R-sulfoxide" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H11NO3S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H11NO3S</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 847</p>
- </html>
- </notes>
- </species>
- <species id="M_tmao_p" name="Trimethylamine-N-oxide" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H9NO">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H9NO</p>
- <p>CHEBI: 15724</p>
- <p>KEGG: C01104</p>
- <p>PUBCHEM: 4338</p>
- </html>
- </notes>
- </species>
- <species id="M_pa161_c" name="1-2-dihexadec-9-enoyl-sn-glycerol-3-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C35H63O8P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C35H63O8P1</p>
- <p>CHEBI: 16337</p>
- <p>KEGG: C00416</p>
- <p>PUBCHEM: 3706</p>
- </html>
- </notes>
- </species>
- <species id="M_nad_c" name="Nicotinamide-adenine-dinucleotide" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H26N7O14P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C21H26N7O14P2</p>
- <p>CHEBI: 15846</p>
- <p>KEGG: C00003</p>
- <p>PUBCHEM: 3305</p>
- </html>
- </notes>
- </species>
- <species id="M_all__D_e" name="D-Allose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H12O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H12O6</p>
- <p>CHEBI: 4093</p>
- <p>KEGG: C01487</p>
- <p>PUBCHEM: 4657</p>
- </html>
- </notes>
- </species>
- <species id="M_tmao_e" name="Trimethylamine-N-oxide" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H9NO">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H9NO</p>
- <p>CHEBI: 15724</p>
- <p>KEGG: C01104</p>
- <p>PUBCHEM: 4338</p>
- </html>
- </notes>
- </species>
- <species id="M_fecrm__un_e" name="Ferrichrome-minus-Fe-III" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C27H42N9O12">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C27H42N9O12</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_fecrm__un_c" name="Ferrichrome-minus-Fe-III" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C27H42N9O12">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C27H42N9O12</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_mmcoa__S_c" name="S-Methylmalonyl-CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C25H35N7O19P3S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C25H35N7O19P3S</p>
- <p>CHEBI: 15466</p>
- <p>KEGG: C00683</p>
- <p>PUBCHEM: 3952</p>
- </html>
- </notes>
- </species>
- <species id="M_maltpt_p" name="Maltopentaose" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C30H52O26">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C30H52O26</p>
- <p>CHEBI: 28057</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 124005??3611</p>
- </html>
- </notes>
- </species>
- <species id="M_au_p" name="Gold-Au" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: </p>
- <p>CHEBI: 29287</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_fecrm__un_p" name="Ferrichrome-minus-Fe-III" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C27H42N9O12">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C27H42N9O12</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_maltpt_c" name="Maltopentaose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C30H52O26">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C30H52O26</p>
- <p>CHEBI: 28057</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 124005??3611</p>
- </html>
- </notes>
- </species>
- <species id="M_maltpt_e" name="Maltopentaose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C30H52O26">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C30H52O26</p>
- <p>CHEBI: 28057</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 124005??3611</p>
- </html>
- </notes>
- </species>
- <species id="M_12ppd__R_p" name="R-Propane-1-2-diol" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H8O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H8O2</p>
- <p>CHEBI: 28972</p>
- <p>KEGG: C02912</p>
- <p>PUBCHEM: 5836</p>
- </html>
- </notes>
- </species>
- <species id="M_1agpe140_p" name="1-Acyl-sn-glycero-3-phosphoethanolamine-n-C140" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C19H40NO7P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C19H40NO7P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C04438</p>
- <p>PUBCHEM: 7069</p>
- </html>
- </notes>
- </species>
- <species id="M_gam6p_c" name="D-Glucosamine-6-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H13NO8P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H13NO8P</p>
- <p>CHEBI: 15873</p>
- <p>KEGG: C00352</p>
- <p>PUBCHEM: 3645</p>
- </html>
- </notes>
- </species>
- <species id="M_feroxE_e" name="Ferrioxamine-E" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C27H48N6O9">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C27H48N6O9</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 167864</p>
- </html>
- </notes>
- </species>
- <species id="M_gam6p_e" name="D-Glucosamine-6-phosphate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H13NO8P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H13NO8P</p>
- <p>CHEBI: 15873</p>
- <p>KEGG: C00352</p>
- <p>PUBCHEM: 3645</p>
- </html>
- </notes>
- </species>
- <species id="M_feroxE_c" name="Ferrioxamine-E" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C27H48N6O9">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C27H48N6O9</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 167864</p>
- </html>
- </notes>
- </species>
- <species id="M_b2coa_c" name="Crotonoyl-CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C25H36N7O17P3S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C25H36N7O17P3S</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C00877</p>
- <p>PUBCHEM: 4133</p>
- </html>
- </notes>
- </species>
- <species id="M_gam6p_p" name="D-Glucosamine-6-phosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H13NO8P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H13NO8P</p>
- <p>CHEBI: 15873</p>
- <p>KEGG: C00352</p>
- <p>PUBCHEM: 3645</p>
- </html>
- </notes>
- </species>
- <species id="M_chor_c" name="chorismate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H8O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H8O6</p>
- <p>CHEBI: 17333</p>
- <p>KEGG: C00251</p>
- <p>PUBCHEM: 3550</p>
- </html>
- </notes>
- </species>
- <species id="M_4abz_e" name="4-Aminobenzoate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H6NO2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C7H6NO2</p>
- <p>CHEBI: 30753</p>
- <p>KEGG: C00568</p>
- <p>PUBCHEM: 3847</p>
- </html>
- </notes>
- </species>
- <species id="M_4abz_c" name="4-Aminobenzoate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H6NO2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C7H6NO2</p>
- <p>CHEBI: 30753</p>
- <p>KEGG: C00568</p>
- <p>PUBCHEM: 3847</p>
- </html>
- </notes>
- </species>
- <species id="M_adocblp_c" name="Adenosylcobalamin-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C72H99CoN18O20P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C72H99CoN18O20P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: phosphorylated version of C00194</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_td2coa_c" name="trans-Tetradec-2-enoyl-CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H56N7O17P3S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C35H56N7O17P3S</p>
- <p>CHEBI: 27721</p>
- <p>KEGG: C05273</p>
- <p>PUBCHEM: 7660</p>
- </html>
- </notes>
- </species>
- <species id="M_dsbcrd_p" name="protein-disulfide-isomerase-II-reduced" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="XH2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: XH2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_3omrsACP_c" name="3-Oxotetradecanoyl-acyl-carrier-protein" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C25H45N2O9PRS">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C25H45N2O9PRS</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C05759</p>
- <p>PUBCHEM: 8054</p>
- </html>
- </notes>
- </species>
- <species id="M_pe140_c" name="phosphatidylethanolamine-ditetradecanoyl-n-C140" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C33H66N1O8P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C33H66N1O8P1</p>
- <p>CHEBI: 16038</p>
- <p>KEGG: C00350</p>
- <p>PUBCHEM: 3643</p>
- </html>
- </notes>
- </species>
- <species id="M_acmana_c" name="N-Acetyl-D-mannosamine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C8H15NO6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C8H15NO6</p>
- <p>CHEBI: 17122</p>
- <p>KEGG: C00645</p>
- <p>PUBCHEM: 3918</p>
- </html>
- </notes>
- </species>
- <species id="M_acmana_e" name="N-Acetyl-D-mannosamine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C8H15NO6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C8H15NO6</p>
- <p>CHEBI: 17122</p>
- <p>KEGG: C00645</p>
- <p>PUBCHEM: 3918</p>
- </html>
- </notes>
- </species>
- <species id="M_mmcoa__R_c" name="R-Methylmalonyl-CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C25H35N7O19P3S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C25H35N7O19P3S</p>
- <p>CHEBI: 15465</p>
- <p>KEGG: C01213</p>
- <p>PUBCHEM: 4435</p>
- </html>
- </notes>
- </species>
- <species id="M_pe140_p" name="phosphatidylethanolamine-ditetradecanoyl-n-C140" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C33H66N1O8P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C33H66N1O8P1</p>
- <p>CHEBI: 16038</p>
- <p>KEGG: C00350</p>
- <p>PUBCHEM: 3643</p>
- </html>
- </notes>
- </species>
- <species id="M_1agpg141_p" name="1-Acyl-sn-glycero-3-phosphoglycerol-n-C141" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H38O9P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C20H38O9P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_acmana_p" name="N-Acetyl-D-mannosamine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C8H15NO6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C8H15NO6</p>
- <p>CHEBI: 17122</p>
- <p>KEGG: C00645</p>
- <p>PUBCHEM: 3918</p>
- </html>
- </notes>
- </species>
- <species id="M_frulys_e" name="fructoselysine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C12H25N2O7">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C12H25N2O7</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C16488</p>
- <p>PUBCHEM: 47205784</p>
- </html>
- </notes>
- </species>
- <species id="M_aspsa_c" name="L-Aspartate-4-semialdehyde" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C4H7NO3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H7NO3</p>
- <p>CHEBI: 13086 18051</p>
- <p>KEGG: C00441</p>
- <p>PUBCHEM: 3730</p>
- </html>
- </notes>
- </species>
- <species id="M_udcdp17Oag_p" name="Undecaprenyl-diphosphate-O-antigene-17x" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C463H770O296P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C463H770O296P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_Sfglutth_c" name="S-Formylglutathione" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H16N3O7S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C11H16N3O7S</p>
- <p>CHEBI: 16225</p>
- <p>KEGG: C01031</p>
- <p>PUBCHEM: 4274</p>
- </html>
- </notes>
- </species>
- <species id="M_1tdec7eg3p_c" name="1-tetradec-7-enoyl-sn-glycerol-3-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C17H31O7P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C17H31O7P1</p>
- <p>CHEBI: 16975</p>
- <p>KEGG: C00681</p>
- <p>PUBCHEM: 3950</p>
- </html>
- </notes>
- </species>
- <species id="M_1tdec7eg3p_p" name="1-tetradec-7-enoyl-sn-glycerol-3-phosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C17H31O7P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C17H31O7P1</p>
- <p>CHEBI: 16975</p>
- <p>KEGG: C00681</p>
- <p>PUBCHEM: 3950</p>
- </html>
- </notes>
- </species>
- <species id="M_pydxn_p" name="pydxn_p" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: </p>
- <p>CHEBI: 16709</p>
- <p>KEGG: C00314</p>
- <p>PUBCHEM: 3608</p>
- </html>
- </notes>
- </species>
- <species id="M_pe180_p" name="phosphatidylethanolamine-dioctadecanoyl-n-C180" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C41H82N1O8P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C41H82N1O8P1</p>
- <p>CHEBI: 16038</p>
- <p>KEGG: C00350</p>
- <p>PUBCHEM: 3643</p>
- </html>
- </notes>
- </species>
- <species id="M_pydxn_e" name="Pyridoxine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C8H11NO3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C8H11NO3</p>
- <p>CHEBI: 16709</p>
- <p>KEGG: C00314</p>
- <p>PUBCHEM: 3608</p>
- </html>
- </notes>
- </species>
- <species id="M_chol_p" name="Choline" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C5H14NO">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H14NO</p>
- <p>CHEBI: 15354</p>
- <p>KEGG: C00114</p>
- <p>PUBCHEM: 3414</p>
- </html>
- </notes>
- </species>
- <species id="M_3odecACP_c" name="3-Oxodecanoyl-acyl-carrier-protein" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H37N2O9PRS">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C21H37N2O9PRS</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C05753</p>
- <p>PUBCHEM: 8048</p>
- </html>
- </notes>
- </species>
- <species id="M_udpLa4o_c" name="UDP-4-keto-pyranose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C14H18N2O16P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C14H18N2O16P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_na1_c" name="Sodium" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="Na">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: Na</p>
- <p>CHEBI: 29101</p>
- <p>KEGG: C01330</p>
- <p>PUBCHEM: 4541</p>
- </html>
- </notes>
- </species>
- <species id="M_na1_e" name="Sodium" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="Na">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: Na</p>
- <p>CHEBI: 29101</p>
- <p>KEGG: C01330</p>
- <p>PUBCHEM: 4541</p>
- </html>
- </notes>
- </species>
- <species id="M_aact_c" name="Aminoacetone" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C3H8NO">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H8NO</p>
- <p>CHEBI: 17906</p>
- <p>KEGG: C01888</p>
- <p>PUBCHEM: 5001</p>
- </html>
- </notes>
- </species>
- <species id="M_chol_c" name="Choline" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C5H14NO">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H14NO</p>
- <p>CHEBI: 15354</p>
- <p>KEGG: C00114</p>
- <p>PUBCHEM: 3414</p>
- </html>
- </notes>
- </species>
- <species id="M_chol_e" name="Choline" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C5H14NO">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H14NO</p>
- <p>CHEBI: 15354</p>
- <p>KEGG: C00114</p>
- <p>PUBCHEM: 3414</p>
- </html>
- </notes>
- </species>
- <species id="M_na1_p" name="Sodium" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="Na">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: Na</p>
- <p>CHEBI: 29101</p>
- <p>KEGG: C01330</p>
- <p>PUBCHEM: 4541</p>
- </html>
- </notes>
- </species>
- <species id="M_ugmda_c" name="UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2-6-diaminopimeloyl-D-alanyl-D-alanine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H61N9O28P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C41H61N9O28P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C04882</p>
- <p>PUBCHEM: 7434</p>
- </html>
- </notes>
- </species>
- <species id="M_dnad_c" name="Deamino-NAD" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H24N6O15P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C21H24N6O15P2</p>
- <p>CHEBI: 18304</p>
- <p>KEGG: C00857</p>
- <p>PUBCHEM: 4114</p>
- </html>
- </notes>
- </species>
- <species id="M_dtmp_c" name="dTMP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H13N2O8P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H13N2O8P</p>
- <p>CHEBI: 17013</p>
- <p>KEGG: C00364</p>
- <p>PUBCHEM: 3655</p>
- </html>
- </notes>
- </species>
- <species id="M_dtmp_e" name="dTMP" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H13N2O8P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H13N2O8P</p>
- <p>CHEBI: 17013</p>
- <p>KEGG: C00364</p>
- <p>PUBCHEM: 3655</p>
- </html>
- </notes>
- </species>
- <species id="M_dd2coa_c" name="trans-Dodec-2-enoyl-CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H52N7O17P3S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C33H52N7O17P3S</p>
- <p>CHEBI: 15471</p>
- <p>KEGG: C03221</p>
- <p>PUBCHEM: 6094</p>
- </html>
- </notes>
- </species>
- <species id="M_drib_e" name="2-Deoxy-D-ribose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H10O4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H10O4</p>
- <p>CHEBI: 28816</p>
- <p>KEGG: C01801</p>
- <p>PUBCHEM: 4927</p>
- </html>
- </notes>
- </species>
- <species id="M_drib_c" name="2-Deoxy-D-ribose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H10O4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H10O4</p>
- <p>CHEBI: 28816</p>
- <p>KEGG: C01801</p>
- <p>PUBCHEM: 4927</p>
- </html>
- </notes>
- </species>
- <species id="M_dtmp_p" name="dTMP" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H13N2O8P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H13N2O8P</p>
- <p>CHEBI: 17013</p>
- <p>KEGG: C00364</p>
- <p>PUBCHEM: 3655</p>
- </html>
- </notes>
- </species>
- <species id="M_dadp_c" name="dADP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H12N5O9P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H12N5O9P2</p>
- <p>CHEBI: 16174</p>
- <p>KEGG: C00206</p>
- <p>PUBCHEM: 3506</p>
- </html>
- </notes>
- </species>
- <species id="M_murein3px4p_p" name="two-disacharide-linked-murein-units-tripeptide-crosslinked-tetrapeptide-A2pm-D-ala--middle-of-chain" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C71H107N13O38">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C71H107N13O38</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_drib_p" name="2-Deoxy-D-ribose" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H10O4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H10O4</p>
- <p>CHEBI: 28816</p>
- <p>KEGG: C01801</p>
- <p>PUBCHEM: 4927</p>
- </html>
- </notes>
- </species>
- <species id="M_agm_p" name="Agmatine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C5H16N4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H16N4</p>
- <p>CHEBI: 17431</p>
- <p>KEGG: C00179</p>
- <p>PUBCHEM: 3479</p>
- </html>
- </notes>
- </species>
- <species id="M_3opalmACP_c" name="3-Oxohexadecanoyl-acyl-carrier-protein" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C27H49N2O9PRS">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C27H49N2O9PRS</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C05762</p>
- <p>PUBCHEM: 8057</p>
- </html>
- </notes>
- </species>
- <species id="M_agm_c" name="Agmatine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C5H16N4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H16N4</p>
- <p>CHEBI: 17431</p>
- <p>KEGG: C00179</p>
- <p>PUBCHEM: 3479</p>
- </html>
- </notes>
- </species>
- <species id="M_agm_e" name="Agmatine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C5H16N4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H16N4</p>
- <p>CHEBI: 17431</p>
- <p>KEGG: C00179</p>
- <p>PUBCHEM: 3479</p>
- </html>
- </notes>
- </species>
- <species id="M_hlipa_c" name="heptosyl-kdo2-lipidA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C117H208N2O45P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C117H208N2O45P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_xylu__L_p" name="L-Xylulose" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H10O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H10O5</p>
- <p>CHEBI: 17399</p>
- <p>KEGG: C00312</p>
- <p>PUBCHEM: 3606</p>
- </html>
- </notes>
- </species>
- <species id="M_pa181_p" name="1-2-dioctadec-11-enoyl-sn-glycerol-3-phosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C39H71O8P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C39H71O8P1</p>
- <p>CHEBI: 16337</p>
- <p>KEGG: C00416</p>
- <p>PUBCHEM: 3706</p>
- </html>
- </notes>
- </species>
- <species id="M_xylu__L_c" name="L-Xylulose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H10O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H10O5</p>
- <p>CHEBI: 17399</p>
- <p>KEGG: C00312</p>
- <p>PUBCHEM: 3606</p>
- </html>
- </notes>
- </species>
- <species id="M_xylu__L_e" name="L-Xylulose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H10O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H10O5</p>
- <p>CHEBI: 17399</p>
- <p>KEGG: C00312</p>
- <p>PUBCHEM: 3606</p>
- </html>
- </notes>
- </species>
- <species id="M_pa181_c" name="1-2-dioctadec-11-enoyl-sn-glycerol-3-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C39H71O8P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C39H71O8P1</p>
- <p>CHEBI: 16337</p>
- <p>KEGG: C00416</p>
- <p>PUBCHEM: 3706</p>
- </html>
- </notes>
- </species>
- <species id="M_cpgn_e" name="coprogen" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C35H52N6O13Fe">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C35H52N6O13Fe</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_ipdp_c" name="Isopentenyl-diphosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C5H9O7P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H9O7P2</p>
- <p>CHEBI: 16584</p>
- <p>KEGG: C00129</p>
- <p>PUBCHEM: 3429</p>
- </html>
- </notes>
- </species>
- <species id="M_frulys_p" name="fructoselysine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C12H25N2O7">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C12H25N2O7</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C16488</p>
- <p>PUBCHEM: 47205784</p>
- </html>
- </notes>
- </species>
- <species id="M_tyrtrna_c" name="L-Tyrosyl-tRNA-Tyr" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C9H10NO2R">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H10NO2R</p>
- <p>CHEBI: 29161</p>
- <p>KEGG: C02839</p>
- <p>PUBCHEM: 5781</p>
- </html>
- </notes>
- </species>
- <species id="M_val__L_p" name="L-Valine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H11NO2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H11NO2</p>
- <p>CHEBI: 16414</p>
- <p>KEGG: C00183</p>
- <p>PUBCHEM: 3483</p>
- </html>
- </notes>
- </species>
- <species id="M_dsbdox_c" name="fused-thioldisulfide-interchange-protein-oxidized" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="X">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: X</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_e4p_c" name="D-Erythrose-4-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H7O7P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H7O7P</p>
- <p>CHEBI: 48153</p>
- <p>KEGG: C00279</p>
- <p>PUBCHEM: 3574</p>
- </html>
- </notes>
- </species>
- <species id="M_3oddecACP_c" name="3-Oxododecanoyl-acyl-carrier-protein" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C23H41N2O9PRS">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C23H41N2O9PRS</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C05756</p>
- <p>PUBCHEM: 8051</p>
- </html>
- </notes>
- </species>
- <species id="M_val__L_e" name="L-Valine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H11NO2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H11NO2</p>
- <p>CHEBI: 16414</p>
- <p>KEGG: C00183</p>
- <p>PUBCHEM: 3483</p>
- </html>
- </notes>
- </species>
- <species id="M_adn_e" name="Adenosine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C10H13N5O4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H13N5O4</p>
- <p>CHEBI: 16335</p>
- <p>KEGG: C00212</p>
- <p>PUBCHEM: 3512</p>
- </html>
- </notes>
- </species>
- <species id="M_val__L_c" name="L-Valine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H11NO2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H11NO2</p>
- <p>CHEBI: 16414</p>
- <p>KEGG: C00183</p>
- <p>PUBCHEM: 3483</p>
- </html>
- </notes>
- </species>
- <species id="M_cpgn_c" name="coprogen" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C35H52N6O13Fe">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C35H52N6O13Fe</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_ditp_c" name="dITP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H11N4O13P3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H11N4O13P3</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C01345</p>
- <p>PUBCHEM: 4550</p>
- </html>
- </notes>
- </species>
- <species id="M_3otdcoa_c" name="3-Oxotetradecanoyl-CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H56N7O18P3S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C35H56N7O18P3S</p>
- <p>CHEBI: 28726</p>
- <p>KEGG: C05261</p>
- <p>PUBCHEM: 7648</p>
- </html>
- </notes>
- </species>
- <species id="M_26dap__LL_c" name="LL-2-6-Diaminoheptanedioate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C7H14N2O4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C7H14N2O4</p>
- <p>CHEBI: 16026</p>
- <p>KEGG: C00666</p>
- <p>PUBCHEM: 3935</p>
- </html>
- </notes>
- </species>
- <species id="M_galctn__L_e" name="L-Galactonate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O7">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H11O7</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C15930</p>
- <p>PUBCHEM: 47205248</p>
- </html>
- </notes>
- </species>
- <species id="M_micit_c" name="methylisocitrate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C7H7O7">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C7H7O7</p>
- <p>CHEBI: 15607</p>
- <p>KEGG: C04593</p>
- <p>PUBCHEM: 7191</p>
- </html>
- </notes>
- </species>
- <species id="M_accoa_c" name="Acetyl-CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C23H34N7O17P3S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C23H34N7O17P3S</p>
- <p>CHEBI: 15351</p>
- <p>KEGG: C00024</p>
- <p>PUBCHEM: 3326</p>
- </html>
- </notes>
- </species>
- <species id="M_galctn__L_p" name="L-Galactonate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O7">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H11O7</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C15930</p>
- <p>PUBCHEM: 47205248</p>
- </html>
- </notes>
- </species>
- <species id="M_hco3_c" name="Bicarbonate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CHO3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: CHO3</p>
- <p>CHEBI: 17544</p>
- <p>KEGG: C00288</p>
- <p>PUBCHEM: 3583</p>
- </html>
- </notes>
- </species>
- <species id="M_o2s_p" name="Superoxide-anion" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: O2</p>
- <p>CHEBI: 18421</p>
- <p>KEGG: C00704</p>
- <p>PUBCHEM: 3971</p>
- </html>
- </notes>
- </species>
- <species id="M_ctbt_p" name="crotonobetaine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C7H13NO2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C7H13NO2</p>
- <p>CHEBI: 1774</p>
- <p>KEGG: C04114</p>
- <p>PUBCHEM: 6803</p>
- </html>
- </notes>
- </species>
- <species id="M_d5kgp_c" name="d5kgp_c" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: </p>
- <p>CHEBI: 0</p>
- <p>KEGG: C06893</p>
- <p>PUBCHEM: 9110</p>
- </html>
- </notes>
- </species>
- <species id="M_3php_c" name="3-Phosphohydroxypyruvate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C3H2O7P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H2O7P</p>
- <p>CHEBI: 30933</p>
- <p>KEGG: C03232</p>
- <p>PUBCHEM: 6103</p>
- </html>
- </notes>
- </species>
- <species id="M_o2s_c" name="Superoxide-anion" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: O2</p>
- <p>CHEBI: 18421</p>
- <p>KEGG: C00704</p>
- <p>PUBCHEM: 3971</p>
- </html>
- </notes>
- </species>
- <species id="M_ctbt_c" name="crotonobetaine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C7H13NO2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C7H13NO2</p>
- <p>CHEBI: 1774</p>
- <p>KEGG: C04114</p>
- <p>PUBCHEM: 6803</p>
- </html>
- </notes>
- </species>
- <species id="M_sucorn_c" name="N2-Succinyl-L-ornithine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H15N2O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H15N2O5</p>
- <p>CHEBI: 27574</p>
- <p>KEGG: C03415</p>
- <p>PUBCHEM: 6244</p>
- </html>
- </notes>
- </species>
- <species id="M_cdpdhdecg_c" name="CDP-1-2-dihexadecanoylglycerol" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C44H79N3O15P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C44H79N3O15P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C00269</p>
- <p>PUBCHEM: 3567</p>
- </html>
- </notes>
- </species>
- <species id="M_rml_c" name="L-Rhamnulose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H12O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H12O5</p>
- <p>CHEBI: 17897</p>
- <p>KEGG: C00861</p>
- <p>PUBCHEM: 4118</p>
- </html>
- </notes>
- </species>
- <species id="M_2agpg140_p" name="2-Acyl-sn-glycero-3-phosphoglycerol-n-C140" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H40O9P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C20H40O9P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_2tdecg3p_c" name="2-tetradecanoyl-sn-glycerol-3-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H34O7P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C17H34O7P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C03974</p>
- <p>PUBCHEM: 6693</p>
- </html>
- </notes>
- </species>
- <species id="M_cdpdhdec9eg_c" name="CDP-1-2-dihexadec-9-enoylglycerol" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C44H75N3O15P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C44H75N3O15P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C00269</p>
- <p>PUBCHEM: 3567</p>
- </html>
- </notes>
- </species>
- <species id="M_2agpg140_c" name="2-Acyl-sn-glycero-3-phosphoglycerol-n-C140" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H40O9P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C20H40O9P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_hmgth_c" name="hydroxymethylglutathione" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H18N3O7S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C11H18N3O7S</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 1082</p>
- </html>
- </notes>
- </species>
- <species id="M_acnam_p" name="N-Acetylneuraminate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H18NO9">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C11H18NO9</p>
- <p>CHEBI: 17012</p>
- <p>KEGG: C00270</p>
- <p>PUBCHEM: 3568</p>
- </html>
- </notes>
- </species>
- <species id="M_butso3_e" name="butanesulfonate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H9O3S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H9O3S</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_fadh2_c" name="Flavin-adenine-dinucleotide-reduced" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C27H33N9O15P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C27H33N9O15P2</p>
- <p>CHEBI: 17877</p>
- <p>KEGG: C01352</p>
- <p>PUBCHEM: 4556</p>
- </html>
- </notes>
- </species>
- <species id="M_acnam_e" name="N-Acetylneuraminate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H18NO9">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C11H18NO9</p>
- <p>CHEBI: 17012</p>
- <p>KEGG: C00270</p>
- <p>PUBCHEM: 3568</p>
- </html>
- </notes>
- </species>
- <species id="M_hpyr_c" name="Hydroxypyruvate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H3O4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H3O4</p>
- <p>CHEBI: 30841</p>
- <p>KEGG: C00168</p>
- <p>PUBCHEM: 3468</p>
- </html>
- </notes>
- </species>
- <species id="M_butso3_p" name="butanesulfonate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H9O3S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H9O3S</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_cd2_e" name="Cadmium" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Cd">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: Cd</p>
- <p>CHEBI: 48775</p>
- <p>KEGG: C01413</p>
- <p>PUBCHEM: 4601</p>
- </html>
- </notes>
- </species>
- <species id="M_fmettrna_c" name="N-Formylmethionyl-tRNA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H9NO2SR">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H9NO2SR</p>
- <p>CHEBI: 17119</p>
- <p>KEGG: C03294</p>
- <p>PUBCHEM: 6151</p>
- </html>
- </notes>
- </species>
- <species id="M_cd2_c" name="Cadmium" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Cd">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: Cd</p>
- <p>CHEBI: 48775</p>
- <p>KEGG: C01413</p>
- <p>PUBCHEM: 4601</p>
- </html>
- </notes>
- </species>
- <species id="M_cob2nda_c" name="Cob-II-yrinate-a-c-diamide" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H56CoN6O12">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C45H56CoN6O12</p>
- <p>CHEBI: 27937</p>
- <p>KEGG: C06504</p>
- <p>PUBCHEM: 8735</p>
- </html>
- </notes>
- </species>
- <species id="M_2agpg180_p" name="2-Acyl-sn-glycero-3-phosphoglycerol-n-C180" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H48O9P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C24H48O9P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_cd2_p" name="Cadmium" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Cd">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: Cd</p>
- <p>CHEBI: 48775</p>
- <p>KEGG: C01413</p>
- <p>PUBCHEM: 4601</p>
- </html>
- </notes>
- </species>
- <species id="M_paps_c" name="3-Phosphoadenylyl-sulfate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H11N5O13P2S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H11N5O13P2S</p>
- <p>CHEBI: 17980</p>
- <p>KEGG: C00053</p>
- <p>PUBCHEM: 3355</p>
- </html>
- </notes>
- </species>
- <species id="M_cpg180_c" name="cyclopropane-phosphatidylglycerol-dioctadec-11-12-cyclo-anoyl-n-C180-cyclo" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C44H82O10P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C44H82O10P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_2agpg180_c" name="2-Acyl-sn-glycero-3-phosphoglycerol-n-C180" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H48O9P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C24H48O9P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_2hdec9eg3p_c" name="2-hexadec-9-enoyl-sn-glycerol-3-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H36O7P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C19H36O7P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C03974</p>
- <p>PUBCHEM: 6693</p>
- </html>
- </notes>
- </species>
- <species id="M_murein3p3p_p" name="two-linked-disacharide-tripeptide-murein-units-uncrosslinked-middle-of-chain" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C68H104N12O38">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C68H104N12O38</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_uppg3_c" name="Uroporphyrinogen-III" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C40H36N4O16">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C40H36N4O16</p>
- <p>CHEBI: 15437</p>
- <p>KEGG: C01051</p>
- <p>PUBCHEM: 4293</p>
- </html>
- </notes>
- </species>
- <species id="M_adocbi_c" name="Adenosyl-cobinamide" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C58H84CoN16O11">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C58H84CoN16O11</p>
- <p>CHEBI: 2480</p>
- <p>KEGG: C06508</p>
- <p>PUBCHEM: 8739</p>
- </html>
- </notes>
- </species>
- <species id="M_2hdec9eg3p_p" name="2-hexadec-9-enoyl-sn-glycerol-3-phosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H36O7P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C19H36O7P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C03974</p>
- <p>PUBCHEM: 6693</p>
- </html>
- </notes>
- </species>
- <species id="M_gtspmd_c" name="Glutathionylspermidine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C17H36N6O5S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C17H36N6O5S</p>
- <p>CHEBI: 16613</p>
- <p>KEGG: C05730</p>
- <p>PUBCHEM: 8032</p>
- </html>
- </notes>
- </species>
- <species id="M_cpe160_c" name="cyclopropane-phosphatidylethanolamine-dihexadec-9-10-cyclo-anoyl-n-C160-cyclo" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C39H74N1O8P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C39H74N1O8P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_acetol_c" name="Acetol" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H6O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H6O2</p>
- <p>CHEBI: 27957</p>
- <p>KEGG: C05235</p>
- <p>PUBCHEM: 7630</p>
- </html>
- </notes>
- </species>
- <species id="M_gcald_c" name="Glycolaldehyde" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C2H4O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C2H4O2</p>
- <p>CHEBI: 17071</p>
- <p>KEGG: C00266</p>
- <p>PUBCHEM: 3564</p>
- </html>
- </notes>
- </species>
- <species id="M_mso3_p" name="methanesulfonate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CH3O3S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: CH3O3S</p>
- <p>CHEBI: 25224</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 49991312</p>
- </html>
- </notes>
- </species>
- <species id="M_trnaasn_c" name="tRNA-Asn" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C10H17O10PR2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H17O10PR2</p>
- <p>CHEBI: 29172</p>
- <p>KEGG: C01637</p>
- <p>PUBCHEM: 4786</p>
- </html>
- </notes>
- </species>
- <species id="M_tton_p" name="tton_p" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: </p>
- <p>CHEBI: 15987</p>
- <p>KEGG: C01861</p>
- <p>PUBCHEM: 4976</p>
- </html>
- </notes>
- </species>
- <species id="M_pe141_p" name="phosphatidylethanolamine-ditetradec-7-enoyl-n-C141" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C33H62N1O8P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C33H62N1O8P1</p>
- <p>CHEBI: 16038</p>
- <p>KEGG: C00350</p>
- <p>PUBCHEM: 3643</p>
- </html>
- </notes>
- </species>
- <species id="M_2agpe161_c" name="2-Acyl-sn-glycero-3-phosphoethanolamine-n-C161" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C21H42NO7P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C21H42NO7P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C05973</p>
- <p>PUBCHEM: 8253</p>
- </html>
- </notes>
- </species>
- <species id="M_phetrna_c" name="L-Phenylalanyl-tRNA-Phe" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C9H10NOR">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H10NOR</p>
- <p>CHEBI: 29153</p>
- <p>KEGG: C03511</p>
- <p>PUBCHEM: 6321</p>
- </html>
- </notes>
- </species>
- <species id="M_2agpe161_p" name="2-Acyl-sn-glycero-3-phosphoethanolamine-n-C161" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C21H42NO7P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C21H42NO7P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C05973</p>
- <p>PUBCHEM: 8253</p>
- </html>
- </notes>
- </species>
- <species id="M_pe141_c" name="phosphatidylethanolamine-ditetradec-7-enoyl-n-C141" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C33H62N1O8P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C33H62N1O8P1</p>
- <p>CHEBI: 16038</p>
- <p>KEGG: C00350</p>
- <p>PUBCHEM: 3643</p>
- </html>
- </notes>
- </species>
- <species id="M_dcacoa_c" name="Decanoyl-CoA-n-C100CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C31H50N7O17P3S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C31H50N7O17P3S</p>
- <p>CHEBI: 28493</p>
- <p>KEGG: C05274</p>
- <p>PUBCHEM: 7661</p>
- </html>
- </notes>
- </species>
- <species id="M_his__L_p" name="L-Histidine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H9N3O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H9N3O2</p>
- <p>CHEBI: 15971</p>
- <p>KEGG: C00135</p>
- <p>PUBCHEM: 3435</p>
- </html>
- </notes>
- </species>
- <species id="M_gdpddman_c" name="GDP-4-dehydro-6-deoxy-D-mannose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C16H21N5O15P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C16H21N5O15P2</p>
- <p>CHEBI: 16955</p>
- <p>KEGG: C01222</p>
- <p>PUBCHEM: 4444</p>
- </html>
- </notes>
- </species>
- <species id="M_5mtr_c" name="5-Methylthio-D-ribose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H12O4S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H12O4S</p>
- <p>CHEBI: 16895</p>
- <p>KEGG: C03089</p>
- <p>PUBCHEM: 5987</p>
- </html>
- </notes>
- </species>
- <species id="M_4hba_c" name="4-Hydroxy-benzyl-alcohol" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C7H8O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C7H8O2</p>
- <p>CHEBI: 30746</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 125??3480</p>
- </html>
- </notes>
- </species>
- <species id="M_2ippm_c" name="2-Isopropylmaleate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C7H8O4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C7H8O4</p>
- <p>CHEBI: 17275</p>
- <p>KEGG: C02631</p>
- <p>PUBCHEM: 5611</p>
- </html>
- </notes>
- </species>
- <species id="M_xylu__D_c" name="D-Xylulose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H10O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H10O5</p>
- <p>CHEBI: 17140</p>
- <p>KEGG: C00310</p>
- <p>PUBCHEM: 3604</p>
- </html>
- </notes>
- </species>
- <species id="M_trnaasp_c" name="tRNA-Asp" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="R">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: R</p>
- <p>CHEBI: 29186</p>
- <p>KEGG: C01638</p>
- <p>PUBCHEM: 4787</p>
- </html>
- </notes>
- </species>
- <species id="M_udcdp6Oag_p" name="Undecaprenyl-diphosphate-O-antigene-6x" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C199H330O109P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C199H330O109P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_h2_e" name="H2" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="H2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: H2</p>
- <p>CHEBI: 18276</p>
- <p>KEGG: C00282</p>
- <p>PUBCHEM: 3577</p>
- </html>
- </notes>
- </species>
- <species id="M_udcpgr_c" name="udcpgr_c" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: </p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_h2_c" name="H2" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="H2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: H2</p>
- <p>CHEBI: 18276</p>
- <p>KEGG: C00282</p>
- <p>PUBCHEM: 3577</p>
- </html>
- </notes>
- </species>
- <species id="M_glcr_c" name="D-Glucarate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H8O8">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H8O8</p>
- <p>CHEBI: 16002</p>
- <p>KEGG: C00818</p>
- <p>PUBCHEM: 4076</p>
- </html>
- </notes>
- </species>
- <species id="M_thrtrna_c" name="L-Threonyl-tRNA-Thr" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C4H8NO2R">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H8NO2R</p>
- <p>CHEBI: 29163</p>
- <p>KEGG: C02992</p>
- <p>PUBCHEM: 5901</p>
- </html>
- </notes>
- </species>
- <species id="M_maltttr_e" name="Maltotetraose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C24H42O21">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C24H42O21</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C02052</p>
- <p>PUBCHEM: 5141</p>
- </html>
- </notes>
- </species>
- <species id="M_ps160_c" name="phosphatidylserine-dihexadecanoyl-n-C160" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C38H73N1O10P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C38H73N1O10P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C02737</p>
- <p>PUBCHEM: 5698</p>
- </html>
- </notes>
- </species>
- <species id="M_zn2_p" name="Zinc" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Zn">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: Zn</p>
- <p>CHEBI: 29105</p>
- <p>KEGG: C00038</p>
- <p>PUBCHEM: 3340</p>
- </html>
- </notes>
- </species>
- <species id="M_maltttr_c" name="Maltotetraose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C24H42O21">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C24H42O21</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C02052</p>
- <p>PUBCHEM: 5141</p>
- </html>
- </notes>
- </species>
- <species id="M_udcdp11Oag_p" name="Undecaprenyl-diphosphate-O-antigene-11x" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C319H530O194P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C319H530O194P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_h2_p" name="H2" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="H2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: H2</p>
- <p>CHEBI: 18276</p>
- <p>KEGG: C00282</p>
- <p>PUBCHEM: 3577</p>
- </html>
- </notes>
- </species>
- <species id="M_o2s_e" name="Superoxide-anion" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: O2</p>
- <p>CHEBI: 18421</p>
- <p>KEGG: C00704</p>
- <p>PUBCHEM: 3971</p>
- </html>
- </notes>
- </species>
- <species id="M_maltttr_p" name="Maltotetraose" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C24H42O21">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C24H42O21</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C02052</p>
- <p>PUBCHEM: 5141</p>
- </html>
- </notes>
- </species>
- <species id="M_zn2_c" name="Zinc" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Zn">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: Zn</p>
- <p>CHEBI: 29105</p>
- <p>KEGG: C00038</p>
- <p>PUBCHEM: 3340</p>
- </html>
- </notes>
- </species>
- <species id="M_cys__L_c" name="L-Cysteine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H7NO2S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H7NO2S</p>
- <p>CHEBI: 17561</p>
- <p>KEGG: C00097</p>
- <p>PUBCHEM: 3397</p>
- </html>
- </notes>
- </species>
- <species id="M_eca2und_p" name="enterobacterial-common-antigen-x2-undecaprenyl-diphosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C103H162N6O37P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C103H162N6O37P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_gmhep17bp_c" name="D-Glycero-D-manno-heptose-1-7-bisphosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C7H12O13P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C7H12O13P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C11472</p>
- <p>PUBCHEM: 13642</p>
- </html>
- </notes>
- </species>
- <species id="M_tungs_e" name="tungstate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="O4W1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: O4W1</p>
- <p>CHEBI: 46502</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 26697048</p>
- </html>
- </notes>
- </species>
- <species id="M_thr__L_p" name="L-Threonine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C4H9NO3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H9NO3</p>
- <p>CHEBI: 16857</p>
- <p>KEGG: C00188</p>
- <p>PUBCHEM: 3488</p>
- </html>
- </notes>
- </species>
- <species id="M_3hpppn_e" name="3-3-hydroxy-phenyl-propionate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H9O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H9O3</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_tungs_c" name="tungstate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="O4W1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: O4W1</p>
- <p>CHEBI: 46502</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 26697048</p>
- </html>
- </notes>
- </species>
- <species id="M_mthgxl_c" name="Methylglyoxal" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H4O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H4O2</p>
- <p>CHEBI: 17158</p>
- <p>KEGG: C00546</p>
- <p>PUBCHEM: 3827</p>
- </html>
- </notes>
- </species>
- <species id="M_udcpgrm_c" name="udcpgrm_c" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: </p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 23061145</p>
- </html>
- </notes>
- </species>
- <species id="M_thr__L_c" name="L-Threonine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C4H9NO3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H9NO3</p>
- <p>CHEBI: 16857</p>
- <p>KEGG: C00188</p>
- <p>PUBCHEM: 3488</p>
- </html>
- </notes>
- </species>
- <species id="M_thr__L_e" name="L-Threonine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C4H9NO3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H9NO3</p>
- <p>CHEBI: 16857</p>
- <p>KEGG: C00188</p>
- <p>PUBCHEM: 3488</p>
- </html>
- </notes>
- </species>
- <species id="M_tungs_p" name="tungstate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="O4W1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: O4W1</p>
- <p>CHEBI: 46502</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 26697048</p>
- </html>
- </notes>
- </species>
- <species id="M_3hpppn_p" name="3-3-hydroxy-phenyl-propionate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H9O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H9O3</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_4abut_e" name="4-Aminobutanoate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C4H9NO2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H9NO2</p>
- <p>CHEBI: 16865</p>
- <p>KEGG: C00334</p>
- <p>PUBCHEM: 3628</p>
- </html>
- </notes>
- </species>
- <species id="M_4abut_c" name="4-Aminobutanoate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C4H9NO2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H9NO2</p>
- <p>CHEBI: 16865</p>
- <p>KEGG: C00334</p>
- <p>PUBCHEM: 3628</p>
- </html>
- </notes>
- </species>
- <species id="M_25dkglcn_c" name="2-5-diketo-D-gluconate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H7O7">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H7O7</p>
- <p>CHEBI: 18281</p>
- <p>KEGG: C02780</p>
- <p>PUBCHEM: 5731</p>
- </html>
- </notes>
- </species>
- <species id="M_2agpe120_c" name="2-Acyl-sn-glycero-3-phosphoethanolamine-n-C120" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C17H36NO7P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C17H36NO7P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C05973</p>
- <p>PUBCHEM: 8253</p>
- </html>
- </notes>
- </species>
- <species id="M_gln__L_p" name="L-Glutamine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H10N2O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H10N2O3</p>
- <p>CHEBI: 18050</p>
- <p>KEGG: C00064</p>
- <p>PUBCHEM: 3364</p>
- </html>
- </notes>
- </species>
- <species id="M_4abut_p" name="4-Aminobutanoate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C4H9NO2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H9NO2</p>
- <p>CHEBI: 16865</p>
- <p>KEGG: C00334</p>
- <p>PUBCHEM: 3628</p>
- </html>
- </notes>
- </species>
- <species id="M_murein5p3p_p" name="two-linked-disacharide-pentapeptide-and-tripeptide-murein-units-uncrosslinked-middle-of-chain" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C74H114N14O40">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C74H114N14O40</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_gln__L_e" name="L-Glutamine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H10N2O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H10N2O3</p>
- <p>CHEBI: 18050</p>
- <p>KEGG: C00064</p>
- <p>PUBCHEM: 3364</p>
- </html>
- </notes>
- </species>
- <species id="M_imacp_c" name="3-Imidazol-4-yl-2-oxopropyl-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H7N2O5P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H7N2O5P</p>
- <p>CHEBI: 16426</p>
- <p>KEGG: C01267</p>
- <p>PUBCHEM: 4486</p>
- </html>
- </notes>
- </species>
- <species id="M_gln__L_c" name="L-Glutamine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H10N2O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H10N2O3</p>
- <p>CHEBI: 18050</p>
- <p>KEGG: C00064</p>
- <p>PUBCHEM: 3364</p>
- </html>
- </notes>
- </species>
- <species id="M_pgp161_c" name="Phosphatidylglycerophosphate-dihexadec-9-enoyl-n-C161" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C38H69O13P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C38H69O13P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_23ddhb_c" name="2-3-Dihydro-2-3-dihydroxybenzoate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H7O4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C7H7O4</p>
- <p>CHEBI: 15941</p>
- <p>KEGG: C04171</p>
- <p>PUBCHEM: 6852</p>
- </html>
- </notes>
- </species>
- <species id="M_udpg_p" name="UDPglucose" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C15H22N2O17P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C15H22N2O17P2</p>
- <p>CHEBI: 18066</p>
- <p>KEGG: C00029</p>
- <p>PUBCHEM: 3331</p>
- </html>
- </notes>
- </species>
- <species id="M_dcamp_c" name="N6-1-2-Dicarboxyethyl-AMP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C14H14N5O11P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C14H14N5O11P</p>
- <p>CHEBI: 15919</p>
- <p>KEGG: C03794</p>
- <p>PUBCHEM: 6543</p>
- </html>
- </notes>
- </species>
- <species id="M_udpg_e" name="UDPglucose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C15H22N2O17P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C15H22N2O17P2</p>
- <p>CHEBI: 18066</p>
- <p>KEGG: C00029</p>
- <p>PUBCHEM: 3331</p>
- </html>
- </notes>
- </species>
- <species id="M_udpg_c" name="UDPglucose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C15H22N2O17P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C15H22N2O17P2</p>
- <p>CHEBI: 18066</p>
- <p>KEGG: C00029</p>
- <p>PUBCHEM: 3331</p>
- </html>
- </notes>
- </species>
- <species id="M_co2_p" name="CO2" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="CO2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: CO2</p>
- <p>CHEBI: 16526</p>
- <p>KEGG: C00011</p>
- <p>PUBCHEM: 3313</p>
- </html>
- </notes>
- </species>
- <species id="M_lipidX_c" name="2-3-Bis-3-hydroxytetradecanoyl-beta-D-glucosaminyl-1-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C34H64NO12P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C34H64NO12P</p>
- <p>CHEBI: 16942</p>
- <p>KEGG: C04824</p>
- <p>PUBCHEM: 7385</p>
- </html>
- </notes>
- </species>
- <species id="M_udcdp16Oag_p" name="Undecaprenyl-diphosphate-O-antigene-16x" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C439H730O279P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C439H730O279P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_co2_c" name="CO2" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="CO2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: CO2</p>
- <p>CHEBI: 16526</p>
- <p>KEGG: C00011</p>
- <p>PUBCHEM: 3313</p>
- </html>
- </notes>
- </species>
- <species id="M_co2_e" name="CO2" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="CO2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: CO2</p>
- <p>CHEBI: 16526</p>
- <p>KEGG: C00011</p>
- <p>PUBCHEM: 3313</p>
- </html>
- </notes>
- </species>
- <species id="M_mql8_c" name="Menaquinol-8" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C51H74O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C51H74O2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C05819</p>
- <p>PUBCHEM: 8114</p>
- </html>
- </notes>
- </species>
- <species id="M_amp_p" name="AMP" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O7P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H12N5O7P</p>
- <p>CHEBI: 16027</p>
- <p>KEGG: C00020</p>
- <p>PUBCHEM: 3322</p>
- </html>
- </notes>
- </species>
- <species id="M_3ohcoa_c" name="3-Oxohexanoyl-CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C27H40N7O18P3S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C27H40N7O18P3S</p>
- <p>CHEBI: 27648</p>
- <p>KEGG: C05269</p>
- <p>PUBCHEM: 7656</p>
- </html>
- </notes>
- </species>
- <species id="M_2dhglcn_c" name="2-Dehydro-D-gluconate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O7">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H9O7</p>
- <p>CHEBI: 16808</p>
- <p>KEGG: C00629</p>
- <p>PUBCHEM: 3902</p>
- </html>
- </notes>
- </species>
- <species id="M_glx_c" name="Glyoxylate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H1O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C2H1O3</p>
- <p>CHEBI: 16891</p>
- <p>KEGG: C00048</p>
- <p>PUBCHEM: 3350</p>
- </html>
- </notes>
- </species>
- <species id="M_2hh24dd_c" name="2-Hydroxyhepta-2-4-dienedioate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C7H6O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C7H6O5</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C05600</p>
- <p>PUBCHEM: 7923</p>
- </html>
- </notes>
- </species>
- <species id="M_2tdecg3p_p" name="2-tetradecanoyl-sn-glycerol-3-phosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H34O7P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C17H34O7P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C03974</p>
- <p>PUBCHEM: 6693</p>
- </html>
- </notes>
- </species>
- <species id="M_crn_c" name="L-Carnitine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C7H15NO3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C7H15NO3</p>
- <p>CHEBI: 16347</p>
- <p>KEGG: C00318</p>
- <p>PUBCHEM: 3612</p>
- </html>
- </notes>
- </species>
- <species id="M_3amp_e" name="3-AMP" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O7P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H12N5O7P</p>
- <p>CHEBI: 28931</p>
- <p>KEGG: C01367</p>
- <p>PUBCHEM: 4566</p>
- </html>
- </notes>
- </species>
- <species id="M_crn_e" name="L-Carnitine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C7H15NO3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C7H15NO3</p>
- <p>CHEBI: 16347</p>
- <p>KEGG: C00318</p>
- <p>PUBCHEM: 3612</p>
- </html>
- </notes>
- </species>
- <species id="M_kdolipid4_c" name="KDO-lipid-IV-A" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C76H137N2O30P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C76H137N2O30P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C06024</p>
- <p>PUBCHEM: 8296</p>
- </html>
- </notes>
- </species>
- <species id="M_pgp140_c" name="Phosphatidylglycerophosphate-ditetradecanoyl-n-C140" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C34H65O13P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C34H65O13P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C03892</p>
- <p>PUBCHEM: 6624</p>
- </html>
- </notes>
- </species>
- <species id="M_3amp_p" name="3-AMP" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O7P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H12N5O7P</p>
- <p>CHEBI: 28931</p>
- <p>KEGG: C01367</p>
- <p>PUBCHEM: 4566</p>
- </html>
- </notes>
- </species>
- <species id="M_crn_p" name="L-Carnitine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C7H15NO3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C7H15NO3</p>
- <p>CHEBI: 16347</p>
- <p>KEGG: C00318</p>
- <p>PUBCHEM: 3612</p>
- </html>
- </notes>
- </species>
- <species id="M_pgp140_p" name="Phosphatidylglycerophosphate-ditetradecanoyl-n-C140" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C34H65O13P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C34H65O13P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C03892</p>
- <p>PUBCHEM: 6624</p>
- </html>
- </notes>
- </species>
- <species id="M_dmbzid_c" name="5-6-Dimethylbenzimidazole" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C9H10N2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H10N2</p>
- <p>CHEBI: 15890</p>
- <p>KEGG: C03114</p>
- <p>PUBCHEM: 6009</p>
- </html>
- </notes>
- </species>
- <species id="M_grxrd_c" name="glutaredoxin-reduced" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="XH2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: XH2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_amp_e" name="AMP" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O7P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H12N5O7P</p>
- <p>CHEBI: 16027</p>
- <p>KEGG: C00020</p>
- <p>PUBCHEM: 3322</p>
- </html>
- </notes>
- </species>
- <species id="M_g3pc_c" name="sn-Glycero-3-phosphocholine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C8H20NO6P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C8H20NO6P</p>
- <p>CHEBI: 16870</p>
- <p>KEGG: C00670</p>
- <p>PUBCHEM: 3939</p>
- </html>
- </notes>
- </species>
- <species id="M_prfp_c" name="1-5-Phosphoribosyl-5-5-phosphoribosylamino-methylideneaminoimidazole-4-carboxamide" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C15H21N5O15P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C15H21N5O15P2</p>
- <p>CHEBI: 18302</p>
- <p>KEGG: C04896</p>
- <p>PUBCHEM: 7447</p>
- </html>
- </notes>
- </species>
- <species id="M_crn__D_p" name="D-Carnitine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C7H15NO3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C7H15NO3</p>
- <p>CHEBI: 3424</p>
- <p>KEGG: C00487</p>
- <p>PUBCHEM: 3770</p>
- </html>
- </notes>
- </species>
- <species id="M_glyc2p_e" name="Glycerol-2-phosphate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H7O6P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H7O6P</p>
- <p>CHEBI: 17270</p>
- <p>KEGG: C02979</p>
- <p>PUBCHEM: 5889</p>
- </html>
- </notes>
- </species>
- <species id="M_oxur_c" name="Oxalureate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H3N2O4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H3N2O4</p>
- <p>CHEBI: 16582</p>
- <p>KEGG: C00802</p>
- <p>PUBCHEM: 4060</p>
- </html>
- </notes>
- </species>
- <species id="M_crn__D_c" name="D-Carnitine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C7H15NO3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C7H15NO3</p>
- <p>CHEBI: 3424</p>
- <p>KEGG: C00487</p>
- <p>PUBCHEM: 3770</p>
- </html>
- </notes>
- </species>
- <species id="M_2cpr5p_c" name="1-2-Carboxyphenylamino-1-deoxy-D-ribulose-5-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C12H13NO9P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C12H13NO9P</p>
- <p>CHEBI: 29112</p>
- <p>KEGG: C01302</p>
- <p>PUBCHEM: 4520</p>
- </html>
- </notes>
- </species>
- <species id="M_succ_p" name="Succinate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H4O4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H4O4</p>
- <p>CHEBI: 15741</p>
- <p>KEGG: C00042</p>
- <p>PUBCHEM: 3344</p>
- </html>
- </notes>
- </species>
- <species id="M_pgp141_p" name="Phosphatidylglycerophosphate-ditetradec-7-enoyl-n-C141" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C34H61O13P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C34H61O13P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C03892</p>
- <p>PUBCHEM: 6624</p>
- </html>
- </notes>
- </species>
- <species id="M_diglyceride_prolpp_c" name="diglyceride_prolpp_c" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: </p>
- <p>CHEBI: NA</p>
- <p>KEGG: NA</p>
- <p>PUBCHEM: NA</p>
- </html>
- </notes>
- </species>
- <species id="M_thym_e" name="Thymine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H6N2O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H6N2O2</p>
- <p>CHEBI: 17821</p>
- <p>KEGG: C00178</p>
- <p>PUBCHEM: 3478</p>
- </html>
- </notes>
- </species>
- <species id="M_dump_c" name="dUMP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H11N2O8P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H11N2O8P</p>
- <p>CHEBI: 17622</p>
- <p>KEGG: C00365</p>
- <p>PUBCHEM: 3656</p>
- </html>
- </notes>
- </species>
- <species id="M_pgp141_c" name="Phosphatidylglycerophosphate-ditetradec-7-enoyl-n-C141" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C34H61O13P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C34H61O13P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C03892</p>
- <p>PUBCHEM: 6624</p>
- </html>
- </notes>
- </species>
- <species id="M_succ_c" name="Succinate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H4O4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H4O4</p>
- <p>CHEBI: 15741</p>
- <p>KEGG: C00042</p>
- <p>PUBCHEM: 3344</p>
- </html>
- </notes>
- </species>
- <species id="M_succ_e" name="Succinate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H4O4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H4O4</p>
- <p>CHEBI: 15741</p>
- <p>KEGG: C00042</p>
- <p>PUBCHEM: 3344</p>
- </html>
- </notes>
- </species>
- <species id="M_trnagln_c" name="tRNA-Gln" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="R">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: R</p>
- <p>CHEBI: 29168</p>
- <p>KEGG: C01640</p>
- <p>PUBCHEM: 4789</p>
- </html>
- </notes>
- </species>
- <species id="M_ahcys_c" name="S-Adenosyl-L-homocysteine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C14H20N6O5S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C14H20N6O5S</p>
- <p>CHEBI: 16680</p>
- <p>KEGG: C00021</p>
- <p>PUBCHEM: 3323</p>
- </html>
- </notes>
- </species>
- <species id="M_dump_p" name="dUMP" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H11N2O8P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H11N2O8P</p>
- <p>CHEBI: 17622</p>
- <p>KEGG: C00365</p>
- <p>PUBCHEM: 3656</p>
- </html>
- </notes>
- </species>
- <species id="M_3oocoa_c" name="3-Oxooctanoyl-CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C29H44N7O18P3S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C29H44N7O18P3S</p>
- <p>CHEBI: 28264</p>
- <p>KEGG: C05267</p>
- <p>PUBCHEM: 7654</p>
- </html>
- </notes>
- </species>
- <species id="M_acnam_c" name="N-Acetylneuraminate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H18NO9">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C11H18NO9</p>
- <p>CHEBI: 17012</p>
- <p>KEGG: C00270</p>
- <p>PUBCHEM: 3568</p>
- </html>
- </notes>
- </species>
- <species id="M_man_e" name="D-Mannose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H12O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H12O6</p>
- <p>CHEBI: 4208</p>
- <p>KEGG: C00159</p>
- <p>PUBCHEM: 3459</p>
- </html>
- </notes>
- </species>
- <species id="M_histrna_c" name="L-Histidyl-tRNA-His" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H8N3OR">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H8N3OR</p>
- <p>CHEBI: 29155</p>
- <p>KEGG: C02988</p>
- <p>PUBCHEM: 5897</p>
- </html>
- </notes>
- </species>
- <species id="M_man_c" name="D-Mannose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H12O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H12O6</p>
- <p>CHEBI: 4208</p>
- <p>KEGG: C00159</p>
- <p>PUBCHEM: 3459</p>
- </html>
- </notes>
- </species>
- <species id="M_man_p" name="D-Mannose" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H12O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H12O6</p>
- <p>CHEBI: 4208</p>
- <p>KEGG: C00159</p>
- <p>PUBCHEM: 3459</p>
- </html>
- </notes>
- </species>
- <species id="M_rbl__L_c" name="L-Ribulose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H10O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H10O5</p>
- <p>CHEBI: 16880</p>
- <p>KEGG: C00508</p>
- <p>PUBCHEM: 3791</p>
- </html>
- </notes>
- </species>
- <species id="M_ps180_c" name="phosphatidylserine-dioctadecanoyl-n-C180" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C42H81N1O10P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C42H81N1O10P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C02737</p>
- <p>PUBCHEM: 5698</p>
- </html>
- </notes>
- </species>
- <species id="M_od2coa_c" name="trans-Octadec-2-enoyl-CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H64N7O17P3S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C39H64N7O17P3S</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C16218</p>
- <p>PUBCHEM: 47205526</p>
- </html>
- </notes>
- </species>
- <species id="M_nadph_c" name="Nicotinamide-adenine-dinucleotide-phosphate--reduced" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C21H26N7O17P3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C21H26N7O17P3</p>
- <p>CHEBI: 16474</p>
- <p>KEGG: C00005</p>
- <p>PUBCHEM: 3307</p>
- </html>
- </notes>
- </species>
- <species id="M_3hhdcoa_c" name="S-3-Hydroxyhexadecanoyl-CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H62N7O18P3S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C37H62N7O18P3S</p>
- <p>CHEBI: 27402</p>
- <p>KEGG: C05258</p>
- <p>PUBCHEM: 7645</p>
- </html>
- </notes>
- </species>
- <species id="M_k_p" name="potassium" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="K">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: K</p>
- <p>CHEBI: 29103</p>
- <p>KEGG: C00238</p>
- <p>PUBCHEM: 3537</p>
- </html>
- </notes>
- </species>
- <species id="M_4hoxpacd_p" name="4-Hydroxyphenylacetaldehyde" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C8H8O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C8H8O2</p>
- <p>CHEBI: 15621</p>
- <p>KEGG: C03765</p>
- <p>PUBCHEM: 6521</p>
- </html>
- </notes>
- </species>
- <species id="M_hxcoa_c" name="Hexanoyl-CoA-n-C60CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C27H42N7O17P3S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C27H42N7O17P3S</p>
- <p>CHEBI: 27540</p>
- <p>KEGG: C05270</p>
- <p>PUBCHEM: 7657</p>
- </html>
- </notes>
- </species>
- <species id="M_k_c" name="potassium" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="K">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: K</p>
- <p>CHEBI: 29103</p>
- <p>KEGG: C00238</p>
- <p>PUBCHEM: 3537</p>
- </html>
- </notes>
- </species>
- <species id="M_k_e" name="potassium" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="K">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: K</p>
- <p>CHEBI: 29103</p>
- <p>KEGG: C00238</p>
- <p>PUBCHEM: 3537</p>
- </html>
- </notes>
- </species>
- <species id="M_prolpp_c" name="prolpp_c" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: </p>
- <p>CHEBI: NA</p>
- <p>KEGG: NA</p>
- <p>PUBCHEM: NA</p>
- </html>
- </notes>
- </species>
- <species id="M_4hoxpacd_e" name="4-Hydroxyphenylacetaldehyde" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C8H8O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C8H8O2</p>
- <p>CHEBI: 15621</p>
- <p>KEGG: C03765</p>
- <p>PUBCHEM: 6521</p>
- </html>
- </notes>
- </species>
- <species id="M_dad__5_c" name="5-Deoxyadenosine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C10H13N5O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H13N5O3</p>
- <p>CHEBI: 17319</p>
- <p>KEGG: C05198</p>
- <p>PUBCHEM: 7603</p>
- </html>
- </notes>
- </species>
- <species id="M_colipaOA_e" name="colipaOA_e" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: </p>
- <p>CHEBI: NA</p>
- <p>KEGG: NA</p>
- <p>PUBCHEM: NA</p>
- </html>
- </notes>
- </species>
- <species id="M_no3_c" name="Nitrate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="NO3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: NO3</p>
- <p>CHEBI: 48107</p>
- <p>KEGG: C00244</p>
- <p>PUBCHEM: 3543</p>
- </html>
- </notes>
- </species>
- <species id="M_aicar_c" name="5-Amino-1-5-Phospho-D-ribosyl-imidazole-4-carboxamide" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H13N4O8P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H13N4O8P</p>
- <p>CHEBI: 18406</p>
- <p>KEGG: C04677</p>
- <p>PUBCHEM: 7258</p>
- </html>
- </notes>
- </species>
- <species id="M_dms_e" name="Dimethyl-sulfide" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C2H6S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C2H6S</p>
- <p>CHEBI: 17437</p>
- <p>KEGG: C00580</p>
- <p>PUBCHEM: 3859</p>
- </html>
- </notes>
- </species>
- <species id="M_no3_p" name="Nitrate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="NO3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: NO3</p>
- <p>CHEBI: 48107</p>
- <p>KEGG: C00244</p>
- <p>PUBCHEM: 3543</p>
- </html>
- </notes>
- </species>
- <species id="M_dms_p" name="Dimethyl-sulfide" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C2H6S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C2H6S</p>
- <p>CHEBI: 17437</p>
- <p>KEGG: C00580</p>
- <p>PUBCHEM: 3859</p>
- </html>
- </notes>
- </species>
- <species id="M_trnaval_c" name="tRNA-Val" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="R">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: R</p>
- <p>CHEBI: 29183</p>
- <p>KEGG: C01653</p>
- <p>PUBCHEM: 4802</p>
- </html>
- </notes>
- </species>
- <species id="M_3htdcoa_c" name="S-3-Hydroxytetradecanoyl-CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H58N7O18P3S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C35H58N7O18P3S</p>
- <p>CHEBI: 27466</p>
- <p>KEGG: C05260</p>
- <p>PUBCHEM: 7647</p>
- </html>
- </notes>
- </species>
- <species id="M_2h5cmmusa_c" name="2-Hydroxy-5-carboxymethylmuconate-Semialdehyde" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C8H6O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C8H6O6</p>
- <p>CHEBI: 17142</p>
- <p>KEGG: C04642</p>
- <p>PUBCHEM: 7231</p>
- </html>
- </notes>
- </species>
- <species id="M_3pg_e" name="3-Phospho-D-glycerate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C3H4O7P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H4O7P</p>
- <p>CHEBI: 17794</p>
- <p>KEGG: C00197</p>
- <p>PUBCHEM: 3497</p>
- </html>
- </notes>
- </species>
- <species id="M_3pg_c" name="3-Phospho-D-glycerate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C3H4O7P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H4O7P</p>
- <p>CHEBI: 17794</p>
- <p>KEGG: C00197</p>
- <p>PUBCHEM: 3497</p>
- </html>
- </notes>
- </species>
- <species id="M_23cump_e" name="2-3-Cyclic-UMP" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H10N2O8P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H10N2O8P</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C02355</p>
- <p>PUBCHEM: 5402</p>
- </html>
- </notes>
- </species>
- <species id="M_3pg_p" name="3-Phospho-D-glycerate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C3H4O7P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H4O7P</p>
- <p>CHEBI: 17794</p>
- <p>KEGG: C00197</p>
- <p>PUBCHEM: 3497</p>
- </html>
- </notes>
- </species>
- <species id="M_ap5a_c" name="P1-P5-Bis-5-adenosyl-pentaphosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C20H24N10O22P5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C20H24N10O22P5</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C04058</p>
- <p>PUBCHEM: 6757</p>
- </html>
- </notes>
- </species>
- <species id="M_23cump_p" name="2-3-Cyclic-UMP" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H10N2O8P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H10N2O8P</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C02355</p>
- <p>PUBCHEM: 5402</p>
- </html>
- </notes>
- </species>
- <species id="M_dttp_c" name="dTTP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H13N2O14P3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H13N2O14P3</p>
- <p>CHEBI: 18077</p>
- <p>KEGG: C00459</p>
- <p>PUBCHEM: 3743</p>
- </html>
- </notes>
- </species>
- <species id="M_hhlipa_c" name="heptosyl-heptosyl-kdo2-lipidA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C124H220N2O51P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C124H220N2O51P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_alac__S_c" name="S-2-Acetolactate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H7O4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H7O4</p>
- <p>CHEBI: 18409</p>
- <p>KEGG: C06010</p>
- <p>PUBCHEM: 8282</p>
- </html>
- </notes>
- </species>
- <species id="M_sertrna_c" name="L-Seryl-tRNA-Ser" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C3H6NO2R">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H6NO2R</p>
- <p>CHEBI: 29162</p>
- <p>KEGG: C02553</p>
- <p>PUBCHEM: 5554</p>
- </html>
- </notes>
- </species>
- <species id="M_argsuc_c" name="N-omega--L-Arginino-succinate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H17N4O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H17N4O6</p>
- <p>CHEBI: 15682</p>
- <p>KEGG: C03406</p>
- <p>PUBCHEM: 6235</p>
- </html>
- </notes>
- </species>
- <species id="M_dhpt_c" name="Dihydropteroate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H13N6O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C14H13N6O3</p>
- <p>CHEBI: 4581</p>
- <p>KEGG: C00921</p>
- <p>PUBCHEM: 4175</p>
- </html>
- </notes>
- </species>
- <species id="M_pg2_ST_p" name="pg2_ST_p" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: </p>
- <p>CHEBI: NA</p>
- <p>KEGG: NA</p>
- <p>PUBCHEM: NA</p>
- </html>
- </notes>
- </species>
- <species id="M_unaga_c" name="Undecaprenyl-diphospho-N-acetyl-glucosamine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C63H103NO12P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C63H103NO12P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C01289</p>
- <p>PUBCHEM: 4508</p>
- </html>
- </notes>
- </species>
- <species id="M_trnaile_c" name="tRNA-Ile" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="R">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: R</p>
- <p>CHEBI: 29174</p>
- <p>KEGG: C01644</p>
- <p>PUBCHEM: 4793</p>
- </html>
- </notes>
- </species>
- <species id="M_but_e" name="Butyrate-n-C40" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H7O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H7O2</p>
- <p>CHEBI: 30772</p>
- <p>KEGG: C00246</p>
- <p>PUBCHEM: 3545</p>
- </html>
- </notes>
- </species>
- <species id="M_udpLa4fn_c" name="uridine-5--diphospho-beta-4-deoxy-4-formamido-L-arabinose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C15H21N3O16P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C15H21N3O16P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 17756768</p>
- </html>
- </notes>
- </species>
- <species id="M_uri_p" name="Uridine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C9H12N2O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H12N2O6</p>
- <p>CHEBI: 16704</p>
- <p>KEGG: C00299</p>
- <p>PUBCHEM: 3593</p>
- </html>
- </notes>
- </species>
- <species id="M_glu__D_c" name="D-Glutamate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H8NO4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H8NO4</p>
- <p>CHEBI: 15966</p>
- <p>KEGG: C00217</p>
- <p>PUBCHEM: 3517</p>
- </html>
- </notes>
- </species>
- <species id="M_codscl4_c" name="Cobalt-precorrin-4" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C44H44CoN4O16">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C44H44CoN4O16</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C11540</p>
- <p>PUBCHEM: 13707</p>
- </html>
- </notes>
- </species>
- <species id="M_uri_c" name="Uridine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C9H12N2O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H12N2O6</p>
- <p>CHEBI: 16704</p>
- <p>KEGG: C00299</p>
- <p>PUBCHEM: 3593</p>
- </html>
- </notes>
- </species>
- <species id="M_but_p" name="Butyrate-n-C40" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H7O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H7O2</p>
- <p>CHEBI: 30772</p>
- <p>KEGG: C00246</p>
- <p>PUBCHEM: 3545</p>
- </html>
- </notes>
- </species>
- <species id="M_lac__L_c" name="L-Lactate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H5O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H5O3</p>
- <p>CHEBI: 422</p>
- <p>KEGG: C00186</p>
- <p>PUBCHEM: 3486</p>
- </html>
- </notes>
- </species>
- <species id="M_uri_e" name="Uridine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C9H12N2O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H12N2O6</p>
- <p>CHEBI: 16704</p>
- <p>KEGG: C00299</p>
- <p>PUBCHEM: 3593</p>
- </html>
- </notes>
- </species>
- <species id="M_codscl2_c" name="Cobalt-precorrin-2" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-7" fbc:chemicalFormula="C42H39CoN4O16">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C42H39CoN4O16</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C11538</p>
- <p>PUBCHEM: 13705</p>
- </html>
- </notes>
- </species>
- <species id="M_clpn141_p" name="cardiolipin-tetratetradec-7-enoyl-n-C141" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C65H116O17P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C65H116O17P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C05980</p>
- <p>PUBCHEM: 8259</p>
- </html>
- </notes>
- </species>
- <species id="M_34hpp_c" name="3-4-Hydroxyphenyl-pyruvate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H7O4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H7O4</p>
- <p>CHEBI: 15999</p>
- <p>KEGG: C01179</p>
- <p>PUBCHEM: 4406</p>
- </html>
- </notes>
- </species>
- <species id="M_5aprbu_c" name="5-Amino-6-5-phosphoribitylamino-uracil" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H15N4O9P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H15N4O9P</p>
- <p>CHEBI: 18247</p>
- <p>KEGG: C04454</p>
- <p>PUBCHEM: 7081</p>
- </html>
- </notes>
- </species>
- <species id="M_3ohexACP_c" name="3-Oxohexanoyl-acyl-carrier-protein" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H29N2O9PRS">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C17H29N2O9PRS</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C05746</p>
- <p>PUBCHEM: 8041</p>
- </html>
- </notes>
- </species>
- <species id="M_uacgam_c" name="UDP-N-acetyl-D-glucosamine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C17H25N3O17P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C17H25N3O17P2</p>
- <p>CHEBI: 16264</p>
- <p>KEGG: C00043</p>
- <p>PUBCHEM: 3345</p>
- </html>
- </notes>
- </species>
- <species id="M_cu2_c" name="Cu2" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Cu">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: Cu</p>
- <p>CHEBI: 28694</p>
- <p>KEGG: C00070</p>
- <p>PUBCHEM: 3370</p>
- </html>
- </notes>
- </species>
- <species id="M_3hcinnm_p" name="3-hydroxycinnamic-acid" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H7O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H7O3</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_uacgam_e" name="UDP-N-acetyl-D-glucosamine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C17H25N3O17P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C17H25N3O17P2</p>
- <p>CHEBI: 16264</p>
- <p>KEGG: C00043</p>
- <p>PUBCHEM: 3345</p>
- </html>
- </notes>
- </species>
- <species id="M_cu2_e" name="Cu2" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Cu">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: Cu</p>
- <p>CHEBI: 28694</p>
- <p>KEGG: C00070</p>
- <p>PUBCHEM: 3370</p>
- </html>
- </notes>
- </species>
- <species id="M_fc1p_c" name="L-Fuculose-1-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O8P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H11O8P</p>
- <p>CHEBI: 6220</p>
- <p>KEGG: C01099</p>
- <p>PUBCHEM: 4333</p>
- </html>
- </notes>
- </species>
- <species id="M_cyan_p" name="Hydrogen-cyanide" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="CHN">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: CHN</p>
- <p>CHEBI: 18407</p>
- <p>KEGG: C01326</p>
- <p>PUBCHEM: 4537</p>
- </html>
- </notes>
- </species>
- <species id="M_q8_c" name="Ubiquinone-8" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C49H74O4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C49H74O4</p>
- <p>CHEBI: 16389</p>
- <p>KEGG: C00399</p>
- <p>PUBCHEM: 3689</p>
- </html>
- </notes>
- </species>
- <species id="M_cu2_p" name="Cu2" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Cu">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: Cu</p>
- <p>CHEBI: 28694</p>
- <p>KEGG: C00070</p>
- <p>PUBCHEM: 3370</p>
- </html>
- </notes>
- </species>
- <species id="M_uacgam_p" name="UDP-N-acetyl-D-glucosamine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C17H25N3O17P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C17H25N3O17P2</p>
- <p>CHEBI: 16264</p>
- <p>KEGG: C00043</p>
- <p>PUBCHEM: 3345</p>
- </html>
- </notes>
- </species>
- <species id="M_rhcys_c" name="S-Ribosyl-L-homocysteine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C9H17NO6S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H17NO6S</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C03539</p>
- <p>PUBCHEM: 6343</p>
- </html>
- </notes>
- </species>
- <species id="M_anhgm3p_c" name="N-Acetyl-D-glucosamine-anhydrous-N-Acetylmuramyl-tripeptide" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C34H52N6O19">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C34H52N6O19</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_cyan_e" name="Hydrogen-cyanide" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="CHN">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: CHN</p>
- <p>CHEBI: 18407</p>
- <p>KEGG: C01326</p>
- <p>PUBCHEM: 4537</p>
- </html>
- </notes>
- </species>
- <species id="M_grdp_c" name="Geranyl-diphosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H17O7P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H17O7P2</p>
- <p>CHEBI: 17211</p>
- <p>KEGG: C00341</p>
- <p>PUBCHEM: 3634</p>
- </html>
- </notes>
- </species>
- <species id="M_cyan_c" name="Hydrogen-cyanide" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="CHN">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: CHN</p>
- <p>CHEBI: 18407</p>
- <p>KEGG: C01326</p>
- <p>PUBCHEM: 4537</p>
- </html>
- </notes>
- </species>
- <species id="M_pg161_p" name="Phosphatidylglycerol-dihexadec-9-enoyl-n-C161" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C38H70O10P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C38H70O10P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C00344</p>
- <p>PUBCHEM: 3637</p>
- </html>
- </notes>
- </species>
- <species id="M_dpcoa_c" name="Dephospho-CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H33N7O13P2S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C21H33N7O13P2S</p>
- <p>CHEBI: 15468</p>
- <p>KEGG: C00882</p>
- <p>PUBCHEM: 4138</p>
- </html>
- </notes>
- </species>
- <species id="M_dtdp_c" name="dTDP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H13N2O11P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H13N2O11P2</p>
- <p>CHEBI: 18075</p>
- <p>KEGG: C00363</p>
- <p>PUBCHEM: 3654</p>
- </html>
- </notes>
- </species>
- <species id="M_pg161_c" name="Phosphatidylglycerol-dihexadec-9-enoyl-n-C161" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C38H70O10P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C38H70O10P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C00344</p>
- <p>PUBCHEM: 3637</p>
- </html>
- </notes>
- </species>
- <species id="M_palmACP_c" name="Palmitoyl-ACP-n-C160ACP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C27H51N2O8PRS">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C27H51N2O8PRS</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C05764</p>
- <p>PUBCHEM: 8059</p>
- </html>
- </notes>
- </species>
- <species id="M_ins_p" name="Inosine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C10H12N4O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H12N4O5</p>
- <p>CHEBI: 17596</p>
- <p>KEGG: C00294</p>
- <p>PUBCHEM: 3588</p>
- </html>
- </notes>
- </species>
- <species id="M_udcdp7Oag_p" name="Undecaprenyl-diphosphate-O-antigene-7x" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C223H370O126P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C223H370O126P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_nicrnt_c" name="Nicotinate-D-ribonucleotide" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C11H12NO9P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C11H12NO9P</p>
- <p>CHEBI: 15763</p>
- <p>KEGG: C01185</p>
- <p>PUBCHEM: 4411</p>
- </html>
- </notes>
- </species>
- <species id="M_3hcinnm_e" name="3-hydroxycinnamic-acid" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H7O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H7O3</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_salchsx_c" name="Salmochelin-SX" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H20N1O11">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C16H20N1O11</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_salchsx_e" name="Salmochelin-SX" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H20N1O11">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C16H20N1O11</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_lyx__L_e" name="L-Lyxose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H10O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H10O5</p>
- <p>CHEBI: 28480</p>
- <p>KEGG: C01508</p>
- <p>PUBCHEM: 4676</p>
- </html>
- </notes>
- </species>
- <species id="M_acon__C_e" name="cis-Aconitate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H3O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H3O6</p>
- <p>CHEBI: 32805</p>
- <p>KEGG: C00417</p>
- <p>PUBCHEM: 3707</p>
- </html>
- </notes>
- </species>
- <species id="M_ala__D_p" name="D-Alanine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H7NO2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H7NO2</p>
- <p>CHEBI: 15570</p>
- <p>KEGG: C00133</p>
- <p>PUBCHEM: 3433</p>
- </html>
- </notes>
- </species>
- <species id="M_mercppyr_c" name="Mercaptopyruvate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H3O3S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H3O3S</p>
- <p>CHEBI: 16208</p>
- <p>KEGG: C00957</p>
- <p>PUBCHEM: 4208</p>
- </html>
- </notes>
- </species>
- <species id="M_kdo2lipid4L_c" name="KDO-2-lipid-IV-A-with-laurate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C96H170N2O38P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C96H170N2O38P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C06251</p>
- <p>PUBCHEM: 8490</p>
- </html>
- </notes>
- </species>
- <species id="M_ala__D_e" name="D-Alanine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H7NO2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H7NO2</p>
- <p>CHEBI: 15570</p>
- <p>KEGG: C00133</p>
- <p>PUBCHEM: 3433</p>
- </html>
- </notes>
- </species>
- <species id="M_ala__D_c" name="D-Alanine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H7NO2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H7NO2</p>
- <p>CHEBI: 15570</p>
- <p>KEGG: C00133</p>
- <p>PUBCHEM: 3433</p>
- </html>
- </notes>
- </species>
- <species id="M_asntrna_c" name="L-Asparaginyl-tRNA-Asn" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C14H23N2O12PR2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C14H23N2O12PR2</p>
- <p>CHEBI: 29265</p>
- <p>KEGG: C03402</p>
- <p>PUBCHEM: 6232</p>
- </html>
- </notes>
- </species>
- <species id="M_hxa_p" name="Hexanoate-n-C60" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H11O2</p>
- <p>CHEBI: 30776</p>
- <p>KEGG: C01585</p>
- <p>PUBCHEM: 4740</p>
- </html>
- </notes>
- </species>
- <species id="M_udpgal_p" name="UDPgalactose" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C15H22N2O17P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C15H22N2O17P2</p>
- <p>CHEBI: 18307</p>
- <p>KEGG: C00052</p>
- <p>PUBCHEM: 3354</p>
- </html>
- </notes>
- </species>
- <species id="M_pap_c" name="Adenosine-3-5-bisphosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H11N5O10P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H11N5O10P2</p>
- <p>CHEBI: 17985</p>
- <p>KEGG: C00054</p>
- <p>PUBCHEM: 3356</p>
- </html>
- </notes>
- </species>
- <species id="M_ins_c" name="Inosine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C10H12N4O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H12N4O5</p>
- <p>CHEBI: 17596</p>
- <p>KEGG: C00294</p>
- <p>PUBCHEM: 3588</p>
- </html>
- </notes>
- </species>
- <species id="M_lipidAds_c" name="Lipid-A-Disaccharide" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C68H127N2O20P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C68H127N2O20P</p>
- <p>CHEBI: 18380</p>
- <p>KEGG: C04932</p>
- <p>PUBCHEM: 7476</p>
- </html>
- </notes>
- </species>
- <species id="M_udpgal_c" name="UDPgalactose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C15H22N2O17P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C15H22N2O17P2</p>
- <p>CHEBI: 18307</p>
- <p>KEGG: C00052</p>
- <p>PUBCHEM: 3354</p>
- </html>
- </notes>
- </species>
- <species id="M_hxa_c" name="Hexanoate-n-C60" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H11O2</p>
- <p>CHEBI: 30776</p>
- <p>KEGG: C01585</p>
- <p>PUBCHEM: 4740</p>
- </html>
- </notes>
- </species>
- <species id="M_hxa_e" name="Hexanoate-n-C60" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H11O2</p>
- <p>CHEBI: 30776</p>
- <p>KEGG: C01585</p>
- <p>PUBCHEM: 4740</p>
- </html>
- </notes>
- </species>
- <species id="M_udpgal_e" name="UDPgalactose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C15H22N2O17P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C15H22N2O17P2</p>
- <p>CHEBI: 18307</p>
- <p>KEGG: C00052</p>
- <p>PUBCHEM: 3354</p>
- </html>
- </notes>
- </species>
- <species id="M_acac_p" name="Acetoacetate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H5O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H5O3</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C00164</p>
- <p>PUBCHEM: 3464</p>
- </html>
- </notes>
- </species>
- <species id="M_adprib_c" name="ADPribose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C15H21N5O14P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C15H21N5O14P2</p>
- <p>CHEBI: 16960</p>
- <p>KEGG: C00301</p>
- <p>PUBCHEM: 3595</p>
- </html>
- </notes>
- </species>
- <species id="M_t3c7mrseACP_c" name="trans-3-cis-7-myristoleoyl-acyl-carrier-protein" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C25H43N2O8PRS">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C25H43N2O8PRS</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_adcobn_c" name="Adenosylcobyric-acid" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C55H76CoN15O11">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C55H76CoN15O11</p>
- <p>CHEBI: 2483</p>
- <p>KEGG: C06507</p>
- <p>PUBCHEM: 8738</p>
- </html>
- </notes>
- </species>
- <species id="M_acac_e" name="Acetoacetate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H5O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H5O3</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C00164</p>
- <p>PUBCHEM: 3464</p>
- </html>
- </notes>
- </species>
- <species id="M_lipidA_c" name="2-3-2-3-Tetrakis-beta-hydroxymyristoyl-D-glucosaminyl-1-6-beta-D-glucosamine-1-4-bisphosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C68H126N2O23P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C68H126N2O23P2</p>
- <p>CHEBI: 18380</p>
- <p>KEGG: C04932</p>
- <p>PUBCHEM: 7476</p>
- </html>
- </notes>
- </species>
- <species id="M_acser_c" name="O-Acetyl-L-serine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H9NO4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H9NO4</p>
- <p>CHEBI: 17981</p>
- <p>KEGG: C00979</p>
- <p>PUBCHEM: 4228</p>
- </html>
- </notes>
- </species>
- <species id="M_pg120_p" name="Phosphatidylglycerol-didodecanoyl-n-C120" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H58O10P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C30H58O10P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C00344</p>
- <p>PUBCHEM: 3637</p>
- </html>
- </notes>
- </species>
- <species id="M_acser_e" name="O-Acetyl-L-serine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H9NO4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H9NO4</p>
- <p>CHEBI: 17981</p>
- <p>KEGG: C00979</p>
- <p>PUBCHEM: 4228</p>
- </html>
- </notes>
- </species>
- <species id="M_galct__D_p" name="D-Galactarate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H8O8">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H8O8</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C00879</p>
- <p>PUBCHEM: 4135</p>
- </html>
- </notes>
- </species>
- <species id="M_pep_c" name="Phosphoenolpyruvate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C3H2O6P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H2O6P</p>
- <p>CHEBI: 18021 44897</p>
- <p>KEGG: C00074</p>
- <p>PUBCHEM: 3374</p>
- </html>
- </notes>
- </species>
- <species id="M_pep_e" name="Phosphoenolpyruvate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C3H2O6P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H2O6P</p>
- <p>CHEBI: 18021 44897</p>
- <p>KEGG: C00074</p>
- <p>PUBCHEM: 3374</p>
- </html>
- </notes>
- </species>
- <species id="M_pg120_c" name="Phosphatidylglycerol-didodecanoyl-n-C120" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H58O10P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C30H58O10P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C00344</p>
- <p>PUBCHEM: 3637</p>
- </html>
- </notes>
- </species>
- <species id="M_3hcpalm9eACP_c" name="R-3-hydroxy-cis-palm-9-eoyl-acyl-carrier-protein" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C27H49N2O9PRS">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C27H49N2O9PRS</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_galct__D_e" name="D-Galactarate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H8O8">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H8O8</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C00879</p>
- <p>PUBCHEM: 4135</p>
- </html>
- </notes>
- </species>
- <species id="M_galct__D_c" name="D-Galactarate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H8O8">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H8O8</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C00879</p>
- <p>PUBCHEM: 4135</p>
- </html>
- </notes>
- </species>
- <species id="M_ppgpp_c" name="Guanosine-3-5-bis-diphosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C10H11N5O17P4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H11N5O17P4</p>
- <p>CHEBI: 17633</p>
- <p>KEGG: C01228</p>
- <p>PUBCHEM: 4450</p>
- </html>
- </notes>
- </species>
- <species id="M_trnacys_c" name="tRNA-Cys" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="R">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: R</p>
- <p>CHEBI: 29167</p>
- <p>KEGG: C01639</p>
- <p>PUBCHEM: 4788</p>
- </html>
- </notes>
- </species>
- <species id="M_salchs1_c" name="salchs1_c" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: </p>
- <p>CHEBI: NA</p>
- <p>KEGG: NA</p>
- <p>PUBCHEM: NA</p>
- </html>
- </notes>
- </species>
- <species id="M_so2_e" name="sulfur-dioxide" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="O2S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: O2S</p>
- <p>CHEBI: 18422</p>
- <p>KEGG: C09306</p>
- <p>PUBCHEM: 11497</p>
- </html>
- </notes>
- </species>
- <species id="M_hdcoa_c" name="Hexadecenoyl-CoA-n-C161CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H60N7O17P3S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C37H60N7O17P3S</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_malt_p" name="Maltose" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C12H22O11">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C12H22O11</p>
- <p>CHEBI: 17306</p>
- <p>KEGG: C00208</p>
- <p>PUBCHEM: 3508</p>
- </html>
- </notes>
- </species>
- <species id="M_glyald_e" name="D-Glyceraldehyde" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H6O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H6O3</p>
- <p>CHEBI: 17378</p>
- <p>KEGG: C00577</p>
- <p>PUBCHEM: 3856</p>
- </html>
- </notes>
- </species>
- <species id="M_glyald_c" name="D-Glyceraldehyde" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H6O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H6O3</p>
- <p>CHEBI: 17378</p>
- <p>KEGG: C00577</p>
- <p>PUBCHEM: 3856</p>
- </html>
- </notes>
- </species>
- <species id="M_malt_c" name="Maltose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C12H22O11">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C12H22O11</p>
- <p>CHEBI: 17306</p>
- <p>KEGG: C00208</p>
- <p>PUBCHEM: 3508</p>
- </html>
- </notes>
- </species>
- <species id="M_malt_e" name="Maltose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C12H22O11">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C12H22O11</p>
- <p>CHEBI: 17306</p>
- <p>KEGG: C00208</p>
- <p>PUBCHEM: 3508</p>
- </html>
- </notes>
- </species>
- <species id="M_glyald_p" name="D-Glyceraldehyde" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H6O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H6O3</p>
- <p>CHEBI: 17378</p>
- <p>KEGG: C00577</p>
- <p>PUBCHEM: 3856</p>
- </html>
- </notes>
- </species>
- <species id="M_cystrna_c" name="L-Cysteinyl-tRNA-Cys" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C3H6NOSR">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H6NOSR</p>
- <p>CHEBI: 29152</p>
- <p>KEGG: C03125</p>
- <p>PUBCHEM: 6018</p>
- </html>
- </notes>
- </species>
- <species id="M_udcpg_c" name="udcpg_c" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: </p>
- <p>CHEBI: 16046</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 7121</p>
- </html>
- </notes>
- </species>
- <species id="M_taur_e" name="Taurine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C2H7NO3S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C2H7NO3S</p>
- <p>CHEBI: 15891</p>
- <p>KEGG: C00245</p>
- <p>PUBCHEM: 3544</p>
- </html>
- </notes>
- </species>
- <species id="M_peamn_p" name="Phenethylamine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C8H12N">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C8H12N</p>
- <p>CHEBI: 18397</p>
- <p>KEGG: C05332</p>
- <p>PUBCHEM: 7711</p>
- </html>
- </notes>
- </species>
- <species id="M_tartr__D_p" name="D-tartrate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H4O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H4O6</p>
- <p>CHEBI: 15672</p>
- <p>KEGG: C02107</p>
- <p>PUBCHEM: 5189</p>
- </html>
- </notes>
- </species>
- <species id="M_dxyl5p_c" name="1-deoxy-D-xylulose-5-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H9O7P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H9O7P</p>
- <p>CHEBI: 16493</p>
- <p>KEGG: C11437</p>
- <p>PUBCHEM: 13609</p>
- </html>
- </notes>
- </species>
- <species id="M_s7p_c" name="Sedoheptulose-7-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C7H13O10P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C7H13O10P</p>
- <p>CHEBI: 15721</p>
- <p>KEGG: C00281</p>
- <p>PUBCHEM: 3576</p>
- </html>
- </notes>
- </species>
- <species id="M_peamn_e" name="Phenethylamine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C8H12N">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C8H12N</p>
- <p>CHEBI: 18397</p>
- <p>KEGG: C05332</p>
- <p>PUBCHEM: 7711</p>
- </html>
- </notes>
- </species>
- <species id="M_taur_p" name="Taurine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C2H7NO3S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C2H7NO3S</p>
- <p>CHEBI: 15891</p>
- <p>KEGG: C00245</p>
- <p>PUBCHEM: 3544</p>
- </html>
- </notes>
- </species>
- <species id="M_lys__L_e" name="L-Lysine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H15N2O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H15N2O2</p>
- <p>CHEBI: 18019</p>
- <p>KEGG: C00047</p>
- <p>PUBCHEM: 3349</p>
- </html>
- </notes>
- </species>
- <species id="M_2odec11eg3p_p" name="2-octadec-11-enoyl-sn-glycerol-3-phosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H40O7P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C21H40O7P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C03974</p>
- <p>PUBCHEM: 6693</p>
- </html>
- </notes>
- </species>
- <species id="M_metsox__R__L_p" name="L-methionine-R-sulfoxide" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H11NO3S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H11NO3S</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 847</p>
- </html>
- </notes>
- </species>
- <species id="M_apg160_c" name="acyl-phosphatidylglycerol-n-C160" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C54H104O11P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C54H104O11P</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_inost_p" name="myo-Inositol" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H12O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H12O6</p>
- <p>CHEBI: 17268</p>
- <p>KEGG: C00137</p>
- <p>PUBCHEM: 3437</p>
- </html>
- </notes>
- </species>
- <species id="M_lys__L_p" name="L-Lysine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H15N2O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H15N2O2</p>
- <p>CHEBI: 18019</p>
- <p>KEGG: C00047</p>
- <p>PUBCHEM: 3349</p>
- </html>
- </notes>
- </species>
- <species id="M_inost_e" name="myo-Inositol" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H12O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H12O6</p>
- <p>CHEBI: 17268</p>
- <p>KEGG: C00137</p>
- <p>PUBCHEM: 3437</p>
- </html>
- </notes>
- </species>
- <species id="M_inost_c" name="myo-Inositol" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H12O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H12O6</p>
- <p>CHEBI: 17268</p>
- <p>KEGG: C00137</p>
- <p>PUBCHEM: 3437</p>
- </html>
- </notes>
- </species>
- <species id="M_thdp_c" name="2-3-4-5-Tetrahydrodipicolinate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C7H7NO4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C7H7NO4</p>
- <p>CHEBI: 864</p>
- <p>KEGG: C03972</p>
- <p>PUBCHEM: 6692</p>
- </html>
- </notes>
- </species>
- <species id="M_udcdpgalrmnmanabe_c" name="Undecaprenyl-diphosphate-galactose-rhamnose-mannose-abequose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C79H130O24P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C79H130O24P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_4abutn_c" name="4-Aminobutanal" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C4H10NO">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H10NO</p>
- <p>CHEBI: 17769</p>
- <p>KEGG: C00555</p>
- <p>PUBCHEM: 3835</p>
- </html>
- </notes>
- </species>
- <species id="M_udpglcur_e" name="UDP-D-glucuronate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C15H19N2O18P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C15H19N2O18P2</p>
- <p>CHEBI: 17200</p>
- <p>KEGG: C00167</p>
- <p>PUBCHEM: 3467</p>
- </html>
- </notes>
- </species>
- <species id="M_udpglcur_c" name="UDP-D-glucuronate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C15H19N2O18P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C15H19N2O18P2</p>
- <p>CHEBI: 17200</p>
- <p>KEGG: C00167</p>
- <p>PUBCHEM: 3467</p>
- </html>
- </notes>
- </species>
- <species id="M_acanth_c" name="N-Acetylanthranilate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H8NO3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H8NO3</p>
- <p>CHEBI: 16803</p>
- <p>KEGG: C06332</p>
- <p>PUBCHEM: 8568</p>
- </html>
- </notes>
- </species>
- <species id="M_12ppd__R_e" name="R-Propane-1-2-diol" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H8O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H8O2</p>
- <p>CHEBI: 28972</p>
- <p>KEGG: C02912</p>
- <p>PUBCHEM: 5836</p>
- </html>
- </notes>
- </species>
- <species id="M_12ppd__R_c" name="R-Propane-1-2-diol" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H8O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H8O2</p>
- <p>CHEBI: 28972</p>
- <p>KEGG: C02912</p>
- <p>PUBCHEM: 5836</p>
- </html>
- </notes>
- </species>
- <species id="M_2p4c2me_c" name="2-phospho-4-cytidine-5-diphospho-2-C-methyl-D-erythritol" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C14H22N3O17P3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C14H22N3O17P3</p>
- <p>CHEBI: 16840</p>
- <p>KEGG: C11436</p>
- <p>PUBCHEM: 13608</p>
- </html>
- </notes>
- </species>
- <species id="M_udpglcur_p" name="UDP-D-glucuronate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C15H19N2O18P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C15H19N2O18P2</p>
- <p>CHEBI: 17200</p>
- <p>KEGG: C00167</p>
- <p>PUBCHEM: 3467</p>
- </html>
- </notes>
- </species>
- <species id="M_2agpe181_c" name="2-Acyl-sn-glycero-3-phosphoethanolamine-n-C181" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C23H46NO7P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C23H46NO7P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C05973</p>
- <p>PUBCHEM: 8253</p>
- </html>
- </notes>
- </species>
- <species id="M_progly_e" name="L-Prolinylglycine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C7H12N2O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C7H12N2O3</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_2dda7p_c" name="2-Dehydro-3-deoxy-D-arabino-heptonate-7-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C7H10O10P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C7H10O10P</p>
- <p>CHEBI: 18150</p>
- <p>KEGG: C04691</p>
- <p>PUBCHEM: 7271</p>
- </html>
- </notes>
- </species>
- <species id="M_h2mb4p_c" name="1-hydroxy-2-methyl-2-E-butenyl-4-diphosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C5H9O8P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H9O8P2</p>
- <p>CHEBI: 15664</p>
- <p>KEGG: C11811</p>
- <p>PUBCHEM: 13975</p>
- </html>
- </notes>
- </species>
- <species id="M_progly_c" name="L-Prolinylglycine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C7H12N2O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C7H12N2O3</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_23dhmp_c" name="R-2-3-Dihydroxy-3-methylpentanoate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H11O4</p>
- <p>CHEBI: 27512 49258</p>
- <p>KEGG: C06007</p>
- <p>PUBCHEM: 8280</p>
- </html>
- </notes>
- </species>
- <species id="M_gdpfuc_c" name="GDP-L-fucose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C16H23N5O15P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C16H23N5O15P2</p>
- <p>CHEBI: 17009</p>
- <p>KEGG: C00325</p>
- <p>PUBCHEM: 3619</p>
- </html>
- </notes>
- </species>
- <species id="M_2agpe181_p" name="2-Acyl-sn-glycero-3-phosphoethanolamine-n-C181" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C23H46NO7P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C23H46NO7P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C05973</p>
- <p>PUBCHEM: 8253</p>
- </html>
- </notes>
- </species>
- <species id="M_phhlipa_c" name="phospho-heptosyl-heptosyl-kdo2-lipidA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C124H219N2O54P3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C124H219N2O54P3</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_progly_p" name="L-Prolinylglycine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C7H12N2O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C7H12N2O3</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_for_p" name="Formate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CH1O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: CH1O2</p>
- <p>CHEBI: 30751</p>
- <p>KEGG: C00058</p>
- <p>PUBCHEM: 3358</p>
- </html>
- </notes>
- </species>
- <species id="M_duri_e" name="Deoxyuridine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C9H12N2O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H12N2O5</p>
- <p>CHEBI: 16450</p>
- <p>KEGG: C00526</p>
- <p>PUBCHEM: 3809</p>
- </html>
- </notes>
- </species>
- <species id="M_tmrs2eACP_c" name="trans-Tetradec-2-enoyl-acyl-carrier-protein" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C25H45N2O8PRS">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C25H45N2O8PRS</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C05760</p>
- <p>PUBCHEM: 8055</p>
- </html>
- </notes>
- </species>
- <species id="M_23dhbzs_c" name="2-3-dihydroxybenzoylserine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H10NO6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H10NO6</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C04204</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_duri_c" name="Deoxyuridine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C9H12N2O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H12N2O5</p>
- <p>CHEBI: 16450</p>
- <p>KEGG: C00526</p>
- <p>PUBCHEM: 3809</p>
- </html>
- </notes>
- </species>
- <species id="M_tyrp_e" name="Phosphotyrosine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H10NO6P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H10NO6P</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C06501</p>
- <p>PUBCHEM: 8732</p>
- </html>
- </notes>
- </species>
- <species id="M_for_e" name="Formate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CH1O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: CH1O2</p>
- <p>CHEBI: 30751</p>
- <p>KEGG: C00058</p>
- <p>PUBCHEM: 3358</p>
- </html>
- </notes>
- </species>
- <species id="M_for_c" name="Formate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CH1O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: CH1O2</p>
- <p>CHEBI: 30751</p>
- <p>KEGG: C00058</p>
- <p>PUBCHEM: 3358</p>
- </html>
- </notes>
- </species>
- <species id="M_duri_p" name="Deoxyuridine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C9H12N2O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H12N2O5</p>
- <p>CHEBI: 16450</p>
- <p>KEGG: C00526</p>
- <p>PUBCHEM: 3809</p>
- </html>
- </notes>
- </species>
- <species id="M_udpacgal_p" name="UDP-N-acetyl-D-galactosamine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C17H25N3O17P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C17H25N3O17P2</p>
- <p>CHEBI: 16650</p>
- <p>KEGG: C00203</p>
- <p>PUBCHEM: 3503</p>
- </html>
- </notes>
- </species>
- <species id="M_airs_c" name="Aminoimidazole-riboside" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C8H13N3O4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C8H13N3O4</p>
- <p>CHEBI: 0</p>
- <p>KEGG: phosphorylated version of C03373</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_airs_e" name="Aminoimidazole-riboside" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C8H13N3O4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C8H13N3O4</p>
- <p>CHEBI: 0</p>
- <p>KEGG: phosphorylated version of C03373</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_udpacgal_e" name="UDP-N-acetyl-D-galactosamine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C17H25N3O17P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C17H25N3O17P2</p>
- <p>CHEBI: 16650</p>
- <p>KEGG: C00203</p>
- <p>PUBCHEM: 3503</p>
- </html>
- </notes>
- </species>
- <species id="M_gmhep7p_c" name="D-Glycero-D-manno-heptose-7-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C7H13O10P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C7H13O10P</p>
- <p>CHEBI: 28723</p>
- <p>KEGG: C07836</p>
- <p>PUBCHEM: 10038</p>
- </html>
- </notes>
- </species>
- <species id="M_alatrna_c" name="L-Alanyl-tRNA-Ala" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C3H6NOR">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H6NOR</p>
- <p>CHEBI: 17732</p>
- <p>KEGG: C00886</p>
- <p>PUBCHEM: 4142</p>
- </html>
- </notes>
- </species>
- <species id="M_airs_p" name="Aminoimidazole-riboside" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C8H13N3O4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C8H13N3O4</p>
- <p>CHEBI: 0</p>
- <p>KEGG: phosphorylated version of C03373</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_cob1nda_c" name="Cob-I-yrinate-a-c-diamide" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C45H56CoN6O12">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C45H56CoN6O12</p>
- <p>CHEBI: 28531</p>
- <p>KEGG: C06505</p>
- <p>PUBCHEM: 8736</p>
- </html>
- </notes>
- </species>
- <species id="M_nadp_c" name="Nicotinamide-adenine-dinucleotide-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C21H25N7O17P3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C21H25N7O17P3</p>
- <p>CHEBI: 18009</p>
- <p>KEGG: C00006</p>
- <p>PUBCHEM: 3308</p>
- </html>
- </notes>
- </species>
- <species id="M_uLa4fn_c" name="undecaprenyl-phosphate-4-amino-4-formyl-L-arabinose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C61H99N1O8P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C61H99N1O8P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_sucarg_c" name="N2-Succinyl-L-arginine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H17N4O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H17N4O5</p>
- <p>CHEBI: 17705</p>
- <p>KEGG: C03296</p>
- <p>PUBCHEM: 6152</p>
- </html>
- </notes>
- </species>
- <species id="M_cysi__L_c" name="L-Cystine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H12N2O4S2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H12N2O4S2</p>
- <p>CHEBI: 16283</p>
- <p>KEGG: C00491</p>
- <p>PUBCHEM: 3774</p>
- </html>
- </notes>
- </species>
- <species id="M_dgmp_e" name="dGMP" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O7P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H12N5O7P</p>
- <p>CHEBI: 16192</p>
- <p>KEGG: C00362</p>
- <p>PUBCHEM: 3653</p>
- </html>
- </notes>
- </species>
- <species id="M_dmlz_c" name="6-7-Dimethyl-8-1-D-ribityl-lumazine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C13H18N4O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C13H18N4O6</p>
- <p>CHEBI: 17601</p>
- <p>KEGG: C04332</p>
- <p>PUBCHEM: 6983</p>
- </html>
- </notes>
- </species>
- <species id="M_dgmp_c" name="dGMP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O7P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H12N5O7P</p>
- <p>CHEBI: 16192</p>
- <p>KEGG: C00362</p>
- <p>PUBCHEM: 3653</p>
- </html>
- </notes>
- </species>
- <species id="M_cysi__L_e" name="L-Cystine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H12N2O4S2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H12N2O4S2</p>
- <p>CHEBI: 16283</p>
- <p>KEGG: C00491</p>
- <p>PUBCHEM: 3774</p>
- </html>
- </notes>
- </species>
- <species id="M_glyc2p_p" name="Glycerol-2-phosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H7O6P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H7O6P</p>
- <p>CHEBI: 17270</p>
- <p>KEGG: C02979</p>
- <p>PUBCHEM: 5889</p>
- </html>
- </notes>
- </species>
- <species id="M_thmpp_c" name="Thiamine-diphosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C12H16N4O7P2S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C12H16N4O7P2S</p>
- <p>CHEBI: 9532</p>
- <p>KEGG: C00068</p>
- <p>PUBCHEM: 3368</p>
- </html>
- </notes>
- </species>
- <species id="M_cysi__L_p" name="L-Cystine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H12N2O4S2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H12N2O4S2</p>
- <p>CHEBI: 16283</p>
- <p>KEGG: C00491</p>
- <p>PUBCHEM: 3774</p>
- </html>
- </notes>
- </species>
- <species id="M_dhor__S_c" name="S-Dihydroorotate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H5N2O4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H5N2O4</p>
- <p>CHEBI: 17025</p>
- <p>KEGG: C00337</p>
- <p>PUBCHEM: 3630</p>
- </html>
- </notes>
- </species>
- <species id="M_dgmp_p" name="dGMP" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O7P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H12N5O7P</p>
- <p>CHEBI: 16192</p>
- <p>KEGG: C00362</p>
- <p>PUBCHEM: 3653</p>
- </html>
- </notes>
- </species>
- <species id="M_foam_p" name="Formamide" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="CH3NO">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: CH3NO</p>
- <p>CHEBI: 16397</p>
- <p>KEGG: C00488</p>
- <p>PUBCHEM: 3771</p>
- </html>
- </notes>
- </species>
- <species id="M_kdo8p_c" name="3-Deoxy-D-manno-octulosonate-8-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C8H12O11P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C8H12O11P</p>
- <p>CHEBI: 18069</p>
- <p>KEGG: C04478</p>
- <p>PUBCHEM: 7098</p>
- </html>
- </notes>
- </species>
- <species id="M_hom__L_p" name="L-Homoserine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C4H9NO3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H9NO3</p>
- <p>CHEBI: 15699</p>
- <p>KEGG: C00263</p>
- <p>PUBCHEM: 3561</p>
- </html>
- </notes>
- </species>
- <species id="M_f6p_c" name="D-Fructose-6-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H11O9P</p>
- <p>CHEBI: 15946</p>
- <p>KEGG: C00085</p>
- <p>PUBCHEM: 3385</p>
- </html>
- </notes>
- </species>
- <species id="M_hom__L_c" name="L-Homoserine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C4H9NO3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H9NO3</p>
- <p>CHEBI: 15699</p>
- <p>KEGG: C00263</p>
- <p>PUBCHEM: 3561</p>
- </html>
- </notes>
- </species>
- <species id="M_um4p_c" name="UDP-N-acetylmuramoyl-L-alanyl-D-gamma-glutamyl-meso-2-6-diaminopimelate-D-alanine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C38H56N8O27P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C38H56N8O27P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_foam_c" name="Formamide" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="CH3NO">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: CH3NO</p>
- <p>CHEBI: 16397</p>
- <p>KEGG: C00488</p>
- <p>PUBCHEM: 3771</p>
- </html>
- </notes>
- </species>
- <species id="M_f6p_p" name="D-Fructose-6-phosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H11O9P</p>
- <p>CHEBI: 15946</p>
- <p>KEGG: C00085</p>
- <p>PUBCHEM: 3385</p>
- </html>
- </notes>
- </species>
- <species id="M_foam_e" name="Formamide" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="CH3NO">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: CH3NO</p>
- <p>CHEBI: 16397</p>
- <p>KEGG: C00488</p>
- <p>PUBCHEM: 3771</p>
- </html>
- </notes>
- </species>
- <species id="M_hom__L_e" name="L-Homoserine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C4H9NO3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H9NO3</p>
- <p>CHEBI: 15699</p>
- <p>KEGG: C00263</p>
- <p>PUBCHEM: 3561</p>
- </html>
- </notes>
- </species>
- <species id="M_nadh_c" name="Nicotinamide-adenine-dinucleotide--reduced" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H27N7O14P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C21H27N7O14P2</p>
- <p>CHEBI: 16908</p>
- <p>KEGG: C00004</p>
- <p>PUBCHEM: 3306</p>
- </html>
- </notes>
- </species>
- <species id="M_ocACP_c" name="Octanoyl-ACP-n-C80ACP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H35N2O8PRS">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C19H35N2O8PRS</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C05752</p>
- <p>PUBCHEM: 8047</p>
- </html>
- </notes>
- </species>
- <species id="M_mi1p__D_c" name="1D-myo-Inositol-1-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H11O9P</p>
- <p>CHEBI: 18297</p>
- <p>KEGG: C01177</p>
- <p>PUBCHEM: 4404</p>
- </html>
- </notes>
- </species>
- <species id="M_12dgr140_p" name="1-2-Diacyl-sn-glycerol-ditetradecanoyl-n-C140" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C31H60O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C31H60O5</p>
- <p>CHEBI: 17815</p>
- <p>KEGG: C00641</p>
- <p>PUBCHEM: 3914</p>
- </html>
- </notes>
- </species>
- <species id="M_trnaglu_c" name="tRNA-Glu" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="R">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: R</p>
- <p>CHEBI: 29175</p>
- <p>KEGG: C01641</p>
- <p>PUBCHEM: 4790</p>
- </html>
- </notes>
- </species>
- <species id="M_12dgr140_c" name="1-2-Diacyl-sn-glycerol-ditetradecanoyl-n-C140" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C31H60O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C31H60O5</p>
- <p>CHEBI: 17815</p>
- <p>KEGG: C00641</p>
- <p>PUBCHEM: 3914</p>
- </html>
- </notes>
- </species>
- <species id="M_pant__R_c" name="R-Pantoate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H11O4</p>
- <p>CHEBI: 14737 15980</p>
- <p>KEGG: C00522</p>
- <p>PUBCHEM: 3805</p>
- </html>
- </notes>
- </species>
- <species id="M_dopa_e" name="Dopamine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C8H12NO2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C8H12NO2</p>
- <p>CHEBI: 18243</p>
- <p>KEGG: C03758</p>
- <p>PUBCHEM: 6517</p>
- </html>
- </notes>
- </species>
- <species id="M_1ddecg3p_p" name="1-dodecanoyl-sn-glycerol-3-phosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C15H29O7P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C15H29O7P1</p>
- <p>CHEBI: 16975</p>
- <p>KEGG: C00681</p>
- <p>PUBCHEM: 3950</p>
- </html>
- </notes>
- </species>
- <species id="M_oaa_p" name="Oxaloacetate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H2O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H2O5</p>
- <p>CHEBI: 30744</p>
- <p>KEGG: C00036</p>
- <p>PUBCHEM: 3338</p>
- </html>
- </notes>
- </species>
- <species id="M_orot_e" name="Orotate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H3N2O4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H3N2O4</p>
- <p>CHEBI: 16742</p>
- <p>KEGG: C00295</p>
- <p>PUBCHEM: 3589</p>
- </html>
- </notes>
- </species>
- <species id="M_toctd2eACP_c" name="trans-octadec-2-enoyl-acyl-carrier-protein" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C29H53N2O8PRS">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C29H53N2O8PRS</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_pro__L_c" name="L-Proline" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H9NO2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H9NO2</p>
- <p>CHEBI: 17203</p>
- <p>KEGG: C00148</p>
- <p>PUBCHEM: 3448</p>
- </html>
- </notes>
- </species>
- <species id="M_pro__L_e" name="L-Proline" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H9NO2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H9NO2</p>
- <p>CHEBI: 17203</p>
- <p>KEGG: C00148</p>
- <p>PUBCHEM: 3448</p>
- </html>
- </notes>
- </species>
- <species id="M_orot_c" name="Orotate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H3N2O4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H3N2O4</p>
- <p>CHEBI: 16742</p>
- <p>KEGG: C00295</p>
- <p>PUBCHEM: 3589</p>
- </html>
- </notes>
- </species>
- <species id="M_oaa_e" name="Oxaloacetate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H2O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H2O5</p>
- <p>CHEBI: 30744</p>
- <p>KEGG: C00036</p>
- <p>PUBCHEM: 3338</p>
- </html>
- </notes>
- </species>
- <species id="M_1ddecg3p_c" name="1-dodecanoyl-sn-glycerol-3-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C15H29O7P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C15H29O7P1</p>
- <p>CHEBI: 16975</p>
- <p>KEGG: C00681</p>
- <p>PUBCHEM: 3950</p>
- </html>
- </notes>
- </species>
- <species id="M_dopa_p" name="Dopamine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C8H12NO2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C8H12NO2</p>
- <p>CHEBI: 18243</p>
- <p>KEGG: C03758</p>
- <p>PUBCHEM: 6517</p>
- </html>
- </notes>
- </species>
- <species id="M_oaa_c" name="Oxaloacetate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H2O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H2O5</p>
- <p>CHEBI: 30744</p>
- <p>KEGG: C00036</p>
- <p>PUBCHEM: 3338</p>
- </html>
- </notes>
- </species>
- <species id="M_pro__L_p" name="L-Proline" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H9NO2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H9NO2</p>
- <p>CHEBI: 17203</p>
- <p>KEGG: C00148</p>
- <p>PUBCHEM: 3448</p>
- </html>
- </notes>
- </species>
- <species id="M_orot_p" name="Orotate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H3N2O4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H3N2O4</p>
- <p>CHEBI: 16742</p>
- <p>KEGG: C00295</p>
- <p>PUBCHEM: 3589</p>
- </html>
- </notes>
- </species>
- <species id="M_ohpb_c" name="2-Oxo-3-hydroxy-4-phosphobutanoate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C4H4O8P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H4O8P</p>
- <p>CHEBI: 27951</p>
- <p>KEGG: C06054</p>
- <p>PUBCHEM: 8324</p>
- </html>
- </notes>
- </species>
- <species id="M_arab__L_p" name="L-Arabinose" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H10O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H10O5</p>
- <p>CHEBI: 17535</p>
- <p>KEGG: C00259</p>
- <p>PUBCHEM: 3558</p>
- </html>
- </notes>
- </species>
- <species id="M_etoh_p" name="Ethanol" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C2H6O">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C2H6O</p>
- <p>CHEBI: 16236</p>
- <p>KEGG: C00469</p>
- <p>PUBCHEM: 3752</p>
- </html>
- </notes>
- </species>
- <species id="M_arab__L_e" name="L-Arabinose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H10O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H10O5</p>
- <p>CHEBI: 17535</p>
- <p>KEGG: C00259</p>
- <p>PUBCHEM: 3558</p>
- </html>
- </notes>
- </species>
- <species id="M_arab__L_c" name="L-Arabinose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H10O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H10O5</p>
- <p>CHEBI: 17535</p>
- <p>KEGG: C00259</p>
- <p>PUBCHEM: 3558</p>
- </html>
- </notes>
- </species>
- <species id="M_1agpe161_p" name="1-Acyl-sn-glycero-3-phosphoethanolamine-n-C161" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C21H42NO7P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C21H42NO7P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C04438</p>
- <p>PUBCHEM: 7069</p>
- </html>
- </notes>
- </species>
- <species id="M_fe3hox_p" name="Fe-III-hydroxamate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C9H18O6N3Fe">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H18O6N3Fe</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C06227</p>
- <p>PUBCHEM: 8470</p>
- </html>
- </notes>
- </species>
- <species id="M_d5kg_c" name="d5kg_c" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: </p>
- <p>CHEBI: 27972</p>
- <p>KEGG: C06892</p>
- <p>PUBCHEM: 9109</p>
- </html>
- </notes>
- </species>
- <species id="M_skm5p_c" name="Shikimate-5-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C7H8O8P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C7H8O8P</p>
- <p>CHEBI: 17052</p>
- <p>KEGG: C03175</p>
- <p>PUBCHEM: 6057</p>
- </html>
- </notes>
- </species>
- <species id="M_udcdp13Oag_p" name="Undecaprenyl-diphosphate-O-antigene-13x" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C367H610O228P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C367H610O228P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_acACP_c" name="Acetyl-ACP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H23N2O8PRS">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C13H23N2O8PRS</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C03939</p>
- <p>PUBCHEM: 6663</p>
- </html>
- </notes>
- </species>
- <species id="M_glyb_e" name="Glycine-betaine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H11NO2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H11NO2</p>
- <p>CHEBI: 17750</p>
- <p>KEGG: C00719</p>
- <p>PUBCHEM: 3985</p>
- </html>
- </notes>
- </species>
- <species id="M_glyb_c" name="Glycine-betaine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H11NO2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H11NO2</p>
- <p>CHEBI: 17750</p>
- <p>KEGG: C00719</p>
- <p>PUBCHEM: 3985</p>
- </html>
- </notes>
- </species>
- <species id="M_cdpdddecg_c" name="CDP-1-2-didodecanoylglycerol" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C36H63N3O15P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C36H63N3O15P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C00269</p>
- <p>PUBCHEM: 3567</p>
- </html>
- </notes>
- </species>
- <species id="M_fe3hox_e" name="Fe-III-hydroxamate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C9H18O6N3Fe">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H18O6N3Fe</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C06227</p>
- <p>PUBCHEM: 8470</p>
- </html>
- </notes>
- </species>
- <species id="M_citr__L_c" name="L-Citrulline" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H13N3O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H13N3O3</p>
- <p>CHEBI: 16349</p>
- <p>KEGG: C00327</p>
- <p>PUBCHEM: 3621</p>
- </html>
- </notes>
- </species>
- <species id="M_glyb_p" name="Glycine-betaine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H11NO2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H11NO2</p>
- <p>CHEBI: 17750</p>
- <p>KEGG: C00719</p>
- <p>PUBCHEM: 3985</p>
- </html>
- </notes>
- </species>
- <species id="M_gggagicolipa_c" name="glucosyl-glucosyl-galactosyl-glucosyl-inner-core-oligosaccharide-lipid-A" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-11" fbc:chemicalFormula="C169H291N2O94P4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C169H291N2O94P4</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_1agpe160_p" name="1-Acyl-sn-glycero-3-phosphoethanolamine-n-C160" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C21H44NO7P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C21H44NO7P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C04438</p>
- <p>PUBCHEM: 7069</p>
- </html>
- </notes>
- </species>
- <species id="M_cdpdodec11eg_c" name="CDP-1-2-dioctadec-11-enoylglycerol" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C48H83N3O15P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C48H83N3O15P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C00269</p>
- <p>PUBCHEM: 3567</p>
- </html>
- </notes>
- </species>
- <species id="M_actACP_c" name="Acetoacetyl-ACP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H25N2O9PRS">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C15H25N2O9PRS</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C05744</p>
- <p>PUBCHEM: 8039</p>
- </html>
- </notes>
- </species>
- <species id="M_gicolipa_c" name="glucosyl-inner-core-oligosaccharide-lipid-A" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-11" fbc:chemicalFormula="C151H261N2O79P4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C151H261N2O79P4</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_bbtcoa_c" name="gamma-butyrobetainyl-CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C28H46N8O17P3S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C28H46N8O17P3S</p>
- <p>CHEBI: 28684</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 726??6196</p>
- </html>
- </notes>
- </species>
- <species id="M_fru_e" name="D-Fructose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H12O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H12O6</p>
- <p>CHEBI: 15824</p>
- <p>KEGG: C00095</p>
- <p>PUBCHEM: 3395</p>
- </html>
- </notes>
- </species>
- <species id="M_3gmp_e" name="3-GMP" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O8P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H12N5O8P</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C06193</p>
- <p>PUBCHEM: 8443</p>
- </html>
- </notes>
- </species>
- <species id="M_methf_c" name="5-10-Methenyltetrahydrofolate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H20N7O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C20H20N7O6</p>
- <p>CHEBI: 15638</p>
- <p>KEGG: C00445</p>
- <p>PUBCHEM: 3733</p>
- </html>
- </notes>
- </species>
- <species id="M_fru_c" name="D-Fructose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H12O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H12O6</p>
- <p>CHEBI: 15824</p>
- <p>KEGG: C00095</p>
- <p>PUBCHEM: 3395</p>
- </html>
- </notes>
- </species>
- <species id="M_agdpcbi_c" name="Adenosine-GDP-cobinamide" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C68H95CoN21O21P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C68H95CoN21O21P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C06510</p>
- <p>PUBCHEM: 8741</p>
- </html>
- </notes>
- </species>
- <species id="M_pa141_p" name="1-2-ditetradec-7-enoyl-sn-glycerol-3-phosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C31H55O8P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C31H55O8P1</p>
- <p>CHEBI: 16337</p>
- <p>KEGG: C00416</p>
- <p>PUBCHEM: 3706</p>
- </html>
- </notes>
- </species>
- <species id="M_eca4und_p" name="enterobacterial-common-antigen-x4-undecaprenyl-diphosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C151H234N12O67P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C151H234N12O67P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_fru_p" name="D-Fructose" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H12O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H12O6</p>
- <p>CHEBI: 15824</p>
- <p>KEGG: C00095</p>
- <p>PUBCHEM: 3395</p>
- </html>
- </notes>
- </species>
- <species id="M_3gmp_p" name="3-GMP" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O8P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H12N5O8P</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C06193</p>
- <p>PUBCHEM: 8443</p>
- </html>
- </notes>
- </species>
- <species id="M_codscl6a_c" name="Cobalt-precorrin-6a" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-7" fbc:chemicalFormula="C44H45CoN4O16">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C44H45CoN4O16</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C11542</p>
- <p>PUBCHEM: 13709</p>
- </html>
- </notes>
- </species>
- <species id="M_ara5p_c" name="D-Arabinose-5-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H9O8P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H9O8P</p>
- <p>CHEBI: 16241</p>
- <p>KEGG: C01112</p>
- <p>PUBCHEM: 4344</p>
- </html>
- </notes>
- </species>
- <species id="M_pa141_c" name="1-2-ditetradec-7-enoyl-sn-glycerol-3-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C31H55O8P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C31H55O8P1</p>
- <p>CHEBI: 16337</p>
- <p>KEGG: C00416</p>
- <p>PUBCHEM: 3706</p>
- </html>
- </notes>
- </species>
- <species id="M_cobalt2_e" name="Co2" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Co">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: Co</p>
- <p>CHEBI: 27638</p>
- <p>KEGG: C00175</p>
- <p>PUBCHEM: 3475</p>
- </html>
- </notes>
- </species>
- <species id="M_cobalt2_c" name="Co2" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Co">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: Co</p>
- <p>CHEBI: 27638</p>
- <p>KEGG: C00175</p>
- <p>PUBCHEM: 3475</p>
- </html>
- </notes>
- </species>
- <species id="M_dkdi_c" name="dkdi_c" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: </p>
- <p>CHEBI: 4077</p>
- <p>KEGG: C06891</p>
- <p>PUBCHEM: 9108</p>
- </html>
- </notes>
- </species>
- <species id="M_pmtcoa_c" name="Palmitoyl-CoA-n-C160CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H62N7O17P3S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C37H62N7O17P3S</p>
- <p>CHEBI: 15525</p>
- <p>KEGG: C00154</p>
- <p>PUBCHEM: 3454</p>
- </html>
- </notes>
- </species>
- <species id="M_3hodcoa_c" name="S-3-Hydroxyoctadecanoyl-CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H66N7O18P3S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C39H66N7O18P3S</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_cobalt2_p" name="Co2" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Co">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: Co</p>
- <p>CHEBI: 27638</p>
- <p>KEGG: C00175</p>
- <p>PUBCHEM: 3475</p>
- </html>
- </notes>
- </species>
- <species id="M_lpp_sp_p" name="lpp_sp_p" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: </p>
- <p>CHEBI: NA</p>
- <p>KEGG: NA</p>
- <p>PUBCHEM: NA</p>
- </html>
- </notes>
- </species>
- <species id="M_hphhlipa_c" name="heptosyl-phospho-heptosyl-heptosyl-kdo2-lipidA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C131H231N2O60P3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C131H231N2O60P3</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_ser__D_p" name="D-Serine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H7NO3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H7NO3</p>
- <p>CHEBI: 16523</p>
- <p>KEGG: C00740</p>
- <p>PUBCHEM: 4003</p>
- </html>
- </notes>
- </species>
- <species id="M_cgly_p" name="Cys-Gly" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H10N2O3S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H10N2O3S</p>
- <p>CHEBI: 4047</p>
- <p>KEGG: C01419</p>
- <p>PUBCHEM: 4606</p>
- </html>
- </notes>
- </species>
- <species id="M_pan4p_c" name="Pantetheine-4-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C11H21N2O7PS">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C11H21N2O7PS</p>
- <p>CHEBI: 16858</p>
- <p>KEGG: C01134</p>
- <p>PUBCHEM: 4365</p>
- </html>
- </notes>
- </species>
- <species id="M_cgly_e" name="Cys-Gly" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H10N2O3S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H10N2O3S</p>
- <p>CHEBI: 4047</p>
- <p>KEGG: C01419</p>
- <p>PUBCHEM: 4606</p>
- </html>
- </notes>
- </species>
- <species id="M_ser__D_c" name="D-Serine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H7NO3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H7NO3</p>
- <p>CHEBI: 16523</p>
- <p>KEGG: C00740</p>
- <p>PUBCHEM: 4003</p>
- </html>
- </notes>
- </species>
- <species id="M_ser__D_e" name="D-Serine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H7NO3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H7NO3</p>
- <p>CHEBI: 16523</p>
- <p>KEGG: C00740</p>
- <p>PUBCHEM: 4003</p>
- </html>
- </notes>
- </species>
- <species id="M_cgly_c" name="Cys-Gly" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H10N2O3S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H10N2O3S</p>
- <p>CHEBI: 4047</p>
- <p>KEGG: C01419</p>
- <p>PUBCHEM: 4606</p>
- </html>
- </notes>
- </species>
- <species id="M_phthr_c" name="O-Phospho-4-hydroxy-L-threonine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H8NO7P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H8NO7P</p>
- <p>CHEBI: 18336</p>
- <p>KEGG: C06055</p>
- <p>PUBCHEM: 8325</p>
- </html>
- </notes>
- </species>
- <species id="M_adcob1nda_c" name="Adenosyl-cobyrinate-a-c-diamide" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C55H68CoN11O15">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C55H68CoN11O15</p>
- <p>CHEBI: 2482</p>
- <p>KEGG: C06506</p>
- <p>PUBCHEM: 8737</p>
- </html>
- </notes>
- </species>
- <species id="M_2dr1p_c" name="2-Deoxy-D-ribose-1-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H9O7P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H9O7P</p>
- <p>CHEBI: 28542</p>
- <p>KEGG: C00672</p>
- <p>PUBCHEM: 3941</p>
- </html>
- </notes>
- </species>
- <species id="M_tagur_c" name="D-Tagaturonate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O7">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H9O7</p>
- <p>CHEBI: 17886</p>
- <p>KEGG: C00558</p>
- <p>PUBCHEM: 3838</p>
- </html>
- </notes>
- </species>
- <species id="M_sbt__D_e" name="D-Sorbitol" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H14O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H14O6</p>
- <p>CHEBI: 17924</p>
- <p>KEGG: C00794</p>
- <p>PUBCHEM: 4052</p>
- </html>
- </notes>
- </species>
- <species id="M_codscl5a_c" name="Cobalt-precorrin-5a" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C45H46CoN4O16">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C45H46CoN4O16</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C16242</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_urea_c" name="Urea" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="CH4N2O">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: CH4N2O</p>
- <p>CHEBI: 16199</p>
- <p>KEGG: C00086</p>
- <p>PUBCHEM: 3386</p>
- </html>
- </notes>
- </species>
- <species id="M_pi_p" name="Phosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="HO4P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: HO4P</p>
- <p>CHEBI: 18367</p>
- <p>KEGG: C00009</p>
- <p>PUBCHEM: 3311</p>
- </html>
- </notes>
- </species>
- <species id="M_gdpmann_c" name="GDP-D-mannose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C16H23N5O16P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C16H23N5O16P2</p>
- <p>CHEBI: 15820</p>
- <p>KEGG: C00096</p>
- <p>PUBCHEM: 3396</p>
- </html>
- </notes>
- </species>
- <species id="M_protrna_c" name="L-Prolyl-tRNA-Pro" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C5H8NOR">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H8NOR</p>
- <p>CHEBI: 29154</p>
- <p>KEGG: C02702</p>
- <p>PUBCHEM: 5665</p>
- </html>
- </notes>
- </species>
- <species id="M_murein4px4px4p_p" name="three-disacharide-linked-murein-units-tetrapeptide-crosslinked-tetrapeptide-A2pm-D-ala--tetrapeptide-corsslinked-tetrapeptide-A2pm-D-ala--middle-of-chain" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C111H167N21O58">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C111H167N21O58</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_sbt__D_p" name="D-Sorbitol" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H14O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H14O6</p>
- <p>CHEBI: 17924</p>
- <p>KEGG: C00794</p>
- <p>PUBCHEM: 4052</p>
- </html>
- </notes>
- </species>
- <species id="M_pi_c" name="Phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="HO4P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: HO4P</p>
- <p>CHEBI: 18367</p>
- <p>KEGG: C00009</p>
- <p>PUBCHEM: 3311</p>
- </html>
- </notes>
- </species>
- <species id="M_pi_e" name="Phosphate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="HO4P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: HO4P</p>
- <p>CHEBI: 18367</p>
- <p>KEGG: C00009</p>
- <p>PUBCHEM: 3311</p>
- </html>
- </notes>
- </species>
- <species id="M_1agpg120_p" name="1-Acyl-sn-glycero-3-phosphoglycerol-n-C120" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H36O9P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C18H36O9P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_pe161_p" name="phosphatidylethanolamine-dihexadec-9enoyl-n-C161" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C37H70N1O8P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C37H70N1O8P1</p>
- <p>CHEBI: 16038</p>
- <p>KEGG: C00350</p>
- <p>PUBCHEM: 3643</p>
- </html>
- </notes>
- </species>
- <species id="M_hcys__L_c" name="L-Homocysteine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C4H9NO2S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H9NO2S</p>
- <p>CHEBI: 17588</p>
- <p>KEGG: C00155</p>
- <p>PUBCHEM: 3455</p>
- </html>
- </notes>
- </species>
- <species id="M_pe161_c" name="phosphatidylethanolamine-dihexadec-9enoyl-n-C161" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C37H70N1O8P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C37H70N1O8P1</p>
- <p>CHEBI: 16038</p>
- <p>KEGG: C00350</p>
- <p>PUBCHEM: 3643</p>
- </html>
- </notes>
- </species>
- <species id="M_2h3oppan_c" name="2-Hydroxy-3-oxopropanoate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H3O4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H3O4</p>
- <p>CHEBI: 16992</p>
- <p>KEGG: C01146</p>
- <p>PUBCHEM: 4376</p>
- </html>
- </notes>
- </species>
- <species id="M_ctp_c" name="CTP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C9H12N3O14P3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H12N3O14P3</p>
- <p>CHEBI: 17677</p>
- <p>KEGG: C00063</p>
- <p>PUBCHEM: 3363</p>
- </html>
- </notes>
- </species>
- <species id="M_pe120_c" name="phosphatidylethanolamine-didodecanoyl-n-C120" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C29H58N1O8P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C29H58N1O8P1</p>
- <p>CHEBI: 16038</p>
- <p>KEGG: C00350</p>
- <p>PUBCHEM: 3643</p>
- </html>
- </notes>
- </species>
- <species id="M_pppg9_c" name="Protoporphyrinogen-IX" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C34H38N4O4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C34H38N4O4</p>
- <p>CHEBI: 15435</p>
- <p>KEGG: C01079</p>
- <p>PUBCHEM: 4317</p>
- </html>
- </notes>
- </species>
- <species id="M_fe3hox_c" name="Fe-III-hydroxamate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C9H18O6N3Fe">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H18O6N3Fe</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C06227</p>
- <p>PUBCHEM: 8470</p>
- </html>
- </notes>
- </species>
- <species id="M_pe120_p" name="phosphatidylethanolamine-didodecanoyl-n-C120" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C29H58N1O8P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C29H58N1O8P1</p>
- <p>CHEBI: 16038</p>
- <p>KEGG: C00350</p>
- <p>PUBCHEM: 3643</p>
- </html>
- </notes>
- </species>
- <species id="M_ru5p__D_c" name="D-Ribulose-5-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H9O8P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H9O8P</p>
- <p>CHEBI: 17363</p>
- <p>KEGG: C00199</p>
- <p>PUBCHEM: 3499</p>
- </html>
- </notes>
- </species>
- <species id="M_3odcoa_c" name="3-Oxodecanoyl-CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C31H48N7O18P3S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C31H48N7O18P3S</p>
- <p>CHEBI: 28528</p>
- <p>KEGG: C05265</p>
- <p>PUBCHEM: 7652</p>
- </html>
- </notes>
- </species>
- <species id="M_4r5au_c" name="4-1-D-Ribitylamino-5-aminouracil" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C9H16N4O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H16N4O6</p>
- <p>CHEBI: 15934</p>
- <p>KEGG: C04732</p>
- <p>PUBCHEM: 7303</p>
- </html>
- </notes>
- </species>
- <species id="M_ru5p__L_c" name="L-Ribulose-5-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H9O8P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H9O8P</p>
- <p>CHEBI: 17666</p>
- <p>KEGG: C01101</p>
- <p>PUBCHEM: 4335</p>
- </html>
- </notes>
- </species>
- <species id="M_2tdec7eg3p_c" name="2-tetradec-7-enoyl-sn-glycerol-3-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H32O7P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C17H32O7P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C03974</p>
- <p>PUBCHEM: 6693</p>
- </html>
- </notes>
- </species>
- <species id="M_2tdec7eg3p_p" name="2-tetradec-7-enoyl-sn-glycerol-3-phosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H32O7P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C17H32O7P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C03974</p>
- <p>PUBCHEM: 6693</p>
- </html>
- </notes>
- </species>
- <species id="M_34dhpac_p" name="3-4-Dihydroxyphenylacetaldehyde" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C8H8O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C8H8O3</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C04043</p>
- <p>PUBCHEM: 6744</p>
- </html>
- </notes>
- </species>
- <species id="M_mqn8_c" name="Menaquinone-8" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C51H72O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C51H72O2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C00828</p>
- <p>PUBCHEM: 4086</p>
- </html>
- </notes>
- </species>
- <species id="M_oc2coa_c" name="trans-Oct-2-enoyl-CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C29H44N7O17P3S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C29H44N7O17P3S</p>
- <p>CHEBI: 27537</p>
- <p>KEGG: C05276</p>
- <p>PUBCHEM: 7663</p>
- </html>
- </notes>
- </species>
- <species id="M_34dhpac_e" name="3-4-Dihydroxyphenylacetaldehyde" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C8H8O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C8H8O3</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C04043</p>
- <p>PUBCHEM: 6744</p>
- </html>
- </notes>
- </species>
- <species id="M_tcb_c" name="tricarballylate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H5O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H5O6</p>
- <p>CHEBI: 62517</p>
- <p>KEGG: C19806</p>
- <p>PUBCHEM: 135626273</p>
- </html>
- </notes>
- </species>
- <species id="M_dann_c" name="7-8-Diaminononanoate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C9H21N2O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H21N2O2</p>
- <p>CHEBI: 2247</p>
- <p>KEGG: C01037</p>
- <p>PUBCHEM: 4280</p>
- </html>
- </notes>
- </species>
- <species id="M_tcb_e" name="tricarballylate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H5O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H5O6</p>
- <p>CHEBI: 62517</p>
- <p>KEGG: C19806</p>
- <p>PUBCHEM: 135626273</p>
- </html>
- </notes>
- </species>
- <species id="M_thex2eACP_c" name="trans-Hex-2-enoyl-acyl-carrier-protein" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H29N2O8PRS">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C17H29N2O8PRS</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C05748</p>
- <p>PUBCHEM: 8043</p>
- </html>
- </notes>
- </species>
- <species id="M_tddec2eACP_c" name="trans-Dodec-2-enoyl-acyl-carrier-protein" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C23H41N2O8PRS">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C23H41N2O8PRS</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C05758</p>
- <p>PUBCHEM: 8053</p>
- </html>
- </notes>
- </species>
- <species id="M_5drib_c" name="5-deoxyribose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H10O4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H10O4</p>
- <p>CHEBI: 30797</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 3449</p>
- </html>
- </notes>
- </species>
- <species id="M_cbasp_c" name="N-Carbamoyl-L-aspartate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H6N2O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H6N2O5</p>
- <p>CHEBI: 15859</p>
- <p>KEGG: C00438</p>
- <p>PUBCHEM: 3727</p>
- </html>
- </notes>
- </species>
- <species id="M_tcb_p" name="tricarballylate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H5O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H5O6</p>
- <p>CHEBI: 62517</p>
- <p>KEGG: C19806</p>
- <p>PUBCHEM: 135626273</p>
- </html>
- </notes>
- </species>
- <species id="M_seramp_c" name="L-seryl-AMP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C13H19N6O9P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C13H19N6O9P</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C05820</p>
- <p>PUBCHEM: 8115</p>
- </html>
- </notes>
- </species>
- <species id="M_N1aspmd_c" name="N1-Acetylspermidine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C9H23N3O">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H23N3O</p>
- <p>CHEBI: 17927</p>
- <p>KEGG: C00612</p>
- <p>PUBCHEM: 3886</p>
- </html>
- </notes>
- </species>
- <species id="M_1agpg161_p" name="1-Acyl-sn-glycero-3-phosphoglycerol-n-C161" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H42O9P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C22H42O9P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_damp_p" name="dAMP" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O6P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H12N5O6P</p>
- <p>CHEBI: 17713</p>
- <p>KEGG: C00360</p>
- <p>PUBCHEM: 3651</p>
- </html>
- </notes>
- </species>
- <species id="M_dhnpt_c" name="Dihydroneopterin" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C9H13N5O4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H13N5O4</p>
- <p>CHEBI: 17001</p>
- <p>KEGG: C04874</p>
- <p>PUBCHEM: 7426</p>
- </html>
- </notes>
- </species>
- <species id="M_r1p_c" name="alpha-D-Ribose-1-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H9O8P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H9O8P</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C00442</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_damp_c" name="dAMP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O6P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H12N5O6P</p>
- <p>CHEBI: 17713</p>
- <p>KEGG: C00360</p>
- <p>PUBCHEM: 3651</p>
- </html>
- </notes>
- </species>
- <species id="M_damp_e" name="dAMP" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O6P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H12N5O6P</p>
- <p>CHEBI: 17713</p>
- <p>KEGG: C00360</p>
- <p>PUBCHEM: 3651</p>
- </html>
- </notes>
- </species>
- <species id="M_glytrna_c" name="Glycyl-tRNA-Gly" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C2H4NOR">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C2H4NOR</p>
- <p>CHEBI: 29156</p>
- <p>KEGG: C02412</p>
- <p>PUBCHEM: 5445</p>
- </html>
- </notes>
- </species>
- <species id="M_LalaDgluMdapDala_p" name="L-alanine-D-glutamate-meso-2-6-diaminoheptanedioate-D-alanine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H30N5O9">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C18H30N5O9</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_glc__D_p" name="D-Glucose" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H12O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H12O6</p>
- <p>CHEBI: 4167</p>
- <p>KEGG: C00031</p>
- <p>PUBCHEM: 3333</p>
- </html>
- </notes>
- </species>
- <species id="M_idp_c" name="IDP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H11N4O11P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H11N4O11P2</p>
- <p>CHEBI: 17808</p>
- <p>KEGG: C00104</p>
- <p>PUBCHEM: 3404</p>
- </html>
- </notes>
- </species>
- <species id="M_lystrna_c" name="L-Lysine-tRNA-Lys" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C6H14N2OR">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H14N2OR</p>
- <p>CHEBI: 16047</p>
- <p>KEGG: C01931</p>
- <p>PUBCHEM: 5037</p>
- </html>
- </notes>
- </species>
- <species id="M_glc__D_c" name="D-Glucose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H12O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H12O6</p>
- <p>CHEBI: 4167</p>
- <p>KEGG: C00031</p>
- <p>PUBCHEM: 3333</p>
- </html>
- </notes>
- </species>
- <species id="M_glc__D_e" name="D-Glucose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H12O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H12O6</p>
- <p>CHEBI: 4167</p>
- <p>KEGG: C00031</p>
- <p>PUBCHEM: 3333</p>
- </html>
- </notes>
- </species>
- <species id="M_2agpg160_c" name="2-Acyl-sn-glycero-3-phosphoglycerol-n-C160" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H44O9P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C22H44O9P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_sulfac_p" name="sulfoacetate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C2H2O5S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C2H2O5S</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C14179</p>
- <p>PUBCHEM: 7846991</p>
- </html>
- </notes>
- </species>
- <species id="M_frdp_c" name="Farnesyl-diphosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C15H25O7P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C15H25O7P2</p>
- <p>CHEBI: 17407</p>
- <p>KEGG: C00448</p>
- <p>PUBCHEM: 3736</p>
- </html>
- </notes>
- </species>
- <species id="M_3ocddec5eACP_c" name="3-oxo-cis-dodec-5-enoyl-acyl-carrier-protein" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C23H39N2O9PRS">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C23H39N2O9PRS</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_2agpg160_p" name="2-Acyl-sn-glycero-3-phosphoglycerol-n-C160" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H44O9P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C22H44O9P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_sulfac_e" name="sulfoacetate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C2H2O5S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C2H2O5S</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C14179</p>
- <p>PUBCHEM: 7846991</p>
- </html>
- </notes>
- </species>
- <species id="M_2dh3dgal_c" name="2-Dehydro-3-deoxy-D-galactonate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H9O6</p>
- <p>CHEBI: 17028</p>
- <p>KEGG: C01216</p>
- <p>PUBCHEM: 4438</p>
- </html>
- </notes>
- </species>
- <species id="M_leutrna_c" name="L-Leucyl-tRNA-Leu" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H12NOR">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H12NOR</p>
- <p>CHEBI: 16624</p>
- <p>KEGG: C02047</p>
- <p>PUBCHEM: 5136</p>
- </html>
- </notes>
- </species>
- <species id="M_seln_c" name="Selenide" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="HSe">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: HSe</p>
- <p>CHEBI: 16503</p>
- <p>KEGG: C01528</p>
- <p>PUBCHEM: 4690</p>
- </html>
- </notes>
- </species>
- <species id="M_actp_c" name="Acetyl-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C2H3O5P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C2H3O5P</p>
- <p>CHEBI: 15350</p>
- <p>KEGG: C00227</p>
- <p>PUBCHEM: 3527</p>
- </html>
- </notes>
- </species>
- <species id="M_ppal_p" name="Propanal" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H6O">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H6O</p>
- <p>CHEBI: 17153</p>
- <p>KEGG: C00479</p>
- <p>PUBCHEM: 3762</p>
- </html>
- </notes>
- </species>
- <species id="M_pe2_ST_p" name="pe2_ST_p" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: </p>
- <p>CHEBI: NA</p>
- <p>KEGG: NA</p>
- <p>PUBCHEM: NA</p>
- </html>
- </notes>
- </species>
- <species id="M_ppal_c" name="Propanal" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H6O">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H6O</p>
- <p>CHEBI: 17153</p>
- <p>KEGG: C00479</p>
- <p>PUBCHEM: 3762</p>
- </html>
- </notes>
- </species>
- <species id="M_ppal_e" name="Propanal" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H6O">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H6O</p>
- <p>CHEBI: 17153</p>
- <p>KEGG: C00479</p>
- <p>PUBCHEM: 3762</p>
- </html>
- </notes>
- </species>
- <species id="M_4ppan_c" name="D-4-Phosphopantothenate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C9H15NO8P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H15NO8P</p>
- <p>CHEBI: 15905</p>
- <p>KEGG: C03492</p>
- <p>PUBCHEM: 6304</p>
- </html>
- </notes>
- </species>
- <species id="M_feroxGfe_p" name="Ferrioxamine-G-fe" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C27H46FeN6O10">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C27H46FeN6O10</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_xtsn_c" name="Xanthosine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C10H12N4O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H12N4O6</p>
- <p>CHEBI: 18107</p>
- <p>KEGG: C01762</p>
- <p>PUBCHEM: 4895</p>
- </html>
- </notes>
- </species>
- <species id="M_ppap_c" name="Propanoyl-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H5O5P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H5O5P</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C02876</p>
- <p>PUBCHEM: 5809</p>
- </html>
- </notes>
- </species>
- <species id="M_3ocmrs7eACP_c" name="3-oxo-cis-myristol-7-eoyl-acyl-carrier-protein" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C25H43N2O9PRS">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C25H43N2O9PRS</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_db4p_c" name="3-4-dihydroxy-2-butanone-4-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H7O6P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H7O6P</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C15556</p>
- <p>PUBCHEM: 17396548</p>
- </html>
- </notes>
- </species>
- <species id="M_2dhguln_c" name="2-Dehydro-L-gulonate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O7">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H9O7</p>
- <p>CHEBI: 30769</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 3458</p>
- </html>
- </notes>
- </species>
- <species id="M_pg141_c" name="Phosphatidylglycerol-ditetradec-7-enoyl-n-C141" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C34H62O10P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C34H62O10P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C00344</p>
- <p>PUBCHEM: 3637</p>
- </html>
- </notes>
- </species>
- <species id="M_lac__L_e" name="L-Lactate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H5O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H5O3</p>
- <p>CHEBI: 422</p>
- <p>KEGG: C00186</p>
- <p>PUBCHEM: 3486</p>
- </html>
- </notes>
- </species>
- <species id="M_fpram_c" name="2-Formamido-N1-5-phospho-D-ribosyl-acetamidine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H15N3O8P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C8H15N3O8P</p>
- <p>CHEBI: 18413</p>
- <p>KEGG: C04640</p>
- <p>PUBCHEM: 7229</p>
- </html>
- </notes>
- </species>
- <species id="M_murein5px3p_p" name="two-disacharide-linked-murein-units-pentapeptide-corsslinked-tripeptide-A2pm-A2pm--middle-of-chain" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C74H112N14O39">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C74H112N14O39</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_stcoa_c" name="Stearoyl-CoA-n-C180CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H66N7O17P3S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C39H66N7O17P3S</p>
- <p>CHEBI: 15541</p>
- <p>KEGG: C00412</p>
- <p>PUBCHEM: 3702</p>
- </html>
- </notes>
- </species>
- <species id="M_udcdp20Oag_p" name="Undecaprenyl-diphosphate-O-antigene-20x" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C535H890O347P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C535H890O347P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_2agpe120_p" name="2-Acyl-sn-glycero-3-phosphoethanolamine-n-C120" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C17H36NO7P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C17H36NO7P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C05973</p>
- <p>PUBCHEM: 8253</p>
- </html>
- </notes>
- </species>
- <species id="M_pg141_p" name="Phosphatidylglycerol-ditetradec-7-enoyl-n-C141" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C34H62O10P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C34H62O10P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C00344</p>
- <p>PUBCHEM: 3637</p>
- </html>
- </notes>
- </species>
- <species id="M_lac__L_p" name="L-Lactate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H5O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H5O3</p>
- <p>CHEBI: 422</p>
- <p>KEGG: C00186</p>
- <p>PUBCHEM: 3486</p>
- </html>
- </notes>
- </species>
- <species id="M_etha_e" name="Ethanolamine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C2H8NO">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C2H8NO</p>
- <p>CHEBI: 16000</p>
- <p>KEGG: C00189</p>
- <p>PUBCHEM: 3489</p>
- </html>
- </notes>
- </species>
- <species id="M_feroxGfe_e" name="Ferrioxamine-G-fe" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C27H46FeN6O10">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C27H46FeN6O10</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_eca3und_p" name="enterobacterial-common-antigen-x3-undecaprenyl-diphosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C127H198N9O52P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C127H198N9O52P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_gam_e" name="D-Glucosamine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H14NO5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H14NO5</p>
- <p>CHEBI: 47977</p>
- <p>KEGG: C00329</p>
- <p>PUBCHEM: 3623</p>
- </html>
- </notes>
- </species>
- <species id="M_1hdecg3p_c" name="1-hexadecanoyl-sn-glycerol-3-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C19H37O7P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C19H37O7P1</p>
- <p>CHEBI: 16975</p>
- <p>KEGG: C00681</p>
- <p>PUBCHEM: 3950</p>
- </html>
- </notes>
- </species>
- <species id="M_etha_c" name="Ethanolamine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C2H8NO">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C2H8NO</p>
- <p>CHEBI: 16000</p>
- <p>KEGG: C00189</p>
- <p>PUBCHEM: 3489</p>
- </html>
- </notes>
- </species>
- <species id="M_g6p_p" name="D-Glucose-6-phosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H11O9P</p>
- <p>CHEBI: 4170</p>
- <p>KEGG: C00092</p>
- <p>PUBCHEM: 3392</p>
- </html>
- </notes>
- </species>
- <species id="M_icit_c" name="Isocitrate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H5O7">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H5O7</p>
- <p>CHEBI: 30887</p>
- <p>KEGG: C00311</p>
- <p>PUBCHEM: 3605</p>
- </html>
- </notes>
- </species>
- <species id="M_icit_e" name="Isocitrate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H5O7">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H5O7</p>
- <p>CHEBI: 30887</p>
- <p>KEGG: C00311</p>
- <p>PUBCHEM: 3605</p>
- </html>
- </notes>
- </species>
- <species id="M_gam_p" name="D-Glucosamine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H14NO5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H14NO5</p>
- <p>CHEBI: 47977</p>
- <p>KEGG: C00329</p>
- <p>PUBCHEM: 3623</p>
- </html>
- </notes>
- </species>
- <species id="M_prbamp_c" name="1-5-Phosphoribosyl-AMP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C15H19N5O14P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C15H19N5O14P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C02741</p>
- <p>PUBCHEM: 5701</p>
- </html>
- </notes>
- </species>
- <species id="M_etha_p" name="Ethanolamine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C2H8NO">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C2H8NO</p>
- <p>CHEBI: 16000</p>
- <p>KEGG: C00189</p>
- <p>PUBCHEM: 3489</p>
- </html>
- </notes>
- </species>
- <species id="M_pg180_p" name="Phosphatidylglycerol-dioctadecanoyl-n-C180" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C42H82O10P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C42H82O10P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C00344</p>
- <p>PUBCHEM: 3637</p>
- </html>
- </notes>
- </species>
- <species id="M_icit_p" name="Isocitrate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H5O7">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H5O7</p>
- <p>CHEBI: 30887</p>
- <p>KEGG: C00311</p>
- <p>PUBCHEM: 3605</p>
- </html>
- </notes>
- </species>
- <species id="M_g6p_c" name="D-Glucose-6-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H11O9P</p>
- <p>CHEBI: 4170</p>
- <p>KEGG: C00092</p>
- <p>PUBCHEM: 3392</p>
- </html>
- </notes>
- </species>
- <species id="M_g6p_e" name="D-Glucose-6-phosphate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H11O9P</p>
- <p>CHEBI: 4170</p>
- <p>KEGG: C00092</p>
- <p>PUBCHEM: 3392</p>
- </html>
- </notes>
- </species>
- <species id="M_gagicolipa_c" name="galactosyl-glucosyl-inner-core-oligosaccharide-lipid-A" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-11" fbc:chemicalFormula="C157H271N2O84P4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C157H271N2O84P4</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_feroxGfe_c" name="Ferrioxamine-G-fe" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C27H46FeN6O10">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C27H46FeN6O10</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_g1p_e" name="D-Glucose-1-phosphate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H11O9P</p>
- <p>CHEBI: 16077 29042</p>
- <p>KEGG: C00103</p>
- <p>PUBCHEM: 3403</p>
- </html>
- </notes>
- </species>
- <species id="M_g1p_c" name="D-Glucose-1-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H11O9P</p>
- <p>CHEBI: 16077 29042</p>
- <p>KEGG: C00103</p>
- <p>PUBCHEM: 3403</p>
- </html>
- </notes>
- </species>
- <species id="M_mal__L_c" name="L-Malate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H4O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H4O5</p>
- <p>CHEBI: 30797</p>
- <p>KEGG: C00149</p>
- <p>PUBCHEM: 3449</p>
- </html>
- </notes>
- </species>
- <species id="M_ACP_c" name="acyl-carrier-protein" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H21N2O7PRS">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C11H21N2O7PRS</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C00229</p>
- <p>PUBCHEM: 3528</p>
- </html>
- </notes>
- </species>
- <species id="M_mal__L_e" name="L-Malate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H4O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H4O5</p>
- <p>CHEBI: 30797</p>
- <p>KEGG: C00149</p>
- <p>PUBCHEM: 3449</p>
- </html>
- </notes>
- </species>
- <species id="M_g1p_p" name="D-Glucose-1-phosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H11O9P</p>
- <p>CHEBI: 16077 29042</p>
- <p>KEGG: C00103</p>
- <p>PUBCHEM: 3403</p>
- </html>
- </notes>
- </species>
- <species id="M_mal__L_p" name="L-Malate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H4O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H4O5</p>
- <p>CHEBI: 30797</p>
- <p>KEGG: C00149</p>
- <p>PUBCHEM: 3449</p>
- </html>
- </notes>
- </species>
- <species id="M_aso3_p" name="arsenite" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="AsO3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: AsO3</p>
- <p>CHEBI: 29866</p>
- <p>KEGG: C06697</p>
- <p>PUBCHEM: 8922</p>
- </html>
- </notes>
- </species>
- <species id="M_2ommbl_c" name="2-Octaprenyl-3-methyl-6-methoxy-1-4-benzoquinol" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C48H74O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C48H74O3</p>
- <p>CHEBI: 28636</p>
- <p>KEGG: C05814</p>
- <p>PUBCHEM: 8109</p>
- </html>
- </notes>
- </species>
- <species id="M_murein4px4p4p_p" name="three-disacharide-linked-murein-units-tetrapeptide-crosslinked-tetrapeptide-A2pm-D-ala--one-uncrosslinked-tetrapaptide--middle-of-chain" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C111H169N21O59">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C111H169N21O59</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_tpalm2eACP_c" name="trans-Hexadec-2-enoyl-acyl-carrier-protein" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C27H49N2O8PRS">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C27H49N2O8PRS</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C05763</p>
- <p>PUBCHEM: 8058</p>
- </html>
- </notes>
- </species>
- <species id="M_aso3_e" name="arsenite" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="AsO3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: AsO3</p>
- <p>CHEBI: 29866</p>
- <p>KEGG: C06697</p>
- <p>PUBCHEM: 8922</p>
- </html>
- </notes>
- </species>
- <species id="M_murein5px4px4p_p" name="three-disacharide-linked-murein-units-pentapeptide-crosslinked-tetrapeptide-A2pm-D-ala-tetrapeptide-corsslinked-tetrapeptide-A2pm-D-ala--middle-of-chain" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C114H172N22O59">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C114H172N22O59</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_btcoa_c" name="Butanoyl-CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C25H38N7O17P3S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C25H38N7O17P3S</p>
- <p>CHEBI: 15517</p>
- <p>KEGG: C00136</p>
- <p>PUBCHEM: 3436</p>
- </html>
- </notes>
- </species>
- <species id="M_LalaLglu_c" name="L-alanine-L-glutamate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H13N2O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C8H13N2O5</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_23ccmp_e" name="2-3-Cyclic-CMP" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H11N3O7P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H11N3O7P</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C02354</p>
- <p>PUBCHEM: 5401</p>
- </html>
- </notes>
- </species>
- <species id="M_argtrna_c" name="L-Arginyl-tRNA-Arg" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C6H14N4OR">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H14N4OR</p>
- <p>CHEBI: 18366</p>
- <p>KEGG: C02163</p>
- <p>PUBCHEM: 5239</p>
- </html>
- </notes>
- </species>
- <species id="M_23ccmp_p" name="2-3-Cyclic-CMP" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H11N3O7P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H11N3O7P</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C02354</p>
- <p>PUBCHEM: 5401</p>
- </html>
- </notes>
- </species>
- <species id="M_occoa_c" name="Octanoyl-CoA-n-C80CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C29H46N7O17P3S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C29H46N7O17P3S</p>
- <p>CHEBI: 15533</p>
- <p>KEGG: C01944</p>
- <p>PUBCHEM: 5048</p>
- </html>
- </notes>
- </species>
- <species id="M_gmp_c" name="GMP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O8P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H12N5O8P</p>
- <p>CHEBI: 17345</p>
- <p>KEGG: C00144</p>
- <p>PUBCHEM: 3444</p>
- </html>
- </notes>
- </species>
- <species id="M_pacald_p" name="Phenylacetaldehyde" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C8H8O">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C8H8O</p>
- <p>CHEBI: 16424</p>
- <p>KEGG: C00601</p>
- <p>PUBCHEM: 3876</p>
- </html>
- </notes>
- </species>
- <species id="M_gmp_e" name="GMP" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O8P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H12N5O8P</p>
- <p>CHEBI: 17345</p>
- <p>KEGG: C00144</p>
- <p>PUBCHEM: 3444</p>
- </html>
- </notes>
- </species>
- <species id="M_gmp_p" name="GMP" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O8P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H12N5O8P</p>
- <p>CHEBI: 17345</p>
- <p>KEGG: C00144</p>
- <p>PUBCHEM: 3444</p>
- </html>
- </notes>
- </species>
- <species id="M_pacald_e" name="Phenylacetaldehyde" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C8H8O">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C8H8O</p>
- <p>CHEBI: 16424</p>
- <p>KEGG: C00601</p>
- <p>PUBCHEM: 3876</p>
- </html>
- </notes>
- </species>
- <species id="M_dtdp4aaddg_c" name="dTDP-4-acetamido-4-6-dideoxy-D-galactose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C18H27N3O15P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C18H27N3O15P2</p>
- <p>CHEBI: 28294</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 8290</p>
- </html>
- </notes>
- </species>
- <species id="M_pacald_c" name="Phenylacetaldehyde" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C8H8O">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C8H8O</p>
- <p>CHEBI: 16424</p>
- <p>KEGG: C00601</p>
- <p>PUBCHEM: 3876</p>
- </html>
- </notes>
- </species>
- <species id="M_btn_c" name="Biotin" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H15N2O3S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H15N2O3S</p>
- <p>CHEBI: 15956</p>
- <p>KEGG: C00120</p>
- <p>PUBCHEM: 3420</p>
- </html>
- </notes>
- </species>
- <species id="M_4iz5pp_c" name="4-Imidazolone-5-propanoate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H7N2O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H7N2O3</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C03680</p>
- <p>PUBCHEM: 6455</p>
- </html>
- </notes>
- </species>
- <species id="M_n2o_p" name="Nitrous-oxide" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="N2O">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: N2O</p>
- <p>CHEBI: 17045</p>
- <p>KEGG: C00887</p>
- <p>PUBCHEM: 4143</p>
- </html>
- </notes>
- </species>
- <species id="M_4c2me_c" name="4-cytidine-5-diphospho-2-C-methyl-D-erythritol" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C14H23N3O14P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C14H23N3O14P2</p>
- <p>CHEBI: 16578</p>
- <p>KEGG: C11435</p>
- <p>PUBCHEM: 13607</p>
- </html>
- </notes>
- </species>
- <species id="M_n2o_c" name="Nitrous-oxide" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="N2O">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: N2O</p>
- <p>CHEBI: 17045</p>
- <p>KEGG: C00887</p>
- <p>PUBCHEM: 4143</p>
- </html>
- </notes>
- </species>
- <species id="M_n2o_e" name="Nitrous-oxide" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="N2O">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: N2O</p>
- <p>CHEBI: 17045</p>
- <p>KEGG: C00887</p>
- <p>PUBCHEM: 4143</p>
- </html>
- </notes>
- </species>
- <species id="M_tdec2eACP_c" name="trans-Dec-2-enoyl-acyl-carrier-protein" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H37N2O8PRS">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C21H37N2O8PRS</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C05754</p>
- <p>PUBCHEM: 8049</p>
- </html>
- </notes>
- </species>
- <species id="M_uamr_c" name="UDP-N-acetylmuramate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C20H28N3O19P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C20H28N3O19P2</p>
- <p>CHEBI: 17882</p>
- <p>KEGG: C01050</p>
- <p>PUBCHEM: 4292</p>
- </html>
- </notes>
- </species>
- <species id="M_24dhhed_c" name="24dhhed_c" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: </p>
- <p>CHEBI: 0</p>
- <p>KEGG: C06201</p>
- <p>PUBCHEM: 8451</p>
- </html>
- </notes>
- </species>
- <species id="M_air_c" name="5-amino-1-5-phospho-D-ribosyl-imidazole" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C8H12N3O7P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C8H12N3O7P</p>
- <p>CHEBI: 28843</p>
- <p>KEGG: C03373</p>
- <p>PUBCHEM: 6208</p>
- </html>
- </notes>
- </species>
- <species id="M_athr__L_c" name="L-Allo-threonine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C4H9NO3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H9NO3</p>
- <p>CHEBI: 28718</p>
- <p>KEGG: C05519</p>
- <p>PUBCHEM: 7864</p>
- </html>
- </notes>
- </species>
- <species id="M_Pald_c" name="Phosphonoacetaldehyde" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C2H3O4P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C2H3O4P1</p>
- <p>CHEBI: 18124</p>
- <p>KEGG: C03167</p>
- <p>PUBCHEM: 6050</p>
- </html>
- </notes>
- </species>
- <species id="M_phe__L_e" name="L-Phenylalanine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C9H11NO2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H11NO2</p>
- <p>CHEBI: 17295</p>
- <p>KEGG: C00079</p>
- <p>PUBCHEM: 3379</p>
- </html>
- </notes>
- </species>
- <species id="M_ca2_e" name="Calcium" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Ca">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: Ca</p>
- <p>CHEBI: 29108</p>
- <p>KEGG: C00076</p>
- <p>PUBCHEM: 3376</p>
- </html>
- </notes>
- </species>
- <species id="M_tyr__L_p" name="L-Tyrosine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C9H11NO3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H11NO3</p>
- <p>CHEBI: 17895</p>
- <p>KEGG: C00082</p>
- <p>PUBCHEM: 3382</p>
- </html>
- </notes>
- </species>
- <species id="M_ca2_c" name="Calcium" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Ca">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: Ca</p>
- <p>CHEBI: 29108</p>
- <p>KEGG: C00076</p>
- <p>PUBCHEM: 3376</p>
- </html>
- </notes>
- </species>
- <species id="M_dsbcox_p" name="protein-disulfide-isomerase-II-oxidized" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="X">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: X</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_phe__L_c" name="L-Phenylalanine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C9H11NO2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H11NO2</p>
- <p>CHEBI: 17295</p>
- <p>KEGG: C00079</p>
- <p>PUBCHEM: 3379</p>
- </html>
- </notes>
- </species>
- <species id="M_2agpe140_c" name="2-Acyl-sn-glycero-3-phosphoethanolamine-n-C140" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C19H40NO7P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C19H40NO7P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C05973</p>
- <p>PUBCHEM: 8253</p>
- </html>
- </notes>
- </species>
- <species id="M_fmnh2_c" name="Reduced-FMN" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C17H21N4O9P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C17H21N4O9P</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_tyr__L_e" name="L-Tyrosine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C9H11NO3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H11NO3</p>
- <p>CHEBI: 17895</p>
- <p>KEGG: C00082</p>
- <p>PUBCHEM: 3382</p>
- </html>
- </notes>
- </species>
- <species id="M_phe__L_p" name="L-Phenylalanine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C9H11NO2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H11NO2</p>
- <p>CHEBI: 17295</p>
- <p>KEGG: C00079</p>
- <p>PUBCHEM: 3379</p>
- </html>
- </notes>
- </species>
- <species id="M_5mdr1p_c" name="5-Methylthio-5-deoxy-D-ribose-1-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O7PS">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H11O7PS</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C04188</p>
- <p>PUBCHEM: 6864</p>
- </html>
- </notes>
- </species>
- <species id="M_ca2_p" name="Calcium" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Ca">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: Ca</p>
- <p>CHEBI: 29108</p>
- <p>KEGG: C00076</p>
- <p>PUBCHEM: 3376</p>
- </html>
- </notes>
- </species>
- <species id="M_tyr__L_c" name="L-Tyrosine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C9H11NO3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H11NO3</p>
- <p>CHEBI: 17895</p>
- <p>KEGG: C00082</p>
- <p>PUBCHEM: 3382</p>
- </html>
- </notes>
- </species>
- <species id="M_2agpe140_p" name="2-Acyl-sn-glycero-3-phosphoethanolamine-n-C140" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C19H40NO7P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C19H40NO7P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C05973</p>
- <p>PUBCHEM: 8253</p>
- </html>
- </notes>
- </species>
- <species id="M_2hdecg3p_c" name="2-hexadecanoyl-sn-glycerol-3-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H38O7P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C19H38O7P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C03974</p>
- <p>PUBCHEM: 6693</p>
- </html>
- </notes>
- </species>
- <species id="M_tym_e" name="Tyramine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C8H12NO">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C8H12NO</p>
- <p>CHEBI: 15760</p>
- <p>KEGG: C00483</p>
- <p>PUBCHEM: 3766</p>
- </html>
- </notes>
- </species>
- <species id="M_ahdt_c" name="2-Amino-4-hydroxy-6-erythro-1-2-3-trihydroxypropyl-dihydropteridine-triphosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C9H12N5O13P3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H12N5O13P3</p>
- <p>CHEBI: 18372</p>
- <p>KEGG: C04895</p>
- <p>PUBCHEM: 7446</p>
- </html>
- </notes>
- </species>
- <species id="M_murein4p3p_p" name="two-linked-disacharide-tetrapeptide-and-tripeptide-murein-units-uncrosslinked-middle-of-chain" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C71H109N13O39">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C71H109N13O39</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_3ohdcoa_c" name="3-Oxohexadecanoyl-CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H60N7O18P3S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C37H60N7O18P3S</p>
- <p>CHEBI: 15491</p>
- <p>KEGG: C05259</p>
- <p>PUBCHEM: 7646</p>
- </html>
- </notes>
- </species>
- <species id="M_f6p_e" name="D-Fructose-6-phosphate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H11O9P</p>
- <p>CHEBI: 15946</p>
- <p>KEGG: C00085</p>
- <p>PUBCHEM: 3385</p>
- </html>
- </notes>
- </species>
- <species id="M_2hdecg3p_p" name="2-hexadecanoyl-sn-glycerol-3-phosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H38O7P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C19H38O7P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C03974</p>
- <p>PUBCHEM: 6693</p>
- </html>
- </notes>
- </species>
- <species id="M_tym_p" name="Tyramine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C8H12NO">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C8H12NO</p>
- <p>CHEBI: 15760</p>
- <p>KEGG: C00483</p>
- <p>PUBCHEM: 3766</p>
- </html>
- </notes>
- </species>
- <species id="M_pser__L_c" name="O-Phospho-L-serine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H6NO6P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H6NO6P</p>
- <p>CHEBI: 15811</p>
- <p>KEGG: C01005</p>
- <p>PUBCHEM: 4251</p>
- </html>
- </notes>
- </species>
- <species id="M_pser__L_e" name="O-Phospho-L-serine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H6NO6P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H6NO6P</p>
- <p>CHEBI: 15811</p>
- <p>KEGG: C01005</p>
- <p>PUBCHEM: 4251</p>
- </html>
- </notes>
- </species>
- <species id="M_ethso3_e" name="ethanesulfonate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H5O3S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C2H5O3S</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_trp__L_p" name="L-Tryptophan" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C11H12N2O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C11H12N2O2</p>
- <p>CHEBI: 16828</p>
- <p>KEGG: C00078</p>
- <p>PUBCHEM: 3378</p>
- </html>
- </notes>
- </species>
- <species id="M_acgam1p_p" name="N-Acetyl-D-glucosamine-1-phosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C8H14NO9P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C8H14NO9P</p>
- <p>CHEBI: 7125</p>
- <p>KEGG: C04256</p>
- <p>PUBCHEM: 6921</p>
- </html>
- </notes>
- </species>
- <species id="M_pser__L_p" name="O-Phospho-L-serine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H6NO6P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H6NO6P</p>
- <p>CHEBI: 15811</p>
- <p>KEGG: C01005</p>
- <p>PUBCHEM: 4251</p>
- </html>
- </notes>
- </species>
- <species id="M_trp__L_e" name="L-Tryptophan" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C11H12N2O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C11H12N2O2</p>
- <p>CHEBI: 16828</p>
- <p>KEGG: C00078</p>
- <p>PUBCHEM: 3378</p>
- </html>
- </notes>
- </species>
- <species id="M_acgam1p_e" name="N-Acetyl-D-glucosamine-1-phosphate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C8H14NO9P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C8H14NO9P</p>
- <p>CHEBI: 7125</p>
- <p>KEGG: C04256</p>
- <p>PUBCHEM: 6921</p>
- </html>
- </notes>
- </species>
- <species id="M_acgam1p_c" name="N-Acetyl-D-glucosamine-1-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C8H14NO9P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C8H14NO9P</p>
- <p>CHEBI: 7125</p>
- <p>KEGG: C04256</p>
- <p>PUBCHEM: 6921</p>
- </html>
- </notes>
- </species>
- <species id="M_trp__L_c" name="L-Tryptophan" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C11H12N2O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C11H12N2O2</p>
- <p>CHEBI: 16828</p>
- <p>KEGG: C00078</p>
- <p>PUBCHEM: 3378</p>
- </html>
- </notes>
- </species>
- <species id="M_ethso3_p" name="ethanesulfonate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H5O3S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C2H5O3S</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_rmn_c" name="L-Rhamnose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H12O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H12O5</p>
- <p>CHEBI: 16055</p>
- <p>KEGG: C00507</p>
- <p>PUBCHEM: 3790</p>
- </html>
- </notes>
- </species>
- <species id="M_g3pe_e" name="sn-Glycero-3-phosphoethanolamine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H14NO6P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H14NO6P</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C01233</p>
- <p>PUBCHEM: 4454</p>
- </html>
- </notes>
- </species>
- <species id="M_g3pg_p" name="Glycerophosphoglycerol" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H14O8P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H14O8P</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C03274</p>
- <p>PUBCHEM: 6135</p>
- </html>
- </notes>
- </species>
- <species id="M_dc2coa_c" name="trans-Dec-2-enoyl-CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C31H48N7O17P3S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C31H48N7O17P3S</p>
- <p>CHEBI: 10723</p>
- <p>KEGG: C05275</p>
- <p>PUBCHEM: 7662</p>
- </html>
- </notes>
- </species>
- <species id="M_rmn_e" name="L-Rhamnose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H12O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H12O5</p>
- <p>CHEBI: 16055</p>
- <p>KEGG: C00507</p>
- <p>PUBCHEM: 3790</p>
- </html>
- </notes>
- </species>
- <species id="M_g3pe_c" name="sn-Glycero-3-phosphoethanolamine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H14NO6P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H14NO6P</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C01233</p>
- <p>PUBCHEM: 4454</p>
- </html>
- </notes>
- </species>
- <species id="M_pgp161_p" name="Phosphatidylglycerophosphate-dihexadec-9-enoyl-n-C161" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C38H69O13P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C38H69O13P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_clpn160_p" name="cardiolipin-tetrahexadecanoyl-n-C160" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C73H140O17P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C73H140O17P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C05980</p>
- <p>PUBCHEM: 8259</p>
- </html>
- </notes>
- </species>
- <species id="M_acgal1p_p" name="N-Acetyl-D-galactosamine-1-phosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C8H14NO9P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C8H14NO9P</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_xyl__D_p" name="D-Xylose" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H10O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H10O5</p>
- <p>CHEBI: 15936</p>
- <p>KEGG: C00181</p>
- <p>PUBCHEM: 3481</p>
- </html>
- </notes>
- </species>
- <species id="M_g3pg_c" name="Glycerophosphoglycerol" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H14O8P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H14O8P</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C03274</p>
- <p>PUBCHEM: 6135</p>
- </html>
- </notes>
- </species>
- <species id="M_rmn_p" name="L-Rhamnose" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H12O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H12O5</p>
- <p>CHEBI: 16055</p>
- <p>KEGG: C00507</p>
- <p>PUBCHEM: 3790</p>
- </html>
- </notes>
- </species>
- <species id="M_g3pe_p" name="sn-Glycero-3-phosphoethanolamine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H14NO6P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H14NO6P</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C01233</p>
- <p>PUBCHEM: 4454</p>
- </html>
- </notes>
- </species>
- <species id="M_g3pg_e" name="Glycerophosphoglycerol" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H14O8P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H14O8P</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C03274</p>
- <p>PUBCHEM: 6135</p>
- </html>
- </notes>
- </species>
- <species id="M_xyl__D_e" name="D-Xylose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H10O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H10O5</p>
- <p>CHEBI: 15936</p>
- <p>KEGG: C00181</p>
- <p>PUBCHEM: 3481</p>
- </html>
- </notes>
- </species>
- <species id="M_xyl__D_c" name="D-Xylose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H10O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H10O5</p>
- <p>CHEBI: 15936</p>
- <p>KEGG: C00181</p>
- <p>PUBCHEM: 3481</p>
- </html>
- </notes>
- </species>
- <species id="M_acgal1p_e" name="N-Acetyl-D-galactosamine-1-phosphate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C8H14NO9P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C8H14NO9P</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_dhf_c" name="7-8-Dihydrofolate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C19H19N7O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C19H19N7O6</p>
- <p>CHEBI: 15633</p>
- <p>KEGG: C00415</p>
- <p>PUBCHEM: 3705</p>
- </html>
- </notes>
- </species>
- <species id="M_g3pc_p" name="sn-Glycero-3-phosphocholine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C8H20NO6P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C8H20NO6P</p>
- <p>CHEBI: 16870</p>
- <p>KEGG: C00670</p>
- <p>PUBCHEM: 3939</p>
- </html>
- </notes>
- </species>
- <species id="M_orn_p" name="Ornithine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C5H13N2O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H13N2O2</p>
- <p>CHEBI: 18257</p>
- <p>KEGG: C01602</p>
- <p>PUBCHEM: 4756</p>
- </html>
- </notes>
- </species>
- <species id="M_alltn_p" name="Allantoin" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C4H6N4O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H6N4O3</p>
- <p>CHEBI: 15676</p>
- <p>KEGG: C01551</p>
- <p>PUBCHEM: 4709</p>
- </html>
- </notes>
- </species>
- <species id="M_pgp120_c" name="Phosphatidylglycerophosphate-didodecanoyl-n-C120" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C30H57O13P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C30H57O13P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C03892</p>
- <p>PUBCHEM: 6624</p>
- </html>
- </notes>
- </species>
- <species id="M_orn_e" name="Ornithine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C5H13N2O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H13N2O2</p>
- <p>CHEBI: 18257</p>
- <p>KEGG: C01602</p>
- <p>PUBCHEM: 4756</p>
- </html>
- </notes>
- </species>
- <species id="M_g3pc_e" name="sn-Glycero-3-phosphocholine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C8H20NO6P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C8H20NO6P</p>
- <p>CHEBI: 16870</p>
- <p>KEGG: C00670</p>
- <p>PUBCHEM: 3939</p>
- </html>
- </notes>
- </species>
- <species id="M_orn_c" name="Ornithine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C5H13N2O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H13N2O2</p>
- <p>CHEBI: 18257</p>
- <p>KEGG: C01602</p>
- <p>PUBCHEM: 4756</p>
- </html>
- </notes>
- </species>
- <species id="M_amp_c" name="AMP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O7P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H12N5O7P</p>
- <p>CHEBI: 16027</p>
- <p>KEGG: C00020</p>
- <p>PUBCHEM: 3322</p>
- </html>
- </notes>
- </species>
- <species id="M_alltn_e" name="Allantoin" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C4H6N4O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H6N4O3</p>
- <p>CHEBI: 15676</p>
- <p>KEGG: C01551</p>
- <p>PUBCHEM: 4709</p>
- </html>
- </notes>
- </species>
- <species id="M_ocdcaACP_c" name="Octadecanoyl-ACP-n-C180ACP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C29H55N2O8PRS">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C29H55N2O8PRS</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_pgp120_p" name="Phosphatidylglycerophosphate-didodecanoyl-n-C120" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C30H57O13P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C30H57O13P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C03892</p>
- <p>PUBCHEM: 6624</p>
- </html>
- </notes>
- </species>
- <species id="M_alltn_c" name="Allantoin" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C4H6N4O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H6N4O3</p>
- <p>CHEBI: 15676</p>
- <p>KEGG: C01551</p>
- <p>PUBCHEM: 4709</p>
- </html>
- </notes>
- </species>
- <species id="M_alltt_c" name="Allantoate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H7N4O4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H7N4O4</p>
- <p>CHEBI: 30837</p>
- <p>KEGG: C00499</p>
- <p>PUBCHEM: 3782</p>
- </html>
- </notes>
- </species>
- <species id="M_dcyt_p" name="Deoxycytidine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C9H13N3O4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H13N3O4</p>
- <p>CHEBI: 15698</p>
- <p>KEGG: C00881</p>
- <p>PUBCHEM: 4137</p>
- </html>
- </notes>
- </species>
- <species id="M_aps_c" name="Adenosine-5-phosphosulfate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O10PS">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H12N5O10PS</p>
- <p>CHEBI: 17709</p>
- <p>KEGG: C00224</p>
- <p>PUBCHEM: 3524</p>
- </html>
- </notes>
- </species>
- <species id="M_mnl_e" name="D-Mannitol" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H14O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H14O6</p>
- <p>CHEBI: 16899</p>
- <p>KEGG: C00392</p>
- <p>PUBCHEM: 3682</p>
- </html>
- </notes>
- </species>
- <species id="M_23camp_p" name="2-3-Cyclic-AMP" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H11N5O6P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H11N5O6P</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C02353</p>
- <p>PUBCHEM: 5400</p>
- </html>
- </notes>
- </species>
- <species id="M_dcyt_c" name="Deoxycytidine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C9H13N3O4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H13N3O4</p>
- <p>CHEBI: 15698</p>
- <p>KEGG: C00881</p>
- <p>PUBCHEM: 4137</p>
- </html>
- </notes>
- </species>
- <species id="M_dcyt_e" name="Deoxycytidine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C9H13N3O4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H13N3O4</p>
- <p>CHEBI: 15698</p>
- <p>KEGG: C00881</p>
- <p>PUBCHEM: 4137</p>
- </html>
- </notes>
- </species>
- <species id="M_23camp_e" name="2-3-Cyclic-AMP" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H11N5O6P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H11N5O6P</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C02353</p>
- <p>PUBCHEM: 5400</p>
- </html>
- </notes>
- </species>
- <species id="M_mnl_p" name="D-Mannitol" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H14O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H14O6</p>
- <p>CHEBI: 16899</p>
- <p>KEGG: C00392</p>
- <p>PUBCHEM: 3682</p>
- </html>
- </notes>
- </species>
- <species id="M_rnam_p" name="rnam_p" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: </p>
- <p>CHEBI: 15927</p>
- <p>KEGG: C03150</p>
- <p>PUBCHEM: 6038</p>
- </html>
- </notes>
- </species>
- <species id="M_ap4a_c" name="P1-P4-Bis-5-adenosyl-tetraphosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C20H24N10O19P4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C20H24N10O19P4</p>
- <p>CHEBI: 17422</p>
- <p>KEGG: C01260</p>
- <p>PUBCHEM: 4479</p>
- </html>
- </notes>
- </species>
- <species id="M_rnam_c" name="rnam_c" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: </p>
- <p>CHEBI: 15927</p>
- <p>KEGG: C03150</p>
- <p>PUBCHEM: 6038</p>
- </html>
- </notes>
- </species>
- <species id="M_rnam_e" name="rnam_e" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: </p>
- <p>CHEBI: 15927</p>
- <p>KEGG: C03150</p>
- <p>PUBCHEM: 6038</p>
- </html>
- </notes>
- </species>
- <species id="M_so3_c" name="Sulfite" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="O3S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: O3S</p>
- <p>CHEBI: 48854</p>
- <p>KEGG: C00094</p>
- <p>PUBCHEM: 3394</p>
- </html>
- </notes>
- </species>
- <species id="M_so3_e" name="Sulfite" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="O3S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: O3S</p>
- <p>CHEBI: 48854</p>
- <p>KEGG: C00094</p>
- <p>PUBCHEM: 3394</p>
- </html>
- </notes>
- </species>
- <species id="M_dha_e" name="Dihydroxyacetone" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H6O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H6O3</p>
- <p>CHEBI: 16016</p>
- <p>KEGG: C00184</p>
- <p>PUBCHEM: 3484</p>
- </html>
- </notes>
- </species>
- <species id="M_dha_c" name="Dihydroxyacetone" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H6O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H6O3</p>
- <p>CHEBI: 16016</p>
- <p>KEGG: C00184</p>
- <p>PUBCHEM: 3484</p>
- </html>
- </notes>
- </species>
- <species id="M_peptido_ST_p" name="peptido_ST_p" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: </p>
- <p>CHEBI: NA</p>
- <p>KEGG: NA</p>
- <p>PUBCHEM: NA</p>
- </html>
- </notes>
- </species>
- <species id="M_so3_p" name="Sulfite" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="O3S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: O3S</p>
- <p>CHEBI: 48854</p>
- <p>KEGG: C00094</p>
- <p>PUBCHEM: 3394</p>
- </html>
- </notes>
- </species>
- <species id="M_3oddcoa_c" name="3-Oxododecanoyl-CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H52N7O18P3S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C33H52N7O18P3S</p>
- <p>CHEBI: 27868</p>
- <p>KEGG: C05263</p>
- <p>PUBCHEM: 7650</p>
- </html>
- </notes>
- </species>
- <species id="M_dha_p" name="Dihydroxyacetone" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H6O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H6O3</p>
- <p>CHEBI: 16016</p>
- <p>KEGG: C00184</p>
- <p>PUBCHEM: 3484</p>
- </html>
- </notes>
- </species>
- <species id="M_dkmpp_c" name="2-3-diketo-5-methylthio-1-phosphopentane" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H9O6PS">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H9O6PS</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C15650</p>
- <p>PUBCHEM: 17396640</p>
- </html>
- </notes>
- </species>
- <species id="M_tyrp_p" name="Phosphotyrosine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H10NO6P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H10NO6P</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C06501</p>
- <p>PUBCHEM: 8732</p>
- </html>
- </notes>
- </species>
- <species id="M_fald_e" name="Formaldehyde" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="CH2O">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: CH2O</p>
- <p>CHEBI: 16842</p>
- <p>KEGG: C00067</p>
- <p>PUBCHEM: 3367</p>
- </html>
- </notes>
- </species>
- <species id="M_fald_c" name="Formaldehyde" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="CH2O">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: CH2O</p>
- <p>CHEBI: 16842</p>
- <p>KEGG: C00067</p>
- <p>PUBCHEM: 3367</p>
- </html>
- </notes>
- </species>
- <species id="M_nac_p" name="Nicotinate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H4NO2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H4NO2</p>
- <p>CHEBI: 15940</p>
- <p>KEGG: C00253</p>
- <p>PUBCHEM: 3552</p>
- </html>
- </notes>
- </species>
- <species id="M_murein_lpp_p" name="murein_lpp_p" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: </p>
- <p>CHEBI: NA</p>
- <p>KEGG: NA</p>
- <p>PUBCHEM: NA</p>
- </html>
- </notes>
- </species>
- <species id="M_tartr__D_c" name="D-tartrate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H4O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H4O6</p>
- <p>CHEBI: 15672</p>
- <p>KEGG: C02107</p>
- <p>PUBCHEM: 5189</p>
- </html>
- </notes>
- </species>
- <species id="M_fald_p" name="Formaldehyde" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="CH2O">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: CH2O</p>
- <p>CHEBI: 16842</p>
- <p>KEGG: C00067</p>
- <p>PUBCHEM: 3367</p>
- </html>
- </notes>
- </species>
- <species id="M_tartr__D_e" name="D-tartrate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H4O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H4O6</p>
- <p>CHEBI: 15672</p>
- <p>KEGG: C02107</p>
- <p>PUBCHEM: 5189</p>
- </html>
- </notes>
- </species>
- <species id="M_man6p_p" name="D-Mannose-6-phosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H11O9P</p>
- <p>CHEBI: 17369</p>
- <p>KEGG: C00275</p>
- <p>PUBCHEM: 3572</p>
- </html>
- </notes>
- </species>
- <species id="M_Nmtrp_c" name="N-Methyltryptophan" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C12H14N2O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C12H14N2O2</p>
- <p>CHEBI: 15334</p>
- <p>KEGG: C02983</p>
- <p>PUBCHEM: 5892</p>
- </html>
- </notes>
- </species>
- <species id="M_trnapro_c" name="tRNA-Pro" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="R">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: R</p>
- <p>CHEBI: 29177</p>
- <p>KEGG: C01649</p>
- <p>PUBCHEM: 4798</p>
- </html>
- </notes>
- </species>
- <species id="M_fecrm_e" name="Ferrichrome" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C27H42FeN9O12">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C27H42FeN9O12</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C06228</p>
- <p>PUBCHEM: 8471</p>
- </html>
- </notes>
- </species>
- <species id="M_fecrm_c" name="Ferrichrome" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C27H42FeN9O12">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C27H42FeN9O12</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C06228</p>
- <p>PUBCHEM: 8471</p>
- </html>
- </notes>
- </species>
- <species id="M_man6p_c" name="D-Mannose-6-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H11O9P</p>
- <p>CHEBI: 17369</p>
- <p>KEGG: C00275</p>
- <p>PUBCHEM: 3572</p>
- </html>
- </notes>
- </species>
- <species id="M_man6p_e" name="D-Mannose-6-phosphate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H11O9P</p>
- <p>CHEBI: 17369</p>
- <p>KEGG: C00275</p>
- <p>PUBCHEM: 3572</p>
- </html>
- </notes>
- </species>
- <species id="M_gdptp_c" name="Guanosine-3-diphosphate-5-triphosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-7" fbc:chemicalFormula="C10H11N5O20P5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H11N5O20P5</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C04494</p>
- <p>PUBCHEM: 7111</p>
- </html>
- </notes>
- </species>
- <species id="M_fad_c" name="Flavin-adenine-dinucleotide-oxidized" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C27H31N9O15P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C27H31N9O15P2</p>
- <p>CHEBI: 16238</p>
- <p>KEGG: C00016</p>
- <p>PUBCHEM: 3318</p>
- </html>
- </notes>
- </species>
- <species id="M_fecrm_p" name="Ferrichrome" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C27H42FeN9O12">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C27H42FeN9O12</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C06228</p>
- <p>PUBCHEM: 8471</p>
- </html>
- </notes>
- </species>
- <species id="M_12dgr160_p" name="1-2-Diacyl-sn-glycerol-dihexadecanoyl-n-C160" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C35H68O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C35H68O5</p>
- <p>CHEBI: 17815</p>
- <p>KEGG: C00641</p>
- <p>PUBCHEM: 3914</p>
- </html>
- </notes>
- </species>
- <species id="M_ni2_e" name="nickel" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Ni">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: Ni</p>
- <p>CHEBI: 28112</p>
- <p>KEGG: C00291</p>
- <p>PUBCHEM: 3585</p>
- </html>
- </notes>
- </species>
- <species id="M_ni2_c" name="nickel" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Ni">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: Ni</p>
- <p>CHEBI: 28112</p>
- <p>KEGG: C00291</p>
- <p>PUBCHEM: 3585</p>
- </html>
- </notes>
- </species>
- <species id="M_12dgr160_c" name="1-2-Diacyl-sn-glycerol-dihexadecanoyl-n-C160" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C35H68O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C35H68O5</p>
- <p>CHEBI: 17815</p>
- <p>KEGG: C00641</p>
- <p>PUBCHEM: 3914</p>
- </html>
- </notes>
- </species>
- <species id="M_ni2_p" name="nickel" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Ni">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: Ni</p>
- <p>CHEBI: 28112</p>
- <p>KEGG: C00291</p>
- <p>PUBCHEM: 3585</p>
- </html>
- </notes>
- </species>
- <species id="M_so4_p" name="Sulfate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="O4S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: O4S</p>
- <p>CHEBI: 16189</p>
- <p>KEGG: C00059</p>
- <p>PUBCHEM: 3359</p>
- </html>
- </notes>
- </species>
- <species id="M_urea_p" name="Urea" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="CH4N2O">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: CH4N2O</p>
- <p>CHEBI: 16199</p>
- <p>KEGG: C00086</p>
- <p>PUBCHEM: 3386</p>
- </html>
- </notes>
- </species>
- <species id="M_ckdo_c" name="CMP-3-deoxy-D-manno-octulosonate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C17H24N3O15P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C17H24N3O15P</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C04121</p>
- <p>PUBCHEM: 6808</p>
- </html>
- </notes>
- </species>
- <species id="M_mn2_c" name="Mn2" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Mn">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: Mn</p>
- <p>CHEBI: 18291</p>
- <p>KEGG: C00034</p>
- <p>PUBCHEM: 3336</p>
- </html>
- </notes>
- </species>
- <species id="M_mn2_e" name="Mn2" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Mn">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: Mn</p>
- <p>CHEBI: 18291</p>
- <p>KEGG: C00034</p>
- <p>PUBCHEM: 3336</p>
- </html>
- </notes>
- </species>
- <species id="M_acgal_e" name="N-Acetyl-D-galactosamine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C8H15NO6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C8H15NO6</p>
- <p>CHEBI: 28037</p>
- <p>KEGG: C01132</p>
- <p>PUBCHEM: 4363</p>
- </html>
- </notes>
- </species>
- <species id="M_so4_c" name="Sulfate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="O4S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: O4S</p>
- <p>CHEBI: 16189</p>
- <p>KEGG: C00059</p>
- <p>PUBCHEM: 3359</p>
- </html>
- </notes>
- </species>
- <species id="M_23dhbzs2_c" name="23dhbzs2_c" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: </p>
- <p>CHEBI: NA</p>
- <p>KEGG: NA</p>
- <p>PUBCHEM: NA</p>
- </html>
- </notes>
- </species>
- <species id="M_hmbil_c" name="Hydroxymethylbilane" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C40H38N4O17">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C40H38N4O17</p>
- <p>CHEBI: 16645</p>
- <p>KEGG: C01024</p>
- <p>PUBCHEM: 4269</p>
- </html>
- </notes>
- </species>
- <species id="M_so4_e" name="Sulfate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="O4S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: O4S</p>
- <p>CHEBI: 16189</p>
- <p>KEGG: C00059</p>
- <p>PUBCHEM: 3359</p>
- </html>
- </notes>
- </species>
- <species id="M_murein5p5p5p_p" name="three-linked-disacharide-pentapeptide-murein-units-uncrosslinked-middle-of-chain" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C120H186N24O63">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C120H186N24O63</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_mn2_p" name="Mn2" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Mn">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: Mn</p>
- <p>CHEBI: 18291</p>
- <p>KEGG: C00034</p>
- <p>PUBCHEM: 3336</p>
- </html>
- </notes>
- </species>
- <species id="M_acgal_p" name="N-Acetyl-D-galactosamine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C8H15NO6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C8H15NO6</p>
- <p>CHEBI: 28037</p>
- <p>KEGG: C01132</p>
- <p>PUBCHEM: 4363</p>
- </html>
- </notes>
- </species>
- <species id="M_glucys_c" name="gamma-L-Glutamyl-L-cysteine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H13N2O5S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C8H13N2O5S</p>
- <p>CHEBI: 17515</p>
- <p>KEGG: C00669</p>
- <p>PUBCHEM: 3938</p>
- </html>
- </notes>
- </species>
- <species id="M_3hdcoa_c" name="S-3-Hydroxydecanoyl-CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C31H50N7O18P3S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C31H50N7O18P3S</p>
- <p>CHEBI: 28325</p>
- <p>KEGG: C05264</p>
- <p>PUBCHEM: 7651</p>
- </html>
- </notes>
- </species>
- <species id="M_urea_e" name="Urea" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="CH4N2O">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: CH4N2O</p>
- <p>CHEBI: 16199</p>
- <p>KEGG: C00086</p>
- <p>PUBCHEM: 3386</p>
- </html>
- </notes>
- </species>
- <species id="M_4mhetz_c" name="4-Methyl-5-2-hydroxyethyl-thiazole" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H9NOS">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H9NOS</p>
- <p>CHEBI: 17957</p>
- <p>KEGG: C04294</p>
- <p>PUBCHEM: 6954</p>
- </html>
- </notes>
- </species>
- <species id="M_octeACP_c" name="cis-octadec-11-enoyl-acyl-carrier-protein-n-C181" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C29H53N2O8PRS">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C29H53N2O8PRS</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_cdp4dh36ddglc_c" name="CDP-4-dehydro-3-6-dideoxy-D-glucose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C15H21N3O14P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C15H21N3O14P2</p>
- <p>CHEBI: 17817</p>
- <p>KEGG: C04297</p>
- <p>PUBCHEM: 6956</p>
- </html>
- </notes>
- </species>
- <species id="M_4mop_c" name="4-Methyl-2-oxopentanoate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H9O3</p>
- <p>CHEBI: 48430</p>
- <p>KEGG: C00233</p>
- <p>PUBCHEM: 3532</p>
- </html>
- </notes>
- </species>
- <species id="M_lpp_p" name="lipoprotein" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="XC16H30O1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: XC16H30O1</p>
- <p>CHEBI: 6495</p>
- <p>KEGG: C01834</p>
- <p>PUBCHEM: 4953</p>
- </html>
- </notes>
- </species>
- <species id="M_sarcs_c" name="Sarcosine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H7NO2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H7NO2</p>
- <p>CHEBI: 15611</p>
- <p>KEGG: C00213</p>
- <p>PUBCHEM: 3513</p>
- </html>
- </notes>
- </species>
- <species id="M_fcl__L_c" name="L-fuculose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H12O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H12O5</p>
- <p>CHEBI: 17617</p>
- <p>KEGG: C01721</p>
- <p>PUBCHEM: 4858</p>
- </html>
- </notes>
- </species>
- <species id="M_glu5p_c" name="L-Glutamate-5-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H8NO7P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H8NO7P</p>
- <p>CHEBI: 17798</p>
- <p>KEGG: C03287</p>
- <p>PUBCHEM: 6144</p>
- </html>
- </notes>
- </species>
- <species id="M_o2_c" name="O2" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: O2</p>
- <p>CHEBI: 15379</p>
- <p>KEGG: C00007</p>
- <p>PUBCHEM: 3309</p>
- </html>
- </notes>
- </species>
- <species id="M_utp_c" name="UTP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C9H11N2O15P3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H11N2O15P3</p>
- <p>CHEBI: 15713</p>
- <p>KEGG: C00075</p>
- <p>PUBCHEM: 3375</p>
- </html>
- </notes>
- </species>
- <species id="M_5dh4dglc_c" name="5-Dehydro-4-deoxy-D-glucarate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H6O7">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H6O7</p>
- <p>CHEBI: 42819</p>
- <p>KEGG: C00679</p>
- <p>PUBCHEM: 3948</p>
- </html>
- </notes>
- </species>
- <species id="M_o2_e" name="O2" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: O2</p>
- <p>CHEBI: 15379</p>
- <p>KEGG: C00007</p>
- <p>PUBCHEM: 3309</p>
- </html>
- </notes>
- </species>
- <species id="M_clpn2_ST_p" name="clpn2_ST_p" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: </p>
- <p>CHEBI: NA</p>
- <p>KEGG: NA</p>
- <p>PUBCHEM: NA</p>
- </html>
- </notes>
- </species>
- <species id="M_3dhsk_c" name="3-Dehydroshikimate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H7O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C7H7O5</p>
- <p>CHEBI: 30918</p>
- <p>KEGG: C02637</p>
- <p>PUBCHEM: 5617</p>
- </html>
- </notes>
- </species>
- <species id="M_o2_p" name="O2" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: O2</p>
- <p>CHEBI: 15379</p>
- <p>KEGG: C00007</p>
- <p>PUBCHEM: 3309</p>
- </html>
- </notes>
- </species>
- <species id="M_trptrna_c" name="L-Tryptophanyl-tRNA-Trp" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C11H11N2OR">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C11H11N2OR</p>
- <p>CHEBI: 29159</p>
- <p>KEGG: C03512</p>
- <p>PUBCHEM: 6322</p>
- </html>
- </notes>
- </species>
- <species id="M_acolipa_p" name="4-Amino-4-deoxy-L-arabinose-modified-core-oligosaccharide-lipid-A" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-9" fbc:chemicalFormula="C181H314N3O103P4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C181H314N3O103P4</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_btnso_c" name="d-biotin-d-sulfoxide" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H15N2O4S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H15N2O4S</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_2ddecg3p_p" name="2-dodecanoyl-sn-glycerol-3-phosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H30O7P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C15H30O7P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C03974</p>
- <p>PUBCHEM: 6693</p>
- </html>
- </notes>
- </species>
- <species id="M_acolipa_e" name="4-Amino-4-deoxy-L-arabinose-modified-core-oligosaccharide-lipid-A" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-9" fbc:chemicalFormula="C181H314N3O103P4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C181H314N3O103P4</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_u3aga_c" name="UDP-3-O-3-hydroxytetradecanoyl-N-acetylglucosamine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C31H51N3O19P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C31H51N3O19P2</p>
- <p>CHEBI: 28131</p>
- <p>KEGG: C04738</p>
- <p>PUBCHEM: 7309</p>
- </html>
- </notes>
- </species>
- <species id="M_2ddecg3p_c" name="2-dodecanoyl-sn-glycerol-3-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H30O7P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C15H30O7P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C03974</p>
- <p>PUBCHEM: 6693</p>
- </html>
- </notes>
- </species>
- <species id="M_unagamuf_c" name="Undecaprenyl-diphospho-N-acetylglucosamine-N-acetylmannosaminuronate-N-acetamido-4-6-dideoxy-D-galactose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C79H126N3O22P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C79H126N3O22P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_unagamuf_p" name="Undecaprenyl-diphospho-N-acetylglucosamine-N-acetylmannosaminuronate-N-acetamido-4-6-dideoxy-D-galactose" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C79H126N3O22P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C79H126N3O22P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_udcdp9Oag_p" name="Undecaprenyl-diphosphate-O-antigene-9x" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C271H450O160P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C271H450O160P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_LalaDgluMdap_p" name="L-alanine-D-glutamate-meso-2-6-diaminoheptanedioate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H25N4O8">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C15H25N4O8</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_pran_c" name="N-5-Phospho-D-ribosyl-anthranilate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C12H13NO9P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C12H13NO9P</p>
- <p>CHEBI: 7091</p>
- <p>KEGG: C04302</p>
- <p>PUBCHEM: 6961</p>
- </html>
- </notes>
- </species>
- <species id="M_LalaDgluMdap_e" name="L-alanine-D-glutamate-meso-2-6-diaminoheptanedioate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H25N4O8">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C15H25N4O8</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_galt1p_c" name="Galactitol-1-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H13O9P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H13O9P</p>
- <p>CHEBI: 28663</p>
- <p>KEGG: C06311</p>
- <p>PUBCHEM: 8547</p>
- </html>
- </notes>
- </species>
- <species id="M_LalaDgluMdap_c" name="L-alanine-D-glutamate-meso-2-6-diaminoheptanedioate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H25N4O8">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C15H25N4O8</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_h2o_c" name="H2O" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="H2O">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: H2O</p>
- <p>CHEBI: 15377</p>
- <p>KEGG: C00001</p>
- <p>PUBCHEM: 3303</p>
- </html>
- </notes>
- </species>
- <species id="M_hg2_p" name="Hg2" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Hg">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: Hg</p>
- <p>CHEBI: 16793</p>
- <p>KEGG: C00703</p>
- <p>PUBCHEM: 3970</p>
- </html>
- </notes>
- </species>
- <species id="M_h2o_e" name="H2O" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="H2O">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: H2O</p>
- <p>CHEBI: 15377</p>
- <p>KEGG: C00001</p>
- <p>PUBCHEM: 3303</p>
- </html>
- </notes>
- </species>
- <species id="M_trnasecys_c" name="tRNA-SeCys" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="R">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: R</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_pe181_p" name="phosphatidylethanolamine-dioctadec-11-enoyl-n-C181" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C41H78N1O8P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C41H78N1O8P1</p>
- <p>CHEBI: 16038</p>
- <p>KEGG: C00350</p>
- <p>PUBCHEM: 3643</p>
- </html>
- </notes>
- </species>
- <species id="M_nac_e" name="Nicotinate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H4NO2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H4NO2</p>
- <p>CHEBI: 15940</p>
- <p>KEGG: C00253</p>
- <p>PUBCHEM: 3552</p>
- </html>
- </notes>
- </species>
- <species id="M_nac_c" name="Nicotinate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H4NO2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H4NO2</p>
- <p>CHEBI: 15940</p>
- <p>KEGG: C00253</p>
- <p>PUBCHEM: 3552</p>
- </html>
- </notes>
- </species>
- <species id="M_hg2_c" name="Hg2" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Hg">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: Hg</p>
- <p>CHEBI: 16793</p>
- <p>KEGG: C00703</p>
- <p>PUBCHEM: 3970</p>
- </html>
- </notes>
- </species>
- <species id="M_h2o_p" name="H2O" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="H2O">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: H2O</p>
- <p>CHEBI: 15377</p>
- <p>KEGG: C00001</p>
- <p>PUBCHEM: 3303</p>
- </html>
- </notes>
- </species>
- <species id="M_hg2_e" name="Hg2" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Hg">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: Hg</p>
- <p>CHEBI: 16793</p>
- <p>KEGG: C00703</p>
- <p>PUBCHEM: 3970</p>
- </html>
- </notes>
- </species>
- <species id="M_pe181_c" name="phosphatidylethanolamine-dioctadec-11-enoyl-n-C181" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C41H78N1O8P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C41H78N1O8P1</p>
- <p>CHEBI: 16038</p>
- <p>KEGG: C00350</p>
- <p>PUBCHEM: 3643</p>
- </html>
- </notes>
- </species>
- <species id="M_prlp_c" name="5-5-phospho-1-deoxyribulos-1-ylamino-methylideneamino-1-5-phosphoribosyl-imidazole-4-carboxamide" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C15H21N5O15P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C15H21N5O15P2</p>
- <p>CHEBI: 27735</p>
- <p>KEGG: C04916</p>
- <p>PUBCHEM: 7464</p>
- </html>
- </notes>
- </species>
- <species id="M_ps161_c" name="phosphatidylserine-dihexadec-9-enoyl-n-C161" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C38H69N1O10P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C38H69N1O10P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C02737</p>
- <p>PUBCHEM: 5698</p>
- </html>
- </notes>
- </species>
- <species id="M_pgp181_p" name="Phosphatidylglycerophosphate-dioctadec-11-enoyl-n-C181" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C42H77O13P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C42H77O13P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C03892</p>
- <p>PUBCHEM: 6624</p>
- </html>
- </notes>
- </species>
- <species id="M_malttr_p" name="Maltotriose" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C18H32O16">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C18H32O16</p>
- <p>CHEBI: 27931</p>
- <p>KEGG: C01835</p>
- <p>PUBCHEM: 4954</p>
- </html>
- </notes>
- </species>
- <species id="M_pgp181_c" name="Phosphatidylglycerophosphate-dioctadec-11-enoyl-n-C181" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C42H77O13P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C42H77O13P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C03892</p>
- <p>PUBCHEM: 6624</p>
- </html>
- </notes>
- </species>
- <species id="M_malttr_e" name="Maltotriose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C18H32O16">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C18H32O16</p>
- <p>CHEBI: 27931</p>
- <p>KEGG: C01835</p>
- <p>PUBCHEM: 4954</p>
- </html>
- </notes>
- </species>
- <species id="M_dsbdrd_c" name="fused-thioldisulfide-interchange-protein-reduced" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="XH2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: XH2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_malttr_c" name="Maltotriose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C18H32O16">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C18H32O16</p>
- <p>CHEBI: 27931</p>
- <p>KEGG: C01835</p>
- <p>PUBCHEM: 4954</p>
- </html>
- </notes>
- </species>
- <species id="M_2pg_e" name="D-Glycerate-2-phosphate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C3H4O7P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H4O7P</p>
- <p>CHEBI: 17835</p>
- <p>KEGG: C00631</p>
- <p>PUBCHEM: 3904</p>
- </html>
- </notes>
- </species>
- <species id="M_12dgr180_p" name="1-2-Diacyl-sn-glycerol-dioctadecanoyl-n-C180" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C39H76O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C39H76O5</p>
- <p>CHEBI: 17815</p>
- <p>KEGG: C00641</p>
- <p>PUBCHEM: 3914</p>
- </html>
- </notes>
- </species>
- <species id="M_2pg_c" name="D-Glycerate-2-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C3H4O7P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H4O7P</p>
- <p>CHEBI: 17835</p>
- <p>KEGG: C00631</p>
- <p>PUBCHEM: 3904</p>
- </html>
- </notes>
- </species>
- <species id="M_3hhcoa_c" name="S-3-Hydroxyhexanoyl-CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C27H42N7O18P3S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C27H42N7O18P3S</p>
- <p>CHEBI: 28276</p>
- <p>KEGG: C05268</p>
- <p>PUBCHEM: 7655</p>
- </html>
- </notes>
- </species>
- <species id="M_ggagicolipa_c" name="glucosyl-galactosyl-glucosyl-inner-core-oligosaccharide-lipid-A" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-11" fbc:chemicalFormula="C163H281N2O89P4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C163H281N2O89P4</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_ttdcea_p" name="tetradecenoate-n-C141" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H25O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C14H25O2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_uagmda_c" name="Undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2-6-diaminopimeloyl-D-alanyl-D-alanine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C87H139N7O23P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C87H139N7O23P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C05897</p>
- <p>PUBCHEM: 8185</p>
- </html>
- </notes>
- </species>
- <species id="M_12dgr180_c" name="1-2-Diacyl-sn-glycerol-dioctadecanoyl-n-C180" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C39H76O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C39H76O5</p>
- <p>CHEBI: 17815</p>
- <p>KEGG: C00641</p>
- <p>PUBCHEM: 3914</p>
- </html>
- </notes>
- </species>
- <species id="M_2pg_p" name="D-Glycerate-2-phosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C3H4O7P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H4O7P</p>
- <p>CHEBI: 17835</p>
- <p>KEGG: C00631</p>
- <p>PUBCHEM: 3904</p>
- </html>
- </notes>
- </species>
- <species id="M_glycogen_c" name="glycogen" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H10O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H10O5</p>
- <p>CHEBI: 28087</p>
- <p>KEGG: C00182</p>
- <p>PUBCHEM: 3482</p>
- </html>
- </notes>
- </species>
- <species id="M_ttdcea_e" name="tetradecenoate-n-C141" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H25O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C14H25O2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_ttdcea_c" name="tetradecenoate-n-C141" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H25O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C14H25O2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_glyc3p_c" name="Glycerol-3-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H7O6P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H7O6P</p>
- <p>CHEBI: 15978</p>
- <p>KEGG: C00093</p>
- <p>PUBCHEM: 3393</p>
- </html>
- </notes>
- </species>
- <species id="M_glyc3p_e" name="Glycerol-3-phosphate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H7O6P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H7O6P</p>
- <p>CHEBI: 15978</p>
- <p>KEGG: C00093</p>
- <p>PUBCHEM: 3393</p>
- </html>
- </notes>
- </species>
- <species id="M_thrp_p" name="L-Threonine-O-3-phosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H8NO6P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H8NO6P</p>
- <p>CHEBI: 37525</p>
- <p>KEGG: C12147</p>
- <p>PUBCHEM: 14294</p>
- </html>
- </notes>
- </species>
- <species id="M_4mpetz_c" name="4-Methyl-5-2-phosphoethyl-thiazole" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H8NO4PS">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H8NO4PS</p>
- <p>CHEBI: 17857</p>
- <p>KEGG: C04327</p>
- <p>PUBCHEM: 6980</p>
- </html>
- </notes>
- </species>
- <species id="M_succoa_c" name="Succinyl-CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C25H35N7O19P3S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C25H35N7O19P3S</p>
- <p>CHEBI: 15380</p>
- <p>KEGG: C00091</p>
- <p>PUBCHEM: 3391</p>
- </html>
- </notes>
- </species>
- <species id="M_2ddg6p_c" name="2-Dehydro-3-deoxy-D-gluconate-6-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H8O9P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H8O9P</p>
- <p>CHEBI: 15925</p>
- <p>KEGG: C04442</p>
- <p>PUBCHEM: 7071</p>
- </html>
- </notes>
- </species>
- <species id="M_cdpdtdec7eg_c" name="CDP-1-2-ditetradec-7-enoylglycerol" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C40H67N3O15P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C40H67N3O15P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C00269</p>
- <p>PUBCHEM: 3567</p>
- </html>
- </notes>
- </species>
- <species id="M_thrp_e" name="L-Threonine-O-3-phosphate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H8NO6P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H8NO6P</p>
- <p>CHEBI: 37525</p>
- <p>KEGG: C12147</p>
- <p>PUBCHEM: 14294</p>
- </html>
- </notes>
- </species>
- <species id="M_glyc3p_p" name="Glycerol-3-phosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H7O6P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H7O6P</p>
- <p>CHEBI: 15978</p>
- <p>KEGG: C00093</p>
- <p>PUBCHEM: 3393</p>
- </html>
- </notes>
- </species>
- <species id="M_thrp_c" name="L-Threonine-O-3-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H8NO6P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H8NO6P</p>
- <p>CHEBI: 37525</p>
- <p>KEGG: C12147</p>
- <p>PUBCHEM: 14294</p>
- </html>
- </notes>
- </species>
- <species id="M_skm_c" name="Shikimate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H9O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C7H9O5</p>
- <p>CHEBI: 16119</p>
- <p>KEGG: C00493</p>
- <p>PUBCHEM: 3776</p>
- </html>
- </notes>
- </species>
- <species id="M_1pyr5c_c" name="1-Pyrroline-5-carboxylate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H6NO2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H6NO2</p>
- <p>CHEBI: 371</p>
- <p>KEGG: C03912</p>
- <p>PUBCHEM: 6642</p>
- </html>
- </notes>
- </species>
- <species id="M_10fthf_c" name="10-Formyltetrahydrofolate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H21N7O7">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C20H21N7O7</p>
- <p>CHEBI: 15637</p>
- <p>KEGG: C00234</p>
- <p>PUBCHEM: 3533</p>
- </html>
- </notes>
- </species>
- <species id="M_idon__L_c" name="L-Idonate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O7">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H11O7</p>
- <p>CHEBI: 17796</p>
- <p>KEGG: C00770</p>
- <p>PUBCHEM: 4032</p>
- </html>
- </notes>
- </species>
- <species id="M_dca_p" name="Decanoate-n-C100" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H19O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H19O2</p>
- <p>CHEBI: 30813</p>
- <p>KEGG: C01571</p>
- <p>PUBCHEM: 4728</p>
- </html>
- </notes>
- </species>
- <species id="M_idon__L_e" name="L-Idonate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O7">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H11O7</p>
- <p>CHEBI: 17796</p>
- <p>KEGG: C00770</p>
- <p>PUBCHEM: 4032</p>
- </html>
- </notes>
- </species>
- <species id="M_xu5p__D_c" name="D-Xylulose-5-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H9O8P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H9O8P</p>
- <p>CHEBI: 16332</p>
- <p>KEGG: C00231</p>
- <p>PUBCHEM: 3530</p>
- </html>
- </notes>
- </species>
- <species id="M_3ooctACP_c" name="3-Oxooctanoyl-acyl-carrier-protein" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H33N2O9PRS">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C19H33N2O9PRS</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C05750</p>
- <p>PUBCHEM: 8045</p>
- </html>
- </notes>
- </species>
- <species id="M_sbt6p_c" name="D-Sorbitol-6-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H13O9P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H13O9P</p>
- <p>CHEBI: 17044</p>
- <p>KEGG: C01096</p>
- <p>PUBCHEM: 4331</p>
- </html>
- </notes>
- </species>
- <species id="M_dca_e" name="Decanoate-n-C100" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H19O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H19O2</p>
- <p>CHEBI: 30813</p>
- <p>KEGG: C01571</p>
- <p>PUBCHEM: 4728</p>
- </html>
- </notes>
- </species>
- <species id="M_idon__L_p" name="L-Idonate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O7">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H11O7</p>
- <p>CHEBI: 17796</p>
- <p>KEGG: C00770</p>
- <p>PUBCHEM: 4032</p>
- </html>
- </notes>
- </species>
- <species id="M_dca_c" name="Decanoate-n-C100" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H19O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H19O2</p>
- <p>CHEBI: 30813</p>
- <p>KEGG: C01571</p>
- <p>PUBCHEM: 4728</p>
- </html>
- </notes>
- </species>
- <species id="M_apg140_c" name="acyl-phosphatidylglycerol-n-C140" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C48H92O11P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C48H92O11P</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_ribflv_c" name="Riboflavin" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C17H20N4O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C17H20N4O6</p>
- <p>CHEBI: 17015</p>
- <p>KEGG: C00255</p>
- <p>PUBCHEM: 3554</p>
- </html>
- </notes>
- </species>
- <species id="M_rbflvrd_c" name="Reduced-riboflavin" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C17H22N4O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C17H22N4O6</p>
- <p>CHEBI: 8798</p>
- <p>KEGG: C01007</p>
- <p>PUBCHEM: 4252</p>
- </html>
- </notes>
- </species>
- <species id="M_gal__bD_p" name="beta-D-Galactose" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H12O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H12O6</p>
- <p>CHEBI: 28260</p>
- <p>KEGG: C01582</p>
- <p>PUBCHEM: 4738</p>
- </html>
- </notes>
- </species>
- <species id="M_gbbtn_e" name="gamma-butyrobetaine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C7H15NO2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C7H15NO2</p>
- <p>CHEBI: 1941</p>
- <p>KEGG: C01181</p>
- <p>PUBCHEM: 4408</p>
- </html>
- </notes>
- </species>
- <species id="M_t3c9palmeACP_c" name="trans-3-cis-9-palmitoleoyl-acyl-carrier-protein" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C27H47N2O8PRS">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C27H47N2O8PRS</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_feenter_p" name="Fe-enterobactin" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="3" fbc:chemicalFormula="C30H27FeN3O15">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C30H27FeN3O15</p>
- <p>CHEBI: 28199</p>
- <p>KEGG: C06230</p>
- <p>PUBCHEM: 8473</p>
- </html>
- </notes>
- </species>
- <species id="M_feenter_e" name="Fe-enterobactin" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="3" fbc:chemicalFormula="C30H27FeN3O15">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C30H27FeN3O15</p>
- <p>CHEBI: 28199</p>
- <p>KEGG: C06230</p>
- <p>PUBCHEM: 8473</p>
- </html>
- </notes>
- </species>
- <species id="M_feenter_c" name="Fe-enterobactin" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="3" fbc:chemicalFormula="C30H27FeN3O15">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C30H27FeN3O15</p>
- <p>CHEBI: 28199</p>
- <p>KEGG: C06230</p>
- <p>PUBCHEM: 8473</p>
- </html>
- </notes>
- </species>
- <species id="M_gbbtn_p" name="gamma-butyrobetaine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C7H15NO2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C7H15NO2</p>
- <p>CHEBI: 1941</p>
- <p>KEGG: C01181</p>
- <p>PUBCHEM: 4408</p>
- </html>
- </notes>
- </species>
- <species id="M_dtdprmn_c" name="dTDP-L-rhamnose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C16H24N2O15P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C16H24N2O15P2</p>
- <p>CHEBI: 15774</p>
- <p>KEGG: C03319</p>
- <p>PUBCHEM: 6171</p>
- </html>
- </notes>
- </species>
- <species id="M_25aics_c" name="S-2-5-Amino-1-5-phospho-D-ribosyl-imidazole-4-carboxamidosuccinate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C13H15N4O12P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C13H15N4O12P</p>
- <p>CHEBI: 18319</p>
- <p>KEGG: C04823</p>
- <p>PUBCHEM: 7384</p>
- </html>
- </notes>
- </species>
- <species id="M_kphphhlipa_c" name="kdo-phospho-heptosyl-phospho-heptosyl-heptosyl-kdo2-lipidA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-11" fbc:chemicalFormula="C139H241N2O70P4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C139H241N2O70P4</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_udcdp14Oag_p" name="Undecaprenyl-diphosphate-O-antigene-14x" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C391H650O245P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C391H650O245P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_uaccg_c" name="UDP-N-acetyl-3-O-1-carboxyvinyl-D-glucosamine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C20H26N3O19P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C20H26N3O19P2</p>
- <p>CHEBI: 16435</p>
- <p>KEGG: C04631</p>
- <p>PUBCHEM: 7220</p>
- </html>
- </notes>
- </species>
- <species id="M_h2s_e" name="Hydrogen-sulfide" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="H2S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: H2S</p>
- <p>CHEBI: 16136</p>
- <p>KEGG: C00283</p>
- <p>PUBCHEM: 3578</p>
- </html>
- </notes>
- </species>
- <species id="M_kdo2lipid4_p" name="KDO-2-lipid-IV-A" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C84H148N2O37P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C84H148N2O37P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C06025</p>
- <p>PUBCHEM: 8297</p>
- </html>
- </notes>
- </species>
- <species id="M_h2s_c" name="Hydrogen-sulfide" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="H2S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: H2S</p>
- <p>CHEBI: 16136</p>
- <p>KEGG: C00283</p>
- <p>PUBCHEM: 3578</p>
- </html>
- </notes>
- </species>
- <species id="M_clpn180_p" name="cardiolipin-tetraoctadecanoyl-n-C180" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C81H156O17P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C81H156O17P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C05980</p>
- <p>PUBCHEM: 8259</p>
- </html>
- </notes>
- </species>
- <species id="M_kdo2lipid4_c" name="KDO-2-lipid-IV-A" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C84H148N2O37P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C84H148N2O37P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C06025</p>
- <p>PUBCHEM: 8297</p>
- </html>
- </notes>
- </species>
- <species id="M_h2s_p" name="Hydrogen-sulfide" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="H2S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: H2S</p>
- <p>CHEBI: 16136</p>
- <p>KEGG: C00283</p>
- <p>PUBCHEM: 3578</p>
- </html>
- </notes>
- </species>
- <species id="M_kdo2lipid4_e" name="KDO-2-lipid-IV-A" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C84H148N2O37P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C84H148N2O37P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C06025</p>
- <p>PUBCHEM: 8297</p>
- </html>
- </notes>
- </species>
- <species id="M_cu_e" name="Cu" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="Cu">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: Cu</p>
- <p>CHEBI: 49552</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_scl_c" name="sirohydrochlorin" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-7" fbc:chemicalFormula="C42H39N4O16">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C42H39N4O16</p>
- <p>CHEBI: 18023</p>
- <p>KEGG: C05778</p>
- <p>PUBCHEM: 8073</p>
- </html>
- </notes>
- </species>
- <species id="M_cu_c" name="Cu" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="Cu">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: Cu</p>
- <p>CHEBI: 49552</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_dtdp4addg_c" name="dTDP-4-amino-4-6-dideoxy-D-galactose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H26N3O14P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C16H26N3O14P2</p>
- <p>CHEBI: 15952</p>
- <p>KEGG: C04268</p>
- <p>PUBCHEM: 6932</p>
- </html>
- </notes>
- </species>
- <species id="M_lgt__S_c" name="R-S-Lactoylglutathione" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H20N3O8S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C13H20N3O8S</p>
- <p>CHEBI: 15694</p>
- <p>KEGG: C03451</p>
- <p>PUBCHEM: 6272</p>
- </html>
- </notes>
- </species>
- <species id="M_asptrna_c" name="L-Aspartyl-tRNA-Asp" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C4H5NO3R">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H5NO3R</p>
- <p>CHEBI: 29158</p>
- <p>KEGG: C02984</p>
- <p>PUBCHEM: 5893</p>
- </html>
- </notes>
- </species>
- <species id="M_cu_p" name="Cu" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="Cu">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: Cu</p>
- <p>CHEBI: 49552</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_myrsACP_c" name="Myristoyl-ACP-n-C140ACP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C25H47N2O8PRS">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C25H47N2O8PRS</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C05761</p>
- <p>PUBCHEM: 8056</p>
- </html>
- </notes>
- </species>
- <species id="M_cdpdtdecg_c" name="CDP-1-2-ditetradecanoylglycerol" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C40H71N3O15P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C40H71N3O15P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C00269</p>
- <p>PUBCHEM: 3567</p>
- </html>
- </notes>
- </species>
- <species id="M_feroxBfe_p" name="Ferrioxamine-B-fe" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C25H45FeN6O8">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C25H45FeN6O8</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 123851</p>
- </html>
- </notes>
- </species>
- <species id="M_mana_c" name="D-Mannonate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O7">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H11O7</p>
- <p>CHEBI: 17767 33076</p>
- <p>KEGG: C00514</p>
- <p>PUBCHEM: 3797</p>
- </html>
- </notes>
- </species>
- <species id="M_manglyc_e" name="2-alpha-D-Mannosyl-D-glycerate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H15O9">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H15O9</p>
- <p>CHEBI: 15847</p>
- <p>KEGG: C11544</p>
- <p>PUBCHEM: 13711</p>
- </html>
- </notes>
- </species>
- <species id="M_3hocoa_c" name="S-3-Hydroxyoctanoyl-CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C29H46N7O18P3S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C29H46N7O18P3S</p>
- <p>CHEBI: 28632</p>
- <p>KEGG: C05266</p>
- <p>PUBCHEM: 7653</p>
- </html>
- </notes>
- </species>
- <species id="M_ps140_c" name="phosphatidylserine-ditetradecanoyl-n-C140" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C34H65N1O10P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C34H65N1O10P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C02737</p>
- <p>PUBCHEM: 5698</p>
- </html>
- </notes>
- </species>
- <species id="M_feroxBfe_e" name="Ferrioxamine-B-fe" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C25H45FeN6O8">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C25H45FeN6O8</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 123851</p>
- </html>
- </notes>
- </species>
- <species id="M_s_c" name="Sulfur" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: S</p>
- <p>CHEBI: 17909</p>
- <p>KEGG: C00087</p>
- <p>PUBCHEM: 3387</p>
- </html>
- </notes>
- </species>
- <species id="M_thf_c" name="5-6-7-8-Tetrahydrofolate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C19H21N7O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C19H21N7O6</p>
- <p>CHEBI: 15635</p>
- <p>KEGG: C00101</p>
- <p>PUBCHEM: 3401</p>
- </html>
- </notes>
- </species>
- <species id="M_feroxBfe_c" name="Ferrioxamine-B-fe" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C25H45FeN6O8">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C25H45FeN6O8</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 123851</p>
- </html>
- </notes>
- </species>
- <species id="M_anhm_c" name="1-6-anhydrous-N-Acetylmuramate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H16NO7">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C11H16NO7</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_ctbtcoa_c" name="crotonobetainyl-CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C28H44N8O17P3S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C28H44N8O17P3S</p>
- <p>CHEBI: 28684</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 591??6196</p>
- </html>
- </notes>
- </species>
- <species id="M_manglyc_p" name="2-alpha-D-Mannosyl-D-glycerate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H15O9">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H15O9</p>
- <p>CHEBI: 15847</p>
- <p>KEGG: C11544</p>
- <p>PUBCHEM: 13711</p>
- </html>
- </notes>
- </species>
- <species id="M_xtsn_p" name="Xanthosine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C10H12N4O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H12N4O6</p>
- <p>CHEBI: 18107</p>
- <p>KEGG: C01762</p>
- <p>PUBCHEM: 4895</p>
- </html>
- </notes>
- </species>
- <species id="M_apg181_c" name="acyl-phosphatidylglycerol-n-C181" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C60H110O11P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C60H110O11P</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_3hddcoa_c" name="S-3-Hydroxydodecanoyl-CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H54N7O18P3S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C33H54N7O18P3S</p>
- <p>CHEBI: 27668</p>
- <p>KEGG: C05262</p>
- <p>PUBCHEM: 7649</p>
- </html>
- </notes>
- </species>
- <species id="M_feoxam__un_c" name="ferroxamine-minus-Fe-3" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C25H46N6O8">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C25H46N6O8</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_3haACP_c" name="3R-3-Hydroxyacyl-acyl-carrier-protein" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H27N2O9PRS">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C15H27N2O9PRS</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C01271</p>
- <p>PUBCHEM: 4490</p>
- </html>
- </notes>
- </species>
- <species id="M_acmum_e" name="N-Acetylmuramate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H18NO8">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C11H18NO8</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C02713</p>
- <p>PUBCHEM: 5676</p>
- </html>
- </notes>
- </species>
- <species id="M_pppn_c" name="Phenylpropanoate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H9O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H9O2</p>
- <p>CHEBI: 28631</p>
- <p>KEGG: C05629</p>
- <p>PUBCHEM: 7943</p>
- </html>
- </notes>
- </species>
- <species id="M_pppn_e" name="Phenylpropanoate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H9O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H9O2</p>
- <p>CHEBI: 28631</p>
- <p>KEGG: C05629</p>
- <p>PUBCHEM: 7943</p>
- </html>
- </notes>
- </species>
- <species id="M_dump_e" name="dUMP" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H11N2O8P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H11N2O8P</p>
- <p>CHEBI: 17622</p>
- <p>KEGG: C00365</p>
- <p>PUBCHEM: 3656</p>
- </html>
- </notes>
- </species>
- <species id="M_pppn_p" name="Phenylpropanoate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H9O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H9O2</p>
- <p>CHEBI: 28631</p>
- <p>KEGG: C05629</p>
- <p>PUBCHEM: 7943</p>
- </html>
- </notes>
- </species>
- <species id="M_hdeACP_c" name="cis-hexadec-9-enoyl-acyl-carrier-protein-n-C161" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C27H49N2O8PRS">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C27H49N2O8PRS</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_dxyl_e" name="dxyl_e" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: </p>
- <p>CHEBI: 28354</p>
- <p>KEGG: C06257</p>
- <p>PUBCHEM: 8496</p>
- </html>
- </notes>
- </species>
- <species id="M_dxyl_c" name="1-deoxy-D-xylulose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H10O4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H10O4</p>
- <p>CHEBI: 28354</p>
- <p>KEGG: C06257</p>
- <p>PUBCHEM: 8496</p>
- </html>
- </notes>
- </species>
- <species id="M_sl26da_c" name="N-Succinyl-LL-2-6-diaminoheptanedioate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C11H16N2O7">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C11H16N2O7</p>
- <p>CHEBI: 17279</p>
- <p>KEGG: C04421</p>
- <p>PUBCHEM: 7053</p>
- </html>
- </notes>
- </species>
- <species id="M_dxyl_p" name="dxyl_p" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: </p>
- <p>CHEBI: 28354</p>
- <p>KEGG: C06257</p>
- <p>PUBCHEM: 8496</p>
- </html>
- </notes>
- </species>
- <species id="M_thym_c" name="Thymine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H6N2O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H6N2O2</p>
- <p>CHEBI: 17821</p>
- <p>KEGG: C00178</p>
- <p>PUBCHEM: 3478</p>
- </html>
- </notes>
- </species>
- <species id="M_acgam_c" name="N-Acetyl-D-glucosamine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C8H15NO6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C8H15NO6</p>
- <p>CHEBI: 17411</p>
- <p>KEGG: C00140</p>
- <p>PUBCHEM: 3440</p>
- </html>
- </notes>
- </species>
- <species id="M_acmanap_c" name="N-Acetyl-D-mannosamine-6-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C8H14NO9P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C8H14NO9P</p>
- <p>CHEBI: 28273</p>
- <p>KEGG: C04257</p>
- <p>PUBCHEM: 6922</p>
- </html>
- </notes>
- </species>
- <species id="M_dimp_p" name="dIMP" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H11N4O7P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H11N4O7P</p>
- <p>CHEBI: 28806</p>
- <p>KEGG: C06196</p>
- <p>PUBCHEM: 8446</p>
- </html>
- </notes>
- </species>
- <species id="M_ichor_c" name="Isochorismate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H8O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H8O6</p>
- <p>CHEBI: 17582 29780</p>
- <p>KEGG: C00885</p>
- <p>PUBCHEM: 4141</p>
- </html>
- </notes>
- </species>
- <species id="M_no_p" name="Nitric-oxide" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="NO">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: NO</p>
- <p>CHEBI: 16480</p>
- <p>KEGG: C00533</p>
- <p>PUBCHEM: 3815</p>
- </html>
- </notes>
- </species>
- <species id="M_3hcmrs7eACP_c" name="R-3-hydroxy-cis-myristol-7-eoyl-acyl-carrier-protein" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C25H45N2O9PRS">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C25H45N2O9PRS</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_feroxG_c" name="Ferrioxamine-G" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C27H49N6O10">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C27H49N6O10</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_feroxG_e" name="Ferrioxamine-G" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C27H49N6O10">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C27H49N6O10</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_rib__D_p" name="D-Ribose" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H10O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H10O5</p>
- <p>CHEBI: 47013</p>
- <p>KEGG: C00121</p>
- <p>PUBCHEM: 3421</p>
- </html>
- </notes>
- </species>
- <species id="M_no_e" name="Nitric-oxide" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="NO">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: NO</p>
- <p>CHEBI: 16480</p>
- <p>KEGG: C00533</p>
- <p>PUBCHEM: 3815</p>
- </html>
- </notes>
- </species>
- <species id="M_dimp_c" name="dIMP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H11N4O7P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H11N4O7P</p>
- <p>CHEBI: 28806</p>
- <p>KEGG: C06196</p>
- <p>PUBCHEM: 8446</p>
- </html>
- </notes>
- </species>
- <species id="M_dimp_e" name="dIMP" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H11N4O7P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H11N4O7P</p>
- <p>CHEBI: 28806</p>
- <p>KEGG: C06196</p>
- <p>PUBCHEM: 8446</p>
- </html>
- </notes>
- </species>
- <species id="M_no_c" name="Nitric-oxide" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="NO">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: NO</p>
- <p>CHEBI: 16480</p>
- <p>KEGG: C00533</p>
- <p>PUBCHEM: 3815</p>
- </html>
- </notes>
- </species>
- <species id="M_feroxG_p" name="Ferrioxamine-G" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C27H49N6O10">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C27H49N6O10</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_rib__D_e" name="D-Ribose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H10O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H10O5</p>
- <p>CHEBI: 47013</p>
- <p>KEGG: C00121</p>
- <p>PUBCHEM: 3421</p>
- </html>
- </notes>
- </species>
- <species id="M_rib__D_c" name="D-Ribose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H10O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H10O5</p>
- <p>CHEBI: 47013</p>
- <p>KEGG: C00121</p>
- <p>PUBCHEM: 3421</p>
- </html>
- </notes>
- </species>
- <species id="M_dgdp_c" name="dGDP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H12N5O10P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H12N5O10P2</p>
- <p>CHEBI: 28862</p>
- <p>KEGG: C00361</p>
- <p>PUBCHEM: 3652</p>
- </html>
- </notes>
- </species>
- <species id="M_sertrna__sec___c" name="L-Seryl-tRNA-Sec" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C3H6NO2R">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H6NO2R</p>
- <p>CHEBI: 13170</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_trnamet_c" name="tRNA-Met" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="R">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: R</p>
- <p>CHEBI: 29173</p>
- <p>KEGG: C01647</p>
- <p>PUBCHEM: 4796</p>
- </html>
- </notes>
- </species>
- <species id="M_adocbip_c" name="Adenosyl-cobinamide-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C58H83CoN16O14P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C58H83CoN16O14P</p>
- <p>CHEBI: 2481</p>
- <p>KEGG: C06509</p>
- <p>PUBCHEM: 8740</p>
- </html>
- </notes>
- </species>
- <species id="M_thym_p" name="Thymine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H6N2O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H6N2O2</p>
- <p>CHEBI: 17821</p>
- <p>KEGG: C00178</p>
- <p>PUBCHEM: 3478</p>
- </html>
- </notes>
- </species>
- <species id="M_2oph_c" name="2-Octaprenylphenol" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C46H70O">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C46H70O</p>
- <p>CHEBI: 40407</p>
- <p>KEGG: C05810</p>
- <p>PUBCHEM: 8105</p>
- </html>
- </notes>
- </species>
- <species id="M_thm_c" name="Thiamin" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C12H17N4OS">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C12H17N4OS</p>
- <p>CHEBI: 18385</p>
- <p>KEGG: C00378</p>
- <p>PUBCHEM: 3668</p>
- </html>
- </notes>
- </species>
- <species id="M_udcpdp_p" name="Undecaprenyl-diphosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C55H89O7P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C55H89O7P2</p>
- <p>CHEBI: 17047</p>
- <p>KEGG: C03543</p>
- <p>PUBCHEM: 6347</p>
- </html>
- </notes>
- </species>
- <species id="M_thm_e" name="Thiamin" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C12H17N4OS">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C12H17N4OS</p>
- <p>CHEBI: 18385</p>
- <p>KEGG: C00378</p>
- <p>PUBCHEM: 3668</p>
- </html>
- </notes>
- </species>
- <species id="M_fe2_c" name="Fe2" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Fe">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: Fe</p>
- <p>CHEBI: 18248</p>
- <p>KEGG: C00023</p>
- <p>PUBCHEM: 3325</p>
- </html>
- </notes>
- </species>
- <species id="M_trnahis_c" name="tRNA-His" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="R">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: R</p>
- <p>CHEBI: 29178</p>
- <p>KEGG: C01643</p>
- <p>PUBCHEM: 4792</p>
- </html>
- </notes>
- </species>
- <species id="M_fe2_e" name="Fe2" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Fe">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: Fe</p>
- <p>CHEBI: 18248</p>
- <p>KEGG: C00023</p>
- <p>PUBCHEM: 3325</p>
- </html>
- </notes>
- </species>
- <species id="M_udcpdp_c" name="Undecaprenyl-diphosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C55H89O7P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C55H89O7P2</p>
- <p>CHEBI: 17047</p>
- <p>KEGG: C03543</p>
- <p>PUBCHEM: 6347</p>
- </html>
- </notes>
- </species>
- <species id="M_thm_p" name="Thiamin" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C12H17N4OS">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C12H17N4OS</p>
- <p>CHEBI: 18385</p>
- <p>KEGG: C00378</p>
- <p>PUBCHEM: 3668</p>
- </html>
- </notes>
- </species>
- <species id="M_unagamu_c" name="Undecaprenyl-diphospho-N-acetylglucosamine-N-acetylmannosaminuronate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C71H113N2O18P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C71H113N2O18P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_fe2_p" name="Fe2" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Fe">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: Fe</p>
- <p>CHEBI: 18248</p>
- <p>KEGG: C00023</p>
- <p>PUBCHEM: 3325</p>
- </html>
- </notes>
- </species>
- <species id="M_udcpo5_c" name="udcpo5_c" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: </p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_tet_e" name="Tetrathionate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="O6S4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: O6S4</p>
- <p>CHEBI: 15226 16853</p>
- <p>KEGG: C02084</p>
- <p>PUBCHEM: 5169</p>
- </html>
- </notes>
- </species>
- <species id="M_12dgr120_c" name="1-2-Diacyl-sn-glycerol-didodecanoyl-n-C120" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C27H52O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C27H52O5</p>
- <p>CHEBI: 17815</p>
- <p>KEGG: C00641</p>
- <p>PUBCHEM: 3914</p>
- </html>
- </notes>
- </species>
- <species id="M_udcpo5_p" name="udcpo5_p" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: </p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_udcdp5Oag_p" name="Undecaprenyl-diphosphate-O-antigene-5x" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C175H290O92P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C175H290O92P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_12dgr120_p" name="1-2-Diacyl-sn-glycerol-didodecanoyl-n-C120" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C27H52O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C27H52O5</p>
- <p>CHEBI: 17815</p>
- <p>KEGG: C00641</p>
- <p>PUBCHEM: 3914</p>
- </html>
- </notes>
- </species>
- <species id="M_leu__L_c" name="L-Leucine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H13NO2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H13NO2</p>
- <p>CHEBI: 15603</p>
- <p>KEGG: C00123</p>
- <p>PUBCHEM: 3423</p>
- </html>
- </notes>
- </species>
- <species id="M_leu__L_e" name="L-Leucine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H13NO2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H13NO2</p>
- <p>CHEBI: 15603</p>
- <p>KEGG: C00123</p>
- <p>PUBCHEM: 3423</p>
- </html>
- </notes>
- </species>
- <species id="M_2odec11eg3p_c" name="2-octadec-11-enoyl-sn-glycerol-3-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H40O7P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C21H40O7P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C03974</p>
- <p>PUBCHEM: 6693</p>
- </html>
- </notes>
- </species>
- <species id="M_2agpg181_c" name="2-Acyl-sn-glycero-3-phosphoglycerol-n-C181" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H46O9P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C24H46O9P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_adocbl_c" name="Adenosylcobalamin" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C72H100CoN18O17P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C72H100CoN18O17P</p>
- <p>CHEBI: 18408</p>
- <p>KEGG: C00194</p>
- <p>PUBCHEM: 3494</p>
- </html>
- </notes>
- </species>
- <species id="M_adocbl_e" name="Adenosylcobalamin" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C72H100CoN18O17P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C72H100CoN18O17P</p>
- <p>CHEBI: 18408</p>
- <p>KEGG: C00194</p>
- <p>PUBCHEM: 3494</p>
- </html>
- </notes>
- </species>
- <species id="M_leu__L_p" name="L-Leucine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H13NO2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H13NO2</p>
- <p>CHEBI: 15603</p>
- <p>KEGG: C00123</p>
- <p>PUBCHEM: 3423</p>
- </html>
- </notes>
- </species>
- <species id="M_2agpg181_p" name="2-Acyl-sn-glycero-3-phosphoglycerol-n-C181" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H46O9P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C24H46O9P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_adocbl_p" name="Adenosylcobalamin" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C72H100CoN18O17P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C72H100CoN18O17P</p>
- <p>CHEBI: 18408</p>
- <p>KEGG: C00194</p>
- <p>PUBCHEM: 3494</p>
- </html>
- </notes>
- </species>
- <species id="M_dgsn_c" name="Deoxyguanosine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C10H13N5O4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H13N5O4</p>
- <p>CHEBI: 17172</p>
- <p>KEGG: C00330</p>
- <p>PUBCHEM: 3624</p>
- </html>
- </notes>
- </species>
- <species id="M_ppbng_c" name="Porphobilinogen" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H13N2O4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H13N2O4</p>
- <p>CHEBI: 17381</p>
- <p>KEGG: C00931</p>
- <p>PUBCHEM: 4184</p>
- </html>
- </notes>
- </species>
- <species id="M_glntrna_c" name="L-Glutaminyl-tRNA-Gln" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C5H9N2O2R">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H9N2O2R</p>
- <p>CHEBI: 29166</p>
- <p>KEGG: C02282</p>
- <p>PUBCHEM: 5339</p>
- </html>
- </notes>
- </species>
- <species id="M_dgsn_e" name="Deoxyguanosine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C10H13N5O4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H13N5O4</p>
- <p>CHEBI: 17172</p>
- <p>KEGG: C00330</p>
- <p>PUBCHEM: 3624</p>
- </html>
- </notes>
- </species>
- <species id="M_ddca_c" name="Dodecanoate-n-C120" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C12H23O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C12H23O2</p>
- <p>CHEBI: 30805</p>
- <p>KEGG: C02679</p>
- <p>PUBCHEM: 5649</p>
- </html>
- </notes>
- </species>
- <species id="M_ddca_e" name="Dodecanoate-n-C120" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C12H23O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C12H23O2</p>
- <p>CHEBI: 30805</p>
- <p>KEGG: C02679</p>
- <p>PUBCHEM: 5649</p>
- </html>
- </notes>
- </species>
- <species id="M_sheme_c" name="Siroheme" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C42H36FeN4O16">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C42H36FeN4O16</p>
- <p>CHEBI: 28599</p>
- <p>KEGG: C00748</p>
- <p>PUBCHEM: 4010</p>
- </html>
- </notes>
- </species>
- <species id="M_dgsn_p" name="Deoxyguanosine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C10H13N5O4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H13N5O4</p>
- <p>CHEBI: 17172</p>
- <p>KEGG: C00330</p>
- <p>PUBCHEM: 3624</p>
- </html>
- </notes>
- </species>
- <species id="M_ddca_p" name="Dodecanoate-n-C120" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C12H23O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C12H23O2</p>
- <p>CHEBI: 30805</p>
- <p>KEGG: C02679</p>
- <p>PUBCHEM: 5649</p>
- </html>
- </notes>
- </species>
- <species id="M_dad__2_e" name="Deoxyadenosine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C10H13N5O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H13N5O3</p>
- <p>CHEBI: 17256</p>
- <p>KEGG: C00559</p>
- <p>PUBCHEM: 3839</p>
- </html>
- </notes>
- </species>
- <species id="M_histd_c" name="L-Histidinol" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H12N3O">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H12N3O</p>
- <p>CHEBI: 16255</p>
- <p>KEGG: C00860</p>
- <p>PUBCHEM: 4117</p>
- </html>
- </notes>
- </species>
- <species id="M_g3p_c" name="Glyceraldehyde-3-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H5O6P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H5O6P</p>
- <p>CHEBI: 17138</p>
- <p>KEGG: C00661</p>
- <p>PUBCHEM: 3930</p>
- </html>
- </notes>
- </species>
- <species id="M_skm_p" name="Shikimate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H9O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C7H9O5</p>
- <p>CHEBI: 16119</p>
- <p>KEGG: C00493</p>
- <p>PUBCHEM: 3776</p>
- </html>
- </notes>
- </species>
- <species id="M_2ddglcn_c" name="2-Dehydro-3-deoxy-D-gluconate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H9O6</p>
- <p>CHEBI: 17032</p>
- <p>KEGG: C00204</p>
- <p>PUBCHEM: 3504</p>
- </html>
- </notes>
- </species>
- <species id="M_2ddglcn_e" name="2-Dehydro-3-deoxy-D-gluconate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H9O6</p>
- <p>CHEBI: 17032</p>
- <p>KEGG: C00204</p>
- <p>PUBCHEM: 3504</p>
- </html>
- </notes>
- </species>
- <species id="M_hqn_c" name="Hydroquinone" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H6O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H6O2</p>
- <p>CHEBI: 17594</p>
- <p>KEGG: C00530</p>
- <p>PUBCHEM: 3812</p>
- </html>
- </notes>
- </species>
- <species id="M_1agpe180_p" name="1-Acyl-sn-glycero-3-phosphoethanolamine-n-C180" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C23H48NO7P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C23H48NO7P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C04438</p>
- <p>PUBCHEM: 7069</p>
- </html>
- </notes>
- </species>
- <species id="M_2ddglcn_p" name="2-Dehydro-3-deoxy-D-gluconate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H9O6</p>
- <p>CHEBI: 17032</p>
- <p>KEGG: C00204</p>
- <p>PUBCHEM: 3504</p>
- </html>
- </notes>
- </species>
- <species id="M_glyceryl_prolpp_c" name="glyceryl_prolpp_c" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: </p>
- <p>CHEBI: NA</p>
- <p>KEGG: NA</p>
- <p>PUBCHEM: NA</p>
- </html>
- </notes>
- </species>
- <species id="M_thymd_e" name="Thymidine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C10H14N2O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H14N2O5</p>
- <p>CHEBI: 17748</p>
- <p>KEGG: C00214</p>
- <p>PUBCHEM: 3514</p>
- </html>
- </notes>
- </species>
- <species id="M_thymd_c" name="Thymidine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C10H14N2O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H14N2O5</p>
- <p>CHEBI: 17748</p>
- <p>KEGG: C00214</p>
- <p>PUBCHEM: 3514</p>
- </html>
- </notes>
- </species>
- <species id="M_grxox_c" name="glutaredoxin-oxidized" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="X">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: X</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_thymd_p" name="Thymidine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C10H14N2O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H14N2O5</p>
- <p>CHEBI: 17748</p>
- <p>KEGG: C00214</p>
- <p>PUBCHEM: 3514</p>
- </html>
- </notes>
- </species>
- <species id="M_4hoxpac_p" name="4-Hydroxyphenylacetate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H7O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C8H7O3</p>
- <p>CHEBI: 18101</p>
- <p>KEGG: C00642</p>
- <p>PUBCHEM: 3915</p>
- </html>
- </notes>
- </species>
- <species id="M_glutrna_c" name="L-Glutamyl-tRNA-Glu" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H7NO3R">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H7NO3R</p>
- <p>CHEBI: 29157</p>
- <p>KEGG: C02987</p>
- <p>PUBCHEM: 5896</p>
- </html>
- </notes>
- </species>
- <species id="M_udcdpgalrmnman_c" name="Undecaprenyl-diphosphate-galactose-rhamnose-mannose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C73H120O21P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C73H120O21P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_4hoxpac_c" name="4-Hydroxyphenylacetate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H7O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C8H7O3</p>
- <p>CHEBI: 18101</p>
- <p>KEGG: C00642</p>
- <p>PUBCHEM: 3915</p>
- </html>
- </notes>
- </species>
- <species id="M_udp_c" name="UDP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C9H11N2O12P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H11N2O12P2</p>
- <p>CHEBI: 17659</p>
- <p>KEGG: C00015</p>
- <p>PUBCHEM: 3317</p>
- </html>
- </notes>
- </species>
- <species id="M_4hoxpac_e" name="4-Hydroxyphenylacetate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H7O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C8H7O3</p>
- <p>CHEBI: 18101</p>
- <p>KEGG: C00642</p>
- <p>PUBCHEM: 3915</p>
- </html>
- </notes>
- </species>
- <species id="M_butACP_c" name="Butyryl-ACP-n-C40ACP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H27N2O8PRS">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C15H27N2O8PRS</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C05745</p>
- <p>PUBCHEM: 8040</p>
- </html>
- </notes>
- </species>
- <species id="M_salchs2fe_p" name="salchs2fe_p" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: </p>
- <p>CHEBI: NA</p>
- <p>KEGG: NA</p>
- <p>PUBCHEM: NA</p>
- </html>
- </notes>
- </species>
- <species id="M_fgam_c" name="N2-Formyl-N1-5-phospho-D-ribosyl-glycinamide" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C8H13N2O9P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C8H13N2O9P</p>
- <p>CHEBI: 18272</p>
- <p>KEGG: C04376</p>
- <p>PUBCHEM: 7017</p>
- </html>
- </notes>
- </species>
- <species id="M_salchs2fe_e" name="salchs2fe_e" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: </p>
- <p>CHEBI: NA</p>
- <p>KEGG: NA</p>
- <p>PUBCHEM: NA</p>
- </html>
- </notes>
- </species>
- <species id="M_salchs2fe_c" name="salchs2fe_c" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: </p>
- <p>CHEBI: NA</p>
- <p>KEGG: NA</p>
- <p>PUBCHEM: NA</p>
- </html>
- </notes>
- </species>
- <species id="M_malthx_e" name="Maltohexaose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C36H62O31">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C36H62O31</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C01936</p>
- <p>PUBCHEM: 5041</p>
- </html>
- </notes>
- </species>
- <species id="M_malthx_c" name="Maltohexaose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C36H62O31">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C36H62O31</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C01936</p>
- <p>PUBCHEM: 5041</p>
- </html>
- </notes>
- </species>
- <species id="M_pa160_p" name="1-2-dihexadecanoyl-sn-glycerol-3-phosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C35H67O8P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C35H67O8P1</p>
- <p>CHEBI: 16337</p>
- <p>KEGG: C00416</p>
- <p>PUBCHEM: 3706</p>
- </html>
- </notes>
- </species>
- <species id="M_quln_c" name="Quinolinate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C7H3NO4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C7H3NO4</p>
- <p>CHEBI: 16675</p>
- <p>KEGG: C03722</p>
- <p>PUBCHEM: 6487</p>
- </html>
- </notes>
- </species>
- <species id="M_malthx_p" name="Maltohexaose" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C36H62O31">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C36H62O31</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C01936</p>
- <p>PUBCHEM: 5041</p>
- </html>
- </notes>
- </species>
- <species id="M_pa160_c" name="1-2-dihexadecanoyl-sn-glycerol-3-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C35H67O8P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C35H67O8P1</p>
- <p>CHEBI: 16337</p>
- <p>KEGG: C00416</p>
- <p>PUBCHEM: 3706</p>
- </html>
- </notes>
- </species>
- <species id="M_1agpg180_p" name="1-Acyl-sn-glycero-3-phosphoglycerol-n-C180" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H48O9P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C24H48O9P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_udcdp10Oag_p" name="Undecaprenyl-diphosphate-O-antigene-10x" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C295H490O177P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C295H490O177P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_metsox__S__L_p" name="L-Methionine-Sulfoxide" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H11NO3S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H11NO3S</p>
- <p>CHEBI: 17016</p>
- <p>KEGG: C02989</p>
- <p>PUBCHEM: 5898</p>
- </html>
- </notes>
- </species>
- <species id="M_feoxam__un_p" name="ferroxamine-minus-Fe-3" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C25H46N6O8">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C25H46N6O8</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_orot5p_c" name="Orotidine-5-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H10N2O11P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H10N2O11P</p>
- <p>CHEBI: 15842</p>
- <p>KEGG: C01103</p>
- <p>PUBCHEM: 4337</p>
- </html>
- </notes>
- </species>
- <species id="M_murein4px4p_p" name="two-disacharide-linked-murein-units-tetrapeptide-corsslinked-tetrapeptide-A2pm-D-ala--middle-of-chain" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C74H112N14O39">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C74H112N14O39</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_ssaltpp_c" name="Succinate-semialdehyde-thiamin-diphosphate-anion" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C16H21N4O10P2S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C16H21N4O10P2S</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C05816</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_metsox__S__L_c" name="L-Methionine-Sulfoxide" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H11NO3S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H11NO3S</p>
- <p>CHEBI: 17016</p>
- <p>KEGG: C02989</p>
- <p>PUBCHEM: 5898</p>
- </html>
- </notes>
- </species>
- <species id="M_feoxam__un_e" name="ferroxamine-minus-Fe-3" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C25H46N6O8">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C25H46N6O8</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_cpgn_p" name="coprogen" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C35H52N6O13Fe">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C35H52N6O13Fe</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_metsox__S__L_e" name="L-Methionine-Sulfoxide" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H11NO3S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H11NO3S</p>
- <p>CHEBI: 17016</p>
- <p>KEGG: C02989</p>
- <p>PUBCHEM: 5898</p>
- </html>
- </notes>
- </species>
- <species id="M_but2eACP_c" name="But-2-enoyl-acyl-carrier-protein" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H25N2O8PRS">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C15H25N2O8PRS</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C04246</p>
- <p>PUBCHEM: 6911</p>
- </html>
- </notes>
- </species>
- <species id="M_tdcoa_c" name="Tetradecanoyl-CoA-n-C140CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H58N7O17P3S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C35H58N7O17P3S</p>
- <p>CHEBI: 15532</p>
- <p>KEGG: C02593</p>
- <p>PUBCHEM: 5585</p>
- </html>
- </notes>
- </species>
- <species id="M_acgam_e" name="N-Acetyl-D-glucosamine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C8H15NO6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C8H15NO6</p>
- <p>CHEBI: 17411</p>
- <p>KEGG: C00140</p>
- <p>PUBCHEM: 3440</p>
- </html>
- </notes>
- </species>
- <species id="M_q8h2_c" name="Ubiquinol-8" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C49H76O4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C49H76O4</p>
- <p>CHEBI: 17976</p>
- <p>KEGG: C00390</p>
- <p>PUBCHEM: 3680</p>
- </html>
- </notes>
- </species>
- <species id="M_1agpe141_p" name="1-Acyl-sn-glycero-3-phosphoethanolamine-n-C141" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C19H38NO7P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C19H38NO7P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C04438</p>
- <p>PUBCHEM: 7069</p>
- </html>
- </notes>
- </species>
- <species id="M_bglycogen_c" name="branching-glycogen" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H10O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H10O5</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_dcdp_c" name="dCDP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C9H12N3O10P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H12N3O10P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C00705</p>
- <p>PUBCHEM: 3972</p>
- </html>
- </notes>
- </species>
- <species id="M_trnaphe_c" name="tRNA-Phe" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="R">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: R</p>
- <p>CHEBI: 29184</p>
- <p>KEGG: C01648</p>
- <p>PUBCHEM: 4797</p>
- </html>
- </notes>
- </species>
- <species id="M_23dhdp_c" name="2-3-Dihydrodipicolinate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C7H5NO4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C7H5NO4</p>
- <p>CHEBI: 18042</p>
- <p>KEGG: C03340</p>
- <p>PUBCHEM: 6183</p>
- </html>
- </notes>
- </species>
- <species id="M_cys__L_e" name="L-Cysteine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H7NO2S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H7NO2S</p>
- <p>CHEBI: 17561</p>
- <p>KEGG: C00097</p>
- <p>PUBCHEM: 3397</p>
- </html>
- </notes>
- </species>
- <species id="M_2mcit_c" name="2-Methylcitrate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C7H7O7">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C7H7O7</p>
- <p>CHEBI: 10860 30836</p>
- <p>KEGG: C02225</p>
- <p>PUBCHEM: 5290</p>
- </html>
- </notes>
- </species>
- <species id="M_gbbtn_c" name="gamma-butyrobetaine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C7H15NO2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C7H15NO2</p>
- <p>CHEBI: 1941</p>
- <p>KEGG: C01181</p>
- <p>PUBCHEM: 4408</p>
- </html>
- </notes>
- </species>
- <species id="M_cys__L_p" name="L-Cysteine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H7NO2S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H7NO2S</p>
- <p>CHEBI: 17561</p>
- <p>KEGG: C00097</p>
- <p>PUBCHEM: 3397</p>
- </html>
- </notes>
- </species>
- <species id="M_dad__2_p" name="Deoxyadenosine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C10H13N5O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H13N5O3</p>
- <p>CHEBI: 17256</p>
- <p>KEGG: C00559</p>
- <p>PUBCHEM: 3839</p>
- </html>
- </notes>
- </species>
- <species id="M_ppcoa_c" name="Propanoyl-CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C24H36N7O17P3S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C24H36N7O17P3S</p>
- <p>CHEBI: 15539</p>
- <p>KEGG: C00100</p>
- <p>PUBCHEM: 3400</p>
- </html>
- </notes>
- </species>
- <species id="M_fe3hox__un_p" name="Fe-III-hydoxamate-unloaded" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C9H18O6N3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H18O6N3</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_6pgl_c" name="6-phospho-D-glucono-1-5-lactone" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H9O9P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H9O9P</p>
- <p>CHEBI: 16938</p>
- <p>KEGG: C01236</p>
- <p>PUBCHEM: 4457</p>
- </html>
- </notes>
- </species>
- <species id="M_gly_p" name="Glycine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C2H5NO2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C2H5NO2</p>
- <p>CHEBI: 15428</p>
- <p>KEGG: C00037</p>
- <p>PUBCHEM: 3339</p>
- </html>
- </notes>
- </species>
- <species id="M_fe3hox__un_c" name="Fe-III-hydoxamate-unloaded" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C9H18O6N3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H18O6N3</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_fe3hox__un_e" name="Fe-III-hydoxamate-unloaded" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C9H18O6N3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H18O6N3</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_gly_e" name="Glycine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C2H5NO2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C2H5NO2</p>
- <p>CHEBI: 15428</p>
- <p>KEGG: C00037</p>
- <p>PUBCHEM: 3339</p>
- </html>
- </notes>
- </species>
- <species id="M_1agpg140_p" name="1-Acyl-sn-glycero-3-phosphoglycerol-n-C140" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H40O9P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C20H40O9P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_gly_c" name="Glycine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C2H5NO2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C2H5NO2</p>
- <p>CHEBI: 15428</p>
- <p>KEGG: C00037</p>
- <p>PUBCHEM: 3339</p>
- </html>
- </notes>
- </species>
- <species id="M_lald__D_c" name="D-Lactaldehyde" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H6O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H6O2</p>
- <p>CHEBI: 17167</p>
- <p>KEGG: C00937</p>
- <p>PUBCHEM: 4189</p>
- </html>
- </notes>
- </species>
- <species id="M_galctn__D_p" name="D-Galactonate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O7">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H11O7</p>
- <p>CHEBI: 12931 16534</p>
- <p>KEGG: C00880</p>
- <p>PUBCHEM: 4136</p>
- </html>
- </notes>
- </species>
- <species id="M_2mcacn_c" name="cis-2-Methylaconitate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C7H5O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C7H5O6</p>
- <p>CHEBI: 16717</p>
- <p>KEGG: C04225</p>
- <p>PUBCHEM: 6896</p>
- </html>
- </notes>
- </species>
- <species id="M_dhap_c" name="Dihydroxyacetone-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H5O6P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H5O6P</p>
- <p>CHEBI: 16108</p>
- <p>KEGG: C00111</p>
- <p>PUBCHEM: 3411</p>
- </html>
- </notes>
- </species>
- <species id="M_galctn__D_c" name="D-Galactonate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O7">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H11O7</p>
- <p>CHEBI: 12931 16534</p>
- <p>KEGG: C00880</p>
- <p>PUBCHEM: 4136</p>
- </html>
- </notes>
- </species>
- <species id="M_galctn__D_e" name="D-Galactonate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O7">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H11O7</p>
- <p>CHEBI: 12931 16534</p>
- <p>KEGG: C00880</p>
- <p>PUBCHEM: 4136</p>
- </html>
- </notes>
- </species>
- <species id="M_3hcddec5eACP_c" name="R-3-hydroxy-cis-dodec-5-enoyl-acyl-carrier-protein" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C23H41N2O9PRS">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C23H41N2O9PRS</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_lald__L_c" name="L-Lactaldehyde" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H6O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H6O2</p>
- <p>CHEBI: 18041</p>
- <p>KEGG: C00424</p>
- <p>PUBCHEM: 3714</p>
- </html>
- </notes>
- </species>
- <species id="M_6pgc_c" name="6-Phospho-D-gluconate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H10O10P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H10O10P</p>
- <p>CHEBI: 48928</p>
- <p>KEGG: C00345</p>
- <p>PUBCHEM: 3638</p>
- </html>
- </notes>
- </species>
- <species id="M_sucsal_c" name="Succinic-semialdehyde" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H5O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H5O3</p>
- <p>CHEBI: 16265</p>
- <p>KEGG: C00232</p>
- <p>PUBCHEM: 3531</p>
- </html>
- </notes>
- </species>
- <species id="M_murein5px4p_p" name="two-disacharide-linked-murein-units-pentapeptide-crosslinked-tetrapeptide-A2pm-D-ala--middle-of-chain" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C77H117N15O40">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C77H117N15O40</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_4hbz_c" name="4-Hydroxybenzoate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H5O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C7H5O3</p>
- <p>CHEBI: 30763</p>
- <p>KEGG: C00156</p>
- <p>PUBCHEM: 3456</p>
- </html>
- </notes>
- </species>
- <species id="M_malthp_c" name="Maltoheptaose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C42H72O36">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C42H72O36</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 3037125??8462</p>
- </html>
- </notes>
- </species>
- <species id="M_cdec3eACP_c" name="cis-dec-3-enoyl-acyl-carrier-protein-n-C101" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H37N2O8PRS">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C21H37N2O8PRS</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_cl_p" name="Chloride" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="Cl">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: Cl</p>
- <p>CHEBI: 17996</p>
- <p>KEGG: C00115</p>
- <p>PUBCHEM: 3415</p>
- </html>
- </notes>
- </species>
- <species id="M_2dhp_c" name="2-Dehydropantoate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H9O4</p>
- <p>CHEBI: 11561 17094</p>
- <p>KEGG: C00966</p>
- <p>PUBCHEM: 4217</p>
- </html>
- </notes>
- </species>
- <species id="M_dgtp_c" name="dGTP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H12N5O13P3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H12N5O13P3</p>
- <p>CHEBI: 16497</p>
- <p>KEGG: C00286</p>
- <p>PUBCHEM: 3581</p>
- </html>
- </notes>
- </species>
- <species id="M_udcdpgalrmnmanabe_p" name="Undecaprenyl-diphosphate-galactose-rhamnose-mannose-abequose" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C79H130O24P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C79H130O24P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_appp_c" name="D-1-Aminopropan-2-ol-O-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H9NO4P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H9NO4P</p>
- <p>CHEBI: 28390</p>
- <p>KEGG: C04122</p>
- <p>PUBCHEM: 6809</p>
- </html>
- </notes>
- </species>
- <species id="M_colipa20Oag_e" name="O-antigen-x20-core-oligosaccharide-lipid-A" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-11" fbc:chemicalFormula="C656H1103N2O440P4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C656H1103N2O440P4</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_ps181_c" name="phosphatidylserine-dioctadec-11-enoyl-n-C181" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C42H77N1O10P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C42H77N1O10P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C02737</p>
- <p>PUBCHEM: 5698</p>
- </html>
- </notes>
- </species>
- <species id="M_colipa20Oag_p" name="O-antigen-x20-core-oligosaccharide-lipid-A" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-11" fbc:chemicalFormula="C656H1103N2O440P4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C656H1103N2O440P4</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_cl_e" name="Chloride" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="Cl">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: Cl</p>
- <p>CHEBI: 17996</p>
- <p>KEGG: C00115</p>
- <p>PUBCHEM: 3415</p>
- </html>
- </notes>
- </species>
- <species id="M_asp__L_c" name="L-Aspartate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H6NO4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H6NO4</p>
- <p>CHEBI: 17053</p>
- <p>KEGG: C00049</p>
- <p>PUBCHEM: 3351</p>
- </html>
- </notes>
- </species>
- <species id="M_asp__L_e" name="L-Aspartate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H6NO4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H6NO4</p>
- <p>CHEBI: 17053</p>
- <p>KEGG: C00049</p>
- <p>PUBCHEM: 3351</p>
- </html>
- </notes>
- </species>
- <species id="M_tagdp__D_c" name="D-Tagatose-1-6-biphosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C6H10O12P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H10O12P2</p>
- <p>CHEBI: 4250</p>
- <p>KEGG: C03785</p>
- <p>PUBCHEM: 6535</p>
- </html>
- </notes>
- </species>
- <species id="M_1agpg181_p" name="1-Acyl-sn-glycero-3-phosphoglycerol-n-C181" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H46O9P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C24H46O9P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_asp__L_p" name="L-Aspartate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H6NO4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H6NO4</p>
- <p>CHEBI: 17053</p>
- <p>KEGG: C00049</p>
- <p>PUBCHEM: 3351</p>
- </html>
- </notes>
- </species>
- <species id="M_pydx5p_c" name="Pyridoxal-5-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C8H8NO6P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C8H8NO6P</p>
- <p>CHEBI: 18405</p>
- <p>KEGG: C00018</p>
- <p>PUBCHEM: 3320</p>
- </html>
- </notes>
- </species>
- <species id="M_sl2a6o_c" name="N-Succinyl-2-L-amino-6-oxoheptanedioate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C11H12NO8">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C11H12NO8</p>
- <p>CHEBI: 35266</p>
- <p>KEGG: C04462</p>
- <p>PUBCHEM: 7087</p>
- </html>
- </notes>
- </species>
- <species id="M_4ppcys_c" name="N--R-4-Phosphopantothenoyl-L-cysteine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C12H20N2O9PS">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C12H20N2O9PS</p>
- <p>CHEBI: 15769</p>
- <p>KEGG: C04352</p>
- <p>PUBCHEM: 7001</p>
- </html>
- </notes>
- </species>
- <species id="M_6hmhptpp_c" name="6-hydroxymethyl-dihydropterin-pyrophosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C7H8N5O8P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C7H8N5O8P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_hemeO_c" name="Heme-O" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C49H56FeN4O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C49H56FeN4O5</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C15672</p>
- <p>PUBCHEM: 47204998</p>
- </html>
- </notes>
- </species>
- <species id="M_3hdecACP_c" name="R-3-Hydroxydecanoyl-acyl-carrier-protein" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H39N2O9PRS">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C21H39N2O9PRS</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C04619</p>
- <p>PUBCHEM: 7209</p>
- </html>
- </notes>
- </species>
- <species id="M_1odecg3p_p" name="1-octadecanoyl-sn-glycerol-3-phosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H41O7P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C21H41O7P1</p>
- <p>CHEBI: 16975</p>
- <p>KEGG: C00681</p>
- <p>PUBCHEM: 3950</p>
- </html>
- </notes>
- </species>
- <species id="M_sucr_p" name="Sucrose" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C12H22O11">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C12H22O11</p>
- <p>CHEBI: 17992</p>
- <p>KEGG: C00089</p>
- <p>PUBCHEM: 3389</p>
- </html>
- </notes>
- </species>
- <species id="M_datp_c" name="dATP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H12N5O12P3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H12N5O12P3</p>
- <p>CHEBI: 16284</p>
- <p>KEGG: C00131</p>
- <p>PUBCHEM: 3431</p>
- </html>
- </notes>
- </species>
- <species id="M_1odecg3p_c" name="1-octadecanoyl-sn-glycerol-3-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H41O7P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C21H41O7P1</p>
- <p>CHEBI: 16975</p>
- <p>KEGG: C00681</p>
- <p>PUBCHEM: 3950</p>
- </html>
- </notes>
- </species>
- <species id="M_sucr_e" name="Sucrose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C12H22O11">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C12H22O11</p>
- <p>CHEBI: 17992</p>
- <p>KEGG: C00089</p>
- <p>PUBCHEM: 3389</p>
- </html>
- </notes>
- </species>
- <species id="M_3sala_c" name="3-Sulfino-L-alanine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H5NO4S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H5NO4S</p>
- <p>CHEBI: 16345</p>
- <p>KEGG: C00606</p>
- <p>PUBCHEM: 3881</p>
- </html>
- </notes>
- </species>
- <species id="M_pa120_p" name="1-2-didodecanoyl-sn-glycerol-3-phosphate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C27H51O8P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C27H51O8P1</p>
- <p>CHEBI: 16337</p>
- <p>KEGG: C00416</p>
- <p>PUBCHEM: 3706</p>
- </html>
- </notes>
- </species>
- <species id="M_3dhgulnp_c" name="3-keto-L-gulonate-6-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H8O10P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H8O10P</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C14899</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_pa120_c" name="1-2-didodecanoyl-sn-glycerol-3-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C27H51O8P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C27H51O8P1</p>
- <p>CHEBI: 16337</p>
- <p>KEGG: C00416</p>
- <p>PUBCHEM: 3706</p>
- </html>
- </notes>
- </species>
- <species id="M_3dhguln_c" name="3-Dehydro-L-gulonate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O7">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H9O7</p>
- <p>CHEBI: 16142</p>
- <p>KEGG: C00618</p>
- <p>PUBCHEM: 3892</p>
- </html>
- </notes>
- </species>
- <species id="M_3hhexACP_c" name="R-3-Hydroxyhexanoyl-acyl-carrier-protein" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H31N2O9PRS">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C17H31N2O9PRS</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C05747</p>
- <p>PUBCHEM: 8042</p>
- </html>
- </notes>
- </species>
- <species id="M_3hcvac11eACP_c" name="R-3-hydroxy-cis-vacc-11-enoyl-acyl-carrier-protein" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C29H53N2O9PRS">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C29H53N2O9PRS</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_2kmb_c" name="2-keto-4-methylthiobutyrate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H7O3S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H7O3S</p>
- <p>CHEBI: 17275</p>
- <p>KEGG: C01180</p>
- <p>PUBCHEM: 5611</p>
- </html>
- </notes>
- </species>
- <species id="M_dtdpglu_c" name="dTDPglucose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C16H24N2O16P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C16H24N2O16P2</p>
- <p>CHEBI: 15700</p>
- <p>KEGG: C00842</p>
- <p>PUBCHEM: 4099</p>
- </html>
- </notes>
- </species>
- <species id="M_2agpg141_c" name="2-Acyl-sn-glycero-3-phosphoglycerol-n-C141" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H38O9P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C20H38O9P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_2agpg141_p" name="2-Acyl-sn-glycero-3-phosphoglycerol-n-C141" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H38O9P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C20H38O9P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_his__L_e" name="L-Histidine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C6H9N3O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H9N3O2</p>
- <p>CHEBI: 15971</p>
- <p>KEGG: C00135</p>
- <p>PUBCHEM: 3435</p>
- </html>
- </notes>
- </species>
- <species id="M_ddcaACP_c" name="Dodecanoyl-ACP-n-C120ACP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C23H43N2O8PRS">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C23H43N2O8PRS</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C05223</p>
- <p>PUBCHEM: 7620</p>
- </html>
- </notes>
- </species>
- <species id="M_clpn140_p" name="cardiolipin-tetratetradecanoyl-n-C140" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C65H124O17P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C65H124O17P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C05980</p>
- <p>PUBCHEM: 8259</p>
- </html>
- </notes>
- </species>
- <species id="M_gthox_c" name="Oxidized-glutathione" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H30N6O12S2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C20H30N6O12S2</p>
- <p>CHEBI: 17858</p>
- <p>KEGG: C00127</p>
- <p>PUBCHEM: 3427</p>
- </html>
- </notes>
- </species>
- <species id="M_pydam_c" name="Pyridoxamine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C8H13N2O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C8H13N2O2</p>
- <p>CHEBI: 16410</p>
- <p>KEGG: C00534</p>
- <p>PUBCHEM: 3816</p>
- </html>
- </notes>
- </species>
- <species id="M_imp_e" name="IMP" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H11N4O8P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H11N4O8P</p>
- <p>CHEBI: 17202</p>
- <p>KEGG: C00130</p>
- <p>PUBCHEM: 3430</p>
- </html>
- </notes>
- </species>
- <species id="M_anhm4p_c" name="1-6-anhydrous-N-Acetylmuramyl-tetrapeptide" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C29H44N6O15">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C29H44N6O15</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_ppoh_c" name="1-Propanol" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C3H8O1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H8O1</p>
- <p>CHEBI: 28831</p>
- <p>KEGG: C05979</p>
- <p>PUBCHEM: 8258</p>
- </html>
- </notes>
- </species>
- <species id="M_fe3dhbzs_e" name="ferric-2-3-dihydroxybenzoylserine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C10H10NO6Fe">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H10NO6Fe</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_fe3dhbzs_c" name="ferric-2-3-dihydroxybenzoylserine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C10H10NO6Fe">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H10NO6Fe</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_2agpe160_c" name="2-Acyl-sn-glycero-3-phosphoethanolamine-n-C160" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C21H44NO7P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C21H44NO7P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C05973</p>
- <p>PUBCHEM: 8253</p>
- </html>
- </notes>
- </species>
- <species id="M_prbatp_c" name="1-5-Phosphoribosyl-ATP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C15H19N5O20P4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C15H19N5O20P4</p>
- <p>CHEBI: 18263</p>
- <p>KEGG: C02739</p>
- <p>PUBCHEM: 5699</p>
- </html>
- </notes>
- </species>
- <species id="M_pg160_p" name="Phosphatidylglycerol-dihexadecanoyl-n-C160" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C38H74O10P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C38H74O10P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C00344</p>
- <p>PUBCHEM: 3637</p>
- </html>
- </notes>
- </species>
- <species id="M_hx2coa_c" name="trans-Hex-2-enoyl-CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C27H40N7O17P3S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C27H40N7O17P3S</p>
- <p>CHEBI: 28706</p>
- <p>KEGG: C05271</p>
- <p>PUBCHEM: 7658</p>
- </html>
- </notes>
- </species>
- <species id="M_2agpe160_p" name="2-Acyl-sn-glycero-3-phosphoethanolamine-n-C160" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C21H44NO7P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C21H44NO7P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C05973</p>
- <p>PUBCHEM: 8253</p>
- </html>
- </notes>
- </species>
- <species id="M_fe3dhbzs_p" name="ferric-2-3-dihydroxybenzoylserine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C10H10NO6Fe">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H10NO6Fe</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_ametam_c" name="S-Adenosylmethioninamine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C14H24N6O3S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C14H24N6O3S</p>
- <p>CHEBI: 15625</p>
- <p>KEGG: C01137</p>
- <p>PUBCHEM: 4368</p>
- </html>
- </notes>
- </species>
- <species id="M_pg160_c" name="Phosphatidylglycerol-dihexadecanoyl-n-C160" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C38H74O10P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C38H74O10P1</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C00344</p>
- <p>PUBCHEM: 3637</p>
- </html>
- </notes>
- </species>
- <species id="M_glyclt_c" name="Glycolate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H3O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C2H3O3</p>
- <p>CHEBI: 17497</p>
- <p>KEGG: C00160</p>
- <p>PUBCHEM: 3460</p>
- </html>
- </notes>
- </species>
- <species id="M_glyclt_e" name="Glycolate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H3O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C2H3O3</p>
- <p>CHEBI: 17497</p>
- <p>KEGG: C00160</p>
- <p>PUBCHEM: 3460</p>
- </html>
- </notes>
- </species>
- <species id="M_AEP_e" name="2-Aminoethylphosphonate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H7N1O3P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C2H7N1O3P1</p>
- <p>CHEBI: 15573</p>
- <p>KEGG: C03557</p>
- <p>PUBCHEM: 6353</p>
- </html>
- </notes>
- </species>
- <species id="M_AEP_c" name="2-Aminoethylphosphonate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H7N1O3P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C2H7N1O3P1</p>
- <p>CHEBI: 15573</p>
- <p>KEGG: C03557</p>
- <p>PUBCHEM: 6353</p>
- </html>
- </notes>
- </species>
- <species id="M_glyclt_p" name="Glycolate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H3O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C2H3O3</p>
- <p>CHEBI: 17497</p>
- <p>KEGG: C00160</p>
- <p>PUBCHEM: 3460</p>
- </html>
- </notes>
- </species>
- <species id="M_AEP_p" name="2-Aminoethylphosphonate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H7N1O3P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C2H7N1O3P1</p>
- <p>CHEBI: 15573</p>
- <p>KEGG: C03557</p>
- <p>PUBCHEM: 6353</p>
- </html>
- </notes>
- </species>
- <species id="M_akg_c" name="2-Oxoglutarate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H4O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H4O5</p>
- <p>CHEBI: 30915</p>
- <p>KEGG: C00026</p>
- <p>PUBCHEM: 3328</p>
- </html>
- </notes>
- </species>
- <species id="M_anhgm4p_c" name="N-Acetyl-D-glucosamine-anhydrous-N-Acetylmuramyl-tetrapeptide" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C37H57N7O20">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C37H57N7O20</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_akg_e" name="2-Oxoglutarate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H4O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H4O5</p>
- <p>CHEBI: 30915</p>
- <p>KEGG: C00026</p>
- <p>PUBCHEM: 3328</p>
- </html>
- </notes>
- </species>
- <species id="M_2omhmbl_c" name="2-Octaprenyl-3-methyl-5-hydroxy-6-methoxy-1-4-benzoquinol" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C48H74O4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C48H74O4</p>
- <p>CHEBI: 27688</p>
- <p>KEGG: C05815</p>
- <p>PUBCHEM: 8110</p>
- </html>
- </notes>
- </species>
- <species id="M_dad__2_c" name="Deoxyadenosine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C10H13N5O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H13N5O3</p>
- <p>CHEBI: 17256</p>
- <p>KEGG: C00559</p>
- <p>PUBCHEM: 3839</p>
- </html>
- </notes>
- </species>
- <species id="M_akg_p" name="2-Oxoglutarate" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H4O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H4O5</p>
- <p>CHEBI: 30915</p>
- <p>KEGG: C00026</p>
- <p>PUBCHEM: 3328</p>
- </html>
- </notes>
- </species>
- <species id="M_anhgm4p_p" name="N-Acetyl-D-glucosamine-anhydrous-N-Acetylmuramyl-tetrapeptide" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C37H57N7O20">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C37H57N7O20</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_toct2eACP_c" name="trans-Oct-2-enoyl-acyl-carrier-protein" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H33N2O8PRS">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C19H33N2O8PRS</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C05751</p>
- <p>PUBCHEM: 8046</p>
- </html>
- </notes>
- </species>
- <species id="M_14glucan_p" name="1-4-alpha-D-glucan" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C36H62O31">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C36H62O31</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C00912</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_3c2hmp_c" name="3-Carboxy-2-hydroxy-4-methylpentanoate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C7H10O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C7H10O5</p>
- <p>CHEBI: 35121</p>
- <p>KEGG: C04411</p>
- <p>PUBCHEM: 7045</p>
- </html>
- </notes>
- </species>
- <species id="M_enlipa_e" name="phosphoethanolamine-KDO-2-lipid-A" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C112H202N3O42P3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C112H202N3O42P3</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_trnatyr_c" name="tRNA-Tyr" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="R">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: R</p>
- <p>CHEBI: 29182</p>
- <p>KEGG: C00787</p>
- <p>PUBCHEM: 4045</p>
- </html>
- </notes>
- </species>
- <species id="M_14glucan_c" name="1-4-alpha-D-glucan" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C36H62O31">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C36H62O31</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C00912</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_14glucan_e" name="1-4-alpha-D-glucan" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C36H62O31">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C36H62O31</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C00912</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_enlipa_p" name="phosphoethanolamine-KDO-2-lipid-A" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C112H202N3O42P3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C112H202N3O42P3</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_hacolipa_e" name="hepta-acylated-core-oligosaccharide-lipid-A-E-coli" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-11" fbc:chemicalFormula="C192H333N2O101P4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C192H333N2O101P4</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_udcdp8Oag_p" name="Undecaprenyl-diphosphate-O-antigene-8x" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C247H410O143P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C247H410O143P2</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_sucbz_c" name="o-Succinylbenzoate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C11H8O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C11H8O5</p>
- <p>CHEBI: 18325</p>
- <p>KEGG: C02730</p>
- <p>PUBCHEM: 5692</p>
- </html>
- </notes>
- </species>
- <species id="M_apg120_c" name="acyl-phosphatidylglycerol-n-C120" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C42H80O11P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C42H80O11P</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_acgam6p_c" name="N-Acetyl-D-glucosamine-6-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C8H14NO9P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C8H14NO9P</p>
- <p>CHEBI: 15784</p>
- <p>KEGG: C00357</p>
- <p>PUBCHEM: 3650</p>
- </html>
- </notes>
- </species>
- <species id="M_met__D_p" name="D-Methionine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H10NO2S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H10NO2S</p>
- <p>CHEBI: 16867</p>
- <p>KEGG: C00855</p>
- <p>PUBCHEM: 4112</p>
- </html>
- </notes>
- </species>
- <species id="M_met__D_e" name="D-Methionine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H10NO2S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H10NO2S</p>
- <p>CHEBI: 16867</p>
- <p>KEGG: C00855</p>
- <p>PUBCHEM: 4112</p>
- </html>
- </notes>
- </species>
- <species id="M_met__D_c" name="D-Methionine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H10NO2S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H10NO2S</p>
- <p>CHEBI: 16867</p>
- <p>KEGG: C00855</p>
- <p>PUBCHEM: 4112</p>
- </html>
- </notes>
- </species>
- <species id="M_no3_e" name="Nitrate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="NO3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: NO3</p>
- <p>CHEBI: 48107</p>
- <p>KEGG: C00244</p>
- <p>PUBCHEM: 3543</p>
- </html>
- </notes>
- </species>
- <species id="M_iletrna_c" name="L-Isoleucyl-tRNA-Ile" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H12NOR">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H12NOR</p>
- <p>CHEBI: 29160</p>
- <p>KEGG: C03127</p>
- <p>PUBCHEM: 6020</p>
- </html>
- </notes>
- </species>
- <species id="M_3cmp_p" name="3-cmp" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H12N3O8P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H12N3O8P</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C05822</p>
- <p>PUBCHEM: 8117</p>
- </html>
- </notes>
- </species>
- <species id="M_5c2o3ed_c" name="5-Carboxy-2-oxohept-3-enedioate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C8H5O7">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C8H5O7</p>
- <p>CHEBI: 15924</p>
- <p>KEGG: C04052</p>
- <p>PUBCHEM: 6753</p>
- </html>
- </notes>
- </species>
- <species id="M_trnaser_c" name="tRNA-Ser" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="R">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: R</p>
- <p>CHEBI: 29179</p>
- <p>KEGG: C01650</p>
- <p>PUBCHEM: 4799</p>
- </html>
- </notes>
- </species>
- <species id="M_3cmp_e" name="3-cmp" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H12N3O8P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H12N3O8P</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C05822</p>
- <p>PUBCHEM: 8117</p>
- </html>
- </notes>
- </species>
- <species id="M_n8aspmd_c" name="N8-Acetylspermidine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C9H23N3O">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H23N3O</p>
- <p>CHEBI: 27911</p>
- <p>KEGG: C01029</p>
- <p>PUBCHEM: 4273</p>
- </html>
- </notes>
- </species>
- <species id="M_dsbgox_p" name="periplasmic-disulfide-isomerasethiol-disulphide-oxidase-oxidized" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="X">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: X</p>
- <p>CHEBI: 0</p>
- <p>KEGG: 0</p>
- <p>PUBCHEM: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_udpgalfur_c" name="UDP-D-galacto-1-4-furanose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C15H22N2O17P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C15H22N2O17P2</p>
- <p>CHEBI: 18251</p>
- <p>KEGG: C03733</p>
- <p>PUBCHEM: 6496</p>
- </html>
- </notes>
- </species>
- <species id="M_sucgsa_c" name="N2-Succinyl-L-glutamate-5-semialdehyde" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H11NO6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H11NO6</p>
- <p>CHEBI: 27657</p>
- <p>KEGG: C05932</p>
- <p>PUBCHEM: 8220</p>
- </html>
- </notes>
- </species>
- <species id="M_acorn_c" name="N2-Acetyl-L-ornithine" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C7H14N2O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C7H14N2O3</p>
- <p>CHEBI: 16543</p>
- <p>KEGG: C00437</p>
- <p>PUBCHEM: 3726</p>
- </html>
- </notes>
- </species>
- <species id="M_codscl6b_c" name="Cobalt-precorrin-6b" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-7" fbc:chemicalFormula="C44H47CoN4O16">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C44H47CoN4O16</p>
- <p>CHEBI: 0</p>
- <p>KEGG: C11543</p>
- <p>PUBCHEM: 13710</p>
- </html>
- </notes>
- </species>
- <species id="M_2dmmq8_c" name="2-Demethylmenaquinone-8" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C50H70O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C50H70O2</p>
- <p>CHEBI: 28192</p>
- <p>KEGG: C05818</p>
- <p>PUBCHEM: 8113</p>
- </html>
- </notes>
- </species>
- <species id="M_dctp_c" name="dCTP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C9H12N3O13P3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H12N3O13P3</p>
- <p>CHEBI: 16311</p>
- <p>KEGG: C00458</p>
- <p>PUBCHEM: 3742</p>
- </html>
- </notes>
- </species>
- <species id="M_acser_p" name="O-Acetyl-L-serine" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C5H9NO4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H9NO4</p>
- <p>CHEBI: 17981</p>
- <p>KEGG: C00979</p>
- <p>PUBCHEM: 4228</p>
- </html>
- </notes>
- </species>
- <species id="M_hdd2coa_c" name="trans-Hexadec-2-enoyl-CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H60N7O17P3S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C37H60N7O17P3S</p>
- <p>CHEBI: 28935</p>
- <p>KEGG: C05272</p>
- <p>PUBCHEM: 7659</p>
- </html>
- </notes>
- </species>
- <species id="M_4hba_c_boundary" name="4-Hydroxy-benzyl-alcohol" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C7H8O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C7H8O2</p>
- <p>PUBCHEM: 125??3480</p>
- <p>KEGG: 0</p>
- <p>CHEBI: 30746</p>
- </html>
- </notes>
- </species>
- <species id="M_5drib_c_boundary" name="5-deoxyribose" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C5H10O4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H10O4</p>
- <p>PUBCHEM: 3449</p>
- <p>KEGG: 0</p>
- <p>CHEBI: 30797</p>
- </html>
- </notes>
- </species>
- <species id="M_hmfurn_c_boundary" name="4-hydroxy-5-methyl-3-2H-furanone" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C5H6O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H6O3</p>
- <p>PUBCHEM: 4564493??3441</p>
- <p>KEGG: 0</p>
- <p>CHEBI: 11851 16530</p>
- </html>
- </notes>
- </species>
- <species id="M_oxam_c_boundary" name="Oxamate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H2NO3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C2H2NO3</p>
- <p>PUBCHEM: 4622</p>
- <p>KEGG: C01444</p>
- <p>CHEBI: 18058</p>
- </html>
- </notes>
- </species>
- <species id="M_chitob_e_boundary" name="Chitobiose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C16H28N2O11">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C16H28N2O11</p>
- <p>PUBCHEM: 4818</p>
- <p>KEGG: C01674</p>
- <p>CHEBI: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_pydxn_e_boundary" name="Pyridoxine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C8H11NO3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C8H11NO3</p>
- <p>PUBCHEM: 3608</p>
- <p>KEGG: C00314</p>
- <p>CHEBI: 16709</p>
- </html>
- </notes>
- </species>
- <species id="M_pydx_e_boundary" name="Pyridoxal" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C8H9NO3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C8H9NO3</p>
- <p>PUBCHEM: 3549</p>
- <p>KEGG: C00250</p>
- <p>CHEBI: 17310</p>
- </html>
- </notes>
- </species>
- <species id="M_12ppd__R_e_boundary" name="R-Propane-1-2-diol" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C3H8O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H8O2</p>
- <p>PUBCHEM: 5836</p>
- <p>KEGG: C02912</p>
- <p>CHEBI: 28972</p>
- </html>
- </notes>
- </species>
- <species id="M_12ppd__S_e_boundary" name="S-Propane-1-2-diol" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C3H8O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H8O2</p>
- <p>PUBCHEM: 5840</p>
- <p>KEGG: C02917</p>
- <p>CHEBI: 29002</p>
- </html>
- </notes>
- </species>
- <species id="M_14glucan_e_boundary" name="1-4-alpha-D-glucan" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C36H62O31">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C36H62O31</p>
- <p>PUBCHEM: 0</p>
- <p>KEGG: C00912</p>
- <p>CHEBI: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_15dap_e_boundary" name="1-5-Diaminopentane" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="2" fbc:chemicalFormula="C5H16N2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H16N2</p>
- <p>PUBCHEM: 4816</p>
- <p>KEGG: C01672</p>
- <p>CHEBI: 18127</p>
- </html>
- </notes>
- </species>
- <species id="M_23camp_e_boundary" name="2-3-Cyclic-AMP" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H11N5O6P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H11N5O6P</p>
- <p>PUBCHEM: 5400</p>
- <p>KEGG: C02353</p>
- <p>CHEBI: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_23ccmp_e_boundary" name="2-3-Cyclic-CMP" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H11N3O7P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H11N3O7P</p>
- <p>PUBCHEM: 5401</p>
- <p>KEGG: C02354</p>
- <p>CHEBI: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_23cgmp_e_boundary" name="2-3-Cyclic-GMP" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H11N5O7P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H11N5O7P</p>
- <p>PUBCHEM: 8444</p>
- <p>KEGG: C06194</p>
- <p>CHEBI: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_23cump_e_boundary" name="2-3-Cyclic-UMP" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H10N2O8P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H10N2O8P</p>
- <p>PUBCHEM: 5402</p>
- <p>KEGG: C02355</p>
- <p>CHEBI: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_23dappa_e_boundary" name="2-3-diaminopropionate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="1" fbc:chemicalFormula="C3H9N2O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H9N2O2</p>
- <p>PUBCHEM: 8629</p>
- <p>KEGG: C06393</p>
- <p>CHEBI: 18383</p>
- </html>
- </notes>
- </species>
- <species id="M_26dap__M_e_boundary" name="meso-2-6-Diaminoheptanedioate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C7H14N2O4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C7H14N2O4</p>
- <p>PUBCHEM: 3949</p>
- <p>KEGG: C00680</p>
- <p>CHEBI: 16488 30308</p>
- </html>
- </notes>
- </species>
- <species id="M_2ddglcn_e_boundary" name="2-Dehydro-3-deoxy-D-gluconate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H9O6</p>
- <p>PUBCHEM: 3504</p>
- <p>KEGG: C00204</p>
- <p>CHEBI: 17032</p>
- </html>
- </notes>
- </species>
- <species id="M_34dhpac_e_boundary" name="3-4-Dihydroxyphenylacetaldehyde" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C8H8O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C8H8O3</p>
- <p>PUBCHEM: 6744</p>
- <p>KEGG: C04043</p>
- <p>CHEBI: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_3amp_e_boundary" name="3-AMP" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O7P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H12N5O7P</p>
- <p>PUBCHEM: 4566</p>
- <p>KEGG: C01367</p>
- <p>CHEBI: 28931</p>
- </html>
- </notes>
- </species>
- <species id="M_3cmp_e_boundary" name="3-cmp" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H12N3O8P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H12N3O8P</p>
- <p>PUBCHEM: 8117</p>
- <p>KEGG: C05822</p>
- <p>CHEBI: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_3gmp_e_boundary" name="3-GMP" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O8P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H12N5O8P</p>
- <p>PUBCHEM: 8443</p>
- <p>KEGG: C06193</p>
- <p>CHEBI: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_3hcinnm_e_boundary" name="3-hydroxycinnamic-acid" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H7O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H7O3</p>
- <p>PUBCHEM: 0</p>
- <p>KEGG: 0</p>
- <p>CHEBI: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_3hpppn_e_boundary" name="3-3-hydroxy-phenyl-propionate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H9O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H9O3</p>
- <p>PUBCHEM: 0</p>
- <p>KEGG: 0</p>
- <p>CHEBI: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_3ump_e_boundary" name="3-UMP" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H11N2O9P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H11N2O9P</p>
- <p>PUBCHEM: 4567</p>
- <p>KEGG: C01368</p>
- <p>CHEBI: 28895</p>
- </html>
- </notes>
- </species>
- <species id="M_4abut_e_boundary" name="4-Aminobutanoate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C4H9NO2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H9NO2</p>
- <p>PUBCHEM: 3628</p>
- <p>KEGG: C00334</p>
- <p>CHEBI: 16865</p>
- </html>
- </notes>
- </species>
- <species id="M_4hoxpacd_e_boundary" name="4-Hydroxyphenylacetaldehyde" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C8H8O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C8H8O2</p>
- <p>PUBCHEM: 6521</p>
- <p>KEGG: C03765</p>
- <p>CHEBI: 15621</p>
- </html>
- </notes>
- </species>
- <species id="M_5dglcn_e_boundary" name="5-Dehydro-D-gluconate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O7">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H9O7</p>
- <p>PUBCHEM: 4301</p>
- <p>KEGG: C01062</p>
- <p>CHEBI: 17426</p>
- </html>
- </notes>
- </species>
- <species id="M_LalaDgluMdapDala_e_boundary" name="L-alanine-D-glutamate-meso-2-6-diaminoheptanedioate-D-alanine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H30N5O9">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C18H30N5O9</p>
- <p>PUBCHEM: 0</p>
- <p>KEGG: 0</p>
- <p>CHEBI: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_LalaDgluMdap_e_boundary" name="L-alanine-D-glutamate-meso-2-6-diaminoheptanedioate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H25N4O8">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C15H25N4O8</p>
- <p>PUBCHEM: 0</p>
- <p>KEGG: 0</p>
- <p>CHEBI: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_ac_e_boundary" name="Acetate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H3O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C2H3O2</p>
- <p>PUBCHEM: 3335</p>
- <p>KEGG: C00033</p>
- <p>CHEBI: 15366</p>
- </html>
- </notes>
- </species>
- <species id="M_acac_e_boundary" name="Acetoacetate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H5O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H5O3</p>
- <p>PUBCHEM: 3464</p>
- <p>KEGG: C00164</p>
- <p>CHEBI: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_acald_e_boundary" name="Acetaldehyde" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C2H4O">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C2H4O</p>
- <p>PUBCHEM: 3384</p>
- <p>KEGG: C00084</p>
- <p>CHEBI: 15343</p>
- </html>
- </notes>
- </species>
- <species id="M_acgal1p_e_boundary" name="N-Acetyl-D-galactosamine-1-phosphate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C8H14NO9P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C8H14NO9P</p>
- <p>PUBCHEM: 0</p>
- <p>KEGG: 0</p>
- <p>CHEBI: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_acgal_e_boundary" name="N-Acetyl-D-galactosamine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C8H15NO6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C8H15NO6</p>
- <p>PUBCHEM: 4363</p>
- <p>KEGG: C01132</p>
- <p>CHEBI: 28037</p>
- </html>
- </notes>
- </species>
- <species id="M_acgam1p_e_boundary" name="N-Acetyl-D-glucosamine-1-phosphate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C8H14NO9P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C8H14NO9P</p>
- <p>PUBCHEM: 6921</p>
- <p>KEGG: C04256</p>
- <p>CHEBI: 7125</p>
- </html>
- </notes>
- </species>
- <species id="M_acgam_e_boundary" name="N-Acetyl-D-glucosamine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C8H15NO6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C8H15NO6</p>
- <p>PUBCHEM: 3440</p>
- <p>KEGG: C00140</p>
- <p>CHEBI: 17411</p>
- </html>
- </notes>
- </species>
- <species id="M_acmana_e_boundary" name="N-Acetyl-D-mannosamine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C8H15NO6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C8H15NO6</p>
- <p>PUBCHEM: 3918</p>
- <p>KEGG: C00645</p>
- <p>CHEBI: 17122</p>
- </html>
- </notes>
- </species>
- <species id="M_acmum_e_boundary" name="N-Acetylmuramate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H18NO8">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C11H18NO8</p>
- <p>PUBCHEM: 5676</p>
- <p>KEGG: C02713</p>
- <p>CHEBI: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_acnam_e_boundary" name="N-Acetylneuraminate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H18NO9">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C11H18NO9</p>
- <p>PUBCHEM: 3568</p>
- <p>KEGG: C00270</p>
- <p>CHEBI: 17012</p>
- </html>
- </notes>
- </species>
- <species id="M_acolipa_e_boundary" name="4-Amino-4-deoxy-L-arabinose-modified-core-oligosaccharide-lipid-A" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-9" fbc:chemicalFormula="C181H314N3O103P4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C181H314N3O103P4</p>
- <p>PUBCHEM: 0</p>
- <p>KEGG: 0</p>
- <p>CHEBI: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_acser_e_boundary" name="O-Acetyl-L-serine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C5H9NO4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H9NO4</p>
- <p>PUBCHEM: 4228</p>
- <p>KEGG: C00979</p>
- <p>CHEBI: 17981</p>
- </html>
- </notes>
- </species>
- <species id="M_ade_e_boundary" name="Adenine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C5H5N5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H5N5</p>
- <p>PUBCHEM: 3447</p>
- <p>KEGG: C00147</p>
- <p>CHEBI: 16708</p>
- </html>
- </notes>
- </species>
- <species id="M_adn_e_boundary" name="Adenosine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C10H13N5O4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H13N5O4</p>
- <p>PUBCHEM: 3512</p>
- <p>KEGG: C00212</p>
- <p>CHEBI: 16335</p>
- </html>
- </notes>
- </species>
- <species id="M_adocbl_e_boundary" name="Adenosylcobalamin" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C72H100CoN18O17P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C72H100CoN18O17P</p>
- <p>PUBCHEM: 3494</p>
- <p>KEGG: C00194</p>
- <p>CHEBI: 18408</p>
- </html>
- </notes>
- </species>
- <species id="M_ag_e_boundary" name="silver" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="1" fbc:chemicalFormula="Ag">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: Ag</p>
- <p>PUBCHEM: 8935</p>
- <p>KEGG: C06710</p>
- <p>CHEBI: 9141</p>
- </html>
- </notes>
- </species>
- <species id="M_agm_e_boundary" name="Agmatine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="2" fbc:chemicalFormula="C5H16N4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H16N4</p>
- <p>PUBCHEM: 3479</p>
- <p>KEGG: C00179</p>
- <p>CHEBI: 17431</p>
- </html>
- </notes>
- </species>
- <species id="M_akg_e_boundary" name="2-Oxoglutarate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H4O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H4O5</p>
- <p>PUBCHEM: 3328</p>
- <p>KEGG: C00026</p>
- <p>CHEBI: 30915</p>
- </html>
- </notes>
- </species>
- <species id="M_ala__B_e_boundary" name="beta-Alanine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C3H7NO2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H7NO2</p>
- <p>PUBCHEM: 3399</p>
- <p>KEGG: C00099</p>
- <p>CHEBI: 16958</p>
- </html>
- </notes>
- </species>
- <species id="M_ala__D_e_boundary" name="D-Alanine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C3H7NO2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H7NO2</p>
- <p>PUBCHEM: 3433</p>
- <p>KEGG: C00133</p>
- <p>CHEBI: 15570</p>
- </html>
- </notes>
- </species>
- <species id="M_ala__L_e_boundary" name="L-Alanine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C3H7NO2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H7NO2</p>
- <p>PUBCHEM: 3343</p>
- <p>KEGG: C00041</p>
- <p>CHEBI: 16977</p>
- </html>
- </notes>
- </species>
- <species id="M_alaala_e_boundary" name="D-Alanyl-D-alanine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C6H12N2O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H12N2O3</p>
- <p>PUBCHEM: 4239</p>
- <p>KEGG: C00993</p>
- <p>CHEBI: 16576</p>
- </html>
- </notes>
- </species>
- <species id="M_all__D_e_boundary" name="D-Allose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C6H12O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H12O6</p>
- <p>PUBCHEM: 4657</p>
- <p>KEGG: C01487</p>
- <p>CHEBI: 4093</p>
- </html>
- </notes>
- </species>
- <species id="M_alltn_e_boundary" name="Allantoin" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C4H6N4O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H6N4O3</p>
- <p>PUBCHEM: 4709</p>
- <p>KEGG: C01551</p>
- <p>CHEBI: 15676</p>
- </html>
- </notes>
- </species>
- <species id="M_amp_e_boundary" name="AMP" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O7P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H12N5O7P</p>
- <p>PUBCHEM: 3322</p>
- <p>KEGG: C00020</p>
- <p>CHEBI: 16027</p>
- </html>
- </notes>
- </species>
- <species id="M_anhgm_e_boundary" name="N-Acetyl-D-glucosamine-anhydrous-N-Acetylmuramic-acid" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H29N2O12">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C19H29N2O12</p>
- <p>PUBCHEM: 0</p>
- <p>KEGG: 0</p>
- <p>CHEBI: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_arab__L_e_boundary" name="L-Arabinose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C5H10O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H10O5</p>
- <p>PUBCHEM: 3558</p>
- <p>KEGG: C00259</p>
- <p>CHEBI: 17535</p>
- </html>
- </notes>
- </species>
- <species id="M_arbtn_e_boundary" name="aerobactin-minus-Fe3" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-3" fbc:chemicalFormula="C22H33N4O13">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C22H33N4O13</p>
- <p>PUBCHEM: 0</p>
- <p>KEGG: 0</p>
- <p>CHEBI: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_arbtn__fe3_e_boundary" name="Aerobactin" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C22H33FeN4O13">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C22H33FeN4O13</p>
- <p>PUBCHEM: 7887</p>
- <p>KEGG: C05554</p>
- <p>CHEBI: 18157</p>
- </html>
- </notes>
- </species>
- <species id="M_arg__L_e_boundary" name="L-Arginine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H15N4O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H15N4O2</p>
- <p>PUBCHEM: 3362</p>
- <p>KEGG: C00062</p>
- <p>CHEBI: 16467</p>
- </html>
- </notes>
- </species>
- <species id="M_ascb__L_e_boundary" name="L-Ascorbate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C6H8O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H8O6</p>
- <p>PUBCHEM: 3372</p>
- <p>KEGG: C00072</p>
- <p>CHEBI: 29073 38290</p>
- </html>
- </notes>
- </species>
- <species id="M_asn__L_e_boundary" name="L-Asparagine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C4H8N2O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H8N2O3</p>
- <p>PUBCHEM: 3452</p>
- <p>KEGG: C00152</p>
- <p>CHEBI: 17196</p>
- </html>
- </notes>
- </species>
- <species id="M_aso3_e_boundary" name="arsenite" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-3" fbc:chemicalFormula="AsO3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: AsO3</p>
- <p>PUBCHEM: 8922</p>
- <p>KEGG: C06697</p>
- <p>CHEBI: 29866</p>
- </html>
- </notes>
- </species>
- <species id="M_asp__L_e_boundary" name="L-Aspartate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H6NO4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H6NO4</p>
- <p>PUBCHEM: 3351</p>
- <p>KEGG: C00049</p>
- <p>CHEBI: 17053</p>
- </html>
- </notes>
- </species>
- <species id="M_but_e_boundary" name="Butyrate-n-C40" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H7O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H7O2</p>
- <p>PUBCHEM: 3545</p>
- <p>KEGG: C00246</p>
- <p>CHEBI: 30772</p>
- </html>
- </notes>
- </species>
- <species id="M_butso3_e_boundary" name="butanesulfonate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H9O3S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H9O3S</p>
- <p>PUBCHEM: 0</p>
- <p>KEGG: 0</p>
- <p>CHEBI: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_ca2_e_boundary" name="Calcium" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="2" fbc:chemicalFormula="Ca">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: Ca</p>
- <p>PUBCHEM: 3376</p>
- <p>KEGG: C00076</p>
- <p>CHEBI: 29108</p>
- </html>
- </notes>
- </species>
- <species id="M_cbi_e_boundary" name="Cobinamide" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C48H72CoN11O8">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C48H72CoN11O8</p>
- <p>PUBCHEM: 8069</p>
- <p>KEGG: C05774</p>
- <p>CHEBI: 28956</p>
- </html>
- </notes>
- </species>
- <species id="M_cbl1_e_boundary" name="Cob-I-alamin" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C62H88CoN13O14P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C62H88CoN13O14P</p>
- <p>PUBCHEM: 4110</p>
- <p>KEGG: C00853</p>
- <p>CHEBI: 15982</p>
- </html>
- </notes>
- </species>
- <species id="M_cd2_e_boundary" name="Cadmium" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="2" fbc:chemicalFormula="Cd">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: Cd</p>
- <p>PUBCHEM: 4601</p>
- <p>KEGG: C01413</p>
- <p>CHEBI: 48775</p>
- </html>
- </notes>
- </species>
- <species id="M_cgly_e_boundary" name="Cys-Gly" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C5H10N2O3S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H10N2O3S</p>
- <p>PUBCHEM: 4606</p>
- <p>KEGG: C01419</p>
- <p>CHEBI: 4047</p>
- </html>
- </notes>
- </species>
- <species id="M_chol_e_boundary" name="Choline" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="1" fbc:chemicalFormula="C5H14NO">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H14NO</p>
- <p>PUBCHEM: 3414</p>
- <p>KEGG: C00114</p>
- <p>CHEBI: 15354</p>
- </html>
- </notes>
- </species>
- <species id="M_cit_e_boundary" name="Citrate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H5O7">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H5O7</p>
- <p>PUBCHEM: 3458</p>
- <p>KEGG: C00158</p>
- <p>CHEBI: 30769</p>
- </html>
- </notes>
- </species>
- <species id="M_icit_e_boundary" name="Isocitrate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H5O7">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H5O7</p>
- <p>PUBCHEM: 3605</p>
- <p>KEGG: C00311</p>
- <p>CHEBI: 30887</p>
- </html>
- </notes>
- </species>
- <species id="M_acon__C_e_boundary" name="cis-Aconitate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H3O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H3O6</p>
- <p>PUBCHEM: 3707</p>
- <p>KEGG: C00417</p>
- <p>CHEBI: 32805</p>
- </html>
- </notes>
- </species>
- <species id="M_cl_e_boundary" name="Chloride" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="Cl">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: Cl</p>
- <p>PUBCHEM: 3415</p>
- <p>KEGG: C00115</p>
- <p>CHEBI: 17996</p>
- </html>
- </notes>
- </species>
- <species id="M_cmp_e_boundary" name="CMP" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H12N3O8P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H12N3O8P</p>
- <p>PUBCHEM: 3357</p>
- <p>KEGG: C00055</p>
- <p>CHEBI: 17361</p>
- </html>
- </notes>
- </species>
- <species id="M_co2_e_boundary" name="CO2" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="CO2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: CO2</p>
- <p>PUBCHEM: 3313</p>
- <p>KEGG: C00011</p>
- <p>CHEBI: 16526</p>
- </html>
- </notes>
- </species>
- <species id="M_cobalt2_e_boundary" name="Co2" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="2" fbc:chemicalFormula="Co">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: Co</p>
- <p>PUBCHEM: 3475</p>
- <p>KEGG: C00175</p>
- <p>CHEBI: 27638</p>
- </html>
- </notes>
- </species>
- <species id="M_colipa_e_boundary" name="core-oligosaccharide-lipid-A" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-11" fbc:chemicalFormula="C176H303N2O100P4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C176H303N2O100P4</p>
- <p>PUBCHEM: 0</p>
- <p>KEGG: 0</p>
- <p>CHEBI: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_cpgn_e_boundary" name="coprogen" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C35H52N6O13Fe">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C35H52N6O13Fe</p>
- <p>PUBCHEM: 0</p>
- <p>KEGG: 0</p>
- <p>CHEBI: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_cpgn__un_e_boundary" name="coprogen-unloaded-no-Fe-III-" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H52N6O13">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C35H52N6O13</p>
- <p>PUBCHEM: 0</p>
- <p>KEGG: 0</p>
- <p>CHEBI: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_crn_e_boundary" name="L-Carnitine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C7H15NO3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C7H15NO3</p>
- <p>PUBCHEM: 3612</p>
- <p>KEGG: C00318</p>
- <p>CHEBI: 16347</p>
- </html>
- </notes>
- </species>
- <species id="M_csn_e_boundary" name="Cytosine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C4H5N3O">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H5N3O</p>
- <p>PUBCHEM: 3670</p>
- <p>KEGG: C00380</p>
- <p>CHEBI: 16040</p>
- </html>
- </notes>
- </species>
- <species id="M_cu2_e_boundary" name="Cu2" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="2" fbc:chemicalFormula="Cu">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: Cu</p>
- <p>PUBCHEM: 3370</p>
- <p>KEGG: C00070</p>
- <p>CHEBI: 28694</p>
- </html>
- </notes>
- </species>
- <species id="M_cu_e_boundary" name="Cu" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="1" fbc:chemicalFormula="Cu">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: Cu</p>
- <p>PUBCHEM: 0</p>
- <p>KEGG: 0</p>
- <p>CHEBI: 49552</p>
- </html>
- </notes>
- </species>
- <species id="M_cyan_e_boundary" name="Hydrogen-cyanide" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="CHN">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: CHN</p>
- <p>PUBCHEM: 4537</p>
- <p>KEGG: C01326</p>
- <p>CHEBI: 18407</p>
- </html>
- </notes>
- </species>
- <species id="M_cynt_e_boundary" name="Cyanate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="CNO">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: CNO</p>
- <p>PUBCHEM: 4604</p>
- <p>KEGG: C01417</p>
- <p>CHEBI: 28024</p>
- </html>
- </notes>
- </species>
- <species id="M_cys__D_e_boundary" name="D-Cysteine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C3H7NO2S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H7NO2S</p>
- <p>PUBCHEM: 4051</p>
- <p>KEGG: C00793</p>
- <p>CHEBI: 16375</p>
- </html>
- </notes>
- </species>
- <species id="M_cys__L_e_boundary" name="L-Cysteine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C3H7NO2S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H7NO2S</p>
- <p>PUBCHEM: 3397</p>
- <p>KEGG: C00097</p>
- <p>CHEBI: 17561</p>
- </html>
- </notes>
- </species>
- <species id="M_cysi__L_e_boundary" name="L-Cystine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C6H12N2O4S2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H12N2O4S2</p>
- <p>PUBCHEM: 3774</p>
- <p>KEGG: C00491</p>
- <p>CHEBI: 16283</p>
- </html>
- </notes>
- </species>
- <species id="M_cytd_e_boundary" name="Cytidine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C9H13N3O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H13N3O5</p>
- <p>PUBCHEM: 3758</p>
- <p>KEGG: C00475</p>
- <p>CHEBI: 17562</p>
- </html>
- </notes>
- </species>
- <species id="M_dad__2_e_boundary" name="Deoxyadenosine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C10H13N5O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H13N5O3</p>
- <p>PUBCHEM: 3839</p>
- <p>KEGG: C00559</p>
- <p>CHEBI: 17256</p>
- </html>
- </notes>
- </species>
- <species id="M_damp_e_boundary" name="dAMP" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O6P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H12N5O6P</p>
- <p>PUBCHEM: 3651</p>
- <p>KEGG: C00360</p>
- <p>CHEBI: 17713</p>
- </html>
- </notes>
- </species>
- <species id="M_dca_e_boundary" name="Decanoate-n-C100" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H19O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H19O2</p>
- <p>PUBCHEM: 4728</p>
- <p>KEGG: C01571</p>
- <p>CHEBI: 30813</p>
- </html>
- </notes>
- </species>
- <species id="M_dcmp_e_boundary" name="dCMP" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H12N3O7P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H12N3O7P</p>
- <p>PUBCHEM: 3538</p>
- <p>KEGG: C00239</p>
- <p>CHEBI: 15918</p>
- </html>
- </notes>
- </species>
- <species id="M_dcyt_e_boundary" name="Deoxycytidine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C9H13N3O4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H13N3O4</p>
- <p>PUBCHEM: 4137</p>
- <p>KEGG: C00881</p>
- <p>CHEBI: 15698</p>
- </html>
- </notes>
- </species>
- <species id="M_ddca_e_boundary" name="Dodecanoate-n-C120" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C12H23O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C12H23O2</p>
- <p>PUBCHEM: 5649</p>
- <p>KEGG: C02679</p>
- <p>CHEBI: 30805</p>
- </html>
- </notes>
- </species>
- <species id="M_dgmp_e_boundary" name="dGMP" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O7P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H12N5O7P</p>
- <p>PUBCHEM: 3653</p>
- <p>KEGG: C00362</p>
- <p>CHEBI: 16192</p>
- </html>
- </notes>
- </species>
- <species id="M_dgsn_e_boundary" name="Deoxyguanosine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C10H13N5O4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H13N5O4</p>
- <p>PUBCHEM: 3624</p>
- <p>KEGG: C00330</p>
- <p>CHEBI: 17172</p>
- </html>
- </notes>
- </species>
- <species id="M_dha_e_boundary" name="Dihydroxyacetone" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C3H6O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H6O3</p>
- <p>PUBCHEM: 3484</p>
- <p>KEGG: C00184</p>
- <p>CHEBI: 16016</p>
- </html>
- </notes>
- </species>
- <species id="M_dimp_e_boundary" name="dIMP" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H11N4O7P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H11N4O7P</p>
- <p>PUBCHEM: 8446</p>
- <p>KEGG: C06196</p>
- <p>CHEBI: 28806</p>
- </html>
- </notes>
- </species>
- <species id="M_din_e_boundary" name="Deoxyinosine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C10H12N4O4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H12N4O4</p>
- <p>PUBCHEM: 7859</p>
- <p>KEGG: C05512</p>
- <p>CHEBI: 28997</p>
- </html>
- </notes>
- </species>
- <species id="M_dms_e_boundary" name="Dimethyl-sulfide" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C2H6S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C2H6S</p>
- <p>PUBCHEM: 3859</p>
- <p>KEGG: C00580</p>
- <p>CHEBI: 17437</p>
- </html>
- </notes>
- </species>
- <species id="M_dmso_e_boundary" name="Dimethyl-sulfoxide" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C2H6OS">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C2H6OS</p>
- <p>PUBCHEM: 13325</p>
- <p>KEGG: C11143</p>
- <p>CHEBI: 28262</p>
- </html>
- </notes>
- </species>
- <species id="M_dopa_e_boundary" name="Dopamine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="1" fbc:chemicalFormula="C8H12NO2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C8H12NO2</p>
- <p>PUBCHEM: 6517</p>
- <p>KEGG: C03758</p>
- <p>CHEBI: 18243</p>
- </html>
- </notes>
- </species>
- <species id="M_dtmp_e_boundary" name="dTMP" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H13N2O8P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H13N2O8P</p>
- <p>PUBCHEM: 3655</p>
- <p>KEGG: C00364</p>
- <p>CHEBI: 17013</p>
- </html>
- </notes>
- </species>
- <species id="M_dump_e_boundary" name="dUMP" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H11N2O8P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H11N2O8P</p>
- <p>PUBCHEM: 3656</p>
- <p>KEGG: C00365</p>
- <p>CHEBI: 17622</p>
- </html>
- </notes>
- </species>
- <species id="M_duri_e_boundary" name="Deoxyuridine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C9H12N2O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H12N2O5</p>
- <p>PUBCHEM: 3809</p>
- <p>KEGG: C00526</p>
- <p>CHEBI: 16450</p>
- </html>
- </notes>
- </species>
- <species id="M_eca4colipa_e_boundary" name="enterobacterial-common-antigen-x4-core-oligosaccharide-lipid-A" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-15" fbc:chemicalFormula="C272H447N14O160P4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C272H447N14O160P4</p>
- <p>PUBCHEM: 0</p>
- <p>KEGG: 0</p>
- <p>CHEBI: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_enlipa_e_boundary" name="phosphoethanolamine-KDO-2-lipid-A" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-6" fbc:chemicalFormula="C112H202N3O42P3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C112H202N3O42P3</p>
- <p>PUBCHEM: 0</p>
- <p>KEGG: 0</p>
- <p>CHEBI: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_enter_e_boundary" name="Enterochelin" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C30H27N3O15">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C30H27N3O15</p>
- <p>PUBCHEM: 8116</p>
- <p>KEGG: C05821</p>
- <p>CHEBI: 28855</p>
- </html>
- </notes>
- </species>
- <species id="M_etha_e_boundary" name="Ethanolamine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="1" fbc:chemicalFormula="C2H8NO">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C2H8NO</p>
- <p>PUBCHEM: 3489</p>
- <p>KEGG: C00189</p>
- <p>CHEBI: 16000</p>
- </html>
- </notes>
- </species>
- <species id="M_ethso3_e_boundary" name="ethanesulfonate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H5O3S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C2H5O3S</p>
- <p>PUBCHEM: 0</p>
- <p>KEGG: 0</p>
- <p>CHEBI: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_etoh_e_boundary" name="Ethanol" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C2H6O">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C2H6O</p>
- <p>PUBCHEM: 3752</p>
- <p>KEGG: C00469</p>
- <p>CHEBI: 16236</p>
- </html>
- </notes>
- </species>
- <species id="M_f6p_e_boundary" name="D-Fructose-6-phosphate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H11O9P</p>
- <p>PUBCHEM: 3385</p>
- <p>KEGG: C00085</p>
- <p>CHEBI: 15946</p>
- </html>
- </notes>
- </species>
- <species id="M_fald_e_boundary" name="Formaldehyde" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="CH2O">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: CH2O</p>
- <p>PUBCHEM: 3367</p>
- <p>KEGG: C00067</p>
- <p>CHEBI: 16842</p>
- </html>
- </notes>
- </species>
- <species id="M_fe2_e_boundary" name="Fe2" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="2" fbc:chemicalFormula="Fe">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: Fe</p>
- <p>PUBCHEM: 3325</p>
- <p>KEGG: C00023</p>
- <p>CHEBI: 18248</p>
- </html>
- </notes>
- </species>
- <species id="M_fe3_e_boundary" name="Fe3" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="3" fbc:chemicalFormula="Fe">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: Fe</p>
- <p>PUBCHEM: 0</p>
- <p>KEGG: 0</p>
- <p>CHEBI: 14819</p>
- </html>
- </notes>
- </species>
- <species id="M_fe3dcit_e_boundary" name="Fe-III-dicitrate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-3" fbc:chemicalFormula="C12H10FeO14">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C12H10FeO14</p>
- <p>PUBCHEM: 8472</p>
- <p>KEGG: C06229</p>
- <p>CHEBI: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_fe3dhbzs_e_boundary" name="ferric-2-3-dihydroxybenzoylserine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="2" fbc:chemicalFormula="C10H10NO6Fe">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H10NO6Fe</p>
- <p>PUBCHEM: 0</p>
- <p>KEGG: 0</p>
- <p>CHEBI: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_fe3hox_e_boundary" name="Fe-III-hydroxamate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C9H18O6N3Fe">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H18O6N3Fe</p>
- <p>PUBCHEM: 8470</p>
- <p>KEGG: C06227</p>
- <p>CHEBI: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_fe3hox__un_e_boundary" name="Fe-III-hydoxamate-unloaded" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-3" fbc:chemicalFormula="C9H18O6N3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H18O6N3</p>
- <p>PUBCHEM: 0</p>
- <p>KEGG: 0</p>
- <p>CHEBI: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_fecrm_e_boundary" name="Ferrichrome" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C27H42FeN9O12">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C27H42FeN9O12</p>
- <p>PUBCHEM: 8471</p>
- <p>KEGG: C06228</p>
- <p>CHEBI: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_fecrm__un_e_boundary" name="Ferrichrome-minus-Fe-III" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-3" fbc:chemicalFormula="C27H42N9O12">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C27H42N9O12</p>
- <p>PUBCHEM: 0</p>
- <p>KEGG: 0</p>
- <p>CHEBI: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_feenter_e_boundary" name="Fe-enterobactin" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="3" fbc:chemicalFormula="C30H27FeN3O15">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C30H27FeN3O15</p>
- <p>PUBCHEM: 8473</p>
- <p>KEGG: C06230</p>
- <p>CHEBI: 28199</p>
- </html>
- </notes>
- </species>
- <species id="M_feoxam_e_boundary" name="ferroxamine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="1" fbc:chemicalFormula="C25H46FeN6O8">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C25H46FeN6O8</p>
- <p>PUBCHEM: 9799</p>
- <p>KEGG: C07597</p>
- <p>CHEBI: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_feoxam__un_e_boundary" name="ferroxamine-minus-Fe-3" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C25H46N6O8">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C25H46N6O8</p>
- <p>PUBCHEM: 0</p>
- <p>KEGG: 0</p>
- <p>CHEBI: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_for_e_boundary" name="Formate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="CH1O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: CH1O2</p>
- <p>PUBCHEM: 3358</p>
- <p>KEGG: C00058</p>
- <p>CHEBI: 30751</p>
- </html>
- </notes>
- </species>
- <species id="M_fru_e_boundary" name="D-Fructose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C6H12O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H12O6</p>
- <p>PUBCHEM: 3395</p>
- <p>KEGG: C00095</p>
- <p>CHEBI: 15824</p>
- </html>
- </notes>
- </species>
- <species id="M_frulys_e_boundary" name="fructoselysine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="1" fbc:chemicalFormula="C12H25N2O7">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C12H25N2O7</p>
- <p>PUBCHEM: 47205784</p>
- <p>KEGG: C16488</p>
- <p>CHEBI: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_fruur_e_boundary" name="D-Fructuronate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O7">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H9O7</p>
- <p>PUBCHEM: 4160</p>
- <p>KEGG: C00905</p>
- <p>CHEBI: 4126</p>
- </html>
- </notes>
- </species>
- <species id="M_fuc__L_e_boundary" name="L-Fucose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C6H12O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H12O5</p>
- <p>PUBCHEM: 4264</p>
- <p>KEGG: C01019</p>
- <p>CHEBI: 2181</p>
- </html>
- </notes>
- </species>
- <species id="M_fum_e_boundary" name="Fumarate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H2O4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H2O4</p>
- <p>PUBCHEM: 3422</p>
- <p>KEGG: C00122</p>
- <p>CHEBI: 18012</p>
- </html>
- </notes>
- </species>
- <species id="M_g1p_e_boundary" name="D-Glucose-1-phosphate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H11O9P</p>
- <p>PUBCHEM: 3403</p>
- <p>KEGG: C00103</p>
- <p>CHEBI: 16077 29042</p>
- </html>
- </notes>
- </species>
- <species id="M_g3pc_e_boundary" name="sn-Glycero-3-phosphocholine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C8H20NO6P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C8H20NO6P</p>
- <p>PUBCHEM: 3939</p>
- <p>KEGG: C00670</p>
- <p>CHEBI: 16870</p>
- </html>
- </notes>
- </species>
- <species id="M_g3pe_e_boundary" name="sn-Glycero-3-phosphoethanolamine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C5H14NO6P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H14NO6P</p>
- <p>PUBCHEM: 4454</p>
- <p>KEGG: C01233</p>
- <p>CHEBI: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_g3pg_e_boundary" name="Glycerophosphoglycerol" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H14O8P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H14O8P</p>
- <p>PUBCHEM: 6135</p>
- <p>KEGG: C03274</p>
- <p>CHEBI: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_g3pi_e_boundary" name="sn-Glycero-3-phospho-1-inositol" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H18O11P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H18O11P</p>
- <p>PUBCHEM: 4447</p>
- <p>KEGG: C01225</p>
- <p>CHEBI: 18321</p>
- </html>
- </notes>
- </species>
- <species id="M_g3ps_e_boundary" name="Glycerophosphoserine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H13NO8P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H13NO8P</p>
- <p>PUBCHEM: 3081457</p>
- <p>KEGG: 0</p>
- <p>CHEBI: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_g6p_e_boundary" name="D-Glucose-6-phosphate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H11O9P</p>
- <p>PUBCHEM: 3392</p>
- <p>KEGG: C00092</p>
- <p>CHEBI: 4170</p>
- </html>
- </notes>
- </species>
- <species id="M_gal1p_e_boundary" name="alpha-D-Galactose-1-phosphate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H11O9P</p>
- <p>PUBCHEM: 3734</p>
- <p>KEGG: C00446</p>
- <p>CHEBI: 17973</p>
- </html>
- </notes>
- </species>
- <species id="M_gal__bD_e_boundary" name="beta-D-Galactose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C6H12O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H12O6</p>
- <p>PUBCHEM: 4738</p>
- <p>KEGG: C01582</p>
- <p>CHEBI: 28260</p>
- </html>
- </notes>
- </species>
- <species id="M_gal_e_boundary" name="D-Galactose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C6H12O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H12O6</p>
- <p>PUBCHEM: 3424</p>
- <p>KEGG: C00124</p>
- <p>CHEBI: 4139</p>
- </html>
- </notes>
- </species>
- <species id="M_galct__D_e_boundary" name="D-Galactarate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H8O8">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H8O8</p>
- <p>PUBCHEM: 4135</p>
- <p>KEGG: C00879</p>
- <p>CHEBI: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_galctn__D_e_boundary" name="D-Galactonate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O7">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H11O7</p>
- <p>PUBCHEM: 4136</p>
- <p>KEGG: C00880</p>
- <p>CHEBI: 12931 16534</p>
- </html>
- </notes>
- </species>
- <species id="M_galctn__L_e_boundary" name="L-Galactonate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O7">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H11O7</p>
- <p>PUBCHEM: 47205248</p>
- <p>KEGG: C15930</p>
- <p>CHEBI: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_galt_e_boundary" name="Galactitol" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C6H14O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H14O6</p>
- <p>PUBCHEM: 4837</p>
- <p>KEGG: C01697</p>
- <p>CHEBI: 16813</p>
- </html>
- </notes>
- </species>
- <species id="M_galur_e_boundary" name="D-Galacturonate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O7">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H9O7</p>
- <p>PUBCHEM: 3627</p>
- <p>KEGG: C00333</p>
- <p>CHEBI: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_gam6p_e_boundary" name="D-Glucosamine-6-phosphate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H13NO8P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H13NO8P</p>
- <p>PUBCHEM: 3645</p>
- <p>KEGG: C00352</p>
- <p>CHEBI: 15873</p>
- </html>
- </notes>
- </species>
- <species id="M_gam_e_boundary" name="D-Glucosamine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H14NO5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H14NO5</p>
- <p>PUBCHEM: 3623</p>
- <p>KEGG: C00329</p>
- <p>CHEBI: 47977</p>
- </html>
- </notes>
- </species>
- <species id="M_gbbtn_e_boundary" name="gamma-butyrobetaine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C7H15NO2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C7H15NO2</p>
- <p>PUBCHEM: 4408</p>
- <p>KEGG: C01181</p>
- <p>CHEBI: 1941</p>
- </html>
- </notes>
- </species>
- <species id="M_gdp_e_boundary" name="GDP" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H12N5O11P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H12N5O11P2</p>
- <p>PUBCHEM: 3337</p>
- <p>KEGG: C00035</p>
- <p>CHEBI: 17552</p>
- </html>
- </notes>
- </species>
- <species id="M_glc__D_e_boundary" name="D-Glucose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C6H12O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H12O6</p>
- <p>PUBCHEM: 3333</p>
- <p>KEGG: C00031</p>
- <p>CHEBI: 4167</p>
- </html>
- </notes>
- </species>
- <species id="M_glcn_e_boundary" name="D-Gluconate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O7">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H11O7</p>
- <p>PUBCHEM: 3556</p>
- <p>KEGG: C00257</p>
- <p>CHEBI: 33198</p>
- </html>
- </notes>
- </species>
- <species id="M_glcr_e_boundary" name="D-Glucarate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H8O8">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H8O8</p>
- <p>PUBCHEM: 4076</p>
- <p>KEGG: C00818</p>
- <p>CHEBI: 16002</p>
- </html>
- </notes>
- </species>
- <species id="M_glcur1p_e_boundary" name="D-Glucuronate-1-phosphate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H8O10P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H8O10P</p>
- <p>PUBCHEM: 7759</p>
- <p>KEGG: C05385</p>
- <p>CHEBI: 28547</p>
- </html>
- </notes>
- </species>
- <species id="M_glcur_e_boundary" name="D-Glucuronate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O7">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H9O7</p>
- <p>PUBCHEM: 3491</p>
- <p>KEGG: C00191</p>
- <p>CHEBI: 4178 47952</p>
- </html>
- </notes>
- </species>
- <species id="M_gln__L_e_boundary" name="L-Glutamine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C5H10N2O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H10N2O3</p>
- <p>PUBCHEM: 3364</p>
- <p>KEGG: C00064</p>
- <p>CHEBI: 18050</p>
- </html>
- </notes>
- </species>
- <species id="M_glu__L_e_boundary" name="L-Glutamate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H8NO4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H8NO4</p>
- <p>PUBCHEM: 3327</p>
- <p>KEGG: C00025</p>
- <p>CHEBI: 16015</p>
- </html>
- </notes>
- </species>
- <species id="M_gly_e_boundary" name="Glycine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C2H5NO2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C2H5NO2</p>
- <p>PUBCHEM: 3339</p>
- <p>KEGG: C00037</p>
- <p>CHEBI: 15428</p>
- </html>
- </notes>
- </species>
- <species id="M_glyald_e_boundary" name="D-Glyceraldehyde" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C3H6O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H6O3</p>
- <p>PUBCHEM: 3856</p>
- <p>KEGG: C00577</p>
- <p>CHEBI: 17378</p>
- </html>
- </notes>
- </species>
- <species id="M_glyb_e_boundary" name="Glycine-betaine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C5H11NO2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H11NO2</p>
- <p>PUBCHEM: 3985</p>
- <p>KEGG: C00719</p>
- <p>CHEBI: 17750</p>
- </html>
- </notes>
- </species>
- <species id="M_glyc2p_e_boundary" name="Glycerol-2-phosphate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H7O6P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H7O6P</p>
- <p>PUBCHEM: 5889</p>
- <p>KEGG: C02979</p>
- <p>CHEBI: 17270</p>
- </html>
- </notes>
- </species>
- <species id="M_glyc3p_e_boundary" name="Glycerol-3-phosphate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H7O6P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H7O6P</p>
- <p>PUBCHEM: 3393</p>
- <p>KEGG: C00093</p>
- <p>CHEBI: 15978</p>
- </html>
- </notes>
- </species>
- <species id="M_glyc__R_e_boundary" name="R-Glycerate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H5O4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H5O4</p>
- <p>PUBCHEM: 3557</p>
- <p>KEGG: C00258</p>
- <p>CHEBI: 32398</p>
- </html>
- </notes>
- </species>
- <species id="M_glyc_e_boundary" name="Glycerol" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C3H8O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H8O3</p>
- <p>PUBCHEM: 3416</p>
- <p>KEGG: C00116</p>
- <p>CHEBI: 17754</p>
- </html>
- </notes>
- </species>
- <species id="M_glyclt_e_boundary" name="Glycolate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H3O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C2H3O3</p>
- <p>PUBCHEM: 3460</p>
- <p>KEGG: C00160</p>
- <p>CHEBI: 17497</p>
- </html>
- </notes>
- </species>
- <species id="M_gmp_e_boundary" name="GMP" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O8P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H12N5O8P</p>
- <p>PUBCHEM: 3444</p>
- <p>KEGG: C00144</p>
- <p>CHEBI: 17345</p>
- </html>
- </notes>
- </species>
- <species id="M_gsn_e_boundary" name="Guanosine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C10H13N5O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H13N5O5</p>
- <p>PUBCHEM: 3677</p>
- <p>KEGG: C00387</p>
- <p>CHEBI: 16750</p>
- </html>
- </notes>
- </species>
- <species id="M_gthox_e_boundary" name="Oxidized-glutathione" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H30N6O12S2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C20H30N6O12S2</p>
- <p>PUBCHEM: 3427</p>
- <p>KEGG: C00127</p>
- <p>CHEBI: 17858</p>
- </html>
- </notes>
- </species>
- <species id="M_gthrd_e_boundary" name="Reduced-glutathione" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H16N3O6S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H16N3O6S</p>
- <p>PUBCHEM: 3353</p>
- <p>KEGG: C00051</p>
- <p>CHEBI: 16856</p>
- </html>
- </notes>
- </species>
- <species id="M_gtp_e_boundary" name="GTP" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H12N5O14P3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H12N5O14P3</p>
- <p>PUBCHEM: 3346</p>
- <p>KEGG: C00044</p>
- <p>CHEBI: 15996</p>
- </html>
- </notes>
- </species>
- <species id="M_gua_e_boundary" name="Guanine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C5H5N5O">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H5N5O</p>
- <p>PUBCHEM: 3541</p>
- <p>KEGG: C00242</p>
- <p>CHEBI: 16235</p>
- </html>
- </notes>
- </species>
- <species id="M_h2_e_boundary" name="H2" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="H2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: H2</p>
- <p>PUBCHEM: 3577</p>
- <p>KEGG: C00282</p>
- <p>CHEBI: 18276</p>
- </html>
- </notes>
- </species>
- <species id="M_h2o2_e_boundary" name="Hydrogen-peroxide" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="H2O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: H2O2</p>
- <p>PUBCHEM: 3329</p>
- <p>KEGG: C00027</p>
- <p>CHEBI: 16240</p>
- </html>
- </notes>
- </species>
- <species id="M_h2o_e_boundary" name="H2O" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="H2O">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: H2O</p>
- <p>PUBCHEM: 3303</p>
- <p>KEGG: C00001</p>
- <p>CHEBI: 15377</p>
- </html>
- </notes>
- </species>
- <species id="M_h2s_e_boundary" name="Hydrogen-sulfide" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="H2S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: H2S</p>
- <p>PUBCHEM: 3578</p>
- <p>KEGG: C00283</p>
- <p>CHEBI: 16136</p>
- </html>
- </notes>
- </species>
- <species id="M_h_e_boundary" name="H" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="1" fbc:chemicalFormula="H">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: H</p>
- <p>PUBCHEM: 3380</p>
- <p>KEGG: C00080</p>
- <p>CHEBI: 15378</p>
- </html>
- </notes>
- </species>
- <species id="M_hacolipa_e_boundary" name="hepta-acylated-core-oligosaccharide-lipid-A-E-coli" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-11" fbc:chemicalFormula="C192H333N2O101P4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C192H333N2O101P4</p>
- <p>PUBCHEM: 0</p>
- <p>KEGG: 0</p>
- <p>CHEBI: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_halipa_e_boundary" name="hepta-acylated-KDO-2-lipid-A" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-6" fbc:chemicalFormula="C126H226N2O40P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C126H226N2O40P2</p>
- <p>PUBCHEM: 0</p>
- <p>KEGG: 0</p>
- <p>CHEBI: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_hdca_e_boundary" name="Hexadecanoate-n-C160" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H31O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C16H31O2</p>
- <p>PUBCHEM: 3548</p>
- <p>KEGG: C00249</p>
- <p>CHEBI: 15756</p>
- </html>
- </notes>
- </species>
- <species id="M_hdcea_e_boundary" name="Hexadecenoate-n-C161" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H29O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C16H29O2</p>
- <p>PUBCHEM: 3548</p>
- <p>KEGG: C00249</p>
- <p>CHEBI: 15756</p>
- </html>
- </notes>
- </species>
- <species id="M_hg2_e_boundary" name="Hg2" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="2" fbc:chemicalFormula="Hg">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: Hg</p>
- <p>PUBCHEM: 3970</p>
- <p>KEGG: C00703</p>
- <p>CHEBI: 16793</p>
- </html>
- </notes>
- </species>
- <species id="M_his__L_e_boundary" name="L-Histidine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C6H9N3O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H9N3O2</p>
- <p>PUBCHEM: 3435</p>
- <p>KEGG: C00135</p>
- <p>CHEBI: 15971</p>
- </html>
- </notes>
- </species>
- <species id="M_hom__L_e_boundary" name="L-Homoserine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C4H9NO3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H9NO3</p>
- <p>PUBCHEM: 3561</p>
- <p>KEGG: C00263</p>
- <p>CHEBI: 15699</p>
- </html>
- </notes>
- </species>
- <species id="M_hxa_e_boundary" name="Hexanoate-n-C60" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H11O2</p>
- <p>PUBCHEM: 4740</p>
- <p>KEGG: C01585</p>
- <p>CHEBI: 30776</p>
- </html>
- </notes>
- </species>
- <species id="M_hxan_e_boundary" name="Hypoxanthine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C5H4N4O">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H4N4O</p>
- <p>PUBCHEM: 3560</p>
- <p>KEGG: C00262</p>
- <p>CHEBI: 17368</p>
- </html>
- </notes>
- </species>
- <species id="M_idon__L_e_boundary" name="L-Idonate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O7">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H11O7</p>
- <p>PUBCHEM: 4032</p>
- <p>KEGG: C00770</p>
- <p>CHEBI: 17796</p>
- </html>
- </notes>
- </species>
- <species id="M_ile__L_e_boundary" name="L-Isoleucine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C6H13NO2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H13NO2</p>
- <p>PUBCHEM: 3697</p>
- <p>KEGG: C00407</p>
- <p>CHEBI: 17191</p>
- </html>
- </notes>
- </species>
- <species id="M_imp_e_boundary" name="IMP" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H11N4O8P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H11N4O8P</p>
- <p>PUBCHEM: 3430</p>
- <p>KEGG: C00130</p>
- <p>CHEBI: 17202</p>
- </html>
- </notes>
- </species>
- <species id="M_indole_e_boundary" name="Indole" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C8H7N">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C8H7N</p>
- <p>PUBCHEM: 3747</p>
- <p>KEGG: C00463</p>
- <p>CHEBI: 16881</p>
- </html>
- </notes>
- </species>
- <species id="M_inost_e_boundary" name="myo-Inositol" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C6H12O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H12O6</p>
- <p>PUBCHEM: 3437</p>
- <p>KEGG: C00137</p>
- <p>CHEBI: 17268</p>
- </html>
- </notes>
- </species>
- <species id="M_ins_e_boundary" name="Inosine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C10H12N4O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H12N4O5</p>
- <p>PUBCHEM: 3588</p>
- <p>KEGG: C00294</p>
- <p>CHEBI: 17596</p>
- </html>
- </notes>
- </species>
- <species id="M_isetac_e_boundary" name="Isethionic-acid" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H5O4S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C2H5O4S</p>
- <p>PUBCHEM: 7545</p>
- <p>KEGG: C05123</p>
- <p>CHEBI: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_k_e_boundary" name="potassium" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="1" fbc:chemicalFormula="K">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: K</p>
- <p>PUBCHEM: 3537</p>
- <p>KEGG: C00238</p>
- <p>CHEBI: 29103</p>
- </html>
- </notes>
- </species>
- <species id="M_kdo2lipid4_e_boundary" name="KDO-2-lipid-IV-A" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-6" fbc:chemicalFormula="C84H148N2O37P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C84H148N2O37P2</p>
- <p>PUBCHEM: 8297</p>
- <p>KEGG: C06025</p>
- <p>CHEBI: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_lac__D_e_boundary" name="D-Lactate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H5O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H5O3</p>
- <p>PUBCHEM: 3555</p>
- <p>KEGG: C00256</p>
- <p>CHEBI: 42111</p>
- </html>
- </notes>
- </species>
- <species id="M_lac__L_e_boundary" name="L-Lactate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H5O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H5O3</p>
- <p>PUBCHEM: 3486</p>
- <p>KEGG: C00186</p>
- <p>CHEBI: 422</p>
- </html>
- </notes>
- </species>
- <species id="M_lcts_e_boundary" name="Lactose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C12H22O11">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C12H22O11</p>
- <p>PUBCHEM: 3542</p>
- <p>KEGG: C00243</p>
- <p>CHEBI: 36219</p>
- </html>
- </notes>
- </species>
- <species id="M_leu__L_e_boundary" name="L-Leucine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C6H13NO2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H13NO2</p>
- <p>PUBCHEM: 3423</p>
- <p>KEGG: C00123</p>
- <p>CHEBI: 15603</p>
- </html>
- </notes>
- </species>
- <species id="M_lipa__cold_e_boundary" name="cold-adapted-KDO-2-lipid-A" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-6" fbc:chemicalFormula="C114H202N2O39P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C114H202N2O39P2</p>
- <p>PUBCHEM: 0</p>
- <p>KEGG: 0</p>
- <p>CHEBI: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_lipa_e_boundary" name="KDO-2-lipid-A" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-6" fbc:chemicalFormula="C110H196N2O39P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C110H196N2O39P2</p>
- <p>PUBCHEM: 8298</p>
- <p>KEGG: C06026</p>
- <p>CHEBI: 27963</p>
- </html>
- </notes>
- </species>
- <species id="M_lys__L_e_boundary" name="L-Lysine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H15N2O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H15N2O2</p>
- <p>PUBCHEM: 3349</p>
- <p>KEGG: C00047</p>
- <p>CHEBI: 18019</p>
- </html>
- </notes>
- </species>
- <species id="M_lyx__L_e_boundary" name="L-Lyxose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C5H10O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H10O5</p>
- <p>PUBCHEM: 4676</p>
- <p>KEGG: C01508</p>
- <p>CHEBI: 28480</p>
- </html>
- </notes>
- </species>
- <species id="M_mal__D_e_boundary" name="D-Malate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H4O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H4O5</p>
- <p>PUBCHEM: 3780</p>
- <p>KEGG: C00497</p>
- <p>CHEBI: 30796</p>
- </html>
- </notes>
- </species>
- <species id="M_mal__L_e_boundary" name="L-Malate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H4O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H4O5</p>
- <p>PUBCHEM: 3449</p>
- <p>KEGG: C00149</p>
- <p>CHEBI: 30797</p>
- </html>
- </notes>
- </species>
- <species id="M_malt_e_boundary" name="Maltose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C12H22O11">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C12H22O11</p>
- <p>PUBCHEM: 3508</p>
- <p>KEGG: C00208</p>
- <p>CHEBI: 17306</p>
- </html>
- </notes>
- </species>
- <species id="M_malthx_e_boundary" name="Maltohexaose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C36H62O31">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C36H62O31</p>
- <p>PUBCHEM: 5041</p>
- <p>KEGG: C01936</p>
- <p>CHEBI: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_maltpt_e_boundary" name="Maltopentaose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C30H52O26">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C30H52O26</p>
- <p>PUBCHEM: 124005??3611</p>
- <p>KEGG: 0</p>
- <p>CHEBI: 28057</p>
- </html>
- </notes>
- </species>
- <species id="M_malttr_e_boundary" name="Maltotriose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C18H32O16">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C18H32O16</p>
- <p>PUBCHEM: 4954</p>
- <p>KEGG: C01835</p>
- <p>CHEBI: 27931</p>
- </html>
- </notes>
- </species>
- <species id="M_maltttr_e_boundary" name="Maltotetraose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C24H42O21">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C24H42O21</p>
- <p>PUBCHEM: 5141</p>
- <p>KEGG: C02052</p>
- <p>CHEBI: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_man6p_e_boundary" name="D-Mannose-6-phosphate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H11O9P</p>
- <p>PUBCHEM: 3572</p>
- <p>KEGG: C00275</p>
- <p>CHEBI: 17369</p>
- </html>
- </notes>
- </species>
- <species id="M_man_e_boundary" name="D-Mannose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C6H12O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H12O6</p>
- <p>PUBCHEM: 3459</p>
- <p>KEGG: C00159</p>
- <p>CHEBI: 4208</p>
- </html>
- </notes>
- </species>
- <species id="M_manglyc_e_boundary" name="2-alpha-D-Mannosyl-D-glycerate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H15O9">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H15O9</p>
- <p>PUBCHEM: 13711</p>
- <p>KEGG: C11544</p>
- <p>CHEBI: 15847</p>
- </html>
- </notes>
- </species>
- <species id="M_melib_e_boundary" name="Melibiose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C12H22O11">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C12H22O11</p>
- <p>PUBCHEM: 7769</p>
- <p>KEGG: C05402</p>
- <p>CHEBI: 28053</p>
- </html>
- </notes>
- </species>
- <species id="M_met__D_e_boundary" name="D-Methionine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C5H10NO2S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H10NO2S</p>
- <p>PUBCHEM: 4112</p>
- <p>KEGG: C00855</p>
- <p>CHEBI: 16867</p>
- </html>
- </notes>
- </species>
- <species id="M_met__L_e_boundary" name="L-Methionine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C5H11NO2S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H11NO2S</p>
- <p>PUBCHEM: 3373</p>
- <p>KEGG: C00073</p>
- <p>CHEBI: 16643</p>
- </html>
- </notes>
- </species>
- <species id="M_metsox__R__L_e_boundary" name="L-methionine-R-sulfoxide" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C5H11NO3S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H11NO3S</p>
- <p>PUBCHEM: 847</p>
- <p>KEGG: 0</p>
- <p>CHEBI: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_metsox__S__L_e_boundary" name="L-Methionine-Sulfoxide" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C5H11NO3S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H11NO3S</p>
- <p>PUBCHEM: 5898</p>
- <p>KEGG: C02989</p>
- <p>CHEBI: 17016</p>
- </html>
- </notes>
- </species>
- <species id="M_mg2_e_boundary" name="magnesium" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="2" fbc:chemicalFormula="Mg">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: Mg</p>
- <p>PUBCHEM: 3599</p>
- <p>KEGG: C00305</p>
- <p>CHEBI: 18420</p>
- </html>
- </notes>
- </species>
- <species id="M_minohp_e_boundary" name="myo-Inositol-hexakisphosphate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-12" fbc:chemicalFormula="C6H6O24P6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H6O24P6</p>
- <p>PUBCHEM: 4428</p>
- <p>KEGG: C01204</p>
- <p>CHEBI: 17401</p>
- </html>
- </notes>
- </species>
- <species id="M_mmet_e_boundary" name="S-Methyl-L-methionine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H14NO2S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H14NO2S</p>
- <p>PUBCHEM: 6054</p>
- <p>KEGG: C03172</p>
- <p>CHEBI: 17728</p>
- </html>
- </notes>
- </species>
- <species id="M_mn2_e_boundary" name="Mn2" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="2" fbc:chemicalFormula="Mn">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: Mn</p>
- <p>PUBCHEM: 3336</p>
- <p>KEGG: C00034</p>
- <p>CHEBI: 18291</p>
- </html>
- </notes>
- </species>
- <species id="M_mnl_e_boundary" name="D-Mannitol" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C6H14O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H14O6</p>
- <p>PUBCHEM: 3682</p>
- <p>KEGG: C00392</p>
- <p>CHEBI: 16899</p>
- </html>
- </notes>
- </species>
- <species id="M_mobd_e_boundary" name="Molybdate-MoO4" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: </p>
- <p>PUBCHEM: 8475</p>
- <p>KEGG: C06232</p>
- <p>CHEBI: 36264</p>
- </html>
- </notes>
- </species>
- <species id="M_mso3_e_boundary" name="methanesulfonate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="CH3O3S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: CH3O3S</p>
- <p>PUBCHEM: 49991312</p>
- <p>KEGG: 0</p>
- <p>CHEBI: 25224</p>
- </html>
- </notes>
- </species>
- <species id="M_n2o_e_boundary" name="Nitrous-oxide" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="N2O">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: N2O</p>
- <p>PUBCHEM: 4143</p>
- <p>KEGG: C00887</p>
- <p>CHEBI: 17045</p>
- </html>
- </notes>
- </species>
- <species id="M_na1_e_boundary" name="Sodium" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="1" fbc:chemicalFormula="Na">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: Na</p>
- <p>PUBCHEM: 4541</p>
- <p>KEGG: C01330</p>
- <p>CHEBI: 29101</p>
- </html>
- </notes>
- </species>
- <species id="M_nac_e_boundary" name="Nicotinate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H4NO2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H4NO2</p>
- <p>PUBCHEM: 3552</p>
- <p>KEGG: C00253</p>
- <p>CHEBI: 15940</p>
- </html>
- </notes>
- </species>
- <species id="M_nh4_e_boundary" name="Ammonium" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="1" fbc:chemicalFormula="H4N">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: H4N</p>
- <p>PUBCHEM: 4547</p>
- <p>KEGG: C01342</p>
- <p>CHEBI: 28938</p>
- </html>
- </notes>
- </species>
- <species id="M_ni2_e_boundary" name="nickel" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="2" fbc:chemicalFormula="Ni">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: Ni</p>
- <p>PUBCHEM: 3585</p>
- <p>KEGG: C00291</p>
- <p>CHEBI: 28112</p>
- </html>
- </notes>
- </species>
- <species id="M_nmn_e_boundary" name="NMN" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H14N2O8P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C11H14N2O8P</p>
- <p>PUBCHEM: 3741</p>
- <p>KEGG: C00455</p>
- <p>CHEBI: 16171</p>
- </html>
- </notes>
- </species>
- <species id="M_no2_e_boundary" name="Nitrite" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="NO2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: NO2</p>
- <p>PUBCHEM: 3388</p>
- <p>KEGG: C00088</p>
- <p>CHEBI: 16301</p>
- </html>
- </notes>
- </species>
- <species id="M_no3_e_boundary" name="Nitrate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="NO3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: NO3</p>
- <p>PUBCHEM: 3543</p>
- <p>KEGG: C00244</p>
- <p>CHEBI: 48107</p>
- </html>
- </notes>
- </species>
- <species id="M_no_e_boundary" name="Nitric-oxide" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="NO">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: NO</p>
- <p>PUBCHEM: 3815</p>
- <p>KEGG: C00533</p>
- <p>CHEBI: 16480</p>
- </html>
- </notes>
- </species>
- <species id="M_o2_e_boundary" name="O2" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: O2</p>
- <p>PUBCHEM: 3309</p>
- <p>KEGG: C00007</p>
- <p>CHEBI: 15379</p>
- </html>
- </notes>
- </species>
- <species id="M_o2s_e_boundary" name="Superoxide-anion" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: O2</p>
- <p>PUBCHEM: 3971</p>
- <p>KEGG: C00704</p>
- <p>CHEBI: 18421</p>
- </html>
- </notes>
- </species>
- <species id="M_ocdca_e_boundary" name="octadecanoate-n-C180" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H35O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C18H35O2</p>
- <p>PUBCHEM: 4692</p>
- <p>KEGG: C01530</p>
- <p>CHEBI: 25629</p>
- </html>
- </notes>
- </species>
- <species id="M_ocdcea_e_boundary" name="octadecenoate-n-C181" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H33O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C18H33O2</p>
- <p>PUBCHEM: 3978</p>
- <p>KEGG: 0</p>
- <p>CHEBI: 16196</p>
- </html>
- </notes>
- </species>
- <species id="M_octa_e_boundary" name="octanoate-n-C80" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H15O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C8H15O2</p>
- <p>PUBCHEM: 8658</p>
- <p>KEGG: C06423</p>
- <p>CHEBI: 28837</p>
- </html>
- </notes>
- </species>
- <species id="M_orn_e_boundary" name="Ornithine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="1" fbc:chemicalFormula="C5H13N2O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H13N2O2</p>
- <p>PUBCHEM: 4756</p>
- <p>KEGG: C01602</p>
- <p>CHEBI: 18257</p>
- </html>
- </notes>
- </species>
- <species id="M_orot_e_boundary" name="Orotate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H3N2O4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H3N2O4</p>
- <p>PUBCHEM: 3589</p>
- <p>KEGG: C00295</p>
- <p>CHEBI: 16742</p>
- </html>
- </notes>
- </species>
- <species id="M_oaa_e_boundary" name="Oxaloacetate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H2O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H2O5</p>
- <p>PUBCHEM: 3338</p>
- <p>KEGG: C00036</p>
- <p>CHEBI: 30744</p>
- </html>
- </notes>
- </species>
- <species id="M_pacald_e_boundary" name="Phenylacetaldehyde" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C8H8O">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C8H8O</p>
- <p>PUBCHEM: 3876</p>
- <p>KEGG: C00601</p>
- <p>CHEBI: 16424</p>
- </html>
- </notes>
- </species>
- <species id="M_peamn_e_boundary" name="Phenethylamine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="1" fbc:chemicalFormula="C8H12N">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C8H12N</p>
- <p>PUBCHEM: 7711</p>
- <p>KEGG: C05332</p>
- <p>CHEBI: 18397</p>
- </html>
- </notes>
- </species>
- <species id="M_phe__L_e_boundary" name="L-Phenylalanine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C9H11NO2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H11NO2</p>
- <p>PUBCHEM: 3379</p>
- <p>KEGG: C00079</p>
- <p>CHEBI: 17295</p>
- </html>
- </notes>
- </species>
- <species id="M_pheme_e_boundary" name="Protoheme" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C34H30FeN4O4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C34H30FeN4O4</p>
- <p>PUBCHEM: 3334</p>
- <p>KEGG: C00032</p>
- <p>CHEBI: 17627</p>
- </html>
- </notes>
- </species>
- <species id="M_pi_e_boundary" name="Phosphate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="HO4P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: HO4P</p>
- <p>PUBCHEM: 3311</p>
- <p>KEGG: C00009</p>
- <p>CHEBI: 18367</p>
- </html>
- </notes>
- </species>
- <species id="M_pnto__R_e_boundary" name="R-Pantothenate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H16NO5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H16NO5</p>
- <p>PUBCHEM: 4121</p>
- <p>KEGG: C00864</p>
- <p>CHEBI: 29032 46905 7916</p>
- </html>
- </notes>
- </species>
- <species id="M_ppa_e_boundary" name="Propionate-n-C30" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H5O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H5O2</p>
- <p>PUBCHEM: 3463</p>
- <p>KEGG: C00163</p>
- <p>CHEBI: 30768</p>
- </html>
- </notes>
- </species>
- <species id="M_ppal_e_boundary" name="Propanal" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C3H6O">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H6O</p>
- <p>PUBCHEM: 3762</p>
- <p>KEGG: C00479</p>
- <p>CHEBI: 17153</p>
- </html>
- </notes>
- </species>
- <species id="M_pppn_e_boundary" name="Phenylpropanoate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H9O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H9O2</p>
- <p>PUBCHEM: 7943</p>
- <p>KEGG: C05629</p>
- <p>CHEBI: 28631</p>
- </html>
- </notes>
- </species>
- <species id="M_ppt_e_boundary" name="Phosphonate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="HO3P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: HO3P</p>
- <p>PUBCHEM: 8926</p>
- <p>KEGG: C06701</p>
- <p>CHEBI: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_pro__L_e_boundary" name="L-Proline" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C5H9NO2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H9NO2</p>
- <p>PUBCHEM: 3448</p>
- <p>KEGG: C00148</p>
- <p>CHEBI: 17203</p>
- </html>
- </notes>
- </species>
- <species id="M_progly_e_boundary" name="L-Prolinylglycine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C7H12N2O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C7H12N2O3</p>
- <p>PUBCHEM: 0</p>
- <p>KEGG: 0</p>
- <p>CHEBI: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_psclys_e_boundary" name="psicoselysine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="1" fbc:chemicalFormula="C12H25N2O7">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C12H25N2O7</p>
- <p>PUBCHEM: 0</p>
- <p>KEGG: 0</p>
- <p>CHEBI: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_pser__L_e_boundary" name="O-Phospho-L-serine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H6NO6P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H6NO6P</p>
- <p>PUBCHEM: 4251</p>
- <p>KEGG: C01005</p>
- <p>CHEBI: 15811</p>
- </html>
- </notes>
- </species>
- <species id="M_ptrc_e_boundary" name="Putrescine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="2" fbc:chemicalFormula="C4H14N2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H14N2</p>
- <p>PUBCHEM: 3434</p>
- <p>KEGG: C00134</p>
- <p>CHEBI: 17148</p>
- </html>
- </notes>
- </species>
- <species id="M_pyr_e_boundary" name="Pyruvate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H3O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H3O3</p>
- <p>PUBCHEM: 3324</p>
- <p>KEGG: C00022</p>
- <p>CHEBI: 32816</p>
- </html>
- </notes>
- </species>
- <species id="M_r5p_e_boundary" name="alpha-D-Ribose-5-phosphate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H9O8P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H9O8P</p>
- <p>PUBCHEM: 3417</p>
- <p>KEGG: C00117</p>
- <p>CHEBI: 17797</p>
- </html>
- </notes>
- </species>
- <species id="M_rib__D_e_boundary" name="D-Ribose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C5H10O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H10O5</p>
- <p>PUBCHEM: 3421</p>
- <p>KEGG: C00121</p>
- <p>CHEBI: 47013</p>
- </html>
- </notes>
- </species>
- <species id="M_rmn_e_boundary" name="L-Rhamnose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C6H12O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H12O5</p>
- <p>PUBCHEM: 3790</p>
- <p>KEGG: C00507</p>
- <p>CHEBI: 16055</p>
- </html>
- </notes>
- </species>
- <species id="M_sbt__D_e_boundary" name="D-Sorbitol" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C6H14O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H14O6</p>
- <p>PUBCHEM: 4052</p>
- <p>KEGG: C00794</p>
- <p>CHEBI: 17924</p>
- </html>
- </notes>
- </species>
- <species id="M_ser__D_e_boundary" name="D-Serine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C3H7NO3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H7NO3</p>
- <p>PUBCHEM: 4003</p>
- <p>KEGG: C00740</p>
- <p>CHEBI: 16523</p>
- </html>
- </notes>
- </species>
- <species id="M_ser__L_e_boundary" name="L-Serine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C3H7NO3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H7NO3</p>
- <p>PUBCHEM: 3365</p>
- <p>KEGG: C00065</p>
- <p>CHEBI: 17115</p>
- </html>
- </notes>
- </species>
- <species id="M_skm_e_boundary" name="Shikimate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H9O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C7H9O5</p>
- <p>PUBCHEM: 3776</p>
- <p>KEGG: C00493</p>
- <p>CHEBI: 16119</p>
- </html>
- </notes>
- </species>
- <species id="M_so2_e_boundary" name="sulfur-dioxide" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="O2S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: O2S</p>
- <p>PUBCHEM: 11497</p>
- <p>KEGG: C09306</p>
- <p>CHEBI: 18422</p>
- </html>
- </notes>
- </species>
- <species id="M_so3_e_boundary" name="Sulfite" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="O3S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: O3S</p>
- <p>PUBCHEM: 3394</p>
- <p>KEGG: C00094</p>
- <p>CHEBI: 48854</p>
- </html>
- </notes>
- </species>
- <species id="M_so4_e_boundary" name="Sulfate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="O4S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: O4S</p>
- <p>PUBCHEM: 3359</p>
- <p>KEGG: C00059</p>
- <p>CHEBI: 16189</p>
- </html>
- </notes>
- </species>
- <species id="M_spmd_e_boundary" name="Spermidine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="3" fbc:chemicalFormula="C7H22N3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C7H22N3</p>
- <p>PUBCHEM: 3609</p>
- <p>KEGG: C00315</p>
- <p>CHEBI: 16610</p>
- </html>
- </notes>
- </species>
- <species id="M_succ_e_boundary" name="Succinate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H4O4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H4O4</p>
- <p>PUBCHEM: 3344</p>
- <p>KEGG: C00042</p>
- <p>CHEBI: 15741</p>
- </html>
- </notes>
- </species>
- <species id="M_sucr_e_boundary" name="Sucrose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C12H22O11">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C12H22O11</p>
- <p>PUBCHEM: 3389</p>
- <p>KEGG: C00089</p>
- <p>CHEBI: 17992</p>
- </html>
- </notes>
- </species>
- <species id="M_sulfac_e_boundary" name="sulfoacetate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C2H2O5S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C2H2O5S</p>
- <p>PUBCHEM: 7846991</p>
- <p>KEGG: C14179</p>
- <p>CHEBI: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_tartr__L_e_boundary" name="L-tartrate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H4O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H4O6</p>
- <p>PUBCHEM: 4154</p>
- <p>KEGG: C00898</p>
- <p>CHEBI: 15671 30924</p>
- </html>
- </notes>
- </species>
- <species id="M_taur_e_boundary" name="Taurine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C2H7NO3S">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C2H7NO3S</p>
- <p>PUBCHEM: 3544</p>
- <p>KEGG: C00245</p>
- <p>CHEBI: 15891</p>
- </html>
- </notes>
- </species>
- <species id="M_tcynt_e_boundary" name="Thiocyanate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="CNS">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: CNS</p>
- <p>PUBCHEM: 4888</p>
- <p>KEGG: C01755</p>
- <p>CHEBI: 29200</p>
- </html>
- </notes>
- </species>
- <species id="M_thm_e_boundary" name="Thiamin" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="1" fbc:chemicalFormula="C12H17N4OS">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C12H17N4OS</p>
- <p>PUBCHEM: 3668</p>
- <p>KEGG: C00378</p>
- <p>CHEBI: 18385</p>
- </html>
- </notes>
- </species>
- <species id="M_thr__L_e_boundary" name="L-Threonine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C4H9NO3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H9NO3</p>
- <p>PUBCHEM: 3488</p>
- <p>KEGG: C00188</p>
- <p>CHEBI: 16857</p>
- </html>
- </notes>
- </species>
- <species id="M_thrp_e_boundary" name="L-Threonine-O-3-phosphate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H8NO6P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H8NO6P</p>
- <p>PUBCHEM: 14294</p>
- <p>KEGG: C12147</p>
- <p>CHEBI: 37525</p>
- </html>
- </notes>
- </species>
- <species id="M_thym_e_boundary" name="Thymine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C5H6N2O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H6N2O2</p>
- <p>PUBCHEM: 3478</p>
- <p>KEGG: C00178</p>
- <p>CHEBI: 17821</p>
- </html>
- </notes>
- </species>
- <species id="M_thymd_e_boundary" name="Thymidine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C10H14N2O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H14N2O5</p>
- <p>PUBCHEM: 3514</p>
- <p>KEGG: C00214</p>
- <p>CHEBI: 17748</p>
- </html>
- </notes>
- </species>
- <species id="M_tma_e_boundary" name="trimethylamine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="1" fbc:chemicalFormula="C3H10N">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H10N</p>
- <p>PUBCHEM: 3844</p>
- <p>KEGG: C00565</p>
- <p>CHEBI: 18139</p>
- </html>
- </notes>
- </species>
- <species id="M_tmao_e_boundary" name="Trimethylamine-N-oxide" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C3H9NO">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H9NO</p>
- <p>PUBCHEM: 4338</p>
- <p>KEGG: C01104</p>
- <p>CHEBI: 15724</p>
- </html>
- </notes>
- </species>
- <species id="M_tre_e_boundary" name="Trehalose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C12H22O11">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C12H22O11</p>
- <p>PUBCHEM: 4320</p>
- <p>KEGG: C01083</p>
- <p>CHEBI: 16551</p>
- </html>
- </notes>
- </species>
- <species id="M_trp__L_e_boundary" name="L-Tryptophan" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C11H12N2O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C11H12N2O2</p>
- <p>PUBCHEM: 3378</p>
- <p>KEGG: C00078</p>
- <p>CHEBI: 16828</p>
- </html>
- </notes>
- </species>
- <species id="M_tsul_e_boundary" name="Thiosulfate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="O3S2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: O3S2</p>
- <p>PUBCHEM: 3614</p>
- <p>KEGG: C00320</p>
- <p>CHEBI: 16094</p>
- </html>
- </notes>
- </species>
- <species id="M_ttdca_e_boundary" name="tetradecanoate-n-C140" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H27O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C14H27O2</p>
- <p>PUBCHEM: 8659</p>
- <p>KEGG: C06424</p>
- <p>CHEBI: 28875 30807</p>
- </html>
- </notes>
- </species>
- <species id="M_ttdcea_e_boundary" name="tetradecenoate-n-C141" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H25O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C14H25O2</p>
- <p>PUBCHEM: 0</p>
- <p>KEGG: 0</p>
- <p>CHEBI: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_tungs_e_boundary" name="tungstate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="O4W1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: O4W1</p>
- <p>PUBCHEM: 26697048</p>
- <p>KEGG: 0</p>
- <p>CHEBI: 46502</p>
- </html>
- </notes>
- </species>
- <species id="M_tym_e_boundary" name="Tyramine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="1" fbc:chemicalFormula="C8H12NO">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C8H12NO</p>
- <p>PUBCHEM: 3766</p>
- <p>KEGG: C00483</p>
- <p>CHEBI: 15760</p>
- </html>
- </notes>
- </species>
- <species id="M_tyr__L_e_boundary" name="L-Tyrosine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C9H11NO3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H11NO3</p>
- <p>PUBCHEM: 3382</p>
- <p>KEGG: C00082</p>
- <p>CHEBI: 17895</p>
- </html>
- </notes>
- </species>
- <species id="M_tyrp_e_boundary" name="Phosphotyrosine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H10NO6P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H10NO6P</p>
- <p>PUBCHEM: 8732</p>
- <p>KEGG: C06501</p>
- <p>CHEBI: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_uacgam_e_boundary" name="UDP-N-acetyl-D-glucosamine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C17H25N3O17P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C17H25N3O17P2</p>
- <p>PUBCHEM: 3345</p>
- <p>KEGG: C00043</p>
- <p>CHEBI: 16264</p>
- </html>
- </notes>
- </species>
- <species id="M_udpacgal_e_boundary" name="UDP-N-acetyl-D-galactosamine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C17H25N3O17P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C17H25N3O17P2</p>
- <p>PUBCHEM: 3503</p>
- <p>KEGG: C00203</p>
- <p>CHEBI: 16650</p>
- </html>
- </notes>
- </species>
- <species id="M_udpg_e_boundary" name="UDPglucose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C15H22N2O17P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C15H22N2O17P2</p>
- <p>PUBCHEM: 3331</p>
- <p>KEGG: C00029</p>
- <p>CHEBI: 18066</p>
- </html>
- </notes>
- </species>
- <species id="M_udpgal_e_boundary" name="UDPgalactose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C15H22N2O17P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C15H22N2O17P2</p>
- <p>PUBCHEM: 3354</p>
- <p>KEGG: C00052</p>
- <p>CHEBI: 18307</p>
- </html>
- </notes>
- </species>
- <species id="M_udpglcur_e_boundary" name="UDP-D-glucuronate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-3" fbc:chemicalFormula="C15H19N2O18P2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C15H19N2O18P2</p>
- <p>PUBCHEM: 3467</p>
- <p>KEGG: C00167</p>
- <p>CHEBI: 17200</p>
- </html>
- </notes>
- </species>
- <species id="M_ump_e_boundary" name="UMP" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H11N2O9P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H11N2O9P</p>
- <p>PUBCHEM: 3405</p>
- <p>KEGG: C00105</p>
- <p>CHEBI: 16695</p>
- </html>
- </notes>
- </species>
- <species id="M_ura_e_boundary" name="Uracil" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C4H4N2O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H4N2O2</p>
- <p>PUBCHEM: 3406</p>
- <p>KEGG: C00106</p>
- <p>CHEBI: 17568</p>
- </html>
- </notes>
- </species>
- <species id="M_urea_e_boundary" name="Urea" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="CH4N2O">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: CH4N2O</p>
- <p>PUBCHEM: 3386</p>
- <p>KEGG: C00086</p>
- <p>CHEBI: 16199</p>
- </html>
- </notes>
- </species>
- <species id="M_uri_e_boundary" name="Uridine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C9H12N2O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C9H12N2O6</p>
- <p>PUBCHEM: 3593</p>
- <p>KEGG: C00299</p>
- <p>CHEBI: 16704</p>
- </html>
- </notes>
- </species>
- <species id="M_val__L_e_boundary" name="L-Valine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C5H11NO2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H11NO2</p>
- <p>PUBCHEM: 3483</p>
- <p>KEGG: C00183</p>
- <p>CHEBI: 16414</p>
- </html>
- </notes>
- </species>
- <species id="M_xan_e_boundary" name="Xanthine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C5H4N4O2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H4N4O2</p>
- <p>PUBCHEM: 3675</p>
- <p>KEGG: C00385</p>
- <p>CHEBI: 17712</p>
- </html>
- </notes>
- </species>
- <species id="M_xmp_e_boundary" name="Xanthosine-5-phosphate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H11N4O9P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H11N4O9P</p>
- <p>PUBCHEM: 3925</p>
- <p>KEGG: C00655</p>
- <p>CHEBI: 15652</p>
- </html>
- </notes>
- </species>
- <species id="M_xtsn_e_boundary" name="Xanthosine" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C10H12N4O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C10H12N4O6</p>
- <p>PUBCHEM: 4895</p>
- <p>KEGG: C01762</p>
- <p>CHEBI: 18107</p>
- </html>
- </notes>
- </species>
- <species id="M_xyl__D_e_boundary" name="D-Xylose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C5H10O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H10O5</p>
- <p>PUBCHEM: 3481</p>
- <p>KEGG: C00181</p>
- <p>CHEBI: 15936</p>
- </html>
- </notes>
- </species>
- <species id="M_xylu__L_e_boundary" name="L-Xylulose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C5H10O5">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H10O5</p>
- <p>PUBCHEM: 3606</p>
- <p>KEGG: C00312</p>
- <p>CHEBI: 17399</p>
- </html>
- </notes>
- </species>
- <species id="M_zn2_e_boundary" name="Zinc" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="2" fbc:chemicalFormula="Zn">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: Zn</p>
- <p>PUBCHEM: 3340</p>
- <p>KEGG: C00038</p>
- <p>CHEBI: 29105</p>
- </html>
- </notes>
- </species>
- <species id="M_AEP_e_boundary" name="2-Aminoethylphosphonate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H7N1O3P1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C2H7N1O3P1</p>
- <p>PUBCHEM: 6353</p>
- <p>KEGG: C03557</p>
- <p>CHEBI: 15573</p>
- </html>
- </notes>
- </species>
- <species id="M_4hoxpac_e_boundary" name="4-Hydroxyphenylacetate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H7O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C8H7O3</p>
- <p>PUBCHEM: 3915</p>
- <p>KEGG: C00642</p>
- <p>CHEBI: 18101</p>
- </html>
- </notes>
- </species>
- <species id="M_remnant1_e_boundary" name="residual-atoms-of-reaction-DMBZIDSYN" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C4H2N2O3">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H2N2O3</p>
- <p>PUBCHEM: 0</p>
- <p>KEGG: 0</p>
- <p>CHEBI: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_colipa20Oag_e_boundary" name="O-antigen-x20-core-oligosaccharide-lipid-A" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-11" fbc:chemicalFormula="C656H1103N2O440P4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C656H1103N2O440P4</p>
- <p>PUBCHEM: 0</p>
- <p>KEGG: 0</p>
- <p>CHEBI: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_salchs4_e_boundary" name="Salmochelin-S4" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C42H47N3O25">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C42H47N3O25</p>
- <p>PUBCHEM: 0</p>
- <p>KEGG: 0</p>
- <p>CHEBI: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_salchs4fe_e_boundary" name="Salmochelin-S4-Fe-III" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="3" fbc:chemicalFormula="C42H47FeN3O25">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C42H47FeN3O25</p>
- <p>PUBCHEM: 0</p>
- <p>KEGG: 0</p>
- <p>CHEBI: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_salchsx_e_boundary" name="Salmochelin-SX" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H20N1O11">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C16H20N1O11</p>
- <p>PUBCHEM: 0</p>
- <p>KEGG: 0</p>
- <p>CHEBI: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_tag__D_e_boundary" name="D-Tagatose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C6H12O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H12O6</p>
- <p>PUBCHEM: 4053</p>
- <p>KEGG: C00795</p>
- <p>CHEBI: 4249</p>
- </html>
- </notes>
- </species>
- <species id="M_airs_e_boundary" name="Aminoimidazole-riboside" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C8H13N3O4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C8H13N3O4</p>
- <p>PUBCHEM: 0</p>
- <p>KEGG: phosphorylated version of C03373</p>
- <p>CHEBI: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_pep_e_boundary" name="Phosphoenolpyruvate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-3" fbc:chemicalFormula="C3H2O6P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H2O6P</p>
- <p>PUBCHEM: 3374</p>
- <p>KEGG: C00074</p>
- <p>CHEBI: 18021 44897</p>
- </html>
- </notes>
- </species>
- <species id="M_2pg_e_boundary" name="D-Glycerate-2-phosphate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-3" fbc:chemicalFormula="C3H4O7P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H4O7P</p>
- <p>PUBCHEM: 3904</p>
- <p>KEGG: C00631</p>
- <p>CHEBI: 17835</p>
- </html>
- </notes>
- </species>
- <species id="M_3pg_e_boundary" name="3-Phospho-D-glycerate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-3" fbc:chemicalFormula="C3H4O7P">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C3H4O7P</p>
- <p>PUBCHEM: 3497</p>
- <p>KEGG: C00197</p>
- <p>CHEBI: 17794</p>
- </html>
- </notes>
- </species>
- <species id="M_tet_e_boundary" name="Tetrathionate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="O6S4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: O6S4</p>
- <p>PUBCHEM: 5169</p>
- <p>KEGG: C02084</p>
- <p>CHEBI: 15226 16853</p>
- </html>
- </notes>
- </species>
- <species id="M_foam_e_boundary" name="Formamide" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="CH3NO">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: CH3NO</p>
- <p>PUBCHEM: 3771</p>
- <p>KEGG: C00488</p>
- <p>CHEBI: 16397</p>
- </html>
- </notes>
- </species>
- <species id="M_tartr__D_e_boundary" name="D-tartrate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H4O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C4H4O6</p>
- <p>PUBCHEM: 5189</p>
- <p>KEGG: C02107</p>
- <p>CHEBI: 15672</p>
- </html>
- </notes>
- </species>
- <species id="M_4abz_e_boundary" name="4-Aminobenzoate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H6NO2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C7H6NO2</p>
- <p>PUBCHEM: 3847</p>
- <p>KEGG: C00568</p>
- <p>CHEBI: 30753</p>
- </html>
- </notes>
- </species>
- <species id="M_feroxB_e_boundary" name="Ferrioxamine-B" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="1" fbc:chemicalFormula="C25H48N6O8">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C25H48N6O8</p>
- <p>PUBCHEM: 123851</p>
- <p>KEGG: 0</p>
- <p>CHEBI: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_feroxBfe_e_boundary" name="Ferrioxamine-B-fe" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="1" fbc:chemicalFormula="C25H45FeN6O8">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C25H45FeN6O8</p>
- <p>PUBCHEM: 123851</p>
- <p>KEGG: 0</p>
- <p>CHEBI: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_feroxE_e_boundary" name="Ferrioxamine-E" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C27H48N6O9">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C27H48N6O9</p>
- <p>PUBCHEM: 167864</p>
- <p>KEGG: 0</p>
- <p>CHEBI: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_feroxEfe_e_boundary" name="Ferrioxamine-E-fe" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C27H45FeN6O9">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C27H45FeN6O9</p>
- <p>PUBCHEM: 167864</p>
- <p>KEGG: 0</p>
- <p>CHEBI: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_feroxG_e_boundary" name="Ferrioxamine-G" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C27H49N6O10">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C27H49N6O10</p>
- <p>PUBCHEM: 0</p>
- <p>KEGG: 0</p>
- <p>CHEBI: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_feroxGfe_e_boundary" name="Ferrioxamine-G-fe" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C27H46FeN6O10">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C27H46FeN6O10</p>
- <p>PUBCHEM: 0</p>
- <p>KEGG: 0</p>
- <p>CHEBI: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_drib_e_boundary" name="2-Deoxy-D-ribose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:chemicalFormula="C5H10O4">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C5H10O4</p>
- <p>PUBCHEM: 4927</p>
- <p>KEGG: C01801</p>
- <p>CHEBI: 28816</p>
- </html>
- </notes>
- </species>
- <species id="M_dxyl_e_boundary" name="dxyl_e" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: </p>
- <p>PUBCHEM: 8496</p>
- <p>KEGG: C06257</p>
- <p>CHEBI: 28354</p>
- </html>
- </notes>
- </species>
- <species id="M_salchs2fe_e_boundary" name="salchs2fe_e" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: </p>
- <p>PUBCHEM: NA</p>
- <p>KEGG: NA</p>
- <p>CHEBI: NA</p>
- </html>
- </notes>
- </species>
- <species id="M_rnam_e_boundary" name="rnam_e" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="1">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: </p>
- <p>PUBCHEM: 6038</p>
- <p>KEGG: C03150</p>
- <p>CHEBI: 15927</p>
- </html>
- </notes>
- </species>
- <species id="M_colipaOA_e_boundary" name="colipaOA_e" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: </p>
- <p>PUBCHEM: NA</p>
- <p>KEGG: NA</p>
- <p>CHEBI: NA</p>
- </html>
- </notes>
- </species>
- <species id="M_udcpo4_e_boundary" name="udcpo4_e" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: </p>
- <p>PUBCHEM: 0</p>
- <p>KEGG: 0</p>
- <p>CHEBI: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_tcb_e_boundary" name="tricarballylate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H5O6">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: C6H5O6</p>
- <p>PUBCHEM: 135626273</p>
- <p>KEGG: C19806</p>
- <p>CHEBI: 62517</p>
- </html>
- </notes>
- </species>
- <species id="M_fe3dhbzs3_e_boundary" name="fe3dhbzs3_e" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: </p>
- <p>PUBCHEM: NA</p>
- <p>KEGG: NA</p>
- <p>CHEBI: NA</p>
- </html>
- </notes>
- </species>
- <species id="M_23dhbzs3_e_boundary" name="23dhbzs3_e" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: </p>
- <p>PUBCHEM: NA</p>
- <p>KEGG: NA</p>
- <p>CHEBI: NA</p>
- </html>
- </notes>
- </species>
- <species id="M_guln__L_e_boundary" name="guln__L_e" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: </p>
- <p>PUBCHEM: NA</p>
- <p>KEGG: NA</p>
- <p>CHEBI: NA</p>
- </html>
- </notes>
- </species>
- <species id="M_udcpo5_e_boundary" name="udcpo5_e" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: </p>
- <p>PUBCHEM: 0</p>
- <p>KEGG: 0</p>
- <p>CHEBI: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_4hthr_e_boundary" name="4hthr_e" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: </p>
- <p>PUBCHEM: 8326</p>
- <p>KEGG: C06056</p>
- <p>CHEBI: 0</p>
- </html>
- </notes>
- </species>
- <species id="M_salchs2_e_boundary" name="salchs2_e" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: </p>
- <p>PUBCHEM: NA</p>
- <p>KEGG: NA</p>
- <p>CHEBI: NA</p>
- </html>
- </notes>
- </species>
- <species id="M_tton_e_boundary" name="tton_e" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>FORMULA: </p>
- <p>PUBCHEM: 4976</p>
- <p>KEGG: C01861</p>
- <p>CHEBI: 15987</p>
- </html>
- </notes>
- </species>
- </listOfSpecies>
- <listOfReactions>
- <reaction id="R_12DGR120tipp" name="1 2 diacylglycerol transport via flipping periplasm to cytoplasm n C120 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_12dgr120_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_12dgr120_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_12DGR140tipp" name="1 2 diacylglycerol transport via flipping periplasm to cytoplasm n C140 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_12dgr140_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_12dgr140_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_12DGR141tipp" name="1 2 diacylglycerol transport via flipping periplasm to cytoplasm n C141 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_12dgr141_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_12dgr141_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_12DGR160tipp" name="1 2 diacylglycerol transport via flipping periplasm to cytoplasm n C160 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_12dgr160_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_12dgr160_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_12DGR161tipp" name="1 2 diacylglycerol transport via flipping periplasm to cytoplasm n C161 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_12dgr161_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_12dgr161_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_12DGR180tipp" name="1 2 diacylglycerol transport via flipping periplasm to cytoplasm n C180 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_12dgr180_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_12dgr180_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_12DGR181tipp" name="1 2 diacylglycerol transport via flipping periplasm to cytoplasm n C181 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_12dgr181_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_12dgr181_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_12PPDRtex" name=" R Propane 1 2 diol transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_12ppd__R_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_12ppd__R_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_12PPDRtpp" name=" R Propane 1 2 diol facilitated transport periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2037</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_12ppd__R_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_12ppd__R_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_12PPDStex" name=" S Propane 1 2 diol transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_12ppd__S_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_12ppd__S_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_12PPDStpp" name=" S Propane 1 2 diol facilitated transport periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2037</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_12ppd__S_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_12ppd__S_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_14GLUCANabcpp" name="1 4 alpha D glucan transport via ABC system periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM4229 and STM4228 and STM4227 and STM4230 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_14glucan_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_14glucan_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_14GLUCANtexi" name="1 4 alpha D glucan transport via diffusion extracellular to periplasm irreversible" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4231</p>
- <p>SUBSYSTEM: Transport Outer Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_14glucan_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_14glucan_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_23CAMPtex" name="23cAMP transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_23camp_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_23camp_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_23CCMPtex" name="23cCMP transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_23ccmp_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_23ccmp_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_23CGMPtex" name="23cGMP transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_23cgmp_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_23cgmp_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_23CUMPtex" name="23cUMP transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_23cump_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_23cump_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_23DAPPAt2pp" name="2 3 diaminopropionate transport in via proton symport" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_23dappa_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_23dappa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_23DAPPAtex" name="2 3 diaminopropionate transport via diffusion" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_23dappa_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_23dappa_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_23PDE2pp" name="2 3 cyclic nucleotide phosphodiesterase UMP periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4403</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_23cump_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_3ump_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_23PDE4pp" name="2 3 cyclic nucleotide phosphodiesterase CMP periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4403</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_23ccmp_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_3cmp_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_23PDE7pp" name="2 3 cyclic nucleotide phosphodiesterase AMP periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4403</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_23camp_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_3amp_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_23PDE9pp" name="2 3 cyclic nucleotide phosphodiesterase GMP periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4403</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_23cgmp_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_3gmp_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_26DAHtex" name="meso 2 6 Diaminoheptanedioate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_26dap__M_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_26dap__M_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_2AGPA120tipp" name="2 Acyl sn glycero 3 phosphatidate n C120 transporter via facilitated diffusion periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3009</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_2ddecg3p_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_2ddecg3p_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_2AGPA140tipp" name="2 Acyl sn glycero 3 phosphatidate n C140 transporter via facilitated diffusion periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3009</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_2tdecg3p_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_2tdecg3p_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_2AGPA141tipp" name="2 Acyl sn glycero 3 phosphatidate n C141 transporter via facilitated diffusion periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3009</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_2tdec7eg3p_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_2tdec7eg3p_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_2AGPA160tipp" name="2 Acyl sn glycero 3 phosphatidate n C160 transporter via facilitated diffusion periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3009</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_2hdecg3p_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_2hdecg3p_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_2AGPA161tipp" name="2 Acyl sn glycero 3 phosphatidate n C161 transporter via facilitated diffusion periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3009</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_2hdec9eg3p_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_2hdec9eg3p_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_2AGPA180tipp" name="2 Acyl sn glycero 3 phosphatidate n C180 transporter via facilitated diffusion periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3009</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_2odecg3p_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_2odecg3p_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_2AGPA181tipp" name="2 Acyl sn glycero 3 phosphatidate n C181 transporter via facilitated diffusion periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3009</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_2odec11eg3p_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_2odec11eg3p_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_2AGPE120tipp" name="2 Acyl sn glycero 3 phosphoethanolamine n C120 transporter via facilitated diffusion periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3009</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_2agpe120_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_2agpe120_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_2AGPE140tipp" name="2 Acyl sn glycero 3 phosphoethanolamine n C140 transporter via facilitated diffusion periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3009</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_2agpe140_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_2agpe140_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_2AGPE141tipp" name="2 Acyl sn glycero 3 phosphoethanolamine n C141 transporter via facilitated diffusion periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3009</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_2agpe141_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_2agpe141_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_2AGPE160tipp" name="2 Acyl sn glycero 3 phosphoethanolamine n C160 transporter via facilitated diffusion periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3009</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_2agpe160_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_2agpe160_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_2AGPE161tipp" name="2 Acyl sn glycero 3 phosphoethanolamine n C161 transporter via facilitated diffusion periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3009</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_2agpe161_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_2agpe161_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_2AGPE180tipp" name="2 Acyl sn glycero 3 phosphoethanolamine n C180 transporter via facilitated diffusion periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3009</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_2agpe180_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_2agpe180_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_2AGPE181tipp" name="2 Acyl sn glycero 3 phosphoethanolamine n C181 transporter via facilitated diffusion periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3009</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_2agpe181_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_2agpe181_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_2AGPEAT120" name="2 acyl glycerophospho ethanolamine acyltransferase n C120 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3010</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_2agpe120_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ddca_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pe120_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_2AGPEAT140" name="2 acyl glycerophospho ethanolamine acyltransferase n C140 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3010</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_2agpe140_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ttdca_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pe140_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_2AGPEAT141" name="2 acyl glycerophospho ethanolamine acyltransferase n C141 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3010</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_2agpe141_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ttdcea_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pe141_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_2AGPEAT160" name="2 acyl glycerophospho ethanolamine acyltransferase n C160 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3010</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2agpe160_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_hdca_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pe160_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_2AGPEAT161" name="2 acyl glycerophospho ethanolamine acyltransferase n C161 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3010</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_hdcea_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2agpe161_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pe161_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_2AGPEAT180" name="2 acyl glycerophospho ethanolamine acyltransferase n C180 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3010</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ocdca_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2agpe180_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pe180_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_2AGPEAT181" name="2 acyl glycerophospho ethanolamine acyltransferase n C181 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3010</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2agpe181_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ocdcea_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pe181_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_2AGPG120tipp" name="2 Acyl sn glycero 3 phosphoglycerol n C120 transporter via facilitated diffusion periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3009</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_2agpg120_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_2agpg120_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_2AGPG140tipp" name="2 Acyl sn glycero 3 phosphoglycerol n C140 transporter via facilitated diffusion periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3009</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_2agpg140_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_2agpg140_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_2AGPG141tipp" name="2 Acyl sn glycero 3 phosphoglycerol n C141 transporter via facilitated diffusion periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3009</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_2agpg141_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_2agpg141_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_2AGPG160tipp" name="2 Acyl sn glycero 3 phosphoglycerol n C160 transporter via facilitated diffusion periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3009</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_2agpg160_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_2agpg160_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_2AGPG161tipp" name="2 Acyl sn glycero 3 phosphoglycerol n C161 transporter via facilitated diffusion periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3009</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_2agpg161_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_2agpg161_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_2AGPG180tipp" name="2 Acyl sn glycero 3 phosphoglycerol n C180 transporter via facilitated diffusion periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3009</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_2agpg180_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_2agpg180_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_2AGPG181tipp" name="2 Acyl sn glycero 3 phosphoglycerol n C181 transporter via facilitated diffusion periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3009</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_2agpg181_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_2agpg181_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_2AGPGAT120" name="2 acyl glycerophospho glycerol acyltransferase n C120 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3010</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ddca_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2agpg120_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pg120_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_2AGPGAT140" name="2 acyl glycerophospho glycerol acyltransferase n C140 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3010</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ttdca_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2agpg140_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pg140_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_2AGPGAT141" name="2 acyl glycerophospho glycerol acyltransferase n C141 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3010</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2agpg141_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ttdcea_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pg141_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_2AGPGAT160" name="2 acyl glycerophospho glycerol acyltransferase n C160 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3010</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_hdca_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2agpg160_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pg160_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_2AGPGAT161" name="2 acyl glycerophospho glycerol acyltransferase n C161 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3010</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_hdcea_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2agpg161_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pg161_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_2AGPGAT180" name="2 acyl glycerophospho glycerol acyltransferase n C180 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3010</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ocdca_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2agpg180_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pg180_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_2AGPGAT181" name="2 acyl glycerophospho glycerol acyltransferase n C181 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3010</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2agpg181_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ocdcea_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pg181_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_2DGLCNRx" name="2 dehydro D gluconate reductase NADH " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3646</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_2dhglcn_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glcn_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_2DGLCNRy" name="2 dehydro D gluconate reductase NADPH " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3646</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_2dhglcn_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glcn_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_2DGULRx" name="2 dehydro L gulonate reductase NADH " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3646</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2dhguln_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_idon__L_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_2DGULRy" name="2 dehydro L gulonate reductase NADPH " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3646</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2dhguln_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_idon__L_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_2MAHMP" name="2 Methyl 4 amino 5 hydroxymethylpyrimidine diphosphatase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0457 or STM1235 )</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_2mahmp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_4ampm_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_34dhpactex" name="dihydroxyphenylacetaldehyde transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_34dhpac_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_34dhpac_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_3AMPtex" name="3AMP transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_3amp_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_3amp_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_3CMPtex" name="3CMP transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_3cmp_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_3cmp_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_3GMPtex" name="3GMP transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM1473 or STM2267 or STM0999 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_3gmp_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_3gmp_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_3HAD100" name="3 hydroxyacyl acyl carrier protein dehydratase n C100 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM1067 or STM0227 )</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_3hdecACP_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_tdec2eACP_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_3HAD120" name="3 hydroxyacyl acyl carrier protein dehydratase n C120 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM1067 or STM0227 )</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_3hddecACP_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_tddec2eACP_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_3HAD121" name="3 hydroxyacyl acyl carrier protein dehydratase n C121 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0227 or STM1067 )</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_3hcddec5eACP_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_t3c5ddeceACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_3HAD140" name="3 hydroxyacyl acyl carrier protein dehydratase n C140 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM1067 or STM0227 )</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_3hmrsACP_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_tmrs2eACP_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_3HAD141" name="3 hydroxyacyl acyl carrier protein dehydratase n C141 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM1067 or STM0227 )</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_3hcmrs7eACP_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_t3c7mrseACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_3HAD160" name="3 hydroxyacyl acyl carrier protein dehydratase n C160 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM1067 or STM0227 )</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_3hpalmACP_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_tpalm2eACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_3HAD161" name="3 hydroxyacyl acyl carrier protein dehydratase n C161 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0227 or STM1067 )</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_3hcpalm9eACP_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_t3c9palmeACP_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_3HAD180" name="3 hydroxyacyl acyl carrier protein dehydratase n C180 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM1067 or STM0227 )</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_3hoctaACP_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_toctd2eACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_3HAD181" name="3 hydroxyacyl acyl carrier protein dehydratase n C181 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0227 or STM1067 )</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_3hcvac11eACP_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_t3c11vaceACP_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_3HAD40" name="3 hydroxyacyl acyl carrier protein dehydratase n C40 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM1067 or STM0227 )</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_3haACP_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_but2eACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_3HAD60" name="3 hydroxyacyl acyl carrier protein dehydratase n C60 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM1067 or STM0227 )</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_3hhexACP_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_thex2eACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_3HAD80" name="3 hydroxyacyl acyl carrier protein dehydratase n C80 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM1067 or STM0227 )</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_3hoctACP_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_toct2eACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_3KGK" name="3 keto L gulonate kinase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3674</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_3dhguln_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_3dhgulnp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_3NTD2pp" name="3 nucleotidase UMP periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4403</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_3ump_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_uri_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_3NTD4pp" name="3 nucleotidase CMP periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM4403 or STM2927 )</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_3cmp_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cytd_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_3NTD7pp" name="3 nucleotidase AMP periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM4403 or STM2927 )</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_3amp_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adn_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_3NTD9pp" name="3 nucleotidase GMP periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4403</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_3gmp_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_gsn_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_3OAR100" name="3 oxoacyl acyl carrier protein reductase n C100 " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1195</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_3odecACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_3hdecACP_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_3OAR120" name="3 oxoacyl acyl carrier protein reductase n C120 " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1195</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_3oddecACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_3hddecACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_3OAR121" name="3 oxoacyl acyl carrier protein reductase n C121 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1195</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_3ocddec5eACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_3hcddec5eACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_3OAR140" name="3 oxoacyl acyl carrier protein reductase n C140 " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1195</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_3omrsACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_3hmrsACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_3OAR141" name="3 oxoacyl acyl carrier protein reductase n C141 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1195</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_3ocmrs7eACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_3hcmrs7eACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_3OAR160" name="3 oxoacyl acyl carrier protein reductase n C160 " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1195</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_3opalmACP_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_3hpalmACP_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_3OAR161" name="3 oxoacyl acyl carrier protein reductase n C161 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1195</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_3ocpalm9eACP_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_3hcpalm9eACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_3OAR180" name="3 oxoacyl acyl carrier protein reductase n C180 " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1195</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_3ooctdACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_3hoctaACP_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_3OAR181" name="3 oxoacyl acyl carrier protein reductase n C181 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1195</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_3ocvac11eACP_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_3hcvac11eACP_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_3OAR40" name="3 oxoacyl acyl carrier protein reductase n C40 " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1195</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_actACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_3haACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_3OAR60" name="3 oxoacyl acyl carrier protein reductase n C60 " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1195</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_3ohexACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_3hhexACP_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_3OAR80" name="3 oxoacyl acyl carrier protein reductase n C80 " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1195</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_3ooctACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_3hoctACP_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_3OAS100" name="3 oxoacyl acyl carrier protein synthase n C100 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2378 or STM1197 )</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ocACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_malACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_3odecACP_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_3OAS120" name="3 oxoacyl acyl carrier protein synthase n C120 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2378 or STM1197 )</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_malACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dcaACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_3oddecACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_3OAS121" name="3 oxoacyl acyl carrier protein synthase n C121 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2378</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_cdec3eACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_malACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_3ocddec5eACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_3OAS140" name="3 oxoacyl acyl carrier protein synthase n C140 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2378 or STM1197 )</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ddcaACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_malACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_3omrsACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_3OAS141" name="3 oxoacyl acyl carrier protein synthase n C141 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2378</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_malACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cddec5eACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_3ocmrs7eACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_3OAS160" name="3 oxoacyl acyl carrier protein synthase n C160 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2378 or STM1197 )</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_malACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_myrsACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_3opalmACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_3OAS161" name="3 oxoacyl acyl carrier protein synthase n C161 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2378</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_malACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_tdeACP_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_3ocpalm9eACP_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_3OAS180" name="3 oxoacyl acyl carrier protein synthase n C180 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM1197 or STM2378 )</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_palmACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_malACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_3ooctdACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_3OAS181" name="3 oxoacyl acyl carrier protein synthase n C181 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1197</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_hdeACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_malACP_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_3ocvac11eACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_3OAS60" name="3 oxoacyl acyl carrier protein synthase n C60 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2378 or STM1197 )</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_butACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_malACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_3ohexACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_3OAS80" name="3 oxoacyl acyl carrier protein synthase n C80 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2378 or STM1197 )</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_hexACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_malACP_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_3ooctACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_3PEPTabcpp" name="tripeptide LalaDgluMdap transport via ABC system periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM1679 and STM1745 and STM1744 and STM1743 and STM1742 )</p>
- <p>SUBSYSTEM: Murein Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_LalaDgluMdap_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_LalaDgluMdap_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_3PEPTtex" name="LalaDgluMdap tripeptide transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_LalaDgluMdap_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_LalaDgluMdap_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_3UMPtex" name="3UMP transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_3ump_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_3ump_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_4HOXPACDtex" name="4 hydroxyphenylacetaldehyde transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_4hoxpacd_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_4hoxpacd_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_4PCP" name="tetrapeptide L D carboxypeptidase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1800</p>
- <p>SUBSYSTEM: Murein Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_LalaDgluMdapDala_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_LalaDgluMdap_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ala__D_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_4PCPpp" name="tetrapeptide L D carboxypeptidase periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Murein Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_LalaDgluMdapDala_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_LalaDgluMdap_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ala__D_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_4PEPTabcpp" name="tetrapeptide LalaDgluMdapDala transport via ABC system periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM1746.S and STM1745 and STM1744 and STM1743 and STM1742 )</p>
- <p>SUBSYSTEM: Murein Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_LalaDgluMdapDala_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_LalaDgluMdapDala_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_4PEPTtex" name="LalaDgluMdapDala pentapeptide transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_LalaDgluMdapDala_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_LalaDgluMdapDala_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_5DGLCNR" name="5 dehydro D gluconate reductase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4483</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_5dglcn_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glcn_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_5DGLCNt2rpp" name="5 Dehydro D gluconate transport via proton symport reversible periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4482</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_5dglcn_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_5dglcn_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_5DGLCNtex" name="5 Dehydro D gluconate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM1473 or STM0999 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_5dglcn_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_5dglcn_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_5DOAN" name="5 deoxyadenosine nuclosidase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0207</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dad__5_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ade_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_5drib_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_A5PISO" name="arabinose 5 phosphate isomerase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2838.S or STM3315 )</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ru5p__D_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ara5p_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_AACPS1" name="acyl acyl carrier protein synthetase n C140 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3010 and STM1196 )</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ttdca_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_myrsACP_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_AACPS2" name="acyl acyl carrier protein synthetase n C141 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3010 and STM1196 )</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ttdcea_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_tdeACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_AACPS3" name="acyl acyl carrier protein synthetase n C160 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3010 and STM1196 )</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_hdca_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_palmACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_AACPS4" name="acyl acyl carrier protein synthetase n C161 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3010 and STM1196 )</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_hdcea_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_hdeACP_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_AACPS5" name="acyl acyl carrier protein synthetase n C181 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3010 and STM1196 )</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ocdcea_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_octeACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_AACPS6" name="acyl acyl carrier protein synthetase n C180 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3010 and STM1196 )</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ocdca_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ocdcaACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_AACPS7" name="acyl acyl carrier protein synthetase n C120 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3010 and STM1196 )</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ddca_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ddcaACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_AACPS8" name="acyl acyl carrier protein synthetase n C100 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3010 and STM1196 )</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dca_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dcaACP_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_AACPS9" name="acyl acyl carrier protein synthetase n C80 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3010 and STM1196 )</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_octa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ocACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_AACTOOR" name="Aminoacetoneoxygen oxidoreductase deaminating flavin containing " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Methylglyoxal Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_aact_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_o2_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h2o2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_mthgxl_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nh4_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_AAMYL" name="alpha amylase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1963</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_14glucan_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_malthx_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_AAMYLpp" name="alpha amylase periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3664</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_14glucan_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_malthx_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ABTA" name="4 aminobutyrate transaminase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2792</p>
- <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_4abut_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_akg_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_sucsal_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ABUTD" name="Aminobutyraldehyde dehydrogenase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1597</p>
- <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_4abutn_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_4abut_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ABUTt2pp" name="4 aminobutyrate transport in via proton symport periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2793</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_4abut_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_4abut_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ABUTtex" name="4 aminobutyrate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_4abut_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_4abut_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ACACtex" name="acetoacetate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_acac_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_acac_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ACALD" name="acetaldehyde dehydrogenase acetylating " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM1749 or STM2463 )</p>
- <p>SUBSYSTEM: Pyruvate Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_acald_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_accoa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ACALDtex" name="acetaldehyde transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_acald_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_acald_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ACALDtpp" name="acetaldehyde reversible transport periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: s0001</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_acald_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_acald_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ACBIPGT" name="Adenosyl cobinamide phosphate guanyltransferase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2018</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_gtp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adocbip_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_agdpcbi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ACCOAC" name="acetyl CoA carboxylase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0232 and STM2366 and STM3379 and STM3380 )</p>
- <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_accoa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_hco3_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_malcoa_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ACCOAL" name="acetate CoA ligase ADP forming " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0371 or STM4275 )</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppa_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppcoa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ACGAL1PPpp" name="N acetyl D galactosamine 1 phosphatase periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_acgal1p_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_acgal_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ACGAL1Ptex" name="N acetyl D galactosamine 1 phosphate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_acgal1p_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_acgal1p_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ACGALtex" name="N acetyl D galactosamine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_acgal_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_acgal_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ACGAM1PPpp" name="N acetyl D glucosamine 1 phosphatase periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_acgam1p_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_acgam_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ACGAM1Ptex" name="N acetyl D glucosamine 1 phosphate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_acgam1p_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_acgam1p_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ACGAMK" name="N acetylglucosamine kinase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1220</p>
- <p>SUBSYSTEM: Murein Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_acgam_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_acgam6p_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ACGAMT" name="UDP N acetylglucosamineundecaprenylphosphate N acetylglucosamine 1 phosphate transferase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3918</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_udcpp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_uacgam_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ump_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_unaga_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ACGAptspp" name="N Acetyl D glucosamine transport via PEPPyr PTS periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( ( STM2433 and STM1203 and STM2431 and STM2432 ) or ( STM0685 and STM2431 and STM2432 ) )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_acgam_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pep_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_acgam6p_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ACGAtex" name="N Acetyl D glucosamine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_acgam_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_acgam_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ACGK" name="acetylglutamate kinase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4122</p>
- <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_acglu_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_acg5p_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ACGS" name="N acetylglutamate synthase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2992</p>
- <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_accoa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_acglu_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ACHBS" name="2 aceto 2 hydroxybutanoate synthase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3795 and STM3796 ) or ( STM3901 and STM3902 )</p>
- <p>SUBSYSTEM: Valine Leucine and Isoleucine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2obut_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_2ahbut_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ACKr" name="acetate kinase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3242 or STM2337 or STM1883 )</p>
- <p>SUBSYSTEM: Pyruvate Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ac_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_actp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ACLS" name="acetolactate synthase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3795 and STM3796 ) or ( STM3901 and STM3902 )</p>
- <p>SUBSYSTEM: Valine Leucine and Isoleucine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pyr_c" stoichiometry="2" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_alac__S_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ACM6PH" name="N acetylmuramate 6 phosphate hydrolase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_acmum6p_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_acgam6p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_lac__D_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ACMAMUT" name="UDP N acetyl D mannosaminuronic acid transferase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3929</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_unaga_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_uacmamu_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_udp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_unagamu_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ACMANAptspp" name="N acetyl D mannosamine transport via PTS periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM1830 and STM1831 and STM1832 and STM2431 and STM2432 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_acmana_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pep_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_acmanap_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ACMANAtex" name="N acetyl D mannosamine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2267 or STM0320 or STM0999 or STM1473 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_acmana_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_acmana_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ACMUMtex" name="N acetylmuramate transport via diffusion extracellular to periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_acmum_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_acmum_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ACNAMt2pp" name="N acetylneuraminate proton symport periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3338</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_acnam_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_acnam_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ACNAMtex" name="N acetylneuraminate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0999 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_acnam_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_acnam_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ACNML" name="N Acetylneuraminate lyase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3339</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_acnam_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_acmana_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ACOAD1f" name="acyl CoA dehydrogenase butanoyl CoA " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0309</p>
- <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_btcoa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fad_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_fadh2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_b2coa_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ACOAD2f" name="acyl CoA dehydrogenase hexanoyl CoA " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0309</p>
- <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_hxcoa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fad_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_fadh2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_hx2coa_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ACOAD3f" name="acyl CoA dehydrogenase octanoyl CoA " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0309</p>
- <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_fad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_occoa_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_fadh2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_oc2coa_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ACOAD4f" name="acyl CoA dehydrogenase decanoyl CoA " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0309</p>
- <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_dcacoa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fad_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_fadh2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dc2coa_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ACOAD5f" name="acyl CoA dehydrogenase dodecanoyl CoA " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0309</p>
- <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ddcacoa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fad_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_fadh2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dd2coa_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ACOAD6f" name="acyl CoA dehydrogenase tetradecanoyl CoA " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0309</p>
- <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_fad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_tdcoa_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_fadh2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_td2coa_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ACOAD7f" name="acyl CoA dehydrogenase hexadecanoyl CoA " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0309</p>
- <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pmtcoa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fad_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_fadh2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_hdd2coa_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ACOAD8f" name="acyl CoA dehydrogenase octadecanoyl CoA " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0309</p>
- <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_stcoa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fad_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_od2coa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fadh2_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ACOATA" name="Acetyl CoA ACP transacylase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM1196 and STM1193 )</p>
- <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_accoa_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_acACP_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ACODA" name="acetylornithine deacetylase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4120</p>
- <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_acorn_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ac_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_orn_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ACOLIPAtex" name="arabinose modified core oligosaccharide lipid A transport via vector periplasm to extracellular " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_acolipa_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_acolipa_e" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ACONIs" name="aconitate isomerase spontaneous " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: s0001</p>
- <p>SUBSYSTEM: Unassigned</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_acon__T_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_acon__C_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ACONTa" name="aconitase half reaction A Citrate hydro lyase " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0158 or STM1712 )</p>
- <p>SUBSYSTEM: Citric Acid Cycle</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_cit_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_acon__C_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ACONTb" name="aconitase half reaction B Isocitrate hydro lyase " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0158 or STM1712 )</p>
- <p>SUBSYSTEM: Citric Acid Cycle</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_acon__C_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_icit_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ACOTA" name="acetylornithine transaminase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3468 or STM1303 )</p>
- <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_acorn_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_akg_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_acg5sa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ACPS1" name="acyl carrier protein synthase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2577 or STM3583 )</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_apoACP_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pap_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ACS" name="acetyl CoA synthetase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4275</p>
- <p>SUBSYSTEM: Pyruvate Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ac_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_accoa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ACSERtex" name="O Acetyl L serine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_acser_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_acser_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ACSERtpp" name="O Acetyl L serine export via facilitated transport" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2645 or STM1517 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_acser_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_acser_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ACt2rpp" name="acetate reversible transport via proton symport periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ac_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ac_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ACt4pp" name="NaAcetate symport periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4273</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_na1_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ac_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ac_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_na1_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ACtex" name="Acetate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ac_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ac_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ADA" name="Adenosine deaminase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1463</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adn_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ins_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nh4_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ADCL" name="4 aminobenzoate synthase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1198</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_4adcho_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_4abz_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ADCS" name="4 amino 4 deoxychorismate synthase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3469 and STM1824 )</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_chor_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gln__L_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_4adcho_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ADEt2rpp" name="adenine transport via proton symport reversible periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3747</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ade_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ade_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ADEtex" name="adenine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ade_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ade_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ADK1" name="adenylate kinase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0488</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ADK3" name="adentylate kinase GTP " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0488</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gtp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gdp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ADK4" name="adentylate kinase ITP " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0488</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_itp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_idp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ADMDC" name="adenosylmethionine decarboxylase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0165</p>
- <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_amet_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ametam_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ADNCYC" name="adenylate cyclase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3939</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_camp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ADNK1" name="adenosine kinase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0488</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adn_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ADNUC" name="adenosine hydrolase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0051</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adn_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ade_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_rib__D_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ADNt2pp" name="adenosine transport in via proton symport periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3113 or STM2409 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_adn_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adn_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ADNt2rpp" name="adenosine transport in via proton symport reversible periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2421</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adn_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adn_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ADNtex" name="adenosine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0413</p>
- <p>SUBSYSTEM: Transport Outer Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_adn_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adn_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ADOCBLabcpp" name="Adenosylcobalamin transport via ABC system periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM1340 and STM1342 and STM0206 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adocbl_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adocbl_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ADOCBLtonex" name="Adenosylcobalimin transport via ton system extermal " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM4130 and ( STM1737 and STM3158 and STM3159 ) )</p>
- <p>SUBSYSTEM: Transport Outer Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_adocbl_e" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adocbl_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ADPRDP" name="ADPribose diphosphatase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3185</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adprib_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_r5p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ADPT" name="adenine phosphoribosyltransferase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0483</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ade_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_prpp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ADSK" name="adenylyl sulfate kinase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2933</p>
- <p>SUBSYSTEM: Cysteine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_aps_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_paps_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ADSL1r" name="adenylsuccinate lyase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1232</p>
- <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_dcamp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fum_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ADSL2r" name="adenylosuccinate lyase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1232</p>
- <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_25aics_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_aicar_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fum_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ADSS" name="adenylosuccinate synthase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4366</p>
- <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_gtp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_asp__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_imp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_dcamp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_gdp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_AGDC" name="N acetylglucosamine 6 phosphate deacetylase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0683</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_acgam6p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ac_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gam6p_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_AGM3PA" name="N Acetyl D glucosamine anhydrous N Acetylmuramyl tripeptide amidase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0146</p>
- <p>SUBSYSTEM: Murein Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_anhgm3p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_LalaDgluMdap_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_anhgm_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_AGM3PApp" name="N Acetyl D glucosamine anhydrous N Acetylmuramyl tripeptide amidase periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM4358 or STM2450 or STM2991 )</p>
- <p>SUBSYSTEM: Murein Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_anhgm3p_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_LalaDgluMdap_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_anhgm_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_AGM3PH" name="N Acetyl D glucosamine anhydrous N Acetylmuramyl tripeptide beta 1 4 N acetylglucosaminidase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1209</p>
- <p>SUBSYSTEM: Murein Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_anhgm3p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_acgam_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_anhm3p_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_AGM3Pt2pp" name="GlcNAc anhMurNAc tripeptide transport in via proton symport periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0444</p>
- <p>SUBSYSTEM: Murein Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_anhgm3p_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_anhgm3p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_AGM4PA" name="N Acetyl D glucosamine anhydrous N Acetylmuramyl tetrapeptide amidase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0146</p>
- <p>SUBSYSTEM: Murein Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_anhgm4p_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_anhgm_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_LalaDgluMdapDala_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_AGM4PApp" name="N Acetyl D glucosamine anhydrous N Acetylmuramyl tetrapeptide amidase periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2991 or STM4358 or STM2450 )</p>
- <p>SUBSYSTEM: Murein Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_anhgm4p_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_anhgm_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_LalaDgluMdapDala_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_AGM4PCP" name="N Acetyl D glucosamine anhydrous N Acetylmuramyl tetrapeptide L D carboxypeptidase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1800</p>
- <p>SUBSYSTEM: Murein Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_anhgm4p_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_anhgm3p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ala__D_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_AGM4PCPpp" name="N Acetyl D glucosamine anhydrous N Acetylmuramyl tetrapeptide L D carboxypeptidase periplasmic " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Murein Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_anhgm4p_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ala__D_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_anhgm3p_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_AGM4PH" name="N Acetyl D glucosamine anhydrous N Acetylmuramyl tetrapeptide beta 1 4 N acetylglucosaminidase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1209</p>
- <p>SUBSYSTEM: Murein Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_anhgm4p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_acgam_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_anhm4p_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_AGM4Pt2pp" name="GlcNAc anhMurNAc tetrapeptide transport in via proton symport periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0444</p>
- <p>SUBSYSTEM: Murein Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_anhgm4p_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_anhgm4p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_AGMH" name="N Acetyl D glucosamine anhydrous N Acetylmuramyl beta 1 4 N acetylglucosaminidase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1209</p>
- <p>SUBSYSTEM: Murein Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_anhgm_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_acgam_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_anhm_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_AGMHE" name="ADP D glycero D manno heptose epimerase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3710</p>
- <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_adphep__DD_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adphep__LD_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_AGMT" name="agmatinase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3078</p>
- <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_agm_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ptrc_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_urea_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_AGMt2pp" name="GlcNAc anhMurNAc transport in via proton symport periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0444</p>
- <p>SUBSYSTEM: Murein Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_anhgm_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_anhgm_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_AGMtex" name="agmatine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_agm_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_agm_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_AGPAT120" name="1 tetradecanoyl sn glycerol 3 phosphate O acyltransferase n C120 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3173</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_1ddecg3p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ddcaACP_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pa120_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_AGPAT140" name="1 tetradecanoyl sn glycerol 3 phosphate O acyltransferase n C140 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3173</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_1tdecg3p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_myrsACP_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pa140_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_AGPAT141" name="1 tetradec 7 enoyl sn glycerol 3 phosphate O acyltransferase n C141 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3173</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_tdeACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_1tdec7eg3p_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pa141_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_AGPAT160" name="1 hexadecanoyl sn glycerol 3 phosphate O acyltransferase n C160 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3173</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_palmACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_1hdecg3p_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pa160_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_AGPAT161" name="1 hexadec 7 enoyl sn glycerol 3 phosphate O acyltransferase n C161 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3173</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_1hdec9eg3p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_hdeACP_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pa161_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_AGPAT180" name="1 octadecanoyl sn glycerol 3 phosphate O acyltransferase n C180 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3173</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ocdcaACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_1odecg3p_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pa180_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_AGPAT181" name="1 octadec 7 enoyl sn glycerol 3 phosphate O acyltransferase n C181 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3173</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_octeACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_1odec11eg3p_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pa181_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_AGPR" name="N acetyl g glutamyl phosphate reductase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4121</p>
- <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_acg5sa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_acg5p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_AHCYSNS" name="S adenosylhomocysteine nucleosidase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0207</p>
- <p>SUBSYSTEM: Methionine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ahcys_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ade_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_rhcys_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_AICART" name="phosphoribosylaminoimidazolecarboxamide formyltransferase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4176</p>
- <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_10fthf_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_aicar_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_thf_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fprica_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_AIRC2" name="phosphoribosylaminoimidazole carboxylase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0533</p>
- <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_hco3_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_air_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_5caiz_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_AIRC3" name="phosphoribosylaminoimidazole carboxylase mutase rxn " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0534</p>
- <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_5aizc_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_5caiz_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_AKGDH" name="2 Oxogluterate dehydrogenase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0154 and STM0736 and STM0737 )</p>
- <p>SUBSYSTEM: Citric Acid Cycle</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_akg_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_succoa_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_AKGt2rpp" name="2 oxoglutarate reversible transport via symport periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2654</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_akg_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_akg_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_AKGtex" name="alpha ketoglutarate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_akg_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_akg_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ALAALAabcpp" name="D alanyl D alanine DalaDala transport via ABC system periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3630 and STM3629 and STM3628 and STM3627 and STM3626 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_alaala_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_alaala_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ALAALAr" name="D alanine D alanine ligase reversible " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0380 or STM0130 )</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ala__D_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_alaala_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ALAALAtex" name="D alanyl D alanine DalaDala transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_alaala_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_alaala_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ALAGLUE" name="L alanyl gamma glutamate epimerase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1681</p>
- <p>SUBSYSTEM: Murein Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_LalaDglu_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_LalaLglu_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ALAR" name="alanine racemase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM4247 or STM1802 )</p>
- <p>SUBSYSTEM: Alanine and Aspartate Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ala__L_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ala__D_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ALATA_D2" name="D alanine transaminase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2555 or STM0934 )</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ala__D_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pydx5p_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pyam5p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ALATA_L" name="L alanine transaminase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Alanine and Aspartate Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_akg_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ala__L_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ALATA_L2" name="alanine transaminase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0934 or STM2555 )</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pydx5p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ala__L_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pyam5p_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ALATRS" name="Alanyl tRNA synthetase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2827</p>
- <p>SUBSYSTEM: tRNA Charging</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ala__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_trnaala_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_alatrna_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ALAabcpp" name="L alanine transport via ABC system periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3560 and STM3561 and STM3563 and STM3567 and STM3562 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ala__L_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ala__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ALAt2pp" name="L alanine transport in via proton symport periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4398</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ala__L_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ala__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ALAt4pp" name="L alanine transport in via sodium symport periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0006</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_na1_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ala__L_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_na1_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ala__L_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ALAtex" name="L alanine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ala__L_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ala__L_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ALDD2y" name="aldehyde dehydrogenase acetaldehyde NADP " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3680</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_acald_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ac_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ALDD3y" name="aldehyde dehydrogenase propanal NADP " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3680</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppal_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ALLTAMH" name="allantoate amidohydrolase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0527</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_alltt_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_urdglyc_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nh4_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ALLTN" name="allantoinase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0523</p>
- <p>SUBSYSTEM: Nitrogen Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_alltn_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_alltt_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ALLTNt2rpp" name="allantoin transport in via proton symport periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0522</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_alltn_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_alltn_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ALLTNtex" name="allantoin transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_alltn_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_alltn_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ALLtex" name="Allose transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_all__D_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_all__D_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ALR2" name="aldose reductase methylglyoxal " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3165 or STM0255 or STM1288 )</p>
- <p>SUBSYSTEM: Methylglyoxal Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_mthgxl_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_acetol_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ALR4x" name="aldose reductase acetol " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4108</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_acetol_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_12ppd__R_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_AM3PA" name="anhydrous N Acetylmuramyl tripeptide amidase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0146</p>
- <p>SUBSYSTEM: Murein Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_anhm3p_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_LalaDgluMdap_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_anhm_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_AM4PA" name="anhydrous N Acetylmuramyl tetrapeptide amidase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0146</p>
- <p>SUBSYSTEM: Murein Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_anhm4p_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_anhm_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_LalaDgluMdapDala_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_AM4PCP" name="anhydrous N Acetylmuramyl tetrapeptide L D carboxypeptidase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1800</p>
- <p>SUBSYSTEM: Murein Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_anhm4p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ala__D_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_anhm3p_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_AMALT1" name="Amylomaltase maltotriose " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3513</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_malttr_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_malt_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glc__D_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_maltttr_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_AMALT2" name="Amylomaltase maltotetraose " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3513</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_malt_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_maltttr_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_maltpt_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glc__D_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_AMALT3" name="Amylomaltase maltopentaose " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3513</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_malt_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_maltpt_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_malthx_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glc__D_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_AMALT4" name="Amylomaltase maltohexaose " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3513</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_malt_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_malthx_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glc__D_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_malthp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_AMANAPEr" name="N acetylmannosamine 6 phosphate epimerase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3337</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_acmanap_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_acgam6p_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_AMANK" name="N acetyl D mannosamine kinase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3336</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_acmana_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_acmanap_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_AMAOTr" name="adenosylmethionine 8 amino 7 oxononanoate transaminase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0793</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_8aonn_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_amet_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_dann_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_amob_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_AMMQLT8" name="S adenosylmethione2 demthylmenaquinole methyltransferase menaquinone 8 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3970</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_2dmmql8_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_amet_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ahcys_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_mql8_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_AMPMS2" name="4 amino 2 methyl 5 phosphomethylpyrimidine synthetase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4164</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_air_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_4ampm_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="3" constant="true"/>
- <speciesReference species="M_for_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_AMPN" name="AMP nucleosidase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2009</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ade_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_r5p_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_AMPTASECG" name="alanyl aminopeptidase cys gly " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM1057 or STM0316 or STM4477 or STM2536 )</p>
- <p>SUBSYSTEM: Cysteine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_cgly_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_gly_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cys__L_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_AMPTASEPG" name="aminopeptidase pro gly " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2536 or STM4477 or STM0316 or STM1057 )</p>
- <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_progly_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pro__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gly_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_AMPtex" name="AMP transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0999 or STM1473 or STM2267 or STM0320 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_amp_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_amp_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ANHGMtex" name="GlcNAc anhMurNAc transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_anhgm_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_anhgm_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ANHMK" name="1 6 anhydrous N Acetylmuramate kinase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1446</p>
- <p>SUBSYSTEM: Murein Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_anhm_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_acmum6p_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ANPRT" name="anthranilate phosphoribosyltransferase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1724</p>
- <p>SUBSYSTEM: Tyrosine Tryptophan and Phenylalanine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_prpp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_anth_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pran_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ANS" name="anthranilate synthase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM1724 and STM1723 )</p>
- <p>SUBSYSTEM: Tyrosine Tryptophan and Phenylalanine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_gln__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_chor_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_anth_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_AOBUTDs" name="L 2 amino 3 oxobutanoate decarboxylation spontaneous " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: s0001</p>
- <p>SUBSYSTEM: Threonine and Lysine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_2aobut_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_aact_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_AOXSr" name="8 amino 7 oxononanoate synthase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0795</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ala__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pmcoa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_8aonn_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_AP4AH" name="Ap4A hydrolase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0088</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ap4a_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_AP5AH" name="Ap5A hydrolase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0088</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ap5a_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_APRAUR" name="5 amino 6 5 phosphoribosylamino uracil reductase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0416</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_5apru_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_5aprbu_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ARAI" name="L arabinose isomerase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0102</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_arab__L_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_rbl__L_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ARBTNR1" name="aerobactin reductase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_arbtn__fe3_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_fadh2_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_fe2_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_arbtn_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_fad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ARBTNR2" name="aerobactin reductase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_arbtn__fe3_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_fmnh2_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_fmn_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fe2_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_arbtn_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ARBTNR3" name="aerobactin reductase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_arbtn__fe3_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_rbflvrd_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ribflv_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_arbtn_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_fe2_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ARBTNabcpp" name="aerobactin transport via ABC system periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0194 and STM0192 and STM0193 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_arbtn__fe3_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_arbtn__fe3_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ARBTNexs" name="aerobactin Fe loading reaction spontaneous " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: s0001</p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_fe3_e" stoichiometry="1" constant="true"/>
- <speciesReference species="M_arbtn_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_arbtn__fe3_e" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ARBTNtex" name="aerobactin secretion to extracellular " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Transport Outer Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_arbtn_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_arbtn_e" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ARBTNtonex" name="aerobactin transport via ton system extracellular " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Transport Outer Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_arbtn__fe3_e" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_arbtn__fe3_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ARBTNtpp" name="aerobactin secretion to periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_arbtn_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_arbtn_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ARBt2rpp" name="L arabinose transport via proton symport periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3016</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_arab__L_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_arab__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ARBt3ipp" name="L arabinose transport via proton antiport periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1522</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_arab__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_arab__L_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ARBtex" name="L arabinose transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_arab__L_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_arab__L_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ARGAGMt7pp" name="Arginineagmatine antiport periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4294</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_arg__L_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_agm_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_arg__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_agm_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ARGDC" name="arginine decarboxylase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM4296 or STM3086 )</p>
- <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_arg__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_agm_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ARGDCpp" name="arginine decarboxylase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3086</p>
- <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_arg__L_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_co2_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_agm_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ARGORNt7pp" name="arginineornithine antiporter periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1477</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_arg__L_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_orn_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_arg__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_orn_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ARGSL" name="argininosuccinate lyase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4123</p>
- <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_argsuc_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_arg__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fum_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ARGSS" name="argininosuccinate synthase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3290.S</p>
- <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_citr__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_asp__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_argsuc_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ARGTRS" name="Arginyl tRNA synthetase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1909</p>
- <p>SUBSYSTEM: tRNA Charging</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_trnaarg_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_arg__L_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_argtrna_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ARGabcpp" name="L arginine transport via ABC system periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( ( STM2355 and STM2352 and STM2351 and STM2353 ) or ( STM0890 and STM0887 and STM0888 and STM0891 and STM0889 ) )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_arg__L_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_arg__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ARGt3pp" name="L arginine transport out via proton antiport cytoplasm to periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3066</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_arg__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_arg__L_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ARGtex" name="L arginine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_arg__L_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_arg__L_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ASAD" name="aspartate semialdehyde dehydrogenase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3539</p>
- <p>SUBSYSTEM: Threonine and Lysine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_aspsa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_4pasp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ASCBPL" name="L ascorbate 6 phosphate lactonase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4382</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ascb6p_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_3dhgulnp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ASCBptspp" name="L ascorbate transport via PEPPyr PTS periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2431 and STM2432 and STM4385 and STM4384 and STM4383.S )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pep_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ascb__L_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ascb6p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ASCBtex" name="L ascorbate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ascb__L_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ascb__L_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ASNN" name="L asparaginase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM1294 or STM0847 or STM3598 )</p>
- <p>SUBSYSTEM: Alanine and Aspartate Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_asn__L_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nh4_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_asp__L_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ASNNpp" name="L asparaginase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3106</p>
- <p>SUBSYSTEM: Alanine and Aspartate Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_asn__L_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nh4_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_asp__L_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ASNS1" name="asparagine synthase glutamine hydrolysing " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0680</p>
- <p>SUBSYSTEM: Alanine and Aspartate Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_gln__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_asp__L_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_asn__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ASNS2" name="asparagine synthetase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3877</p>
- <p>SUBSYSTEM: Alanine and Aspartate Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_asp__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nh4_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_asn__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ASNTRS" name="Asparaginyl tRNA synthetase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1000</p>
- <p>SUBSYSTEM: tRNA Charging</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_trnaasn_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_asn__L_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_asntrna_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ASNabcpp" name="L asparagine transport via ABC system periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_asn__L_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_asn__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ASNt2rpp" name="L asparagine reversible transport via proton symport periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1584</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_asn__L_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_asn__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ASNtex" name="L asparagine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_asn__L_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_asn__L_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ASO3tex" name="arsenite transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_aso3_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_aso3_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ASP1DC" name="aspartate 1 decarboxylase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0180</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_asp__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ala__B_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ASPCT" name="aspartate carbamoyltransferase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM4459 and STM4460 )</p>
- <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_cbp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_asp__L_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cbasp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ASPK" name="aspartate kinase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0002 or STM4101 or STM4220 )</p>
- <p>SUBSYSTEM: Threonine and Lysine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_asp__L_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_4pasp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ASPO3" name="L aspartate oxidase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2641</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_q8_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_asp__L_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_q8h2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_iasp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ASPO4" name="L aspartate oxidase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2641</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_mqn8_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_asp__L_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_iasp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_mql8_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ASPO5" name="L aspartate oxidase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2641</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_fum_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_asp__L_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_iasp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_succ_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ASPO6" name="L aspartate oxidase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2641</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_o2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_asp__L_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_iasp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ASPT" name="L aspartase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4326</p>
- <p>SUBSYSTEM: Alanine and Aspartate Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_asp__L_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_fum_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nh4_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ASPTA" name="aspartate transaminase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0998</p>
- <p>SUBSYSTEM: Alanine and Aspartate Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_asp__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_akg_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_oaa_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ASPTRS" name="Aspartyl tRNA synthetase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1901</p>
- <p>SUBSYSTEM: tRNA Charging</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_asp__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_trnaasp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_asptrna_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ASPabcpp" name="L aspartate transport via ABC system periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0665 and STM0664 and STM0663 and STM0662 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_asp__L_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_asp__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ASPt2_2pp" name="Aspartate transport via proton symport 2 H periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3614</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="2" constant="true"/>
- <speciesReference species="M_asp__L_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_asp__L_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ASPt2pp" name="L aspartate transport in via proton symport periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4283</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_asp__L_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_asp__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ASPtex" name="L aspartate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_asp__L_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_asp__L_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_AST" name="Arginine succinyltransferase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1304</p>
- <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_arg__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_succoa_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_sucarg_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ATHRDHr" name="L allo threonine dehydrogenase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1511</p>
- <p>SUBSYSTEM: Threonine and Lysine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_athr__L_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_2aobut_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ATPHs" name="ATP amine hydrolysis spontaneous " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: s0001</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_itp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nh4_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ATPM" name="ATP maintenance requirement" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Unassigned</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ATPPRT" name="ATP phosphoribosyltransferase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2071</p>
- <p>SUBSYSTEM: Histidine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_prpp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_prbatp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ATPS4rpp" name="ATP synthase four protons for one ATP periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( ( ( STM3869 and STM3870 and STM3871 ) and ( STM3864 and STM3865 and STM3866 and STM3867 and STM3868 ) ) or ( ( STM3869 and STM3870 and STM3871 ) and ( STM3864 and STM3865 and STM3866 and STM3867 and STM3868 ) and STM3872 ) )</p>
- <p>SUBSYSTEM: Oxidative Phosphorylation</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="4" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="3" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_BALAt2pp" name="beta alanine transport in via proton symport periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4398</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ala__B_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ala__B_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_BALAtex" name="beta alanine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ala__B_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ala__B_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_BPNT" name="3 5 bisphosphate nucleotidase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Cysteine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pap_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_BSORx" name="Biotin sulfoxide reductase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3644</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_btnso_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_btn_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_BSORy" name="Biotin sulfoxide reductase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3644</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_btnso_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_btn_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_BTS4" name="Biotin synthase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0794</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_s_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_amet_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dtbt_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_dad__5_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_met__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_btn_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_BUTSO3tex" name="butanesulfonate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_butso3_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_butso3_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_BUTtex" name="Butyrate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_but_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_but_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CA2t3pp" name="calcium Ca2 transport out via proton antiport periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1771</p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ca2_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ca2_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CA2tex" name="calcium Ca2 transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ca2_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ca2_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CADVtpp" name="LysineCadaverine antiporter periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2558</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_15dap_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_lys__L_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_15dap_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_lys__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CAt6pp" name="calcium sodium antiporter 11 " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3314</p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ca2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_na1_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_na1_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ca2_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CBIAT" name="Cobinamide adenyltransferase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1718</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cbi_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pppi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adocbi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CBItonex" name="Cobinamide transport via ton system extermal " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM4130 and ( STM1737 and STM3158 and STM3159 ) )</p>
- <p>SUBSYSTEM: Transport Outer Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_cbi_e" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cbi_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CBIuabcpp" name="Cobinamide transport via ABC system uptake periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM1340 and STM1342 and STM0206 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_cbi_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cbi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CBL1abcpp" name="Cob 1 alamin transport via ABC system periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM1340 and STM1342 and STM0206 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_cbl1_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cbl1_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CBL1tonex" name="Cob 1 alamin transport via ton system extermal " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM4130 and ( STM1737 and STM3158 and STM3159 ) )</p>
- <p>SUBSYSTEM: Transport Outer Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cbl1_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cbl1_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CBPS" name="carbamoyl phosphate synthase glutamine hydrolysing " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0066 and STM0067 )</p>
- <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_gln__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_hco3_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cbp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CD2abcpp" name="Cadmium Cd2 ABC transporter periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3576</p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_cd2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cd2_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CD2t3pp" name="cadmium Cd2 transport out via proton antiport periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0758 or STM4061 )</p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cd2_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cd2_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CD2tex" name="cadmium Cd2 transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_cd2_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cd2_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CD2tpp" name="cadmium 2 transport in via permease no H " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3190</p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_cd2_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cd2_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CDAPPA120" name="CDP Diacylglycerol pyrophostatase n C120 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4064</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cdpdddecg_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_pa120_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cmp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CDAPPA140" name="CDP Diacylglycerol pyrophostatase n C140 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4064</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cdpdtdecg_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cmp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pa140_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CDAPPA141" name="CDP Diacylglycerol pyrophostatase n C141 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4064</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cdpdtdec7eg_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cmp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pa141_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CDAPPA160" name="CDP Diacylglycerol pyrophostatase n C160 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4064</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cdpdhdecg_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cmp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_pa160_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CDAPPA161" name="CDP Diacylglycerol pyrophostatase n C161 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4064</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cdpdhdec9eg_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cmp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pa161_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CDAPPA180" name="CDP Diacylglycerol pyrophostatase n C180 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4064</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_cdpdodecg_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cmp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_pa180_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CDAPPA181" name="CDP Diacylglycerol pyrophostatase n C181 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4064</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_cdpdodec11eg_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pa181_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cmp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CDPMEK" name="4 cytidine 5 diphospho 2 C methyl D erythritol kinase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1779</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_4c2me_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2p4c2me_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CFAS160E" name="cyclopropane fatty acid synthase Phosphatidylethanolamine n C160 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1427</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pe161_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_amet_c" stoichiometry="2" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ahcys_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_cpe160_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CFAS160G" name="cyclopropane fatty acid synthase Phosphatidylglycerol n C160 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1427</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pg161_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_amet_c" stoichiometry="2" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cpg160_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ahcys_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CFAS180E" name="cyclopropane fatty acid synthase Phosphatidylethanolamine n C180 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1427</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pe181_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_amet_c" stoichiometry="2" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ahcys_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_cpe180_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CFAS180G" name="cyclopropane fatty acid synthase Phosphatidylglycerol n C180 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1427</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pg181_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_amet_c" stoichiometry="2" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cpg180_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ahcys_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CGLYabcpp" name="L Cysteinylglycine Cys Gly transport via ABC system periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3630 and STM3629 and STM3628 and STM3627 and STM3626 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cgly_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cgly_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CGLYtex" name="L Cysteinylglycine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_cgly_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cgly_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CHLabcpp" name="choline transport via ABC system periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2162 and STM2163 and STM2164 and STM2165 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_chol_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_chol_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CHLtex" name="choline transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_chol_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_chol_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CHORS" name="chorismate synthase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2384</p>
- <p>SUBSYSTEM: Tyrosine Tryptophan and Phenylalanine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_3psme_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_chor_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CHRPL" name="Chorismate pyruvate lyase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4233</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_chor_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_4hbz_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CITL" name="Citrate lyase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( ( ( STM0621 and STM0622 and STM0623 ) or ( STM0059 and STM0060 and STM0061 ) ) and STM0620 )</p>
- <p>SUBSYSTEM: Citric Acid Cycle</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_cit_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ac_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_oaa_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CITt7pp" name="Citrate transport via succinate antiport periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0618</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_succ_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cit_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cit_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_succ_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CITtex" name="citrate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_cit_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cit_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ICITtex" name="citrate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_icit_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_icit_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ACONCtex" name="cisaconitat transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_acon__C_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_acon__C_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CLIPAtex" name="cold lipid A transport via vector periplasm to extracellular " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_lipa__cold_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_lipa__cold_e" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CLPNH120pp" name="cardiolipin hydrolase periplasm n C120 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_clpn120_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pg120_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pa120_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CLPNH140pp" name="cardiolipin hydrolase periplasm n C140 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_clpn140_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pa140_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pg140_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CLPNH141pp" name="cardiolipin hydrolase periplasm n C141 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_clpn141_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pa141_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pg141_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CLPNH160pp" name="cardiolipin hydrolase periplasm n C160 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_clpn160_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pg160_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pa160_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CLPNH161pp" name="cardiolipin hydrolase periplasm n C161 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_clpn161_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pa161_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pg161_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CLPNH180pp" name="cardiolipin hydrolase periplasm n C180 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_clpn180_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pa180_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pg180_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CLPNH181pp" name="cardiolipin hydrolase periplasm n C181 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_clpn181_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pa181_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pg181_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CLPNS120pp" name="cardiolipin synthase periplasmic n C120 " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM1739 or STM0812 )</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pg120_p" stoichiometry="2" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_clpn120_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glyc_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CLPNS140pp" name="cardiolipin synthase periplasmic n C140 " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM1739 or STM0812 )</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pg140_p" stoichiometry="2" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_clpn140_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glyc_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CLPNS141pp" name="cardiolipin synthase periplasmic n C141 " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM1739 or STM0812 )</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pg141_p" stoichiometry="2" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_clpn141_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glyc_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CLPNS160pp" name="cardiolipin synthase periplasmic n C160 " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM1739 or STM0812 )</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pg160_p" stoichiometry="2" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glyc_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_clpn160_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CLPNS161pp" name="cardiolipin synthase periplasmic n C161 " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM1739 or STM0812 )</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pg161_p" stoichiometry="2" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glyc_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_clpn161_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CLPNS180pp" name="cardiolipin synthase periplasmic n C180 " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM1739 or STM0812 )</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pg180_p" stoichiometry="2" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glyc_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_clpn180_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CLPNS181pp" name="cardiolipin synthase periplasmic n C181 " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM1739 or STM0812 )</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pg181_p" stoichiometry="2" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_clpn181_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glyc_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CLt3_2pp" name="chloride transport out via proton antiport 21 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0203 or STM1490 )</p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cl_p" stoichiometry="2" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cl_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CLtex" name="chloride Cl 1 transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_cl_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cl_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CMPN" name="CMP nucleosidase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_cmp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_r5p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_csn_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CMPtex" name="CMP transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_cmp_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cmp_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CO2tex" name="CO2 transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_co2_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_co2_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CO2tpp" name="CO2 transporter via diffusion periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: s0001</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_co2_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_COBALT2abcpp" name="Cobalt Co2 ABC transporter periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3576</p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cobalt2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cobalt2_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_COBALT2t3pp" name="cobalt Co2 transport out via proton antiport periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM4061 or STM0758 )</p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cobalt2_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cobalt2_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_COBALT2tex" name="cobalt Co2 transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_cobalt2_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cobalt2_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_COBALT2tpp" name="cobalt transport in via permease no H " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3190 or STM3952 )</p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_cobalt2_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cobalt2_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_COLIPAabcpp" name="core oligosaccharide lipid A transport via ABC system periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0984</p>
- <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_colipa_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_colipa_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_COLIPAtex" name="core oligosaccharide lipid A transport via vector periplasm to extracellular " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_colipa_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_colipa_e" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CPGNR1" name="coprogen Fe III reductase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_fadh2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cpgn_c" stoichiometry="2" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_fe2_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_cpgn__un_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_fad_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CPGNR2" name="coprogen Fe III reductase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_cpgn_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_fmnh2_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_fmn_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cpgn__un_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_fe2_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CPGNR3" name="coprogen Fe III reductase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_cpgn_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_rbflvrd_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_fe2_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_cpgn__un_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_ribflv_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CPGNUtex" name="coprogen unloaded secretion extracellular " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cpgn__un_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cpgn__un_e" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CPGNUtpp" name="coprogen unloaded secretion" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cpgn__un_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cpgn__un_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CPGNabcpp" name="coprogen transport via ABC system periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0194 and STM0192 and STM0193 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cpgn_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cpgn_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CPGNexs" name="coprogen Fe loading reaction spontaneaous " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: s0001</p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_fe3_e" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cpgn__un_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cpgn_e" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CPGNtonex" name="Coprogen transport via ton system extracellular " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM1204 and ( STM1737 and STM3158 and STM3159 ) )</p>
- <p>SUBSYSTEM: Transport Outer Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_cpgn_e" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cpgn_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CPPPGO" name="coproporphyrinogen oxidase O2 required " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2451</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_cpppg3_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_o2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_co2_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_pppg9_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CPPPGO2" name="Oxygen Independent coproporphyrinogen III oxidase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4004</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_cpppg3_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_amet_c" stoichiometry="2" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_dad__5_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_co2_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_pppg9_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_met__L_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CRNBTCT" name="gamma butyrobetainyl CoA carnitine CoA transferase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0072</p>
- <p>SUBSYSTEM: Oxidative Phosphorylation</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_bbtcoa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_crn_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_gbbtn_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_crncoa_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CRNCAL2" name="Carnitine CoA Ligase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0071</p>
- <p>SUBSYSTEM: Oxidative Phosphorylation</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_crn_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_crncoa_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CRNCAR" name="carnitine CoA racemase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0070</p>
- <p>SUBSYSTEM: Oxidative Phosphorylation</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_crncoa_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_crnDcoa_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CRNCBCT" name="crotonobetainyl CoA carnitine CoA transferase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0072</p>
- <p>SUBSYSTEM: Oxidative Phosphorylation</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ctbtcoa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_crn_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ctbt_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_crncoa_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CRNCDH" name="Carnityl CoA dehydratse" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0070</p>
- <p>SUBSYSTEM: Oxidative Phosphorylation</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_crncoa_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ctbtcoa_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CRNDCAL2" name="D Carnitine CoA Ligase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0071</p>
- <p>SUBSYSTEM: Oxidative Phosphorylation</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_crn__D_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_crnDcoa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CRNDabcpp" name="D carnitine transport via ABC system periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2809 and STM2810 and STM2811 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_crn__D_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_crn__D_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CRNDt2rpp" name="D carnitine outward transport H antiport " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4290</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_crn__D_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_crn__D_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CRNabcpp" name="L carnitine transport via ABC system periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2809 and STM2810 and STM2811 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_crn_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_crn_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CRNt2rpp" name="L carnitine outward transport H antiport " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4290</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_crn_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_crn_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CRNt7pp" name="Carnitinebutyrobetaine antiporter periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0074</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_crn_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gbbtn_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_crn_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gbbtn_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CRNt8pp" name="L carnitineD carnitine antiporter periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0074</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_crn__D_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_crn_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_crn_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_crn__D_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CRNtex" name="L carnitine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_crn_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_crn_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CS" name="citrate synthase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0730</p>
- <p>SUBSYSTEM: Citric Acid Cycle</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_accoa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_oaa_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cit_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CSNtex" name="cytosine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_csn_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_csn_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CTBTCAL2" name="Crotonobetaine CoA Ligase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0071</p>
- <p>SUBSYSTEM: Oxidative Phosphorylation</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ctbt_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ctbtcoa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CTBTabcpp" name="crotonobetaine transport via ABC system periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2809 and STM2810 and STM2811 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ctbt_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ctbt_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CTBTt2rpp" name="cronobetaine outward transport H antiport " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4290</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ctbt_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ctbt_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CTPS2" name="CTP synthase glutamine " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2953</p>
- <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_utp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gln__L_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_ctp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CU1Opp" name="Cuprous Oxidase Cu1 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0168</p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_o2_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cu_p" stoichiometry="4" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="4" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h2o_p" stoichiometry="2" constant="true"/>
- <speciesReference species="M_cu2_p" stoichiometry="4" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CU1abcpp" name="Copper Cu 1 ABC transporter periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0498</p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_cu_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cu_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_AU1abcpp" name="Gold Au 1 ABC transporter periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0353</p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_au_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_au_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CU2abcpp" name="Copper Cu2 ABC transporter periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3576</p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_cu2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cu2_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CU2tex" name="copper Cu2 transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2267 or STM0320 or STM0999 or STM1473 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_cu2_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cu2_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CU2tpp" name="copper transport in via permease no H " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3190</p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_cu2_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cu2_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CUtex" name="copper Cu1 transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_cu_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cu_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CYANST" name="Cyanide sulfurtransferase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3525</p>
- <p>SUBSYSTEM: Unassigned</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_cyan_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_tsul_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_so3_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_tcynt_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CYANSTpp" name="Cyanide sulfurtransferase periplasmic " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1686</p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_tsul_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cyan_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_so3_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_tcynt_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CYANtex" name="Cyanide transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_cyan_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cyan_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CYNTtex" name="Cyanate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_cynt_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cynt_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CYSDS" name="Cysteine Desulfhydrase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3161</p>
- <p>SUBSYSTEM: Cysteine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cys__L_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2s_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nh4_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CYSDtex" name="D cysteine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_cys__D_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cys__D_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CYSS" name="cysteine synthase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2430 or STM2440 )</p>
- <p>SUBSYSTEM: Cysteine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2s_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_acser_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ac_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cys__L_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CYSSADS" name="L cysteine sulfinic acid desulfurase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2984</p>
- <p>SUBSYSTEM: Cysteine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_3sala_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ala__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_so2_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CYSTL" name="cystathionine b lyase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3161 or STM1557 )</p>
- <p>SUBSYSTEM: Methionine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cyst__L_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nh4_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_hcys__L_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CYSTRS" name="Cysteinyl tRNA synthetase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0537</p>
- <p>SUBSYSTEM: tRNA Charging</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cys__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_trnacys_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cystrna_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CYSabc2pp" name="L cysteine export via ABC system cytoplasm to periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0956 and STM0957 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cys__L_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cys__L_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CYSabcpp" name="L cysteine uptake via ABC system periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_cys__L_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cys__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CYSIabcpp" name="L cystine uptake via ABC system periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_cysi__L_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cysi__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CYStex" name="L cysteine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_cys__L_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cys__L_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CYSItex" name="L cystine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_cysi__L_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cysi__L_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CYStpp" name="L cysteine export via facilitated transport" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2645 or STM1517 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_cys__L_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cys__L_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CYTBO3_4pp" name="cytochrome oxidase bo3 ubiquinol 8 4 protons periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0440 and STM0441 and STM0442 and STM0443 )</p>
- <p>SUBSYSTEM: Oxidative Phosphorylation</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_q8h2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_o2_c" stoichiometry="0.5" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="4" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_q8_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="4" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CYTD" name="cytidine deaminase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2183</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cytd_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_uri_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nh4_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CYTDH" name="Cytidine hydrolase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0661 or STM0051 )</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_cytd_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_rib__D_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_csn_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CYTDK2" name="cytidine kinase GTP " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2122</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_cytd_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gtp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cmp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gdp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CYTDt2pp" name="cytidine transport in via proton symport periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3113 or STM2409 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cytd_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cytd_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CYTDt2rpp" name="cytidine transport in via proton symport reversible periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2421</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_cytd_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cytd_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CYTDtex" name="cytidine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_cytd_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cytd_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CYTK1" name="cytidylate kinase CMP " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0980</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cmp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cdp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CYTK2" name="cytidylate kinase dCMP " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0980</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dcmp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_dcdp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DAAD" name="D Amino acid dehydrogenase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1803</p>
- <p>SUBSYSTEM: Alanine and Aspartate Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ala__D_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_fadh2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nh4_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DADA" name="Deoxyadenosine deaminase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1463</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_dad__2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_din_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nh4_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DADK" name="deoxyadenylate kinase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0488</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_damp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dadp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DADNt2pp" name="deoxyadenosine transport in via proton symport periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2409 or STM3113 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_dad__2_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_dad__2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DADNtex" name="deoxyadenosine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0413</p>
- <p>SUBSYSTEM: Transport Outer Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_dad__2_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_dad__2_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DAGK120" name="diacylglycerol kinase n C120 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4236</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_12dgr120_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pa120_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DAGK140" name="diacylglycerol kinase n C140 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4236</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_12dgr140_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pa140_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DAGK141" name="diacylglycerol kinase n C141 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4236</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_12dgr141_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pa141_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DAGK160" name="diacylglycerol kinase n C160 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4236</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_12dgr160_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pa160_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DAGK161" name="diacylglycerol kinase n C161 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4236</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_12dgr161_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pa161_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DAGK180" name="diacylglycerol kinase n C180 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4236</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_12dgr180_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pa180_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DAGK181" name="diacylglycerol kinase n C181 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4236</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_12dgr181_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pa181_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DALAt2pp" name="D alanine transport in via proton symport periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4398</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ala__D_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ala__D_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DALAtex" name="D Alanine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ala__D_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ala__D_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DAMPtex" name="dAMP transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_damp_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_damp_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DAPDC" name="diaminopimelate decarboxylase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3013</p>
- <p>SUBSYSTEM: Threonine and Lysine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_26dap__M_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_lys__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DAPE" name="diaminopimelate epimerase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3947</p>
- <p>SUBSYSTEM: Threonine and Lysine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_26dap__LL_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_26dap__M_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DAPabcpp" name="M diaminopimelic acid ABC transport periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1954</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_26dap__M_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_26dap__M_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DAPtex" name="1 5 Diaminopentane transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_15dap_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_15dap_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DASYN120" name="CDP diacylglycerol synthetase n C120 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0222</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pa120_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ctp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cdpdddecg_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DASYN140" name="CDP diacylglycerol synthetase n C140 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0222</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pa140_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ctp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cdpdtdecg_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DASYN141" name="CDP diacylglycerol synthetase n C141 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0222</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pa141_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ctp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cdpdtdec7eg_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DASYN160" name="CDP diacylglycerol synthetase n C160 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0222</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pa160_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ctp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cdpdhdecg_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DASYN161" name="CDP diacylglycerol synthetase n C161 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0222</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pa161_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ctp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cdpdhdec9eg_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DASYN180" name="CDP diacylglycerol synthetase n C180 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0222</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ctp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pa180_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cdpdodecg_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DASYN181" name="CDP diacylglycerol synthetase n C181 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0222</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pa181_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ctp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cdpdodec11eg_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DATPHs" name="dATP amine hydrolysis spontaneous " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: s0001</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_datp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ditp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nh4_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DB4PS" name="3 4 Dihydroxy 2 butanone 4 phosphate synthase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3195</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ru5p__D_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_for_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_db4p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DBTS" name="dethiobiotin synthase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0797 or STM1489 )</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dann_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dtbt_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="3" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DCAtex" name="Decanoate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_dca_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_dca_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DCMPtex" name="dCMP transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_dcmp_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_dcmp_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DCTPD" name="dCTP deaminase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2121</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_dctp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_dutp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nh4_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DCYTD" name="deoxycytidine deaminase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2183</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_dcyt_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_duri_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nh4_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DCYTt2pp" name="deoxycytidine transport in via proton symport periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3113 or STM2409 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dcyt_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_dcyt_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DCYTtex" name="deoxycytidine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0413</p>
- <p>SUBSYSTEM: Transport Outer Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_dcyt_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_dcyt_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DDCAtexi" name="Fatty acid dodecanoate transport via facilitated irreversible diffusion extracellular to periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2391</p>
- <p>SUBSYSTEM: Transport Outer Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ddca_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ddca_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DDGALK" name="2 dehydro 3 deoxygalactonokinase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3829</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_2dh3dgal_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2dh3dgal6p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DDGLCNtex" name="2 dehydro 3 deoxy D gluconate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_2ddglcn_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_2ddglcn_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DDGLK" name="2 dehydro 3 deoxygluconokinase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3612</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2ddglcn_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2ddg6p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DDPA" name="3 deoxy D arabino heptulosonate 7 phosphate synthetase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2670 or STM0760 or STM1347 )</p>
- <p>SUBSYSTEM: Tyrosine Tryptophan and Phenylalanine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_e4p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pep_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_2dda7p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DGK1" name="deoxyguanylate kinase dGMPATP " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3740</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dgmp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_dgdp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DGMPtex" name="dGMP transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_dgmp_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_dgmp_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DGSNt2pp" name="deoxyguanosine transport in via proton symport periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3113</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_dgsn_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_dgsn_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DGSNtex" name="deoxyguanosine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_dgsn_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_dgsn_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DHAD1" name="dihydroxy acid dehydratase 2 3 dihydroxy 3 methylbutanoate " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3904</p>
- <p>SUBSYSTEM: Valine Leucine and Isoleucine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_23dhmb_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_3mob_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DHAD2" name="Dihydroxy acid dehydratase 2 3 dihydroxy 3 methylpentanoate " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3904</p>
- <p>SUBSYSTEM: Valine Leucine and Isoleucine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_23dhmp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_3mop_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DHAtex" name="Dihydroxyacetone transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_dha_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_dha_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DHAtpp" name="Dihydroxyacetone transport via facilitated diffusion periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_dha_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_dha_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DHBD" name="2 3 dihydro 2 3 dihydroxybenzoate dehydrogenase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0598</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_23ddhb_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_23dhb_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DHBS" name="2 3 dihydroxybenzoate adenylate synthase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0596</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_23dhb_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_23dhba_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DHDPRy" name="dihydrodipicolinate reductase NADPH " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0064</p>
- <p>SUBSYSTEM: Threonine and Lysine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_23dhdp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_thdp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DHDPS" name="dihydrodipicolinate synthase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2489</p>
- <p>SUBSYSTEM: Threonine and Lysine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_aspsa_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_23dhdp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DHFR" name="dihydrofolate reductase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0087</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_dhf_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_thf_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DHFS" name="dihydrofolate synthase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2365</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_dhpt_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dhf_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DHNAOT4" name="1 4 dihydroxy 2 naphthoate octaprenyltransferase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4090</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_dhna_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_octdp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_2dmmql8_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DHNPA2" name="dihydroneopterin aldolase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3206</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_dhnpt_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_6hmhpt_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gcald_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DHORD2" name="dihydoorotic acid dehydrogenase quinone8 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1058</p>
- <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_q8_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dhor__S_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_orot_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_q8h2_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DHORD5" name="dihydroorotic acid menaquinone 8 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1058</p>
- <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_mqn8_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dhor__S_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_mql8_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_orot_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DHORTS" name="dihydroorotase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1163</p>
- <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dhor__S_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cbasp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DHPPDA2" name="diaminohydroxyphosphoribosylaminopryrimidine deaminase 25drapp " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0416</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_25drapp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_5apru_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nh4_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DHPS2" name="dihydropteroate synthase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3295</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_6hmhptpp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_4abz_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_dhpt_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DHPTDCs" name="4 5 dihydroxy 2 3 pentanedione cyclization spontaneous " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: s0001</p>
- <p>SUBSYSTEM: Methionine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_dhptd_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_hmfurn_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DHQS" name="3 dehydroquinate synthase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3486</p>
- <p>SUBSYSTEM: Tyrosine Tryptophan and Phenylalanine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_2dda7p_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_3dhq_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DHQTi" name="3 dehydroquinate dehydratase irreversible" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1358</p>
- <p>SUBSYSTEM: Tyrosine Tryptophan and Phenylalanine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_3dhq_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_3dhsk_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DIMPtex" name="dIMP transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_dimp_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_dimp_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DINSt2pp" name="deoxyinosine transport in via proton symport periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3113</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_din_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_din_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DINStex" name="deoxyinosine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_din_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_din_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DKGLCNR1" name="2 5 diketo D gluconate reductase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3165 or STM0255 )</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_25dkglcn_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2dhguln_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DKGLCNR2x" name="2 5 diketo D gluconate reductase NADH " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3646</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_25dkglcn_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_5dglcn_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DKGLCNR2y" name="2 5 diketo D gluconate reductase NADPH " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3646</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_25dkglcn_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_5dglcn_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DKMPPD" name="2 3 diketo 5 methylthio 1 phosphopentane degradation reaction" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_dkmpp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_o2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_2kmb_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_for_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DKMPPD3" name="2 3 diketo 5 methylthio 1 phosphopentane degradation reaction" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_dkmpp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="3" constant="true"/>
- <speciesReference species="M_nad_c" stoichiometry="2" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_2kmb_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="4" constant="true"/>
- <speciesReference species="M_nadh_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_for_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DMATT" name="dimethylallyltranstransferase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0423</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_dmpp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ipdp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_grdp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DMPPS" name="1 hydroxy 2 methyl 2 E butenyl 4 diphosphate reductase dmpp " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0049</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2mb4p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dmpp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DMQMT" name="3 Dimethylubiquinonol 3 methyltransferase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2276</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_2omhmbl_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_amet_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ahcys_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_q8h2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DMSOtex" name="Dimethyl sulfoxide transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_dmso_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_dmso_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DMStex" name="Dimethyl sulfide transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_dms_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_dms_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DM_4HBA" name="Sink needed to allow 4 hydroxy benzoate to leave system" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_4hba_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_4hba_c_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DM_5DRIB" name="Sink needed to allow 5 deoxyribose to leave system" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_5drib_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_5drib_c_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DM_HMFURN" name="Sink needed to allow 4 hydroxy 5 methyl 3 2H furanone to leave system" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_hmfurn_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_hmfurn_c_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DM_OXAM" name="Sink needed to allow oxamate to leave system" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_oxam_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_oxam_c_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DNMPPA" name="Dihydroneopterin monophosphate dephosphorylase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_dhpmp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_dhnpt_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DNTPPA" name="Dihydroneopterin triphosphate pyrophosphatase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM1900 or STM0137 )</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ahdt_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_dhpmp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DOGULNR" name="2 3 dioxo L gulonate reductase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3668</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_23doguln_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_3dhguln_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DOPAtex" name="dopamine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_dopa_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_dopa_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DPCOAK" name="dephospho CoA kinase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0140</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dpcoa_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DRPA" name="deoxyribose phosphate aldolase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4567</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_2dr5p_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_g3p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_acald_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DSBAO1" name="DsbA protein reoxidation reaction aerobic " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3997 and STM1807 )</p>
- <p>SUBSYSTEM: Unassigned</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_q8_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dsbard_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_q8h2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dsbaox_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DSBAO2" name="DsbA protein reoxidation reaction anaerobic " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3997 and STM1807 )</p>
- <p>SUBSYSTEM: Unassigned</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_mqn8_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dsbard_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_dsbaox_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_mql8_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DSBCGT" name="DsbCglutathione thiotransferase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3043</p>
- <p>SUBSYSTEM: Unassigned</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_gthrd_p" stoichiometry="2" constant="true"/>
- <speciesReference species="M_dsbcox_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_gthox_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dsbcrd_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DSBDR" name="DsbD reductase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( ( STM4323 and STM3915 ) or ( STM4323 and STM2649 ) )</p>
- <p>SUBSYSTEM: Unassigned</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_trdrd_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dsbdox_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_trdox_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dsbdrd_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DSBGGT" name="DsbGglutathione thiotransferase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0607</p>
- <p>SUBSYSTEM: Unassigned</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_dsbgox_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gthrd_p" stoichiometry="2" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_dsbgrd_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gthox_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DSERDHr" name="D serine dehydrogenase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1511</p>
- <p>SUBSYSTEM: Glycine and Serine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ser__D_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2amsa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DSERt2pp" name="D serine transport in via proton symport periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4398</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ser__D_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ser__D_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DSERtex" name="D serine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ser__D_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ser__D_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DTMPK" name="dTMP kinase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1200</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dtmp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dtdp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DTMPtex" name="dTMP transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_dtmp_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_dtmp_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DUMPtex" name="dUMP transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_dump_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_dump_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DURIK1" name="deoxyuridine kinase ATPDeoxyuridine " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1750</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_duri_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_dump_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DURIPP" name="deoxyuridine phosphorylase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM4568 or STM4570 )</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_duri_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_2dr1p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ura_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DURIt2pp" name="deoxyuridine transport in via proton symport periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2409 or STM3113 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_duri_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_duri_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DURItex" name="deoxyuridine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0413</p>
- <p>SUBSYSTEM: Transport Outer Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_duri_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_duri_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DUTPDP" name="dUTP diphosphatase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3731</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dutp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_dump_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DXPRIi" name="1 deoxy D xylulose reductoisomerase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0220</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dxyl5p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_2me4p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DXPS" name="1 deoxy D xylulose 5 phosphate synthase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0422</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_g3p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dxyl5p_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DXYLK" name="1 Deoxy D xylulose kinase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3660</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dxyl_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dxyl5p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_D_LACt2pp" name="D lactate transport via proton symport periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3692</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_lac__D_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_lac__D_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_D_LACtex" name="D lactate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_lac__D_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_lac__D_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_E4PD" name="Erythrose 4 phosphate dehydrogenase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3070</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_e4p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_4per_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EAR100x" name="enoyl acyl carrier protein reductase NADH n C100 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1700</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_tdec2eACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dcaACP_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EAR100y" name="enoyl acyl carrier protein reductase NADPH n C100 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1700</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_tdec2eACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dcaACP_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EAR120x" name="enoyl acyl carrier protein reductase NADH n C120 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1700</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_tddec2eACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ddcaACP_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EAR120y" name="enoyl acyl carrier protein reductase NADPH n C120 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1700</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_tddec2eACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ddcaACP_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EAR121x" name="enoyl acyl carrier protein reductase NADH n C121 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1700</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_t3c5ddeceACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cddec5eACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EAR121y" name="enoyl acyl carrier protein reductase NADPH n C121 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1700</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_t3c5ddeceACP_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cddec5eACP_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EAR140x" name="enoyl acyl carrier protein reductase NADH n C140 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1700</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_tmrs2eACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_myrsACP_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EAR140y" name="enoyl acyl carrier protein reductase NADPH n C140 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1700</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_tmrs2eACP_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_myrsACP_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EAR141x" name="enoyl acyl carrier protein reductase NADH n C141 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1700</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_t3c7mrseACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_tdeACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EAR141y" name="enoyl acyl carrier protein reductase NADPH n C141 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1700</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_t3c7mrseACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_tdeACP_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EAR160x" name="enoyl acyl carrier protein reductase NADH n C160 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1700</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_tpalm2eACP_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_palmACP_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EAR160y" name="enoyl acyl carrier protein reductase NADPH n C160 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1700</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_tpalm2eACP_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_palmACP_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EAR161x" name="enoyl acyl carrier protein reductase NADH n C161 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1700</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_t3c9palmeACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_hdeACP_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EAR161y" name="enoyl acyl carrier protein reductase NADPH n C161 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1700</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_t3c9palmeACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_hdeACP_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EAR180x" name="enoyl acyl carrier protein reductase NADH n C180 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1700</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_toctd2eACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ocdcaACP_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EAR180y" name="enoyl acyl carrier protein reductase NADPH n C180 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1700</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_toctd2eACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ocdcaACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EAR181x" name="enoyl acyl carrier protein reductase NADH n C181 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1700</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_t3c11vaceACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_octeACP_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EAR181y" name="enoyl acyl carrier protein reductase NADPH n C181 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1700</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_t3c11vaceACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_octeACP_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EAR40x" name="enoyl acyl carrier protein reductase NADH n C40 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1700</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_but2eACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_butACP_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EAR40y" name="enoyl acyl carrier protein reductase NADPH n C40 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1700</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_but2eACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_butACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EAR60x" name="enoyl acyl carrier protein reductase NADH n C60 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1700</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_thex2eACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_hexACP_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EAR60y" name="enoyl acyl carrier protein reductase NADPH n C60 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1700</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_thex2eACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_hexACP_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EAR80x" name="enoyl acyl carrier protein reductase NADH n C80 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1700</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_toct2eACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ocACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EAR80y" name="enoyl acyl carrier protein reductase NADPH n C80 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1700</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_toct2eACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ocACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ECA4COLIPAtex" name="enterobacterial common antigen x4 core oligosaccharide lipid A transport periplasm to extracellular " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_eca4colipa_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_eca4colipa_e" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ECA4OALpp" name="enterobacterial common antigen x4 O antigen ligase periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3713</p>
- <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_eca4und_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_colipa_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_eca4colipa_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udcpdp_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ECAP1pp" name="enterobacterial common antigen polymerase periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3928 and STM3919 )</p>
- <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_unagamuf_p" stoichiometry="2" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_eca2und_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udcpdp_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ECAP2pp" name="enterobacterial common antigen polymerase periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3928 and STM3919 )</p>
- <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_unagamuf_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_eca2und_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_eca3und_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udcpdp_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ECAP3pp" name="enterobacterial common antigen polymerase periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3928 and STM3919 )</p>
- <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_eca3und_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_unagamuf_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_eca4und_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udcpdp_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ECAtpp" name="enterobacterial common antigen transferase flippase cytoplasm to periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3926</p>
- <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_unagamuf_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_unagamuf_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ECOAH1" name="3 hydroxyacyl CoA dehydratase 3 hydroxybutanoyl CoA " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3983 or STM2388 )</p>
- <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_3hbcoa_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_b2coa_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ECOAH2" name="3 hydroxyacyl CoA dehydratase 3 hydroxyhexanoyl CoA " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3983 or STM2388 )</p>
- <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_3hhcoa_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_hx2coa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ECOAH3" name="3 hydroxyacyl CoA dehydratase 3 hydroxyoctanoyl CoA " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2388 or STM3983 )</p>
- <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_3hocoa_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_oc2coa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ECOAH4" name="3 hydroxyacyl CoA dehydratase 3 hydroxydecanoyl CoA " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3983 or STM2388 )</p>
- <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_3hdcoa_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dc2coa_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ECOAH5" name="3 hydroxyacyl CoA dehydratase 3 hydroxydodecanoyl CoA " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3983 or STM2388 )</p>
- <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_3hddcoa_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dd2coa_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ECOAH6" name="3 hydroxyacyl CoA dehydratase 3 hydroxytetradecanoyl CoA " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3983 or STM2388 )</p>
- <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_3htdcoa_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_td2coa_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ECOAH7" name="3 hydroxyacyl CoA dehydratase 3 hydroxyhexadecanoyl CoA " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3983 or STM2388 )</p>
- <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_3hhdcoa_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_hdd2coa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ECOAH8" name="3 hydroxyacyl CoA dehydratase 3 hydroxyoctadecanoyl CoA " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3983 or STM2388 )</p>
- <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_3hodcoa_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_od2coa_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EDA" name="2 dehydro 3 deoxy phosphogluconate aldolase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1884</p>
- <p>SUBSYSTEM: Pentose Phosphate Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_2ddg6p_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_g3p_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EDD" name="6 phosphogluconate dehydratase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1885</p>
- <p>SUBSYSTEM: Pentose Phosphate Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_6pgc_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_2ddg6p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EDTXS1" name="Endotoxin Synthesis lauroyl transferase " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1155</p>
- <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ddcaACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_kdo2lipid4_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_kdo2lipid4L_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EDTXS2" name="Endotoxin Synthesis myristoyl transferase " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1889</p>
- <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_myrsACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_kdo2lipid4L_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_lipa_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EDTXS3" name="Endotoxin Synthesis palmitoleoyl ACP " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2401</p>
- <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_hdeACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_kdo2lipid4_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_kdo2lipid4p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EDTXS4" name="Endotoxin Synthesis myristoyl transferase " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1889</p>
- <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_myrsACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_kdo2lipid4p_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_lipa__cold_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ENLIPAtex" name="phosphoethanolamine lipid A transport via vector periplasm to extracellular " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_enlipa_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_enlipa_e" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ENO" name="enolase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2952</p>
- <p>SUBSYSTEM: GlycolysisGluconeogenesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_2pg_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pep_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ENTCS" name="enterochelin synthase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0584</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_23dhba_c" stoichiometry="3" constant="true"/>
- <speciesReference species="M_seramp_c" stoichiometry="3" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_amp_c" stoichiometry="6" constant="true"/>
- <speciesReference species="M_enter_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="9" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ETHAAL" name="Ethanolamine ammonia lyase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2457 and STM2458 )</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_etha_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nh4_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_acald_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ETHAt2pp" name="ethanolamine transport in via proton symport" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2460</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_etha_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_etha_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ETHAtex" name="ethanolamine transport via diffusion extracellular " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_etha_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_etha_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ETHSO3tex" name="ethanesulfonate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ethso3_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ethso3_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ETOHt2rpp" name="ethanol reversible transport via proton symport periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_etoh_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_etoh_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ETOHtex" name="ethanol transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_etoh_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_etoh_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_chitob_e" name="Chitobiose exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_chitob_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_chitob_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_pydxn_e" name="Pyridoxine exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pydxn_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pydxn_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_pydx_e" name="Pyridoxal exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pydx_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pydx_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_12ppd__R_e" name=" R Propane 1 2 diol exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_12ppd__R_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_12ppd__R_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_12ppd__S_e" name=" S Propane 1 2 diol exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_12ppd__S_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_12ppd__S_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_14glucan_e" name="1 4 alpha D glucan exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_14glucan_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_14glucan_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_15dap_e" name="1 5 Diaminopentane exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_15dap_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_15dap_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_23camp_e" name="2 3 Cyclic AMP exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_23camp_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_23camp_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_23ccmp_e" name="2 3 Cyclic CMP exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_23ccmp_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_23ccmp_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_23cgmp_e" name="2 3 Cyclic GMP exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_23cgmp_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_23cgmp_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_23cump_e" name="2 3 Cyclic UMP exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_23cump_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_23cump_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_23dappa_e" name="2 3 diaminopropionate exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_23dappa_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_23dappa_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_26dap__M_e" name="meso 2 6 Diaminoheptanedioate exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_26dap__M_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_26dap__M_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_2ddglcn_e" name="2 Dehydro 3 deoxy D gluconate exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_2ddglcn_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_2ddglcn_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_34dhpac_e" name="3 4 Dihydroxyphenylacetaldehyde exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_34dhpac_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_34dhpac_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_3amp_e" name="3 AMP exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_3amp_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_3amp_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_3cmp_e" name="3 cmp exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_3cmp_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_3cmp_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_3gmp_e" name="3 GMP exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_3gmp_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_3gmp_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_3hcinnm_e" name="3 hydroxycinnamic acid exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_3hcinnm_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_3hcinnm_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_3hpppn_e" name="3 3 hydroxy phenyl propionate exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_3hpppn_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_3hpppn_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_3ump_e" name="3 UMP exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_3ump_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_3ump_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_4abut_e" name="4 Aminobutanoate exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_4abut_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_4abut_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_4hoxpacd_e" name="4 Hydroxyphenylacetaldehyde exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_4hoxpacd_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_4hoxpacd_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_5dglcn_e" name="5 Dehydro D gluconate exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_5dglcn_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_5dglcn_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_LalaDgluMdapDala_e" name="L alanine D glutamate meso 2 6 diaminoheptanedioate D alanine exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_LalaDgluMdapDala_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_LalaDgluMdapDala_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_LalaDgluMdap_e" name="L alanine D glutamate meso 2 6 diaminoheptanedioate exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_LalaDgluMdap_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_LalaDgluMdap_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_ac_e" name="Acetate exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ac_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ac_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_acac_e" name="Acetoacetate exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_acac_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_acac_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_acald_e" name="Acetaldehyde exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_acald_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_acald_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_acgal1p_e" name="N Acetyl D galactosamine 1 phosphate exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_acgal1p_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_acgal1p_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_acgal_e" name="N Acetyl D galactosamine exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_acgal_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_acgal_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_acgam1p_e" name="N Acetyl D glucosamine 1 phosphate exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_acgam1p_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_acgam1p_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_acgam_e" name="N Acetyl D glucosamine exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_acgam_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_acgam_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_acmana_e" name="N Acetyl D mannosamine exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_acmana_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_acmana_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_acmum_e" name="N Acetylmuramate exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_acmum_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_acmum_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_acnam_e" name="N Acetylneuraminate exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_acnam_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_acnam_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_acolipa_e" name="4 Amino 4 deoxy L arabinose modified core oligosaccharide lipid A exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_acolipa_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_acolipa_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_acser_e" name="O Acetyl L serine exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_acser_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_acser_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_ade_e" name="Adenine exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ade_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ade_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_adn_e" name="Adenosine exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_adn_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adn_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_adocbl_e" name="Adenosylcobalamin exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_adocbl_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adocbl_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_ag_e" name="silver exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ag_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ag_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_agm_e" name="Agmatine exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_agm_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_agm_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_akg_e" name="2 Oxoglutarate exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_akg_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_akg_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_ala__B_e" name="beta Alanine exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ala__B_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ala__B_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_ala__D_e" name="D Alanine exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ala__D_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ala__D_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_ala__L_e" name="L Alanine exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ala__L_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ala__L_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_alaala_e" name="D Alanyl D alanine exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_alaala_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_alaala_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_all__D_e" name="D Allose exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_all__D_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_all__D_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_alltn_e" name="Allantoin exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_alltn_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_alltn_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_amp_e" name="AMP exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_amp_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_amp_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_anhgm_e" name="N Acetyl D glucosamine anhydrous N Acetylmuramic acid exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_anhgm_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_anhgm_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_arab__L_e" name="L Arabinose exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_arab__L_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_arab__L_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_arbtn_e" name="aerobactin minus Fe3 exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_arbtn_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_arbtn_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_arbtn__fe3_e" name="Aerobactin exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_arbtn__fe3_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_arbtn__fe3_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_arg__L_e" name="L Arginine exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_arg__L_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_arg__L_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_ascb__L_e" name="L Ascorbate exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ascb__L_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ascb__L_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_asn__L_e" name="L Asparagine exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_asn__L_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_asn__L_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_aso3_e" name="arsenite exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_aso3_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_aso3_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_asp__L_e" name="L Aspartate exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_asp__L_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_asp__L_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_but_e" name="Butyrate n C40 exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_but_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_but_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_butso3_e" name="butanesulfonate exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_butso3_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_butso3_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_ca2_e" name="Calcium exchange" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ca2_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ca2_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_cbi_e" name="Cobinamide exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_cbi_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cbi_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_cbl1_e" name="Cob I alamin exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_cbl1_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cbl1_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_cd2_e" name="Cadmium exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_cd2_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cd2_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_cgly_e" name="Cys Gly exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_cgly_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cgly_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_chol_e" name="Choline exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_chol_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_chol_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_cit_e" name="Citrate exchange" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_cit_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cit_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_icit_e" name="Isocitrate exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_icit_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_icit_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_acon__C_e" name="cisaconitate exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_acon__C_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_acon__C_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_cl_e" name="Chloride exchange" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_cl_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cl_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_cmp_e" name="CMP exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_cmp_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cmp_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_co2_e" name="CO2 exchange" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_co2_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_co2_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_cobalt2_e" name="Co2 exchange" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_cobalt2_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cobalt2_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_colipa_e" name="core oligosaccharide lipid A exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_colipa_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_colipa_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_cpgn_e" name="coprogen exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_cpgn_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cpgn_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_cpgn__un_e" name="coprogen unloaded no Fe III exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_cpgn__un_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cpgn__un_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_crn_e" name="L Carnitine exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_crn_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_crn_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_csn_e" name="Cytosine exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_csn_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_csn_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_cu2_e" name="Cu2 exchange" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_cu2_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cu2_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_cu_e" name="Cu exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_cu_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cu_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_cyan_e" name="Hydrogen cyanide exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_cyan_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cyan_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_cynt_e" name="Cyanate exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_cynt_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cynt_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_cys__D_e" name="D Cysteine exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_cys__D_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cys__D_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_cys__L_e" name="L Cysteine exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_cys__L_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cys__L_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_cysi__L_e" name="L Cystine exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_cysi__L_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cysi__L_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_cytd_e" name="Cytidine exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_cytd_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cytd_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_dad__2_e" name="Deoxyadenosine exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_dad__2_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_dad__2_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_damp_e" name="dAMP exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_damp_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_damp_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_dca_e" name="Decanoate n C100 exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_dca_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_dca_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_dcmp_e" name="dCMP exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_dcmp_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_dcmp_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_dcyt_e" name="Deoxycytidine exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_dcyt_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_dcyt_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_ddca_e" name="Dodecanoate n C120 exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ddca_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ddca_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_dgmp_e" name="dGMP exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_dgmp_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_dgmp_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_dgsn_e" name="Deoxyguanosine exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_dgsn_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_dgsn_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_dha_e" name="Dihydroxyacetone exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_dha_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_dha_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_dimp_e" name="dIMP exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_dimp_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_dimp_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_din_e" name="Deoxyinosine exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_din_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_din_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_dms_e" name="Dimethyl sulfide exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_dms_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_dms_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_dmso_e" name="Dimethyl sulfoxide exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_dmso_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_dmso_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_dopa_e" name="Dopamine exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_dopa_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_dopa_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_dtmp_e" name="dTMP exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_dtmp_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_dtmp_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_dump_e" name="dUMP exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_dump_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_dump_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_duri_e" name="Deoxyuridine exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_duri_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_duri_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_eca4colipa_e" name=" enterobacterial common antigen x4 core oligosaccharide lipid A exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_eca4colipa_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_eca4colipa_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_enlipa_e" name="phosphoethanolamine KDO 2 lipid A exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_enlipa_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_enlipa_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_enter_e" name="Enterochelin exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_enter_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_enter_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_etha_e" name="Ethanolamine exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_etha_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_etha_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_ethso3_e" name="ethanesulfonate exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ethso3_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ethso3_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_etoh_e" name="Ethanol exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_etoh_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_etoh_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_f6p_e" name="D fructose 6 phosphate exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_f6p_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_f6p_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_fald_e" name="Formaldehyde exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_fald_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_fald_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_fe2_e" name="Fe2 exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_fe2_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_fe2_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_fe3_e" name="Fe3 exchange" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_fe3_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_fe3_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_fe3dcit_e" name="Fe III dicitrate exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_fe3dcit_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_fe3dcit_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_fe3dhbzs_e" name="ferric 2 3 dihydroxybenzoylserine exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_fe3dhbzs_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_fe3dhbzs_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_fe3hox_e" name="Fe III hydroxamate exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_fe3hox_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_fe3hox_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_fe3hox__un_e" name="Fe III hydoxamate unloaded exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_fe3hox__un_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_fe3hox__un_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_fecrm_e" name="Ferrichrome exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_fecrm_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_fecrm_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_fecrm__un_e" name="Ferrichrome minus Fe III exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_fecrm__un_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_fecrm__un_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_feenter_e" name="Fe enterobactin exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_feenter_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_feenter_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_feoxam_e" name="ferroxamine exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_feoxam_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_feoxam_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_feoxam__un_e" name="ferroxamine minus Fe 3 exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_feoxam__un_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_feoxam__un_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_for_e" name="Formate exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_for_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_for_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_fru_e" name="D Fructose exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_fru_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_fru_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_frulys_e" name="fructoselysine exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_frulys_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_frulys_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_fruur_e" name="D Fructuronate exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_fruur_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_fruur_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_fuc__L_e" name="L Fucose exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_fuc__L_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_fuc__L_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_fum_e" name="Fumarate exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_fum_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_fum_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_g1p_e" name="D Glucose 1 phosphate exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_g1p_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_g1p_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_g3pc_e" name="sn Glycero 3 phosphocholine exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_g3pc_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_g3pc_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_g3pe_e" name="sn Glycero 3 phosphoethanolamine exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_g3pe_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_g3pe_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_g3pg_e" name="Glycerophosphoglycerol exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_g3pg_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_g3pg_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_g3pi_e" name="sn Glycero 3 phospho 1 inositol exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_g3pi_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_g3pi_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_g3ps_e" name="Glycerophosphoserine exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_g3ps_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_g3ps_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_g6p_e" name="D Glucose 6 phosphate exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_g6p_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_g6p_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_gal1p_e" name="alpha D Galactose 1 phosphate exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_gal1p_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_gal1p_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_gal__bD_e" name="beta D Galactose exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_gal__bD_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_gal__bD_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_gal_e" name="D Galactose exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_gal_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_gal_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_galct__D_e" name="D Galactarate exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_galct__D_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_galct__D_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_galctn__D_e" name="D Galactonate exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_galctn__D_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_galctn__D_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_galctn__L_e" name="L Galactonate exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_galctn__L_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_galctn__L_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_galt_e" name="Galactitol exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_galt_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_galt_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_galur_e" name="D Galacturonate exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_galur_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_galur_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_gam6p_e" name="D Glucosamine 6 phosphate exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_gam6p_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_gam6p_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_gam_e" name="D Glucosamine exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_gam_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_gam_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_gbbtn_e" name="gamma butyrobetaine exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_gbbtn_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_gbbtn_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_gdp_e" name="GDP exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_gdp_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_gdp_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_glc__D_e" name="D Glucose exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_glc__D_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glc__D_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_glcn_e" name="D Gluconate exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_glcn_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glcn_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_glcr_e" name="D Glucarate exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_glcr_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glcr_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_glcur1p_e" name="D Glucuronate 1 phosphate exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_glcur1p_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glcur1p_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_glcur_e" name="D Glucuronate exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_glcur_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glcur_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_gln__L_e" name="L Glutamine exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_gln__L_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_gln__L_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_glu__L_e" name="L Glutamate exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_glu__L_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glu__L_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_gly_e" name="Glycine exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_gly_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_gly_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_glyald_e" name="D Glyceraldehyde exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_glyald_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glyald_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_glyb_e" name="Glycine betaine exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_glyb_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glyb_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_glyc2p_e" name="Glycerol 2 phosphate exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_glyc2p_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glyc2p_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_glyc3p_e" name="Glycerol 3 phosphate exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_glyc3p_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glyc3p_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_glyc__R_e" name=" R Glycerate exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_glyc__R_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glyc__R_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_glyc_e" name="Glycerol exchange" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_glyc_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glyc_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_glyclt_e" name="Glycolate exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_glyclt_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glyclt_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_gmp_e" name="GMP exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_gmp_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_gmp_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_gsn_e" name="Guanosine exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_gsn_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_gsn_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_gthox_e" name="Oxidized glutathione exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_gthox_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_gthox_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_gthrd_e" name="Reduced glutathione exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_gthrd_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_gthrd_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_gtp_e" name="GTP exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_gtp_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_gtp_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_gua_e" name="Guanine exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_gua_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_gua_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_h2_e" name="H2 exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h2_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_h2o2_e" name="Hydrogen peroxide exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o2_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h2o2_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_h2o_e" name="H2O exchange" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h2o_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_h2s_e" name="Hydrogen sulfide exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2s_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h2s_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_h_e" name="H exchange" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_hacolipa_e" name="hepta acylated core oligosaccharide lipid A E coli exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_hacolipa_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_hacolipa_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_halipa_e" name="hepta acylated KDO 2 lipid A exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_halipa_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_halipa_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_hdca_e" name="Hexadecanoate n C160 exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_hdca_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_hdca_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_hdcea_e" name="hexadecenoate n C161 exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_hdcea_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_hdcea_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_hg2_e" name="Hg2 exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_hg2_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_hg2_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_his__L_e" name="L Histidine exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_his__L_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_his__L_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_hom__L_e" name="L Homoserine exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_hom__L_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_hom__L_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_hxa_e" name="Hexanoate n C60 exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_hxa_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_hxa_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_hxan_e" name="Hypoxanthine exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_hxan_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_hxan_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_idon__L_e" name="L Idonate exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_idon__L_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_idon__L_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_ile__L_e" name="L Isoleucine exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ile__L_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ile__L_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_imp_e" name="IMP exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_imp_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_imp_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_indole_e" name="Indole exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_indole_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_indole_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_inost_e" name="myo Inositol exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_inost_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_inost_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_ins_e" name="Inosine exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ins_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ins_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_isetac_e" name="Isethionic acid exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_isetac_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_isetac_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_k_e" name="K exchange" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_k_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_k_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_kdo2lipid4_e" name="KDO 2 lipid IV A exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_kdo2lipid4_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_kdo2lipid4_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_lac__D_e" name="D lactate exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_lac__D_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_lac__D_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_lac__L_e" name="L Lactate exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_lac__L_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_lac__L_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_lcts_e" name="Lactose exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_lcts_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_lcts_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_leu__L_e" name="L Leucine exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_leu__L_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_leu__L_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_lipa__cold_e" name="cold adapted KDO 2 lipid A exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_lipa__cold_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_lipa__cold_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_lipa_e" name="KDO 2 lipid A exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_lipa_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_lipa_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_lys__L_e" name="L Lysine exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_lys__L_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_lys__L_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_lyx__L_e" name="L Lyxose exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_lyx__L_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_lyx__L_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_mal__D_e" name="D Malate exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_mal__D_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_mal__D_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_mal__L_e" name="L Malate exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_mal__L_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_mal__L_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_malt_e" name="Maltose exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_malt_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_malt_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_malthx_e" name="Maltohexaose exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_malthx_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_malthx_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_maltpt_e" name="Maltopentaose exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_maltpt_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_maltpt_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_malttr_e" name="Maltotriose exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_malttr_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_malttr_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_maltttr_e" name="Maltotetraose exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_maltttr_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_maltttr_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_man6p_e" name="D Mannose 6 phosphate exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_man6p_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_man6p_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_man_e" name="D Mannose exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_man_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_man_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_manglyc_e" name="2 alpha D Mannosyl D glycerate exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_manglyc_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_manglyc_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_melib_e" name="Melibiose exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_melib_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_melib_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_met__D_e" name="D Methionine exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_met__D_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_met__D_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_met__L_e" name="L Methionine exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_met__L_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_met__L_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_metsox__R__L_e" name="L methionine R sulfoxide exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_metsox__R__L_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_metsox__R__L_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_metsox__S__L_e" name="L Methionine S oxide exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_metsox__S__L_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_metsox__S__L_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_mg2_e" name="Mg exchange" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_mg2_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_mg2_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_minohp_e" name="myo Inositol hexakisphosphate exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_minohp_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_minohp_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_mmet_e" name="S Methyl L methionine exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_mmet_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_mmet_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_mn2_e" name="Mn2 exchange" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_mn2_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_mn2_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_mnl_e" name="D Mannitol exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_mnl_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_mnl_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_mobd_e" name="Molybdate exchange" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_mobd_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_mobd_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_mso3_e" name="methanesulfonate exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_mso3_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_mso3_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_n2o_e" name="Nitrous oxide exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_n2o_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_n2o_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_na1_e" name="Sodium exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_na1_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_na1_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_nac_e" name="Nicotinate exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nac_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nac_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_nh4_e" name="Ammonia exchange" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nh4_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nh4_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_ni2_e" name="Ni2 exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ni2_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ni2_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_nmn_e" name="NMN exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nmn_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nmn_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_no2_e" name="Nitrite exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_no2_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_no2_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_no3_e" name="Nitrate exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_no3_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_no3_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_no_e" name="Nitric oxide exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_no_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_no_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_o2_e" name="O2 exchange" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_o2_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_o2_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_o2s_e" name="Superoxide anion exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_o2s_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_o2s_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_ocdca_e" name="octadecanoate n C180 exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ocdca_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ocdca_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_ocdcea_e" name="octadecenoate n C181 exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ocdcea_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ocdcea_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_octa_e" name="octanoate n C80 exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_octa_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_octa_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_orn_e" name="Ornithine exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_orn_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_orn_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_orot_e" name="Orotate exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_orot_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_orot_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_oaa_e" name="Oxaloacetate exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_oaa_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_oaa_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_pacald_e" name="Phenylacetaldehyde exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pacald_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pacald_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_peamn_e" name="Phenethylamine exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_peamn_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_peamn_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_phe__L_e" name="L Phenylalanine exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_phe__L_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_phe__L_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_pheme_e" name="Protoheme exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pheme_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pheme_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_pi_e" name="Phosphate exchange" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pi_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pi_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_pnto__R_e" name=" R Pantothenate exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pnto__R_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pnto__R_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_ppa_e" name="Propionate exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ppa_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ppa_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_ppal_e" name="Propanal exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ppal_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ppal_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_pppn_e" name="Phenylpropanoate exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pppn_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pppn_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_ppt_e" name="Phosphonate exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ppt_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ppt_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_pro__L_e" name="L Proline exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pro__L_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pro__L_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_progly_e" name="L Prolinylglycine exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_progly_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_progly_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_psclys_e" name="psicoselysine exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_psclys_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_psclys_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_pser__L_e" name="O Phospho L serine exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pser__L_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pser__L_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_ptrc_e" name="Putrescine exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ptrc_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ptrc_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_pyr_e" name="Pyruvate exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pyr_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pyr_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_r5p_e" name="alpha D Ribose 5 phosphate exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_r5p_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_r5p_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_rib__D_e" name="D Ribose exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_rib__D_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_rib__D_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_rmn_e" name="L Rhamnose exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_rmn_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_rmn_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_sbt__D_e" name="D Sorbitol exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_sbt__D_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_sbt__D_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_ser__D_e" name="D Serine exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ser__D_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ser__D_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_ser__L_e" name="L Serine exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ser__L_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ser__L_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_skm_e" name="Shikimate exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_skm_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_skm_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_so2_e" name="sulfur dioxide exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_so2_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_so2_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_so3_e" name="Sulfite exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_so3_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_so3_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_so4_e" name="Sulfate exchange" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_so4_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_so4_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_spmd_e" name="Spermidine exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_spmd_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_spmd_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_succ_e" name="Succinate exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_succ_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_succ_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_sucr_e" name="Sucrose exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_sucr_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_sucr_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_sulfac_e" name="sulfoacetate exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_sulfac_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_sulfac_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_tartr__L_e" name="L tartrate exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_tartr__L_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_tartr__L_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_taur_e" name="Taurine exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_taur_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_taur_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_tcynt_e" name="Thiocyanate exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_tcynt_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_tcynt_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_thm_e" name="Thiamin exchange" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_thm_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_thm_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_thr__L_e" name="L Threonine exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_thr__L_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_thr__L_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_thrp_e" name="L Threonine O 3 phosphate exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_thrp_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_thrp_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_thym_e" name="Thymine exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_thym_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_thym_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_thymd_e" name="Thymidine exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_thymd_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_thymd_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_tma_e" name="Trimethylamine exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_tma_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_tma_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_tmao_e" name="Trimethylamine N oxide exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_tmao_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_tmao_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_tre_e" name="Trehalose exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_tre_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_tre_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_trp__L_e" name="L Tryptophan exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_trp__L_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_trp__L_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_tsul_e" name="Thiosulfate exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_tsul_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_tsul_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_ttdca_e" name="tetradecanoate n C140 exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ttdca_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ttdca_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_ttdcea_e" name="tetradecenoate n C141 exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ttdcea_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ttdcea_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_tungs_e" name="tungstate exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_tungs_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_tungs_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_tym_e" name="Tyramine exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_tym_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_tym_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_tyr__L_e" name="L Tyrosine exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_tyr__L_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_tyr__L_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_tyrp_e" name="Phosphotyrosine exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_tyrp_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_tyrp_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_uacgam_e" name="UDP N acetyl D glucosamine exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_uacgam_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_uacgam_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_udpacgal_e" name="UDP N acetyl D galactosamine exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_udpacgal_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_udpacgal_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_udpg_e" name="UDPglucose exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_udpg_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_udpg_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_udpgal_e" name="UDPgalactose exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_udpgal_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_udpgal_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_udpglcur_e" name="UDP D glucuronate exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_udpglcur_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_udpglcur_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_ump_e" name="UMP exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ump_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ump_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_ura_e" name="Uracil exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ura_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ura_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_urea_e" name="Urea exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_urea_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_urea_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_uri_e" name="Uridine exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_uri_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_uri_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_val__L_e" name="L Valine exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_val__L_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_val__L_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_xan_e" name="Xanthine exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_xan_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_xan_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_xmp_e" name="Xanthosine 5 phosphate exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_xmp_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_xmp_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_xtsn_e" name="Xanthosine exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_xtsn_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_xtsn_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_xyl__D_e" name="D Xylose exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_xyl__D_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_xyl__D_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_xylu__L_e" name="L Xylulose exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_xylu__L_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_xylu__L_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_zn2_e" name="Zinc exchange" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_zn2_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_zn2_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_Ec_biomass_iAF1260_core_59p81M" name="E coli biomass objective function iAF1260 core with 5981 GAM estimate" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nad_c" stoichiometry="0.001831" constant="true"/>
- <speciesReference species="M_ala__L_c" stoichiometry="0.5137" constant="true"/>
- <speciesReference species="M_met__L_c" stoichiometry="0.1537" constant="true"/>
- <speciesReference species="M_mn2_c" stoichiometry="0.003158" constant="true"/>
- <speciesReference species="M_2ohph_c" stoichiometry="0.000223" constant="true"/>
- <speciesReference species="M_dgtp_c" stoichiometry="0.02702" constant="true"/>
- <speciesReference species="M_pe160_p" stoichiometry="0.04148" constant="true"/>
- <speciesReference species="M_dttp_c" stoichiometry="0.02617" constant="true"/>
- <speciesReference species="M_pe160_c" stoichiometry="0.02233" constant="true"/>
- <speciesReference species="M_kdo2lipid4_e" stoichiometry="0.01945" constant="true"/>
- <speciesReference species="M_sheme_c" stoichiometry="0.000223" constant="true"/>
- <speciesReference species="M_ile__L_c" stoichiometry="0.2905" constant="true"/>
- <speciesReference species="M_fe2_c" stoichiometry="0.007106" constant="true"/>
- <speciesReference species="M_gtp_c" stoichiometry="0.2151" constant="true"/>
- <speciesReference species="M_k_c" stoichiometry="0.1776" constant="true"/>
- <speciesReference species="M_arg__L_c" stoichiometry="0.2958" constant="true"/>
- <speciesReference species="M_ca2_c" stoichiometry="0.004737" constant="true"/>
- <speciesReference species="M_phe__L_c" stoichiometry="0.1759" constant="true"/>
- <speciesReference species="M_ser__L_c" stoichiometry="0.2158" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="54.462" constant="true"/>
- <speciesReference species="M_mg2_c" stoichiometry="0.007895" constant="true"/>
- <speciesReference species="M_gly_c" stoichiometry="0.6126" constant="true"/>
- <speciesReference species="M_pheme_c" stoichiometry="0.000223" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="59.984" constant="true"/>
- <speciesReference species="M_tyr__L_c" stoichiometry="0.1379" constant="true"/>
- <speciesReference species="M_leu__L_c" stoichiometry="0.4505" constant="true"/>
- <speciesReference species="M_cl_c" stoichiometry="0.004737" constant="true"/>
- <speciesReference species="M_thf_c" stoichiometry="0.000223" constant="true"/>
- <speciesReference species="M_coa_c" stoichiometry="0.000576" constant="true"/>
- <speciesReference species="M_utp_c" stoichiometry="0.1441" constant="true"/>
- <speciesReference species="M_murein5px4p_p" stoichiometry="0.01389" constant="true"/>
- <speciesReference species="M_his__L_c" stoichiometry="0.09474" constant="true"/>
- <speciesReference species="M_cobalt2_c" stoichiometry="0.003158" constant="true"/>
- <speciesReference species="M_pro__L_c" stoichiometry="0.2211" constant="true"/>
- <speciesReference species="M_pe161_c" stoichiometry="0.02632" constant="true"/>
- <speciesReference species="M_datp_c" stoichiometry="0.02617" constant="true"/>
- <speciesReference species="M_fad_c" stoichiometry="0.000223" constant="true"/>
- <speciesReference species="M_ctp_c" stoichiometry="0.1335" constant="true"/>
- <speciesReference species="M_udcpdp_c" stoichiometry="5.5e-05" constant="true"/>
- <speciesReference species="M_so4_c" stoichiometry="0.003948" constant="true"/>
- <speciesReference species="M_asn__L_c" stoichiometry="0.2411" constant="true"/>
- <speciesReference species="M_10fthf_c" stoichiometry="0.000223" constant="true"/>
- <speciesReference species="M_lys__L_c" stoichiometry="0.3432" constant="true"/>
- <speciesReference species="M_val__L_c" stoichiometry="0.4232" constant="true"/>
- <speciesReference species="M_mobd_c" stoichiometry="0.003158" constant="true"/>
- <speciesReference species="M_gln__L_c" stoichiometry="0.2632" constant="true"/>
- <speciesReference species="M_trp__L_c" stoichiometry="0.05684" constant="true"/>
- <speciesReference species="M_zn2_c" stoichiometry="0.003158" constant="true"/>
- <speciesReference species="M_thmpp_c" stoichiometry="0.000223" constant="true"/>
- <speciesReference species="M_dctp_c" stoichiometry="0.02702" constant="true"/>
- <speciesReference species="M_asp__L_c" stoichiometry="0.2411" constant="true"/>
- <speciesReference species="M_cys__L_c" stoichiometry="0.09158" constant="true"/>
- <speciesReference species="M_nadp_c" stoichiometry="0.000447" constant="true"/>
- <speciesReference species="M_ribflv_c" stoichiometry="0.000223" constant="true"/>
- <speciesReference species="M_glu__L_c" stoichiometry="0.2632" constant="true"/>
- <speciesReference species="M_pe161_p" stoichiometry="0.04889" constant="true"/>
- <speciesReference species="M_pydx5p_c" stoichiometry="0.000223" constant="true"/>
- <speciesReference species="M_amet_c" stoichiometry="0.000223" constant="true"/>
- <speciesReference species="M_nh4_c" stoichiometry="0.011843" constant="true"/>
- <speciesReference species="M_thr__L_c" stoichiometry="0.2537" constant="true"/>
- <speciesReference species="M_mlthf_c" stoichiometry="0.000223" constant="true"/>
- <speciesReference species="M_cu2_c" stoichiometry="0.003158" constant="true"/>
- <speciesReference species="M_fe3_c" stoichiometry="0.007106" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="59.81" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="0.7739" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="59.806" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="59.81" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_F6PA" name="fructose 6 phosphate aldolase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4109</p>
- <p>SUBSYSTEM: GlycolysisGluconeogenesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_f6p_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_g3p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dha_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_F6PP" name="D fructose 6 phosphate phosphatase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0840 or STM0842 )</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_f6p_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_fru_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_F6Pt6_2pp" name="Fructose 6 phosphate transport via phosphate antiport periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3787</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_f6p_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="2" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pi_p" stoichiometry="2" constant="true"/>
- <speciesReference species="M_f6p_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_F6Ptex" name="fructose 6 phosphate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_f6p_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_f6p_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FA100ACPHi" name="fatty acyl ACP hydrolase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0403</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dcaACP_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_dca_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FA120ACPHi" name="fatty acyl ACP hydrolase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0403</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ddcaACP_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ddca_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FA140ACPHi" name="fatty acyl ACP hydrolase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0403</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_myrsACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ttdca_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FA141ACPHi" name="fatty acyl ACP hydrolase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0403</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_tdeACP_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ttdcea_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FA160ACPHi" name="fatty acyl ACP hydrolase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0403</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_palmACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_hdca_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FA161ACPHi" name="fatty acyl ACP hydrolase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0403</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_hdeACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_hdcea_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FA80ACPHi" name="fatty acyl ACP hydrolase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0403</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ocACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_octa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FACOAE100" name="fatty acid CoA thioesterase decanoate " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0464</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dcacoa_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_dca_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FACOAE120" name="fatty acid CoA thioesterase dodecanoate " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0464</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ddcacoa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ddca_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FACOAE140" name="fatty acid CoA thioesterase tetradecanoate " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0464</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_tdcoa_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ttdca_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FACOAE141" name="fatty acid CoA thioesterase tetradecenoate " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0464</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_tdecoa_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ttdcea_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FACOAE160" name="fatty acid CoA thioesterase hexadecanoate " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0464</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pmtcoa_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_hdca_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FACOAE161" name="fatty acid CoA thioesterase hexadecenoate " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0464</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_hdcoa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_hdcea_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FACOAE180" name="fatty acid CoA thioesterase octadecanoate " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0464</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_stcoa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ocdca_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FACOAE181" name="fatty acid CoA thioesterase octadecenoate " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0464</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_odecoa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ocdcea_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FACOAE60" name="fatty acid CoA thioesterase hexanoate " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0464</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_hxcoa_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_hxa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FACOAE80" name="fatty acid CoA thioesterase octanoate " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0464</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_occoa_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_octa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FACOAL100t2pp" name="fatty acid CoA ligase decanoate transport via vectoral Co A coupling " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM1818 or STM1350 )</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dca_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dcacoa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FACOAL120t2pp" name="fatty acid CoA ligase dodecanoate transport via vectoral Co A coupling " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM1350 or STM1818 )</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ddca_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ddcacoa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FACOAL140t2pp" name="fatty acid CoA ligase tetradecanoate transport via vectoral Co A coupling " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM1818 or STM1350 )</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ttdca_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_tdcoa_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FACOAL141t2pp" name="fatty acid CoA ligase tetradecenoate transport via vectoral Co A coupling " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM1350 or STM1818 )</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ttdcea_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_tdecoa_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FACOAL160t2pp" name="fatty acid CoA ligase hexadecanoate transport via vectoral Co A coupling " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM1350 or STM1818 )</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_hdca_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pmtcoa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FACOAL161t2pp" name="fatty acid CoA ligase hexadecenoate transport via vectoral Co A coupling " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM1818 or STM1350 )</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_hdcea_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_hdcoa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FACOAL180t2pp" name="fatty acid CoA ligase octadecanoate transport via vectoral Co A coupling " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM1818 or STM1350 )</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ocdca_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_stcoa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FACOAL181t2pp" name="fatty acid CoA ligase octadecenoate transport via vectoral Co A coupling " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM1818 or STM1350 )</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ocdcea_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_odecoa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FACOAL60t2pp" name="fatty acid CoA ligase hexanoate transport via vectoral Co A coupling " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM1818 or STM1350 )</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_hxa_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_hxcoa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FACOAL80t2pp" name="fatty acid CoA ligase octanoate transport via vectoral Co A coupling " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM1818 or STM1350 )</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_octa_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_occoa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FADRx" name="FAD reductase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3979</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_fad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_fadh2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FADRx2" name="FAD reductase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2947 and STM2948 )</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fadh2_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FALDtex" name="formaldehyde transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_fald_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_fald_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FALDtpp" name="formaldehyde transport via diffusion periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: s0001</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_fald_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_fald_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FALGTHLs" name="formaldehyde glutathione ligase spontaneous " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: s0001</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_gthrd_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fald_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_hmgth_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FBA" name="fructose bisphosphate aldolase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2141 or STM3068 )</p>
- <p>SUBSYSTEM: GlycolysisGluconeogenesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_fdp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_g3p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dhap_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FBP" name="fructose bisphosphatase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM4085 or STM4415 )</p>
- <p>SUBSYSTEM: GlycolysisGluconeogenesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fdp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_f6p_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FCI" name="L fucose isomerase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2976</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_fuc__L_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_fcl__L_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FCLK" name="L fuculokinase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2977</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fcl__L_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fc1p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FCLPA" name="L fuculose 1 phosphate aldolase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2974 or STM2916 )</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_fc1p_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_dhap_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_lald__L_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FCLT" name="Ferrochelatase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0489</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ppp9_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fe2_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_pheme_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FDH4pp" name="formate dehydrogenase quinone 8 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( ( STM4035 and STM4036 and STM4037 ) or ( STM1570 and STM1569 and STM1568 ) )</p>
- <p>SUBSYSTEM: Oxidative Phosphorylation</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_q8_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_for_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_co2_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_q8h2_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FDH5pp" name="Formate Dehydrogenase menaquinone 8 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( ( STM1570 and STM1569 and STM1568 ) or ( STM4035 and STM4036 and STM4037 ) )</p>
- <p>SUBSYSTEM: Oxidative Phosphorylation</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_for_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_mqn8_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_mql8_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_co2_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FE2t2pp" name="iron II transport in via proton symport periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2408</p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_fe2_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_fe2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FE2tex" name="iron II transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_fe2_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_fe2_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FE2tpp" name="iron 2 transport in via permease no H " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3190</p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_fe2_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_fe2_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FE3DHBZR" name="release of Fe III from ferric 2 3 dihydroxybenzoylserine" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_fe3dhbzs_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_23dhbzs_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fe3_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FE3DHBZSabcpp" name="ferric 2 3 dihydroxybenzoylserine transport via ABC system periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0594 and STM0590 and STM0592 and STM0591 )</p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fe3dhbzs_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fe3dhbzs_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FE3DHBZStonex" name="ferric 2 3 dihydroxybenzoylserine transport via ton system extracellular " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2199 and ( STM1737 and STM3158 and STM3159 ) )</p>
- <p>SUBSYSTEM: Transport Outer Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fe3dhbzs_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_fe3dhbzs_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FE3HOXR1" name="Fe III hydroxamate reductase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_fe3hox_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_fadh2_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_fad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fe2_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_fe3hox__un_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FE3HOXR2" name="Fe III hydroxamate reductase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_fmnh2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fe3hox_c" stoichiometry="2" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_fmn_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fe2_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_fe3hox__un_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FE3HOXR3" name="Fe III hydroxamate reductase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_rbflvrd_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fe3hox_c" stoichiometry="2" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ribflv_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fe2_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_fe3hox__un_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FE3HOXUtex" name="Fe III hydroxamate unloaded secretion" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fe3hox__un_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fe3hox__un_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FE3HOXUtpp" name="Fe III hydroxamate unloaded secretion extracellular " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fe3hox__un_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_fe3hox__un_e" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FE3HOXexs" name="Fe III hydroxamate Fe loading reaction spontaneaous " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: s0001</p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_fe3_e" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fe3hox__un_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_fe3hox_e" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FE3HOXtonex" name="Fe III hydroxamine transport via ton system extracellular " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0191 and ( STM1737 and STM3158 and STM3159 ) )</p>
- <p>SUBSYSTEM: Transport Outer Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_fe3hox_e" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_fe3hox_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FE3Ri" name="Fe III reduction" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3979</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_fadh2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fe3_c" stoichiometry="2" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_fe2_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_fad_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FE3tex" name="iron III transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_fe3_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_fe3_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FECRMR1" name="Ferrichrome reductase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_fecrm_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_fadh2_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_fecrm__un_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_fad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fe2_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FECRMR2" name="Ferrichrome reductase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_fecrm_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_fmnh2_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_fecrm__un_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_fe2_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_fmn_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FECRMR3" name="Ferrichrome reductase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_fecrm_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_rbflvrd_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_fecrm__un_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_fe2_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_ribflv_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FECRMUtex" name="ferrichrome minus Fe secretion to extracellular " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_fecrm__un_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fecrm__un_e" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FECRMUtpp" name="ferrichrome minus Fe secretion to periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_fecrm__un_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fecrm__un_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FECRMabcpp" name="ferrichrome transport via ABC system periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0194 and STM0192 and STM0193 )</p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_fecrm_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fecrm_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FECRMexs" name="ferrichrome Fe III loading reaction spontaneous " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: s0001</p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_fecrm__un_e" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fe3_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_fecrm_e" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FECRMtonex" name="ferrichrome transport via ton system extracellular " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0191 and ( STM1737 and STM3158 and STM3159 ) )</p>
- <p>SUBSYSTEM: Transport Outer Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_fecrm_e" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_fecrm_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FEENTERabcpp" name="Fe enterobactin transport via ABC system periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0594 and STM0590 and STM0592 and STM0591 )</p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_feenter_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_feenter_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FEENTERexs" name="enterobactin Fe III binding spontaneous " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: s0001</p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_fe3_e" stoichiometry="1" constant="true"/>
- <speciesReference species="M_enter_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_feenter_e" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FEENTERtonex" name="Fe enterobactin transport via ton system extracellular " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0585 and ( STM1737 and STM3158 and STM3159 ) )</p>
- <p>SUBSYSTEM: Transport Outer Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_feenter_e" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_feenter_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FEENTERtpp" name="enterochelin transport secretion " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0593</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_enter_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_enter_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FEOXAMUtex" name="ferroxamine minus Fe3 secretion to extracellular " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_feoxam__un_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_feoxam__un_e" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FEOXAMUtpp" name="ferroxamine minus Fe3 secretion to periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_feoxam__un_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_feoxam__un_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FEOXAMabcpp" name="ferroxamine transport via ABC system periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0194 and STM0192 and STM0193 )</p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_feoxam_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_feoxam_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FEOXAMexs" name="ferroxamine Fe3 loading reaction spontaneous " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: s0001</p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_fe3_e" stoichiometry="1" constant="true"/>
- <speciesReference species="M_feoxam__un_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_feoxam_e" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FEOXAMtonex" name="ferroxamine transport via ton system extracellular " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0191 and ( STM1737 and STM3158 and STM3159 ) )</p>
- <p>SUBSYSTEM: Transport Outer Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_feoxam_e" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_feoxam_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FEROpp" name="ferroxidase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0168</p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_o2_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fe2_p" stoichiometry="4" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="4" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_fe3_p" stoichiometry="4" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FHL" name="Formate hydrogen lyase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM4285 and ( STM2847 and STM2848 and STM2849 and STM2850 and STM2851 and STM2852 ) )</p>
- <p>SUBSYSTEM: Pyruvate Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_for_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FLDR" name="flavodoxin reductase NADPH " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( ( STM0694 and STM4084 ) or ( STM3045 and STM4084 ) )</p>
- <p>SUBSYSTEM: Unassigned</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fldox_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fldrd_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FLVR" name="flavin reductase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( ( STM2947 and STM2948 ) or STM3979 )</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ribflv_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_rbflvrd_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FLVRx" name="flavin reductase NAD " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3979</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ribflv_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_rbflvrd_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FMETTRS" name="Methionyl tRNA formyltransferase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3407</p>
- <p>SUBSYSTEM: tRNA Charging</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_10fthf_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_mettrna_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_thf_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fmettrna_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FMNAT" name="FMN adenylyltransferase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0045</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_fmn_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fad_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FMNRx" name="FMN reductase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3979</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_fmn_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_fmnh2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FMNRx2" name="FMN reductase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( ( STM2947 and STM2948 ) or STM3979 )</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_fmn_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_fmnh2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FORt2pp" name="formate transport via proton symport uptake only periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0974</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_for_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_for_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FORtex" name="formate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_for_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_for_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FORtppi" name="formate transport via diffusion cytoplasm to periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0974</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_for_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_for_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FRD2" name="fumarate reductase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM4340 and STM4341 and STM4342 and STM4343 )</p>
- <p>SUBSYSTEM: Citric Acid Cycle</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_mql8_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fum_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_mqn8_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_succ_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FRD3" name="fumarate reductase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM4340 and STM4341 and STM4342 and STM4343 )</p>
- <p>SUBSYSTEM: Citric Acid Cycle</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_2dmmql8_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fum_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_2dmmq8_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_succ_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FRUK" name="fructose 1 phosphate kinase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2205</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_f1p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fdp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FRULYStex" name="fructoselysine transporter via diffusion extracellular " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_frulys_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_frulys_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FRUURtex" name="D fructuronate transport via diffusion extracellular " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_fruur_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_fruur_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FRUpts2pp" name="Fructose transport via PEPPyr PTS f6p generating periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM1830 and STM1831 and STM1832 and STM2431 and STM2432 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_fru_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pep_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_f6p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FRUptspp" name="D fructose transport via PEPPyr PTS periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2204 and STM2206 and STM2431 and STM2432 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_fru_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pep_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_f1p_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FRUtex" name="D fructose transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_fru_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_fru_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FTHFD" name="formyltetrahydrofolate deformylase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1756</p>
- <p>SUBSYSTEM: Folate Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_10fthf_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_for_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_thf_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FUCtex" name="L fucose transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_fuc__L_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_fuc__L_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FUCtpp" name="L fucose transport via proton symport periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: s0001</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fuc__L_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fuc__L_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FUM" name="fumarase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM1468 or STM4300 or STM1469 or ( STM0761 and STM0762 ) )</p>
- <p>SUBSYSTEM: Citric Acid Cycle</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fum_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_mal__L_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FUMt2_2pp" name="Fumarate transport via proton symport 2 H periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3614</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="2" constant="true"/>
- <speciesReference species="M_fum_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_fum_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FUMtex" name="Fumarate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_fum_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_fum_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_G1PACT" name="glucosamine 1 phosphate N acetyltransferase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3862</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_accoa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gam1p_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_acgam1p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_G1PPpp" name="Glucose 1 phosphatase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1117</p>
- <p>SUBSYSTEM: GlycolysisGluconeogenesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_g1p_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glc__D_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_G1PTT" name="glucose 1 phosphate thymidylyltransferase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3923 or STM2095 )</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_g1p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dttp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_dtdpglu_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_G1Ptex" name="D glucose 1 phosphate transport via diffusion" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_g1p_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_g1p_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_G1SAT" name="glutamate 1 semialdehyde aminotransferase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0202</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_glu1sa_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_5aop_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_G2PPpp" name="glycerol 2 phosphate phosphatase periplasmic " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4249</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_glyc2p_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glyc_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_G3PAT120" name="glycerol 3 phosphate acyltransferase C120 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4235</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_glyc3p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ddcaACP_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_1ddecg3p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_G3PAT140" name="glycerol 3 phosphate acyltransferase C140 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4235</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_myrsACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glyc3p_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_1tdecg3p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_G3PAT141" name="glycerol 3 phosphate acyltransferase C141 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4235</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_glyc3p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_tdeACP_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_1tdec7eg3p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_G3PAT160" name="glycerol 3 phosphate acyltransferase C160 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4235</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_glyc3p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_palmACP_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_1hdecg3p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_G3PAT161" name="glycerol 3 phosphate acyltransferase C161 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4235</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_hdeACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glyc3p_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_1hdec9eg3p_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_G3PAT180" name="glycerol 3 phosphate acyltransferase C180 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4235</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ocdcaACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glyc3p_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_1odecg3p_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_G3PAT181" name="glycerol 3 phosphate acyltransferase C181 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4235</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_octeACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glyc3p_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_1odec11eg3p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_G3PCabcpp" name="sn glycerol 3 phosphocholine transport via ABC system periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3556 and STM3557 and STM3554 and STM3555 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_g3pc_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_g3pc_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_G3PCtex" name="glycero 3 phosphocholine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_g3pc_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_g3pc_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_G3PD2" name="glycerol 3 phosphate dehydrogenase NADP " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3700</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_glyc3p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_dhap_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_G3PD5" name="glycerol 3 phosphate dehydrogenase ubiquinone 8 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( ( STM2284 and STM2285 and STM2286 ) or STM3526 )</p>
- <p>SUBSYSTEM: Oxidative Phosphorylation</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_glyc3p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_q8_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_dhap_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_q8h2_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_G3PD6" name="glycerol 3 phosphate dehydrogenase menaquinone 8 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2284 and STM2285 and STM2286 )</p>
- <p>SUBSYSTEM: Oxidative Phosphorylation</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_mqn8_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glyc3p_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_mql8_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dhap_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_G3PD7" name="glycerol 3 phosphate dehydrogenase demethylmenaquinone 8 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2284 and STM2285 and STM2286 )</p>
- <p>SUBSYSTEM: Oxidative Phosphorylation</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_glyc3p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2dmmq8_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_2dmmql8_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dhap_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_G3PEabcpp" name="sn glycerol 3 phosphoethanolamine transport via ABC system periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3556 and STM3557 and STM3554 and STM3555 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_g3pe_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_g3pe_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_G3PEtex" name="glycero 3 phosphoethanolamine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_g3pe_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_g3pe_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_G3PGabcpp" name="sn glycerol 3 phosphoglycerol transport via ABC system periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3556 and STM3557 and STM3554 and STM3555 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_g3pg_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_g3pg_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_G3PGtex" name="glycerophoglycerol transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_g3pg_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_g3pg_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_G3PIabcpp" name="sn glycerol 3 phosphoethanolamine transport via ABC system periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3556 and STM3557 and STM3554 and STM3555 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_g3pi_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_g3pi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_G3PItex" name="glycero 3 phospho 1 inositol transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_g3pi_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_g3pi_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_G3PSabcpp" name="sn glycerol 3 phosphoserine transport via ABC system periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3556 and STM3557 and STM3554 and STM3555 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_g3ps_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_g3ps_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_G3PStex" name="glycerophosphserine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_g3ps_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_g3ps_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_G3PT" name="glycerol 3 phosphatase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0840 or STM0842 )</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glyc3p_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glyc_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_G5SADs" name="L glutamate 5 semialdehyde dehydratase spontaneous " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: s0001</p>
- <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_glu5sa_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_1pyr5c_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_G5SD" name="glutamate 5 semialdehyde dehydrogenase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0322</p>
- <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_glu5p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glu5sa_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_G6PDA" name="glucosamine 6 phosphate deaminase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0684</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_gam6p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nh4_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_f6p_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_G6PDH2r" name="glucose 6 phosphate dehydrogenase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1886</p>
- <p>SUBSYSTEM: Pentose Phosphate Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_g6p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_6pgl_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_G6PP" name="glucose 6 phosphate phosphatase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0840 or STM0842 )</p>
- <p>SUBSYSTEM: GlycolysisGluconeogenesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_g6p_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glc__D_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_G6Pt6_2pp" name="Glucose 6 phosphate transport via phosphate antiport periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3787</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_g6p_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="2" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_g6p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_p" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_G6Ptex" name="glucose 6 phosphate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_g6p_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_g6p_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GAL1PPpp" name="D galactose 1 phosphatase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1117</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gal1p_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_gal_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GAL1Ptex" name="D galactose 1 phosphate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_gal1p_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_gal1p_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GALBDtex" name="beta D galactose transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_gal__bD_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_gal__bD_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GALCTNLtex" name="L galactonate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2267 or STM1473 or STM0999 or STM0320 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_galctn__L_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_galctn__L_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GALCTNt2pp" name="D galactonate transport via proton symport periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3827</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_galctn__D_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_galctn__D_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GALCTNtex" name="D galactonate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_galctn__D_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_galctn__D_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GALCTt2rpp" name="D galactarte transport via proton symport reversible periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2962</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_galct__D_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_galct__D_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GALCTtex" name="D galactarte transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_galct__D_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_galct__D_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GALKr" name="galactokinase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0774 or STM2101 )</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gal_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gal1p_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GALM2pp" name="aldose 1 epimerase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0773</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_gal__bD_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_gal_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GALS3" name="a galactosidase melibiose " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4298</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_melib_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glc__D_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gal_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GALT1" name="galactosyltransferase I LPS core synthesis " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3719</p>
- <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_gicolipa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udpg_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_gagicolipa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GALTtex" name="Galactitol transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_galt_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_galt_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GALURt2rpp" name="D galacturonate transport via proton symport reversible periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3134</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_galur_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_galur_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GALURtex" name="D galacturonate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_galur_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_galur_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GALUi" name="UTP glucose 1 phosphate uridylyltransferase irreversible " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM1752 and STM2098 )</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_g1p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_utp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_udpg_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GALabcpp" name="D galactose transport via ABC system periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2189 and STM2190 and STM2188 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_gal_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gal_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GALt2pp" name="D galactose transport in via proton symport periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3091</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gal_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_gal_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GALtex" name="D galactose transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_gal_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_gal_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GAM6Pt6_2pp" name="D Glucosamine 6 phosphate transport via phosphate antiport periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3787</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pi_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_gam6p_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_gam6p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_p" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GAMAN6Ptex" name="D glucosamine 6 phosphate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_gam6p_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_gam6p_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GAMptspp" name="D glucosamine transport via PEPPyr PTS periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM1830 and STM1831 and STM1832 and STM2431 and STM2432 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_gam_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pep_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_gam6p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GAMtex" name="D glucosamine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_gam_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_gam_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GAPD" name="glyceraldehyde 3 phosphate dehydrogenase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1290</p>
- <p>SUBSYSTEM: GlycolysisGluconeogenesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_g3p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_13dpg_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GARFT" name="phosphoribosylglycinamide formyltransferase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2500</p>
- <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_10fthf_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gar_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_thf_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fgam_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GART" name="GAR transformylase T" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1883</p>
- <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_for_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gar_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fgam_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GBBTNtex" name="gamma butyrobetaine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_gbbtn_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_gbbtn_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GDMANE" name="GDP 4 dehydro 6 deoxy D mannose epimerase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2108</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_gdpddman_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_gdpofuc_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GDPDPK" name="GDP diphosphokinase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2956 or STM3742 )</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gdp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppgpp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GDPMNH" name="GDP mannose mannosyl hydrolase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2107</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gdpmann_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_man_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gdp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GDPMNP" name="GDP mannose phyrophosphatase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2477</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gdpmann_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_man1p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gmp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GDPtex" name="GDP transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM1473 or STM2267 or STM0999 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_gdp_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_gdp_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GF6PTA" name="glutamine fructose 6 phosphate transaminase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3861</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_f6p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gln__L_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gam6p_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GHMT2r" name="glycine hydroxymethyltransferase reversible" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2555</p>
- <p>SUBSYSTEM: Glycine and Serine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ser__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_thf_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_mlthf_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gly_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GK1" name="guanylate kinase GMPATP " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3740</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_gmp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gdp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GLBRAN2" name="1 4 alpha glucan branching enzyme glycogen bglycogen " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3538</p>
- <p>SUBSYSTEM: GlycolysisGluconeogenesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_glycogen_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_bglycogen_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GLCATr" name="D glucose O acetyltransferase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0472</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_glc__D_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_accoa_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_acglc__D_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GLCDpp" name="Glucose dehydrogenase ubiquinone 8 as acceptor periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0169 )</p>
- <p>SUBSYSTEM: Oxidative Phosphorylation</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_q8_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glc__D_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glcn_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_q8h2_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GLCNt2rpp" name="D gluconate transport via proton symport reversible periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3512 or STM4482 or STM3541 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_glcn_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glcn_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GLCNtex" name="D gluconate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_glcn_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glcn_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GLCP" name="glycogen phosphorylase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3534 or STM3514 )</p>
- <p>SUBSYSTEM: GlycolysisGluconeogenesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_glycogen_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_g1p_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GLCP2" name="glycogen phosphorylase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3514 or STM3534 )</p>
- <p>SUBSYSTEM: GlycolysisGluconeogenesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_bglycogen_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_g1p_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GLCRAL" name="5 dehydro 4 deoxyglucarate aldolase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3249</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_5dh4dglc_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2h3oppan_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GLCRD" name="glucarate dehydratase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2960 or STM2961 )</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_glcr_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_5dh4dglc_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GLCRt2rpp" name="D glucarate transport via proton symport reversible periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2962</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_glcr_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glcr_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GLCRtex" name="D glucarate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_glcr_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glcr_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GLCS1" name="glycogen synthase ADPGlc " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3535</p>
- <p>SUBSYSTEM: GlycolysisGluconeogenesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_adpglc_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glycogen_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GLCTR1" name="glucosyltransferase I LPS core synthesis " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3722</p>
- <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_udpg_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_icolipa_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_udp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gicolipa_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GLCTR2" name="glucosyltransferase II LPS core synthesis " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3718</p>
- <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_gagicolipa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udpg_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ggagicolipa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GLCTR3" name="glucosyltransferase III LPS core synthesis " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3717</p>
- <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_udpg_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ggagicolipa_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_udp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gggagicolipa_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GLCUR1Ptex" name="D glucuronate 1 phosphate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_glcur1p_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glcur1p_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GLCURt2rpp" name="D glucuronate transport via proton symport reversible periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3134 or STM0161 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glcur_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glcur_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GLCURtex" name="D glucuronat transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_glcur_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glcur_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GLCabcpp" name="D glucose transport via ABC system periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2189 and STM2190 and STM2188 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_glc__D_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glc__D_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GLCptspp" name="D glucose transport via PEPPyr PTS periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( ( STM2433 and STM1203 and STM2431 and STM2432 ) or ( STM1830 and STM1831 and STM1832 and STM2431 and STM2432 ) or ( STM2433 and STM2431 and STM2432 ) )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pep_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glc__D_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_g6p_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GLCt2pp" name="D glucose transport in via proton symport periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3091</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glc__D_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glc__D_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GLCtex" name="glucose transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_glc__D_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glc__D_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GLCtexi" name="D glucoseMaltotriose transport via diffusion extracellular to periplasm irreversible" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4231</p>
- <p>SUBSYSTEM: Transport Outer Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_glc__D_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glc__D_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GLDBRAN2" name="glycogen debranching enzyme bglycogen glycogen " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3537</p>
- <p>SUBSYSTEM: GlycolysisGluconeogenesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_bglycogen_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glycogen_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GLGC" name="glucose 1 phosphate adenylyltransferase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3536</p>
- <p>SUBSYSTEM: GlycolysisGluconeogenesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_g1p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adpglc_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GLNS" name="glutamine synthetase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4007</p>
- <p>SUBSYSTEM: Glutamate metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nh4_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gln__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GLNTRS" name="Glutaminyl tRNA synthetase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0686</p>
- <p>SUBSYSTEM: tRNA Charging</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_trnagln_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gln__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glntrna_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GLNabcpp" name="L glutamine transport via ABC system periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0830 and STM0829 and STM0828 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gln__L_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_gln__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GLNtex" name="L glutamine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0999 or STM1473 or STM2267 or STM0320 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_gln__L_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_gln__L_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GLU5K" name="glutamate 5 kinase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0321</p>
- <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glu5p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GLUCYS" name="gamma glutamylcysteine synthetase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2818</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cys__L_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glucys_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GLUDy" name="glutamate dehydrogenase NADP " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1299</p>
- <p>SUBSYSTEM: Glutamate Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nh4_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_akg_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GLUN" name="glutaminase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1525</p>
- <p>SUBSYSTEM: Glutamate Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gln__L_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nh4_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GLUNpp" name="glutaminase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3106</p>
- <p>SUBSYSTEM: Glutamate Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_gln__L_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glu__L_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nh4_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GLUPRT" name="glutamine phosphoribosyldiphosphate amidotransferase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2362</p>
- <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_prpp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gln__L_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pram_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GLUR" name="glutamate racemase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4131</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_glu__D_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GLUSy" name="glutamate synthase NADPH " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3330 and STM3331 )</p>
- <p>SUBSYSTEM: Glutamate metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_akg_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gln__L_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glu__L_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GLUTRR" name="glutamyl tRNA reductase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1777</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glutrna_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_trnaglu_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glu1sa_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GLUTRS" name="Glutamyl tRNA synthetase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2415</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_trnaglu_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glutrna_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GLUabcpp" name="L glutamate transport via ABC system periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0665 and STM0664 and STM0663 and STM0662 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_glu__L_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GLUt2rpp" name="L glutamate transport via proton symport reversible periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4283</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glu__L_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GLUt4pp" name="Naglutamate symport periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3746</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_glu__L_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_na1_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_na1_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GLUtex" name="L glutamate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_glu__L_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glu__L_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GLXCL" name="glyoxalate carboligase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0517</p>
- <p>SUBSYSTEM: Glyoxylate Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glx_c" stoichiometry="2" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_2h3oppan_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GLYALDtex" name="Glyceraldehyde transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_glyald_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glyald_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GLYALDtpp" name="Glyceraldehyde facilitated diffusion periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4087</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_glyald_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glyald_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GLYAT" name="glycine C acetyltransferase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3709</p>
- <p>SUBSYSTEM: Glycine and Serine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_gly_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_accoa_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_2aobut_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GLYBabcpp" name="Glycine betaine transport via ABC system periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2162 and STM2163 and STM2164 and STM2165 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_glyb_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glyb_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GLYBtex" name="Glycine betaine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_glyb_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glyb_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GLYC2Ptex" name="Glycerol 2 phosphate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_glyc2p_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glyc2p_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GLYC3Pabcpp" name="sn Glycerol 3 phosphate transport via ABC system periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3556 and STM3557 and STM3554 and STM3555 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glyc3p_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glyc3p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GLYC3Pt6pp" name="Glycerol 3 phosphate phosphate antiporter periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2283</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glyc3p_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glyc3p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GLYC3Ptex" name="Glycerol 3 phosphate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_glyc3p_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glyc3p_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GLYCAt2rpp" name="D glycerate transport via proton symport reversible periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2962</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_glyc__R_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glyc__R_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GLYCAtex" name="D glycerate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_glyc__R_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glyc__R_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GLYCDx" name="Glycerol dehydrogenase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM4108 or STM3529 )</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glyc_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dha_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GLYCK" name="glycerate kinase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2959 or STM2492 or STM3247 or STM0525 )</p>
- <p>SUBSYSTEM: Glyoxylate Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glyc__R_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_3pg_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GLYCK2" name="glycerate kinase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3247</p>
- <p>SUBSYSTEM: Glycine and Serine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glyc__R_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2pg_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GLYCL" name="Glycine Cleavage System" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3054 and STM3053 and STM3055 and STM0154 )</p>
- <p>SUBSYSTEM: Folate Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_thf_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gly_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_mlthf_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nh4_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GLYCLTDx" name="Glycolate dehydrogenase NAD " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3646 or STM1135 )</p>
- <p>SUBSYSTEM: Glyoxylate Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_glx_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glyclt_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GLYCLTDy" name="Glycolate dehydrogenase NADP " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3646 or STM1135 )</p>
- <p>SUBSYSTEM: Glyoxylate Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glx_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glyclt_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GLYCLTt2rpp" name="glycolate transport via proton symport reversible periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3692</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glyclt_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glyclt_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GLYCLTt4pp" name="glycolate transport via sodium symport periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4273</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_na1_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glyclt_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_na1_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glyclt_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GLYCLTtex" name="glycolate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_glyclt_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glyclt_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GLYCTO2" name="Glycolate oxidase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1620</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_glyclt_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_q8_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glx_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_q8h2_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GLYCTO3" name="Glycolate oxidase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1620</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_glyclt_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_mqn8_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glx_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_mql8_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GLYCTO4" name="Glycolate oxidase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1620</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_2dmmq8_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glyclt_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glx_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2dmmql8_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GLYCtex" name="glycerol transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_glyc_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glyc_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GLYCtpp" name="glycerol transport via channel periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( s0001 or STM4087 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_glyc_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glyc_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GLYK" name="glycerol kinase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4086</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_glyc_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glyc3p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GLYOX" name="hydroxyacylglutathione hydrolase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0261</p>
- <p>SUBSYSTEM: Methylglyoxal Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_lgt__S_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_lac__D_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gthrd_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GLYOX3" name="glyoxalase III" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Methylglyoxal Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_mthgxl_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_lac__D_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GLYTRS" name="Glycyl tRNA synthetase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3655 and STM3656 )</p>
- <p>SUBSYSTEM: tRNA Charging</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_gly_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_trnagly_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glytrna_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GLYt2pp" name="glycine transport in via proton symport periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4398</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gly_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_gly_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GLYtex" name="Glycine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_gly_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_gly_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GMAND" name="GDP D mannose dehydratase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2109</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_gdpmann_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_gdpddman_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GMHEPAT" name="D glycero D manno hepose 1 phosphate adenyltransferase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3200</p>
- <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_gmhep1p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adphep__DD_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GMHEPK" name="D glycero D manno heptose 7 phosphate kinase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3200</p>
- <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_gmhep7p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gmhep17bp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GMHEPPA" name="D glycero D manno heptose 1 7 bisphosphate phosphatase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0248</p>
- <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gmhep17bp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_gmhep1p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GMPR" name="GMP reductase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0141</p>
- <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_gmp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_imp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nh4_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GMPS2" name="GMP synthase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2510</p>
- <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_xmp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gln__L_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_gmp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GMPtex" name="GMP transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_gmp_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_gmp_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GND" name="phosphogluconate dehydrogenase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2081</p>
- <p>SUBSYSTEM: Pentose Phosphate Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_6pgc_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ru5p__D_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GNK" name="gluconokinase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM4485 or STM3542 )</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glcn_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_6pgc_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GOFUCR" name="GDP 4 oxo L fucose reductase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2108</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_gdpofuc_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gdpfuc_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GPDDA1" name="Glycerophosphodiester phosphodiesterase Glycerophosphocholine " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3553</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_g3pc_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glyc3p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_chol_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GPDDA1pp" name="Glycerophosphodiester phosphodiesterase Glycerophosphocholine " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2282</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_g3pc_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_chol_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glyc3p_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GPDDA2" name="Glycerophosphodiester phosphodiesterase Glycerophosphoethanolamine " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3553</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_g3pe_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glyc3p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_etha_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GPDDA2pp" name="Glycerophosphodiester phosphodiesterase Glycerophosphoethanolamine " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2282</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_g3pe_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_etha_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glyc3p_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GPDDA3" name="Glycerophosphodiester phosphodiesterase Glycerophosphoserine " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3553</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_g3ps_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glyc3p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ser__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GPDDA3pp" name="Glycerophosphodiester phosphodiesterase Glycerophosphoserine " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2282</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_g3ps_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ser__L_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glyc3p_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GPDDA4" name="Glycerophosphodiester phosphodiesterase Glycerophosphoglycerol " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3553</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_g3pg_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glyc3p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glyc_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GPDDA4pp" name="Glycerophosphodiester phosphodiesterase Glycerophosphoglycerol " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2282</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_g3pg_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glyc_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glyc3p_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GPDDA5" name="Glycerophosphodiester phosphodiesterase Glycerophosphoinositol " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3553</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_g3pi_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glyc3p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_inost_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GPDDA5pp" name="Glycerophosphodiester phosphodiesterase Glycerophosphoinositol " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2282</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_g3pi_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glyc3p_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_inost_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GRTT" name="geranyltranstransferase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0423</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ipdp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_grdp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_frdp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GRXR" name="glutaredoxin reductase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3702 or STM0872 or STM1433 or STM1165 )</p>
- <p>SUBSYSTEM: Unassigned</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_grxox_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gthrd_c" stoichiometry="2" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_gthox_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_grxrd_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GSNK" name="guanosine kinase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0491</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gsn_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_gmp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GSNt2pp" name="guanosine transport in via proton symport periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3113</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gsn_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_gsn_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GSNtex" name="guanosine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_gsn_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_gsn_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GSPMDA" name="Glutathionylspermidine amidase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3139</p>
- <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_gtspmd_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_gthrd_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_spmd_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GSPMDS" name="Glutathionylspermidine synthetase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3139</p>
- <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_spmd_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gthrd_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gtspmd_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GTHOXtex" name="glutathione ox transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_gthox_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_gthox_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GTHOr" name="glutathione oxidoreductase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3597</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_gthox_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gthrd_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GTHRDHpp" name="glutathione hydralase periplasmic " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3551</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_gthrd_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cgly_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glu__L_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GTHRDabc2pp" name="glutathione export via ABC system cytoplasm to periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0956 and STM0957 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gthrd_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gthrd_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GTHRDabcpp" name="Reduced glutathione via ABC system periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0848 and STM0849 and STM0850 and STM0851 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gthrd_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_gthrd_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GTHRDtex" name="glutathione transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_gthrd_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_gthrd_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GTHS" name="glutathione synthetase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3095</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_gly_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glucys_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gthrd_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GTPCI" name="GTP cyclohydrolase I" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2193</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gtp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_for_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ahdt_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GTPCII2" name="GTP cyclohydrolase II 25drapp " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1711</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="3" constant="true"/>
- <speciesReference species="M_gtp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_25drapp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_for_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GTPDPDP" name="guanosine 5 triphosphate 3 diphosphate diphosphatase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3913</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_gdptp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ppgpp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GTPDPK" name="GTP diphosphokinase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2956</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gtp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_gdptp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GTPHs" name="GTP amine hydrolysis spontaneous " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: s0001</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gtp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_xtp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nh4_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GTPtex" name="GTP transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_gtp_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_gtp_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GUAPRT" name="guanine phosphoribosyltransferase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0317 or STM0170 )</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_prpp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gua_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gmp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GUAt2pp" name="guanine transport in via proton symport periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3747</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_gua_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gua_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GUAtex" name="Guanine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0413</p>
- <p>SUBSYSTEM: Transport Outer Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_gua_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_gua_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GUAtpp" name="Guanine transport via diffusion periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_gua_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_gua_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GUR1PPpp" name="Glucuronate 1 phosphate phosphatase periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_glcur1p_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glcur_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_H2O2tex" name="hydrogen peroxide transport via diffusion external " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o2_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h2o2_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_H2Otex" name="H2O transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM1473 or STM0999 or STM2267 or STM0320 or s0001 or STM4016 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_H2Otpp" name="H2O transport via diffusion periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: s0001</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_H2SO" name="Hydrogen sulfide oxidation" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_o2_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_h2s_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_so4_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_H2St1pp" name="h2s transport periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: s0001</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2s_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h2s_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_H2Stex" name="h2s transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2s_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h2s_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_H2tex" name="hydrogen transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h2_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_H2tpp" name="hydrogen transport diffusion periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: s0001</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h2_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_HACD1i" name="3 hydroxyacyl CoA dehydrogenase acetoacetyl CoA " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3983 or STM2388 )</p>
- <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_3hbcoa_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_aacoa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_HACD2i" name="3 hydroxyacyl CoA dehydrogenase 3 oxohexanoyl CoA " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3983 or STM2388 )</p>
- <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_3hhcoa_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_3ohcoa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_HACD3i" name="3 hydroxyacyl CoA dehydrogenase 3 oxooctanoyl CoA " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2388 or STM3983 )</p>
- <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_3hocoa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_3oocoa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_HACD4i" name="3 hydroxyacyl CoA dehydrogenase 3 oxodecanoyl CoA " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3983 or STM2388 )</p>
- <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_3hdcoa_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_3odcoa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_HACD5i" name="3 hydroxyacyl CoA dehydrogenase 3 oxododecanoyl CoA " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3983 or STM2388 )</p>
- <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_3hddcoa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_3oddcoa_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_HACD6i" name="3 hydroxyacyl CoA dehydrogenase 3 oxotetradecanoyl CoA " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3983 or STM2388 )</p>
- <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_3htdcoa_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_3otdcoa_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_HACD7i" name="3 hydroxyacyl CoA dehydrogenase 3 oxohexadecanoyl CoA " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3983 or STM2388 )</p>
- <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_3hhdcoa_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_3ohdcoa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_HACD8i" name="3 hydroxyacyl CoA dehydrogenase 3 oxooctadecanoyl CoA " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3983 or STM2388 )</p>
- <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_3hodcoa_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_3oodcoa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_HBZOPT" name="Hydroxybenzoate octaprenyltransferase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4234</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_4hbz_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_octdp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_3ophb_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_HCINNMtex" name="3 hydroxycinnamic acid transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_3hcinnm_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_3hcinnm_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_HCO3E" name="HCO3 equilibration reaction" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0171</p>
- <p>SUBSYSTEM: Unassigned</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_hco3_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_HDCAtexi" name="Hexadecanoate transport via facilitated irreversible diffusion extracellular to periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2391</p>
- <p>SUBSYSTEM: Transport Outer Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_hdca_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_hdca_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_HDCEAtexi" name="Hexadecenoate transport via facilitated irreversible diffusion extracellular to periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2391</p>
- <p>SUBSYSTEM: Transport Outer Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_hdcea_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_hdcea_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_HDCOAI" name="hexadecenoyl coa cis trans isomerization" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3983</p>
- <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_hdcoa_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_hdd2coa_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_HEMEOS" name="Heme O synthase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0439</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_frdp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pheme_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_hemeO_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_HEPK1" name="LPS heptose kinase I LPS core synthesis " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3721</p>
- <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_hhlipa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_phhlipa_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_HEPK2" name="LPS heptose kinase II LPS core synthesis " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3716</p>
- <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_hphhlipa_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_phphhlipa_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_HEPT1" name="heptosyltransferase I LPS core synthesis " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3712</p>
- <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_adphep__LD_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_lipa_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_hlipa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_HEPT2" name="heptosyltransferase II LPS core synthesis " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3711</p>
- <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_adphep__LD_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_hlipa_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_hhlipa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_HEPT3" name="heptosyltransferase III LPS core synthesis " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3723</p>
- <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_adphep__LD_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_phhlipa_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_hphhlipa_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_HEPT4" name="heptosyltransferase IV LPS core synthesis " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3714</p>
- <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_adphep__LD_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gggagicolipa_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_colipa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_HETZK" name="hydroxyethylthiazole kinase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2147</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_4mhetz_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_4mpetz_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_HEX1" name="hexokinase D glucoseATP " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2403</p>
- <p>SUBSYSTEM: GlycolysisGluconeogenesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_glc__D_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_g6p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_HEX4" name="hexokinase D mannoseATP " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_man_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_man6p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_HEX7" name="hexokinase D fructoseATP " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0393</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_fru_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_f6p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_HG2abcpp" name="Mercury Hg2 ABC transporter periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3576</p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_hg2_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_hg2_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_HG2tex" name="mercury Hg2 transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_hg2_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_hg2_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_HISTD" name="histidinol dehydrogenase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2072</p>
- <p>SUBSYSTEM: Histidine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nad_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_histd_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_c" stoichiometry="3" constant="true"/>
- <speciesReference species="M_nadh_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_his__L_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_HISTP" name="histidinol phosphatase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2074</p>
- <p>SUBSYSTEM: Histidine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_hisp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_histd_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_HISTRS" name="Histidyl tRNA synthetase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2522</p>
- <p>SUBSYSTEM: tRNA Charging</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_trnahis_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_his__L_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_histrna_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_HISabcpp" name="L histidine transport via ABC system periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2354 and STM2352 and STM2351 and STM2353 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_his__L_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_his__L_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_HISt2rpp" name="L histidine reversible transport via proton symport periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0150</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_his__L_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_his__L_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_HIStex" name="L histidine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_his__L_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_his__L_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_HMBS" name="hydroxymethylbilane synthase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3938</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ppbng_c" stoichiometry="4" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_hmbil_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nh4_c" stoichiometry="4" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_HMPK1" name="hydroxymethylpyrimidine kinase ATP " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2146 or STM2435 )</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_4ahmmp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_4ampm_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_HOMt2pp" name="L homoserineserine efflux via proton symport" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0832 or STM3960 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_hom__L_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_hom__L_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_HOMtex" name="L homoserine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_hom__L_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_hom__L_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_HPPK2" name="6 hydroxymethyl dihydropterin pyrophosphokinase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0183</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_6hmhpt_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_6hmhptpp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_HPPPNtex" name="3 3 hydroxyphenyl propionate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_3hpppn_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_3hpppn_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_HPYRI" name="hydroxypyruvate isomerase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0518</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_hpyr_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_2h3oppan_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_HPYRRx" name="Hydroxypyruvate reductase NADH " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM1135 or STM3646 )</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_hpyr_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glyc__R_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_HPYRRy" name="Hydroxypyruvate reductase NADPH " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3646 or STM1135 )</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_hpyr_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glyc__R_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_HSDy" name="homoserine dehydrogenase NADPH " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM4101 or STM0002 )</p>
- <p>SUBSYSTEM: Threonine and Lysine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_hom__L_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_aspsa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_HSK" name="homoserine kinase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0003</p>
- <p>SUBSYSTEM: Threonine and Lysine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_hom__L_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_phom_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_HSST" name="homoserine O succinyltransferase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4182</p>
- <p>SUBSYSTEM: Methionine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_succoa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_hom__L_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_suchms_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_HSTPT" name="histidinol phosphate transaminase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2073</p>
- <p>SUBSYSTEM: Histidine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_imacp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_akg_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_hisp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_HXAtex" name="Hexanoate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_hxa_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_hxa_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_HXPRT" name="hypoxanthine phosphoribosyltransferase Hypoxanthine " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0317 or STM0170 )</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_prpp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_hxan_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_imp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_HYPOE" name="hypothetical enyme" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pyam5p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pydam_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_HYXNtex" name="Hypoxanthine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_hxan_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_hxan_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_HYXNtpp" name="Hypoxanthine transport periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_hxan_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_hxan_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_Htex" name="proton transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0999 or STM1473 or STM2267 or STM0320 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ICDHyr" name="isocitrate dehydrogenase NADP " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1238</p>
- <p>SUBSYSTEM: Citric Acid Cycle</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_icit_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_akg_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ICHORS" name="isochorismate synthase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2310</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_chor_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ichor_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ICHORSi" name="Isochorismate Synthase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0595 or STM2310 )</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_chor_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ichor_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ICHORT" name="isochorismatase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0597</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ichor_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_23ddhb_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ICL" name="Isocitrate lyase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4184</p>
- <p>SUBSYSTEM: Anaplerotic Reactions</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_icit_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glx_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_succ_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_IDOND" name="L idonate 5 dehydrogenase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4484</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_5dglcn_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_idon__L_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_IDOND2" name="L indonate 5 dehydrogenase NADP " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4484</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_5dglcn_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_idon__L_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_IDONt2rpp" name="L idonate transport via proton symport reversible periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4482</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_idon__L_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_idon__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_IDONtex" name="L idonate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_idon__L_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_idon__L_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_IG3PS" name="Imidazole glycerol 3 phosphate synthase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2075 and STM2077 )</p>
- <p>SUBSYSTEM: Histidine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_prlp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gln__L_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_aicar_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_eig3p_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_IGPDH" name="imidazoleglycerol phosphate dehydratase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2074</p>
- <p>SUBSYSTEM: Histidine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_eig3p_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_imacp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_IGPS" name="indole 3 glycerol phosphate synthase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1725</p>
- <p>SUBSYSTEM: Tyrosine Tryptophan and Phenylalanine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_2cpr5p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_3ig3p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ILETA" name="isoleucine transaminase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3903</p>
- <p>SUBSYSTEM: Valine Leucine and Isoleucine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_akg_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ile__L_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_3mop_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ILETRS" name="Isoleucyl tRNA synthetase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0046</p>
- <p>SUBSYSTEM: tRNA Charging</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ile__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_trnaile_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_iletrna_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ILEabcpp" name="L isoleucine transport via ABC system periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3560 and STM3561 and STM3563 and STM3567 and STM3562 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ile__L_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ile__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ILEt2rpp" name="L isoleucine reversible transport via proton symport periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0399</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ile__L_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ile__L_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ILEtex" name="L isoleucine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ile__L_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ile__L_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_IMPC" name="IMP cyclohydrolase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4176</p>
- <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_imp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_fprica_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_IMPD" name="IMP dehydrogenase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2511</p>
- <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_imp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_xmp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_IMPtex" name="IMP transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_imp_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_imp_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_INDOLEt2pp" name="Indole transport via proton symport irreversible periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3390 and STM3391 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_indole_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_indole_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_INDOLEt2rpp" name="Indole transport via proton symport reversible periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3279</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_indole_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_indole_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_INDOLEtex" name="Indole transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_indole_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_indole_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_INSH" name="Inosine hydrolase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0051</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ins_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_rib__D_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_hxan_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_INSK" name="insosine kinase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0491</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ins_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_imp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_INSTtex" name="inositol transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_inost_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_inost_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_INSt2pp" name="inosine transport in via proton symport periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3113</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ins_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ins_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_INSt2rpp" name="inosine transport in via proton symport reversible periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2421</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ins_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ins_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_INStex" name="inosine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0413</p>
- <p>SUBSYSTEM: Transport Outer Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ins_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ins_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_IPDDI" name="isopentenyl diphosphate D isomerase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3039</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ipdp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_dmpp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_IPDPS" name="1 hydroxy 2 methyl 2 E butenyl 4 diphosphate reductase ipdp " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0049</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2mb4p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ipdp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_IPMD" name="3 isopropylmalate dehydrogenase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0112</p>
- <p>SUBSYSTEM: Valine Leucine and Isoleucine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_3c2hmp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_3c4mop_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_IPPMIa" name="3 isopropylmalate dehydratase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( ( STM0110 and STM0111 ) or ( STM0329 and STM0330 ) )</p>
- <p>SUBSYSTEM: Valine Leucine and Isoleucine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_3c2hmp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_2ippm_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_IPPMIb" name="2 isopropylmalate hydratase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0110 and STM0111 ) or ( STM0329 and STM0330 )</p>
- <p>SUBSYSTEM: Valine Leucine and Isoleucine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_2ippm_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_3c3hmp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_IPPS" name="2 isopropylmalate synthase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0113</p>
- <p>SUBSYSTEM: Valine Leucine and Isoleucine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_accoa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_3mob_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_3c3hmp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ISETACtex" name="isethionate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_isetac_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_isetac_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_K2L4Aabcpp" name="KDO 2 lipid IV A transport via ABC system periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0984</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_kdo2lipid4_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_kdo2lipid4_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_K2L4Atex" name="KDO 2 lipid IV A transport via vector periplasm to extracellular " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Transport Outer Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_kdo2lipid4_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_kdo2lipid4_e" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_KARA1" name="ketol acid reductoisomerase 2 3 dihydroxy 3 methylbutanoate " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3909</p>
- <p>SUBSYSTEM: Valine Leucine and Isoleucine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_23dhmb_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_alac__S_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_KARA2" name="ketol acid reductoisomerase 2 Acetolactate " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3909</p>
- <p>SUBSYSTEM: Valine Leucine and Isoleucine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2ahbut_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_23dhmp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_KAS14" name="beta ketoacyl ACP synthase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2378 or STM1197 )</p>
- <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_acACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_malACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_actACP_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_KAS15" name="beta ketoacyl ACP synthase 2 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1193</p>
- <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_malACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_accoa_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_actACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_KAT1" name="3 ketoacyl CoA thiolase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2389 or STM3982 )</p>
- <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_aacoa_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_accoa_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_KAT2" name="3 ketoacyl CoA thiolase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3982 or STM2389 )</p>
- <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_3ohcoa_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_accoa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_btcoa_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_KAT3" name="3 ketoacyl CoA thiolase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2389 or STM3982 )</p>
- <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_3oocoa_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_accoa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_hxcoa_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_KAT4" name="3 ketoacyl CoA thiolase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2389 or STM3982 )</p>
- <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_3odcoa_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_accoa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_occoa_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_KAT5" name="3 ketoacyl CoA thiolase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2389 or STM3982 )</p>
- <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_3oddcoa_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_accoa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dcacoa_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_KAT6" name="3 ketoacyl CoA thiolase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3982 or STM2389 )</p>
- <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_3otdcoa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ddcacoa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_accoa_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_KAT7" name="3 ketoacyl CoA thiolase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3982 or STM2389 )</p>
- <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_3ohdcoa_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_accoa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_tdcoa_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_KAT8" name="3 ketoacyl CoA thiolase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3982 or STM2389 )</p>
- <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_3oodcoa_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_accoa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pmtcoa_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_KDOCT2" name="3 deoxy manno octulosonate cytidylyltransferase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0988</p>
- <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ctp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_kdo_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ckdo_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_KDOPP" name="3 deoxy manno octulosonate 8 phosphatase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3316</p>
- <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_kdo8p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_kdo_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_KDOPS" name="3 deoxy D manno octulosonic acid 8 phosphate synthase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1772</p>
- <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ara5p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pep_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_kdo8p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_KG6PDC" name="3 keto L gulonate 6 phosphate decarboxylase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM4386 or STM3675 )</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_3dhgulnp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_xu5p__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_Kabcpp" name="Potassium ABC transporter periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0706 and STM0705 and STM0704 )</p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_k_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_k_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_Kt2pp" name="potassium transport in via proton symport periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3880 or ( STM1695 and STM3409 and STM3986 ) )</p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_k_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_k_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_Kt3pp" name="potassium transport out via proton antiport periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3457 or STM0086 or STM1771 or STM0866 )</p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_k_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_k_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_Ktex" name="potassium transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_k_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_k_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LA4NTpp" name="4 amino 4 deoxy L arabinotransferase LPS lipid A modification periplasmic face of membrane " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2301</p>
- <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_uLa4n_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_colipa_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_acolipa_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udcpp_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LADGMDH" name="L alanyl gamma D glutamyl meso diaminopimelate hydrolase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1680</p>
- <p>SUBSYSTEM: Murein Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_LalaDgluMdap_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_LalaDglu_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_26dap__M_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LALDO2x" name="D LactaldehydeNAD 1 oxidoreductase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4108</p>
- <p>SUBSYSTEM: Methylglyoxal Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_mthgxl_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_lald__D_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LALGP" name="L alanyl gamma L glutamate peptidase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0316</p>
- <p>SUBSYSTEM: Murein Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_LalaLglu_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ala__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LCARR" name="lacaldehyde reductase R propane 1 2 diol forming " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Methylglyoxal Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_lald__D_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_12ppd__R_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LCARS" name="lacaldehyde reductase S propane 1 2 diol forming " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2973</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_lald__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_12ppd__S_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LCTStex" name="Lactose transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_lcts_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_lcts_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LDH_D" name="D lactate dehydrogenase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2167 or STM1647 )</p>
- <p>SUBSYSTEM: Pyruvate Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_lac__D_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LDH_D2" name="D lactate dehydrogenase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2167</p>
- <p>SUBSYSTEM: Oxidative Phosphorylation</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_q8_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_lac__D_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_q8h2_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LEUTAi" name="leucine transaminase irreversible " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3903 or STM4248 )</p>
- <p>SUBSYSTEM: Valine Leucine and Isoleucine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_4mop_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_leu__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_akg_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LEUTRS" name="Leucyl tRNA synthetase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0648</p>
- <p>SUBSYSTEM: tRNA Charging</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_leu__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_trnaleu_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_leutrna_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LEUabcpp" name="L leucine transport via ABC system periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( ( STM3560 and STM3561 and STM3563 and STM3567 and STM3562 ) or ( STM3560 and STM3561 and STM3563 and STM3564 and STM3562 ) )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_leu__L_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_leu__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LEUt2rpp" name="L leucine reversible transport via proton symport periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0399</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_leu__L_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_leu__L_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LEUtex" name="L leucine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_leu__L_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_leu__L_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LGTHL" name="lactoylglutathione lyase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM1435 or STM0235 )</p>
- <p>SUBSYSTEM: Methylglyoxal Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_gthrd_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_mthgxl_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_lgt__S_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LIPACabcpp" name="lipid cold A transport via ABC system periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0984</p>
- <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_lipa__cold_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_lipa__cold_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LIPAabcpp" name="lipid A transport via ABC system periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0984</p>
- <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_lipa_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_lipa_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LIPAtex" name="lipid A transport via vector periplasm to extracellular " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_lipa_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_lipa_e" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LPADSS" name="Lipid A disaccaride synthase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0229</p>
- <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_u23ga_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_lipidX_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_udp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_lipidAds_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LPLIPAL1A120pp" name="Lysophospholipase L1 2 acylglycerophosphotidate n C120 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0506</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_1ddecg3p_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ddca_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glyc3p_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LPLIPAL1A140pp" name="Lysophospholipase L1 2 acylglycerophosphotidate n C140 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0506</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_1tdecg3p_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ttdca_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glyc3p_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LPLIPAL1A141pp" name="Lysophospholipase L1 2 acylglycerophosphotidate n C141 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0506</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_1tdec7eg3p_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glyc3p_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ttdcea_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LPLIPAL1A160pp" name="Lysophospholipase L1 2 acylglycerophosphotidate n C160 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0506</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_1hdecg3p_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_hdca_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glyc3p_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LPLIPAL1A161pp" name="Lysophospholipase L1 2 acylglycerophosphotidate n C161 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0506</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_1hdec9eg3p_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glyc3p_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_hdcea_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LPLIPAL1A180pp" name="Lysophospholipase L1 2 acylglycerophosphotidate n C180 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0506</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_1odecg3p_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glyc3p_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ocdca_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LPLIPAL1A181pp" name="Lysophospholipase L1 2 acylglycerophosphotidate n C181 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0506</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_1odec11eg3p_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ocdcea_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glyc3p_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LPLIPAL1E120pp" name="Lysophospholipase L1 2 acylglycerophosphoethanolamine n C120 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0506</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_1agpe120_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ddca_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_g3pe_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LPLIPAL1E140pp" name="Lysophospholipase L1 2 acylglycerophosphoethanolamine n C140 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0506</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_1agpe140_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_g3pe_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ttdca_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LPLIPAL1E141pp" name="Lysophospholipase L1 2 acylglycerophosphoethanolamine n C141 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0506</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_1agpe141_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_g3pe_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ttdcea_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LPLIPAL1E160pp" name="Lysophospholipase L1 2 acylglycerophosphoethanolamine n C160 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0506</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_1agpe160_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_g3pe_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_hdca_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LPLIPAL1E161pp" name="Lysophospholipase L1 2 acylglycerophosphoethanolamine n C161 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0506</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_1agpe161_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_g3pe_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_hdcea_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LPLIPAL1E180pp" name="Lysophospholipase L1 2 acylglycerophosphoethanolamine n C180 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0506</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_1agpe180_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_g3pe_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ocdca_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LPLIPAL1E181pp" name="Lysophospholipase L1 2 acylglycerophosphoethanolamine n C181 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0506</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_1agpe181_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_g3pe_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ocdcea_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LPLIPAL1G120pp" name="Lysophospholipase L1 2 acylglycerophosphoglycerol n C120 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0506</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_1agpg120_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_g3pg_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ddca_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LPLIPAL1G140pp" name="Lysophospholipase L1 2 acylglycerophosphoglycerol n C140 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0506</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_1agpg140_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_g3pg_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ttdca_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LPLIPAL1G141pp" name="Lysophospholipase L1 2 acylglycerophosphoglycerol n C141 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0506</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_1agpg141_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_g3pg_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ttdcea_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LPLIPAL1G160pp" name="Lysophospholipase L1 2 acylglycerophosphoglycerol n C160 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0506</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_1agpg160_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_hdca_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_g3pg_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LPLIPAL1G161pp" name="Lysophospholipase L1 2 acylglycerophosphoglycerol n C161 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0506</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_1agpg161_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_hdcea_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_g3pg_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LPLIPAL1G180pp" name="Lysophospholipase L1 2 acylglycerophosphoglycerol n C180 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0506</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_1agpg180_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ocdca_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_g3pg_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LPLIPAL1G181pp" name="Lysophospholipase L1 2 acylglycerophosphoglycerol n C181 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0506</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_1agpg181_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ocdcea_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_g3pg_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LPLIPAL2A120" name="Lysophospholipase L2 2 acylglycerophosphotidate n C120 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3961</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_2ddecg3p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glyc3p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ddca_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LPLIPAL2A140" name="Lysophospholipase L2 2 acylglycerophosphotidate n C140 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3961</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2tdecg3p_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glyc3p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ttdca_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LPLIPAL2A141" name="Lysophospholipase L2 2 acylglycerophosphotidate n C141 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3961</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_2tdec7eg3p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glyc3p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ttdcea_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LPLIPAL2A160" name="Lysophospholipase L2 2 acylglycerophosphotidate n C160 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3961</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_2hdecg3p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_hdca_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glyc3p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LPLIPAL2A161" name="Lysophospholipase L2 2 acylglycerophosphotidate n C161 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3961</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_2hdec9eg3p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_hdcea_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glyc3p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LPLIPAL2A180" name="Lysophospholipase L2 2 acylglycerophosphotidate n C180 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3961</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2odecg3p_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ocdca_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glyc3p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LPLIPAL2A181" name="Lysophospholipase L2 2 acylglycerophosphotidate n C181 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3961</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_2odec11eg3p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glyc3p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_ocdcea_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LPLIPAL2ATE120" name="Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoethanolamine n C120 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3961</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pg120_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2agpe120_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_apg120_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_g3pe_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LPLIPAL2ATE140" name="Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoethanolamine n C140 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3961</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_2agpe140_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pg140_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_apg140_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_g3pe_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LPLIPAL2ATE141" name="Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoethanolamine n C141 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3961</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pg141_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2agpe141_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_apg141_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_g3pe_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LPLIPAL2ATE160" name="Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoethanolamine n C160 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3961</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pg160_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2agpe160_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_apg160_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_g3pe_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LPLIPAL2ATE161" name="Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoethanolamine n C161 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3961</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pg161_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2agpe161_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_apg161_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_g3pe_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LPLIPAL2ATE180" name="Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoethanolamine n C180 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3961</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pg180_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2agpe180_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_g3pe_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_apg180_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LPLIPAL2ATE181" name="Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoethanolamine n C181 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3961</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pg181_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2agpe181_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_apg181_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_g3pe_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LPLIPAL2ATG120" name="Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoglycerol n C120 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3961</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pg120_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2agpg120_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_apg120_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_g3pg_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LPLIPAL2ATG140" name="Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoglycerol n C140 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3961</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pg140_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2agpg140_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_apg140_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_g3pg_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LPLIPAL2ATG141" name="Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoglycerol n C141 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3961</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_2agpg141_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pg141_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_apg141_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_g3pg_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LPLIPAL2ATG160" name="Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoglycerol n C160 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3961</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pg160_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2agpg160_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_apg160_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_g3pg_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LPLIPAL2ATG161" name="Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoglycerol n C161 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3961</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pg161_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2agpg161_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_apg161_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_g3pg_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LPLIPAL2ATG180" name="Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoglycerol n C180 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3961</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pg180_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2agpg180_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_apg180_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_g3pg_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LPLIPAL2ATG181" name="Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoglycerol n C181 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3961</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pg181_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2agpg181_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_apg181_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_g3pg_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LPLIPAL2E120" name="Lysophospholipase L2 2 acylglycerophosphoethanolamine n C120 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3961</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_2agpe120_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ddca_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_g3pe_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LPLIPAL2E140" name="Lysophospholipase L2 2 acylglycerophosphoethanolamine n C140 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3961</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_2agpe140_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ttdca_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_g3pe_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LPLIPAL2E141" name="Lysophospholipase L2 2 acylglycerophosphoethanolamine n C141 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3961</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2agpe141_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ttdcea_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_g3pe_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LPLIPAL2E160" name="Lysophospholipase L2 2 acylglycerophosphoethanolamine n C160 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3961</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2agpe160_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_g3pe_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_hdca_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LPLIPAL2E161" name="Lysophospholipase L2 2 acylglycerophosphoethanolamine n C161 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3961</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2agpe161_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_hdcea_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_g3pe_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LPLIPAL2E180" name="Lysophospholipase L2 2 acylglycerophosphoethanolamine n C180 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3961</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_2agpe180_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ocdca_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_g3pe_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LPLIPAL2E181" name="Lysophospholipase L2 2 acylglycerophosphoethanolamine n C181 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3961</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2agpe181_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_g3pe_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ocdcea_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LPLIPAL2G120" name="Lysophospholipase L2 2 acylglycerophosphoglycerol n C120 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3961</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2agpg120_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ddca_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_g3pg_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LPLIPAL2G140" name="Lysophospholipase L2 2 acylglycerophosphoglycerol n C140 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3961</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_2agpg140_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ttdca_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_g3pg_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LPLIPAL2G141" name="Lysophospholipase L2 2 acylglycerophosphoglycerol n C141 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3961</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2agpg141_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_g3pg_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ttdcea_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LPLIPAL2G160" name="Lysophospholipase L2 2 acylglycerophosphoglycerol n C160 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3961</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2agpg160_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_hdca_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_g3pg_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LPLIPAL2G161" name="Lysophospholipase L2 2 acylglycerophosphoglycerol n C161 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3961</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2agpg161_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_hdcea_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_g3pg_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LPLIPAL2G180" name="Lysophospholipase L2 2 acylglycerophosphoglycerol n C180 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3961</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2agpg180_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ocdca_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_g3pg_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LPLIPAL2G181" name="Lysophospholipase L2 2 acylglycerophosphoglycerol n C181 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3961</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2agpg181_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ocdcea_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_g3pg_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LSERDHr" name="L serine dehydrogenase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1511</p>
- <p>SUBSYSTEM: Glycine and Serine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ser__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_2amsa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LYSDC" name="lysine decarboxylase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0234 or STM2559 )</p>
- <p>SUBSYSTEM: Threonine and Lysine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_lys__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_15dap_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LYSTRS" name="Lysyl tRNA synthetase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3040</p>
- <p>SUBSYSTEM: tRNA Charging</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_lys__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_trnalys_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_lystrna_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LYSabcpp" name="L lysine transport via ABC system periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2355 and STM2352 and STM2351 and STM2353 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_lys__L_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_lys__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LYSt2pp" name="L lysine transport in via proton symport periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2200</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_lys__L_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_lys__L_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LYSt3pp" name="L lysine transport out via proton antiport cytoplasm to periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3066</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_lys__L_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_lys__L_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LYStex" name="L lysine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_lys__L_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_lys__L_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LYXI" name="Lyxose isomerase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4046</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_lyx__L_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_xylu__L_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LYXt2pp" name="L Lyxose transport via proton symport periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4050</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_lyx__L_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_lyx__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LYXtex" name="L Lyxose transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_lyx__L_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_lyx__L_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_L_LACD2" name="L Lactate dehydrogenase ubiquinone " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3694</p>
- <p>SUBSYSTEM: Oxidative Phosphorylation</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_q8_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_lac__L_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_q8h2_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_L_LACD3" name="L Lactate dehydrogenase menaquinone " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3694</p>
- <p>SUBSYSTEM: Oxidative Phosphorylation</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_mqn8_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_lac__L_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_mql8_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_L_LACt2rpp" name="L lactate reversible transport via proton symport periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3692</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_lac__L_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_lac__L_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_L_LACtex" name="L lactate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_lac__L_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_lac__L_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_M1PD" name="mannitol 1 phosphate 5 dehydrogenase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3686</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_mnl1p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_f6p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MACPD" name="Malonyl ACP decarboxylase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2378</p>
- <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_malACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_acACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MALDt2_2pp" name="D Malate transport via proton symport 2 H periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3614</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_mal__D_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="2" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_mal__D_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MALDtex" name="D Malate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM1473 or STM0999 or STM2267 or STM0320 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_mal__D_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_mal__D_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MALS" name="malate synthase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4183</p>
- <p>SUBSYSTEM: Anaplerotic Reactions</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glx_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_accoa_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_mal__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MALTATr" name="maltose O acetyltransferase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0472</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_accoa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_malt_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_acmalt_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MALTHXabcpp" name="maltohexaose transport via ABC system periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM4229 and STM4228 and STM4227 and STM4230 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_malthx_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_malthx_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MALTHXtexi" name="maltohexaose transport via diffusion extracellular to periplasm irreversible" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4231</p>
- <p>SUBSYSTEM: Transport Outer Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_malthx_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_malthx_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MALTPTabcpp" name="maltopentaose transport via ABC system periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM4229 and STM4228 and STM4227 and STM4230 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_maltpt_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_maltpt_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MALTPTtexi" name="maltopentaoseMaltotriose transport via diffusion extracellular to periplasm irreversible" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4231</p>
- <p>SUBSYSTEM: Transport Outer Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_maltpt_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_maltpt_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MALTTRabcpp" name="Maltotriose transport via ABC system periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM4229 and STM4228 and STM4227 and STM4230 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_malttr_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_malttr_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MALTTRtexi" name="Maltotriose transport via diffusion extracellular to periplasm irreversible" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4231</p>
- <p>SUBSYSTEM: Transport Outer Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_malttr_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_malttr_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MALTTTRabcpp" name="maltotetraose transport via ABC system periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM4229 and STM4228 and STM4227 and STM4230 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_maltttr_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_maltttr_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MALTTTRtexi" name="maltotetraoseMaltotriose transport via diffusion extracellular to periplasm irreversible" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4231</p>
- <p>SUBSYSTEM: Transport Outer Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_maltttr_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_maltttr_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MALTabcpp" name="maltose transport via ABC system periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM4229 and STM4228 and STM4227 and STM4230 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_malt_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_malt_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MALTptspp" name="maltose transport via PEPPyr PTS periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2433 and STM2431 and STM2432 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pep_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_malt_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_malt6p_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MALTtexi" name="maltoseMaltotriose transport via diffusion extracellular to periplasm irreversible" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4231</p>
- <p>SUBSYSTEM: Transport Outer Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_malt_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_malt_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MALt2_2pp" name="Malate transport via proton symport 2 H periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3614</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="2" constant="true"/>
- <speciesReference species="M_mal__L_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_mal__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MALtex" name="Malate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_mal__L_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_mal__L_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MAN6PI" name="mannose 6 phosphate isomerase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1467</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_man6p_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_f6p_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MAN6Pt6_2pp" name="Mannose 6 phosphate transport via phosphate antiport periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3787</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_man6p_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="2" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pi_p" stoichiometry="2" constant="true"/>
- <speciesReference species="M_man6p_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MAN6Ptex" name="Mannose 6 phosphate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_man6p_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_man6p_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MANGLYCtex" name="2 O alpha mannosyl D glycerate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_manglyc_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_manglyc_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MANptspp" name="D mannose transport via PEPPyr PTS periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM1830 and STM1831 and STM1832 and STM2431 and STM2432 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pep_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_man_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_man6p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MANtex" name="D mannose transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_man_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_man_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MCITD" name="2 methylcitrate dehydratase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0370</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_2mcit_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2mcacn_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MCITL2" name="methylisocitrate lyase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0368</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_micit_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_succ_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MCITS" name="2 methylcitrate synthase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0369</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_oaa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppcoa_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2mcit_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MCOATA" name="Malonyl CoA ACP transacylase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM1196 and STM1194 )</p>
- <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_malcoa_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_malACP_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MCPST" name="3 mercaptopyruvate sulfurtransferase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2533</p>
- <p>SUBSYSTEM: Cysteine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_cyan_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_mercppyr_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_tcynt_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MCTP1App" name="murein crosslinking transpeptidase 1A A2pm D ala periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0122 or STM0640 or STM0190 or STM3493 )</p>
- <p>SUBSYSTEM: Murein Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_murein5p5p_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_murein5px4p_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ala__D_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MCTP1Bpp" name="murein crosslinking transpeptidase 1B A2pm A2pm periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0190 or STM3493 )</p>
- <p>SUBSYSTEM: Murein Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_murein5p5p_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_alaala_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_murein5px3p_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MCTP2App" name="murein crosslinking transpeptidase 1A A2pm D ala periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0122 or STM0640 or STM3493 or STM0190 )</p>
- <p>SUBSYSTEM: Murein Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_murein5p5p5p_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_murein5px4px4p_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ala__D_p" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MDDCP1pp" name="murein D D carboxypeptidase murein5px4p periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0637 or STM3300 or STM0863 or STM2062 )</p>
- <p>SUBSYSTEM: Murein Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_murein5px4p_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_murein4px4p_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ala__D_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MDDCP2pp" name="murein D D carboxypeptidase murein5px4px4p periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0637 or STM3300 or STM0863 or STM2062 )</p>
- <p>SUBSYSTEM: Murein Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_murein5px4px4p_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_murein4px4px4p_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ala__D_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MDDCP3pp" name="murein D D carboxypeptidase murein5p5p periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0637 or STM3300 or STM0863 or STM2062 )</p>
- <p>SUBSYSTEM: Murein Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_murein5p5p_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_murein5p4p_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ala__D_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MDDCP4pp" name="murein D D carboxypeptidase murein5p4p periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0637 or STM3300 or STM0863 or STM2062 )</p>
- <p>SUBSYSTEM: Murein Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_murein5p4p_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_murein4p4p_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ala__D_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MDDCP5pp" name="murein D D carboxypeptidase murein5p3p periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0637 or STM3300 or STM0863 or STM2062 )</p>
- <p>SUBSYSTEM: Murein Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_murein5p3p_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ala__D_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_murein4p3p_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MDDEP1pp" name="murein D D endopeptidase murein4px4p periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3300 or STM2383 or STM2168 )</p>
- <p>SUBSYSTEM: Murein Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_murein4px4p_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_murein4p4p_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MDDEP2pp" name="murein D D endopeptidase murein3px4p periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3300 or STM2383 or STM2168 )</p>
- <p>SUBSYSTEM: Murein Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_murein3px4p_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_murein4p3p_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MDDEP3pp" name="murein D D endopeptidase murein5px4p periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3300 or STM2383 or STM2168 )</p>
- <p>SUBSYSTEM: Murein Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_murein5px4p_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_murein5p4p_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MDDEP4pp" name="murein D D endopeptidase murein4px4px4p periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3300 or STM2383 or STM2168 )</p>
- <p>SUBSYSTEM: Murein Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_murein4px4px4p_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_murein4px4p4p_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MDH" name="malate dehydrogenase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3359</p>
- <p>SUBSYSTEM: Citric Acid Cycle</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_mal__L_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_oaa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MDRPD" name="5 Methylthio 5 deoxy D ribulose 1 phosphate dehydratase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_5mdru1p_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_dkmpp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ME1" name="malic enzyme NAD " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1566</p>
- <p>SUBSYSTEM: Anaplerotic Reactions</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_mal__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ME2" name="malic enzyme NADP " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2472</p>
- <p>SUBSYSTEM: Anaplerotic Reactions</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_mal__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MECDPDH2" name="2C methyl D erythritol 2 4 cyclodiphosphate dehydratase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2523</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_2mecdp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2mb4p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MECDPS" name="2 C methyl D erythritol 2 4 cyclodiphosphate synthase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2929</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_2p4c2me_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_2mecdp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cmp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MELIBt2pp" name="melibiose transport in via symport periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4299</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_melib_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_melib_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MELIBt3ipp" name="melibiose transport in via antiport periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1522</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_melib_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_melib_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MELIBtex" name="melibiose transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_melib_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_melib_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MEPCT" name="2 C methyl D erythritol 4 phosphate cytidylyltransferase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2930</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_2me4p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ctp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_4c2me_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_METAT" name="methionine adenosyltransferase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3090</p>
- <p>SUBSYSTEM: Methionine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_met__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_amet_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_METDabcpp" name="D methionine transport via ABC system periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0246 and STM0247 and STM0245 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_met__D_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_met__D_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_METDtex" name="D methionine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM1473 or STM2267 or STM0320 or STM0999 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_met__D_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_met__D_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_METOX1s" name="methionine oxidation spontaneous " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: s0001</p>
- <p>SUBSYSTEM: Methionine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_met__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o2_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_metsox__S__L_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_METOX2s" name="methionine oxidation 2 spontaneous " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: s0001</p>
- <p>SUBSYSTEM: Methionine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_met__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o2_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_metsox__R__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_METS" name="methionine synthase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM4188.S or STM3965 )</p>
- <p>SUBSYSTEM: Methionine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_5mthf_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_hcys__L_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_thf_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_met__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_METSOX1abcpp" name="L methionine S oxide transport via ABC system periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_metsox__S__L_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_metsox__S__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_METSOX1tex" name="L methionine S oxide diffusion extracellular " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_metsox__S__L_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_metsox__S__L_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_METSOX2abcpp" name="L methionine R oxide transport via ABC system periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_metsox__R__L_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_metsox__R__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_METSOX2tex" name="L methionine R oxide diffusion extracellular " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_metsox__R__L_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_metsox__R__L_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_METSOXR1" name="L methionine S oxide reductase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( ( STM4408 and STM2649 ) or ( STM4408 and STM3915 ) )</p>
- <p>SUBSYSTEM: Methionine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_trdrd_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_metsox__S__L_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_trdox_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_met__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_METSOXR2" name="L methionine R sulfoxide reductase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( ( STM1291 and STM2649 ) or ( STM1291 and STM3915 ) )</p>
- <p>SUBSYSTEM: Methionine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_metsox__R__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_trdrd_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_met__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_trdox_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_METTRS" name="Methionyl tRNA synthetase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2155</p>
- <p>SUBSYSTEM: tRNA Charging</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_met__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_trnamet_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_mettrna_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_METabcpp" name="L methionine transport via ABC system periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0246 and STM0247 and STM0245 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_met__L_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_met__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_METtex" name="L methionine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_met__L_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_met__L_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MG2t3_2pp" name="magnesium Mg2 transport inout via proton antiport periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_mg2_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_p" stoichiometry="2" constant="true"/>
- <speciesReference species="M_mg2_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MG2tex" name="magnesium Mg2 transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_mg2_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_mg2_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MG2tpp" name="magnesium 2 transport in via diffusion" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3952</p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_mg2_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_mg2_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MGSA" name="methylglyoxal synthase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1076</p>
- <p>SUBSYSTEM: Methylglyoxal Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_dhap_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_mthgxl_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MI1PP" name="myo inositol 1 phosphatase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2546</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_mi1p__D_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_inost_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MICITD" name="2 methylisocitrate dehydratase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0158</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2mcacn_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_micit_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MINOHPtexi" name="myo inositol phosphate transport via diffusion extracellular to periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Transport Outer Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_minohp_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_minohp_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MLDCP1App" name="murein L D carboxypeptidase murein5px4p periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Murein Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_murein5px4p_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_murein3px4p_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_alaala_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MLDCP1Bpp" name="murein L D carboxypeptidase murein4p4p periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Murein Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_murein4p4p_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_murein4p3p_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ala__D_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MLDCP2App" name="murein L D carboxypeptidase murein5p5p periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Murein Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_murein5p5p_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_murein5p3p_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_alaala_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MLDCP2Bpp" name="murein L D carboxypeptidase murein4p3p periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Murein Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_murein4p3p_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ala__D_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_murein3p3p_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MLDCP3App" name="murein L D carboxypeptidase murein5px3p periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Murein Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_murein5px3p_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_murein3px3p_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_alaala_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MLDEP1pp" name="murein L D endopeptidase murein3px3p periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Murein Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_murein3px3p_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_murein3p3p_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MLDEP2pp" name="murein L D endopeptidase murein5px3p periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Murein Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_murein5px3p_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_murein5p3p_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MLTG1" name="Maltodextrin glucosidase maltotriose " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0401</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_malttr_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_malt_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glc__D_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MLTG2" name="Maltodextrin glucosidase maltotetraose " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0401</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_maltttr_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glc__D_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_malttr_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MLTG3" name="Maltodextrin glucosidase maltopentaose " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0401</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_maltpt_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glc__D_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_maltttr_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MLTG4" name="Maltodextrin glucosidase maltohexaose " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0401</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_malthx_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glc__D_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_maltpt_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MLTG5" name="Maltodextrin glucosidase maltoheptaose " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0401</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_malthp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glc__D_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_malthx_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MLTGY1pp" name="murein lytic transglycosylase murein4p4p periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM4582 or STM2988 or STM2831 or STM1799 or STM3112 )</p>
- <p>SUBSYSTEM: Murein Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_murein4p4p_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_anhgm4p_p" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MLTGY2pp" name="murein lytic transglycosylase murein4p3p periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM4582 or STM2988 or STM2831 or STM1799 or STM3112 )</p>
- <p>SUBSYSTEM: Murein Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_murein4p3p_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_anhgm4p_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_anhgm3p_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MLTGY3pp" name="murein lytic transglycosylase murein3p3p periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM4582 or STM2988 or STM2831 or STM1799 or STM3112 )</p>
- <p>SUBSYSTEM: Murein Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_murein3p3p_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_anhgm3p_p" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MLTGY4pp" name="murein lytic transglycosylase murein4px4p4p periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM4582 or STM2988 or STM2831 or STM1799 or STM3112 )</p>
- <p>SUBSYSTEM: Murein Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_murein4px4p4p_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_murein4px4p_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_anhgm4p_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MLTP1" name="Maltodextrin phosphorylase maltopentaose " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3514</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_maltpt_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_g1p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_maltttr_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MLTP2" name="Maltodextrin phosphorylase maltohexaose " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3514</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_malthx_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_g1p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_maltpt_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MLTP3" name="Maltodextrin phosphorylase maltoheptaose " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3514</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_malthp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_g1p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_malthx_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MME" name="methylmalonyl CoA epimerase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_mmcoa__R_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_mmcoa__S_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MMETtex" name="S methyl L methionine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_mmet_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_mmet_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MN2t3pp" name="manganese Mn2 transport out via proton antiport periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM4061 or STM0758 )</p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_mn2_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_mn2_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MN2tpp" name="manganese transport in via permease no H " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3190</p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_mn2_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_mn2_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MN6PP" name="mannose 6 phosphate phosphatase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0840 or STM0842 )</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_man6p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_man_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MNLptspp" name="mannitol transport via PEPPyr PTS periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3685 and STM2431 and STM2432 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pep_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_mnl_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_mnl1p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MNLtex" name="mannitol transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_mnl_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_mnl_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MNt2pp" name="manganese Mn2 transport in via proton symport periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2408</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_mn2_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_mn2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MNtex" name="Manganese Mn2 transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_mn2_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_mn2_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MOAT" name="3 deoxy D manno octulosonic acid transferase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3724</p>
- <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ckdo_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_lipidA_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_kdolipid4_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cmp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MOAT2" name="3 deoxy D manno octulosonic acid transferase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3724</p>
- <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_kdolipid4_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ckdo_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cmp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_kdo2lipid4_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MOAT3C" name="3 deoxy D manno octulosonic acid transferase III LPS core biosynthesis " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3715</p>
- <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_phphhlipa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ckdo_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cmp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_kphphhlipa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MOBDabcpp" name="molybdate transport via ABC system periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( ( STM2441 and STM2444 and STM2443 and STM2442 ) or ( STM0781 and STM0782 and STM0783 ) or ( STM2441 and STM2443 and STM2442 and STM4063 ) )</p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_mobd_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_mobd_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MOBDtex" name="molybdate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_mobd_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_mobd_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MOHMT" name="3 methyl 2 oxobutanoate hydroxymethyltransferase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0182</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_mlthf_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_3mob_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_thf_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2dhp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MPTG" name="murein polymerizing transglycosylase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2531 or STM0190 or STM3493 )</p>
- <p>SUBSYSTEM: Murein Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_uaagmda_c" stoichiometry="2" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_udcpdp_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_murein5p5p_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MPTG2" name="murein polymerizing transglycosylase 2 three linked units " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0190 or STM2531 or STM3493 )</p>
- <p>SUBSYSTEM: Murein Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_murein5p5p_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_uaagmda_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_udcpdp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_murein5p5p5p_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MSO3tex" name="methanesulfonate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_mso3_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_mso3_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MTAN" name="methylthioadenosine nucleosidase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0207</p>
- <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_5mta_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ade_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_5mtr_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MTHFC" name="methenyltetrahydrofolate cyclohydrolase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0542</p>
- <p>SUBSYSTEM: Folate Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_methf_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_10fthf_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MTHFD" name="methylenetetrahydrofolate dehydrogenase NADP " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0542</p>
- <p>SUBSYSTEM: Folate Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_mlthf_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_methf_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MTHFR2" name="5 10 methylenetetrahydrofolate reductase NADH " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4105</p>
- <p>SUBSYSTEM: Folate Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_mlthf_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_5mthf_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MTRI" name="5 methylthioribose 1 phosphate isomerase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_5mdr1p_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_5mdru1p_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MTRK" name="5 methylthioribose kinase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_5mtr_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_5mdr1p_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MTRPOX" name="N methyltryptophan oxidase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1160</p>
- <p>SUBSYSTEM: Glycine and Serine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_Nmtrp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_o2_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h2o2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fald_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_trp__L_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_N2Otex" name="nitrious oxide transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_n2o_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_n2o_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_N2Otpp" name="nitrious oxide transport diffusion " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: s0001</p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_n2o_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_n2o_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NACODA" name="N acetylornithine deacetylase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4120</p>
- <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_acg5sa_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ac_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glu5sa_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NACtex" name="Nicotinic acid transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nac_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nac_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NACtpp" name="Nicotinic acid uptake periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nac_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nac_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NADDP" name="NAD diphosphatase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2427 or STM4166 )</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nmn_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NADH10" name="NADH dehydrogenase menaquinone 8 0 protons " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1211</p>
- <p>SUBSYSTEM: Oxidative Phosphorylation</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_mqn8_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_mql8_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NADH16pp" name="NADH dehydrogenase ubiquinone 8 3 protons periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2316.S and STM2317 and STM2318 and STM2319 and STM2320 and STM2321 and STM2322 and STM2323.S and STM2324 and STM2325 and STM2326 and STM2327 and STM2328 )</p>
- <p>SUBSYSTEM: Oxidative Phosphorylation</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_q8_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="4" constant="true"/>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="3" constant="true"/>
- <speciesReference species="M_q8h2_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NADH17pp" name="NADH dehydrogenase menaquinone 8 3 protons periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2316.S and STM2317 and STM2318 and STM2319 and STM2320 and STM2321 and STM2322 and STM2323.S and STM2324 and STM2325 and STM2326 and STM2327 and STM2328 )</p>
- <p>SUBSYSTEM: Oxidative Phosphorylation</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_mqn8_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="4" constant="true"/>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_p" stoichiometry="3" constant="true"/>
- <speciesReference species="M_mql8_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NADH18pp" name="NADH dehydrogenase demethylmenaquinone 8 3 protons periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2316.S and STM2317 and STM2318 and STM2319 and STM2320 and STM2321 and STM2322 and STM2323.S and STM2324 and STM2325 and STM2326 and STM2327 and STM2328 )</p>
- <p>SUBSYSTEM: Oxidative Phosphorylation</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_2dmmq8_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="4" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_2dmmql8_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="3" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NADH5" name="NADH dehydrogenase ubiquinone 8 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1211</p>
- <p>SUBSYSTEM: Oxidative Phosphorylation</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_q8_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_q8h2_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NADH9" name="NADH dehydrogenase demethylmenaquinone 8 0 protons " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1211</p>
- <p>SUBSYSTEM: Oxidative Phosphorylation</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2dmmq8_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_2dmmql8_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NADK" name="NAD kinase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2683</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NADN" name="NAD nucleosidase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ncam_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adprib_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NADPHQR2" name="NADPH Quinone Reductase Ubiquinone 8 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3179</p>
- <p>SUBSYSTEM: Oxidative Phosphorylation</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_q8_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_q8h2_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NADPHQR3" name="NADPH Quinone Reductase Menaquinone 8 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3179</p>
- <p>SUBSYSTEM: Oxidative Phosphorylation</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_mqn8_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_mql8_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NADPHQR4" name="NADPH Quinone Reductase 2 Demethylmenaquinone 8 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3179</p>
- <p>SUBSYSTEM: Oxidative Phosphorylation</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2dmmq8_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_2dmmql8_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NADPPPS" name="NADP phosphatase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NADS1" name="NAD synthase nh3 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1310</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_dnad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nh4_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NADTRHD" name="NAD transhydrogenase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM4126 or ( STM1480 and STM1479 ) )</p>
- <p>SUBSYSTEM: Oxidative Phosphorylation</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NAMNPP" name="nicotinic acid mononucleotide pyrophosphorylase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1004</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nac_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_prpp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nicrnt_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NAt3_1p5pp" name="sodium proton antiporter HNA is 15 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1806</p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_na1_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="3" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_na1_p" stoichiometry="2" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="3" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NAt3_2pp" name="sodium proton antiporter HNA is 2 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0039</p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_na1_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="2" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_na1_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NAtex" name="sodium transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_na1_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_na1_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NDPK1" name="nucleoside diphosphate kinase ATPGDP " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0488 or STM2526 )</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_gdp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gtp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NDPK2" name="nucleoside diphosphate kinase ATPUDP " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0488 or STM2526 )</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_udp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_utp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NDPK3" name="nucleoside diphosphate kinase ATPCDP " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0488 or STM2526 )</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_cdp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ctp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NDPK4" name="nucleoside diphosphate kinase ATPdTDP " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2526 or STM0488 )</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_dtdp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_dttp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NDPK5" name="nucleoside diphosphate kinase ATPdGDP " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2526 or STM0488 )</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dgdp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_dgtp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NDPK6" name="nucleoside diphosphate kinase ATPdUDP " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0488 or STM2526 )</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_dudp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dutp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NDPK7" name="nucleoside diphosphate kinase ATPdCDP " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2526 or STM0488 )</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_dcdp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dctp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NDPK8" name="nucleoside diphosphate kinase ATPdADP " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2526 or STM0488 )</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dadp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_datp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NH4tex" name="ammonia transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nh4_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nh4_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NH4tpp" name="ammonia reversible transport periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( s0001 or STM0463 )</p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nh4_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nh4_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NHFRBO" name="NADHflavorubredoxin oxidoreductase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2840 and STM2841 )</p>
- <p>SUBSYSTEM: Nitrogen Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_no_c" stoichiometry="2" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_n2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NI2abcpp" name="Nickle Ni2 ABC transporter periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3576</p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ni2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ni2_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NI2t3pp" name="nickle Ni2 transport out via proton antiport periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM4061 or STM0758 )</p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ni2_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ni2_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NI2tex" name="nickel transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ni2_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ni2_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NMNAT" name="nicotinamide nucleotide adenylyltransferase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0645 or STM4580.S )</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nmn_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NMNDA" name="nicotinamide nucleotide amidase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nmn_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nh4_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nicrnt_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NMNN" name="NMN nucleosidase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nmn_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ncam_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_r5p_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NMNPtpp" name="NMN permease periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0757</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nmn_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nmn_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NMNt7pp" name="NMN transport via NMN glycohydrolase periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nmn_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_r5p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ncam_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NMNtex" name="NMN transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nmn_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nmn_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NNAM" name="nicotinamidase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1293</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ncam_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nac_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nh4_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NNATr" name="nicotinate nucleotide adenylyltransferase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0645</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nicrnt_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_dnad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NNDPR" name="nicotinate nucleotide diphosphorylase carboxylating " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0145</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_prpp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_quln_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nicrnt_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NO2t2rpp" name="nitrite transport in via proton symport reversible periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM1765 or STM3476 )</p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_no2_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_no2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NO2tex" name="nitrite transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_no2_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_no2_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NO3R1bpp" name="Nitrate reductase Ubiquinol 8 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2256 and STM2259 and STM2255 and STM2258 and STM2257 )</p>
- <p>SUBSYSTEM: Nitrogen Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_no3_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_q8h2_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_q8_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_no2_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NO3R1pp" name="Nitrate reductase Ubiquinol 8 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( ( STM1580 and STM1579 and STM1578 and STM1577 ) or ( STM1764 and STM1763 and STM1762 and STM1761 ) )</p>
- <p>SUBSYSTEM: Oxidative Phosphorylation</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_q8h2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_no3_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_q8_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_no2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NO3R2bpp" name="Nitrate reductase Menaquinol 8 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2255 and STM2256 and STM2259 and STM2260 )</p>
- <p>SUBSYSTEM: Nitrogen Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_no3_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_mql8_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_no2_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_mqn8_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NO3R2pp" name="Nitrate reductase Menaquinol 8 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( ( STM1580 and STM1579 and STM1578 and STM1577 ) or ( STM1764 and STM1763 and STM1762 and STM1761 ) )</p>
- <p>SUBSYSTEM: Oxidative Phosphorylation</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_no3_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_mql8_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_no2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="2" constant="true"/>
- <speciesReference species="M_mqn8_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NO3t7pp" name="nitrate transport in via nitrite antiport periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM1765 or STM1576 )</p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_no2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_no3_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_no3_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_no2_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NO3tex" name="nitrate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM2267 or STM1473 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_no3_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_no3_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NODOx" name="nitric oxide dioxygenase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2556</p>
- <p>SUBSYSTEM: Nitrogen Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_o2_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_no_c" stoichiometry="2" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_no3_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NODOy" name="nitric oxide dioxygenase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2556</p>
- <p>SUBSYSTEM: Nitrogen Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_o2_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_no_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_no3_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NOtex" name="nitric oxide transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_no_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_no_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NOtpp" name="NO transport diffusion " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: s0001</p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_no_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_no_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NPHS" name="naphthoate synthase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2307</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_sbzcoa_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dhna_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NTD1" name="5 nucleotidase dUMP " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2332 or STM2927 or STM4559.S )</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_dump_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_duri_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NTD10" name="5 nucleotidase XMP " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2927</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_xmp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_xtsn_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NTD10pp" name="5 nucleotidase XMP " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0494 or STM4249 )</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_xmp_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_xtsn_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NTD11" name="5 nucleotidase IMP " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2927</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_imp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ins_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NTD11pp" name="5 nucleotidase IMP " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM4249 or STM0494 )</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_imp_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ins_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NTD12" name="5 nucleotidase dIMP " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2332 or STM2927 )</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dimp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_din_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NTD12pp" name="5 nucleotidase dIMP periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0494 or STM4249 )</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_dimp_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_din_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NTD1pp" name="5 nucleotidase dUMP " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0494 or STM4249 )</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dump_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_duri_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NTD2" name="5 nucleotidase UMP " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM4559.S or STM2927 )</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ump_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_uri_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NTD2pp" name="5 nucleotidase UMP " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM4249 or STM0494 )</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ump_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_uri_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NTD3" name="5 nucleotidase dCMP " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2927 or STM2332 )</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_dcmp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_dcyt_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NTD3pp" name="5 nucleotidase dCMP " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0494 or STM4249 )</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dcmp_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dcyt_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NTD4" name="5 nucleotidase CMP " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2927</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cmp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cytd_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NTD4pp" name="5 nucleotidase CMP " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM4249 or STM0494 )</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_cmp_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cytd_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NTD5" name="5 nucleotidase dTMP " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2332 or STM2927 or STM4559.S )</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_dtmp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_thymd_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NTD5pp" name="5 nucleotidase dTMP " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0494 or STM4249 )</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dtmp_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_thymd_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NTD6" name="5 nucleotidase dAMP " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2332 or STM2927 )</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_damp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_dad__2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NTD6pp" name="5 nucleotidase dAMP " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM4249 or STM0494 )</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_damp_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_dad__2_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NTD7" name="5 nucleotidase AMP " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2927</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adn_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NTD7pp" name="5 nucleotidase AMP " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0494 or STM4249 )</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_amp_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adn_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NTD8" name="5 nucleotidase dGMP " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2332 or STM2927 )</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dgmp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_dgsn_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NTD8pp" name="5 nucleotidase dGMP " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0494 or STM4249 )</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dgmp_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_dgsn_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NTD9" name="5 nucleotidase GMP " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2927</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_gmp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gsn_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NTD9pp" name="5 nucleotidase GMP " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM4249 or STM0494 )</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_gmp_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_gsn_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NTP1" name="nucleoside triphosphatase ATP " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0659 or STM4349 )</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NTP10" name="nucleoside triphosphatase ITP " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM4584 or STM4349 )</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_itp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_idp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NTP11" name="nucleoside triphosphatase dITP " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4584</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ditp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_didp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NTP12" name="nucleoside triphosphatase XTP " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4584</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_xtp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_xdp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NTP3" name="nucleoside triphosphatase GTP " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4349</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gtp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_gdp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NTP5" name="nucleoside triphosphatase CTP " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4349</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ctp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cdp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NTPP1" name="Nucleoside triphosphate pyrophosphorylase dgtp " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2954 or STM0137 )</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dgtp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_dgmp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NTPP10" name="Nucleoside triphosphate pyrophosphorylase ditp " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3103</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ditp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_dimp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NTPP11" name="Nucleoside triphosphate pyrophosphorylase xtp " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3103</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_xtp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_xmp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NTPP2" name="Nucleoside triphosphate pyrophosphorylase gtp " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0137 or STM2954 )</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gtp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_gmp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NTPP3" name="Nucleoside triphosphate pyrophosphorylase dctp " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2954 or STM2295 or STM1301 )</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_dctp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_dcmp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NTPP4" name="Nucleoside triphosphate pyrophosphorylase ctp " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2954 or STM1301 )</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ctp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cmp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NTPP5" name="Nucleoside triphosphate pyrophosphorylase datp " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2954 or STM1900 )</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_datp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_damp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NTPP6" name="Nucleoside triphosphate pyrophosphorylase atp " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2954</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NTPP7" name="Nucleoside triphosphate pyrophosphorylase dttp " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2295 or STM2954 )</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dttp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_dtmp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NTPP8" name="Nucleoside triphosphate pyrophosphorylase utp " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2954</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_utp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ump_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NTPP9" name="Nucleoside triphosphate pyrophosphorylase itp " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3103</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_itp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_imp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NTPTP1" name="Nucleoside triphosphate tripolyhydrolase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0208</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dgtp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pppi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dgsn_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NTPTP2" name="Nucleoside triphosphate tripolyhydrolase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0208</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gtp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_gsn_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NTRIR2x" name="nitrite Reductase NADH " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3474 and STM3475 )</p>
- <p>SUBSYSTEM: Oxidative Phosphorylation</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nadh_c" stoichiometry="3" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="5" constant="true"/>
- <speciesReference species="M_no2_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nad_c" stoichiometry="3" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_nh4_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NTRIR3pp" name="nitrite Reductase Ubiquinole 8 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM4277 and STM4278.S and STM4279 and STM4280 )</p>
- <p>SUBSYSTEM: Nitrogen Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_no2_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="2" constant="true"/>
- <speciesReference species="M_q8h2_c" stoichiometry="3" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_q8_c" stoichiometry="3" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="2" constant="true"/>
- <speciesReference species="M_nh4_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NTRIR4pp" name="nitrite Reductase Menaquinole 8 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM4277 and STM4278.S and STM4279 and STM4280 )</p>
- <p>SUBSYSTEM: Nitrogen Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_mql8_c" stoichiometry="3" constant="true"/>
- <speciesReference species="M_no2_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="2" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_mqn8_c" stoichiometry="3" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="2" constant="true"/>
- <speciesReference species="M_nh4_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_O2Stex" name="superoxide anion transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_o2s_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_o2s_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_O2tex" name="oxygen transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_o2_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_o2_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_O2tpp" name="o2 transport via diffusion periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: s0001</p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_o2_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_o2_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_OAADC" name="oxaloacetate decarboxylase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1884</p>
- <p>SUBSYSTEM: Pyruvate Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_oaa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_OBTFL" name="2 Oxobutanoate formate lyase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( ( ( STM0970 and STM0973 ) and STM2646 ) or ( STM0970 and STM0973 ) or ( STM0970 and STM3241 ) )</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2obut_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_for_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppcoa_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_OCDCAtexi" name="Octadecanoate transport via facilitated irreversible diffusion extracellular to periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2391</p>
- <p>SUBSYSTEM: Transport Outer Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ocdca_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ocdca_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_OCDCEAtexi" name="Octadecenoate n C181 transport via facilitated irreversible diffusion extracellular to periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2391</p>
- <p>SUBSYSTEM: Transport Outer Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ocdcea_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ocdcea_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_OCTAtex" name="Octanoate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_octa_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_octa_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_OCTDPS" name="Octaprenyl pyrophosphate synthase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3305</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_frdp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ipdp_c" stoichiometry="5" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_octdp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="5" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ODECOAI" name="Octadecenoyl coa cis trans isomerization" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3983</p>
- <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_odecoa_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_od2coa_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_OHPBAT" name="O Phospho 4 hydroxy L threonine2 oxoglutarate aminotransferase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0977</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ohpb_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_akg_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_phthr_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_OHPHM" name="2 octaprenyl 6 hydroxyphenol methylase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2276</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_2ohph_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_amet_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_2omph_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ahcys_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_OMBZLM" name="2 Octaprenyl 6 methoxy benzoquinol methylase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3970</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_amet_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2ombzl_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_2ommbl_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ahcys_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_OMCDC" name="2 Oxo 4 methyl 3 carboxypentanoate decarboxylation" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0112</p>
- <p>SUBSYSTEM: Valine Leucine and Isoleucine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_3c4mop_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_4mop_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_OMMBLHX" name="2 Octaprenyl 3 methyl 6 methoxy 1 4 benzoquinol hydroxylase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0671</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_2ommbl_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_o2_c" stoichiometry="0.5" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_2omhmbl_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_OMMBLHX3" name="2 Octaprenyl 3 methyl 6 methoxy 1 4 benzoquinol hydroxylase anaerobic " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="3" constant="true"/>
- <speciesReference species="M_2ommbl_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_2omhmbl_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="3" constant="true"/>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_OMPDC" name="orotidine 5 phosphate decarboxylase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1707</p>
- <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_orot5p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ump_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_OMPHHX" name="2 octaprenyl 6 methoxyphenol hydroxylase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3057</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_o2_c" stoichiometry="0.5" constant="true"/>
- <speciesReference species="M_2omph_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_2ombzl_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_OMPHHX3" name="2 octaprenyl 6 methoxyphenol hydroxylase anaerobic " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2omph_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="3" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_2ombzl_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="3" constant="true"/>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_OPHBDC" name="Octaprenyl hydroxybenzoate decarboxylase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3978 or STM2356 )</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_3ophb_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2oph_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_OPHHX" name="2 Octaprenylphenol hydroxylase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3972</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_o2_c" stoichiometry="0.5" constant="true"/>
- <speciesReference species="M_2oph_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_2ohph_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_OPHHX3" name="2 Octaprenylphenol hydroxylase anaerobic " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_2oph_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="3" constant="true"/>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_2ohph_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="3" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ORNDC" name="Ornithine Decarboxylase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3114 or STM0701 )</p>
- <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_orn_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ptrc_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ORNabcpp" name="ornithine transport via ABC system periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2355 and STM2352 and STM2351 and STM2353 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_orn_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_orn_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ORNtex" name="ornithine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_orn_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_orn_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_OROTt2_2pp" name="Orotate transport via proton symport 2 H periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3614</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_orot_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="2" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_orot_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_OAAt2_2pp" name="Oxaloacetate transport via proton symport 2 H periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3614</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="2" constant="true"/>
- <speciesReference species="M_oaa_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_oaa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_OROTtex" name="Orotate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM1473 or STM0999 or STM0320 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_orot_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_orot_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_OAAtex" name="Oxaloacetate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM1473 or STM0999 or STM0320 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_oaa_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_oaa_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ORPT" name="orotate phosphoribosyltransferase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3733</p>
- <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_orot5p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_prpp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_orot_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_OXAMTC" name="oxamate transcarbamoylase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Unassigned</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_oxur_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cbp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_oxam_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_OXGDC2" name="2 oxoglutarate decarboxylase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2309</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_thmpp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_akg_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ssaltpp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_P5CD" name="1 pyrroline 5 carboxylate dehydrogenase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: s0001</p>
- <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_1pyr5c_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_P5CR" name="pyrroline 5 carboxylate reductase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0386</p>
- <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_1pyr5c_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pro__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PA120abcpp" name="phosphatidate transport via ABC system n C120 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0984</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pa120_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pa120_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PA140abcpp" name="phosphatidate transport via ABC system n C140 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0984</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pa140_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pa140_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PA141abcpp" name="phosphatidate transport via ABC system n C141 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0984</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pa141_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pa141_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PA160abcpp" name="phosphatidate transport via ABC system n C160 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0984</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pa160_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pa160_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PA161abcpp" name="phosphatidate transport via ABC system n C161 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0984</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pa161_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pa161_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PA180abcpp" name="phosphatidate transport via ABC system n C180 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0984</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pa180_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pa180_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PA181abcpp" name="phosphatidate transport via ABC system n C181 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0984</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pa181_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pa181_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PACALDt2rpp" name="phenylacetaldehyde reversible transport via proton symport periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pacald_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pacald_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PACALDtex" name="phenethylacetaldehyde transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pacald_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pacald_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PANTS" name="pantothenate synthase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0181</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pant__R_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ala__B_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pnto__R_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PAPA120" name="Phosphatidate phosphatase n C120 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1710</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pa120_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_12dgr120_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PAPA120pp" name="Phosphatidate phosphatase periplasmic n C120 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1710</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pa120_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_12dgr120_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PAPA140" name="Phosphatidate phosphatase n C140 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1710</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pa140_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_12dgr140_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PAPA140pp" name="Phosphatidate phosphatase periplasmic n C140 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1710</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pa140_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_12dgr140_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PAPA141" name="Phosphatidate phosphatase n C141 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1710</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pa141_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_12dgr141_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PAPA141pp" name="Phosphatidate phosphatase periplasmic n C141 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1710</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pa141_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_12dgr141_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PAPA160" name="Phosphatidate phosphatase n C160 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1710</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pa160_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_12dgr160_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PAPA160pp" name="Phosphatidate phosphatase periplasmic n C160 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1710</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pa160_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_12dgr160_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PAPA161" name="Phosphatidate phosphatase n C161 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1710</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pa161_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_12dgr161_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PAPA161pp" name="Phosphatidate phosphatase periplasmic n C161 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1710</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pa161_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_12dgr161_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PAPA180" name="Phosphatidate phosphatase n C180 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1710</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pa180_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_12dgr180_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PAPA180pp" name="Phosphatidate phosphatase periplasmic n C180 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1710</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pa180_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_12dgr180_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PAPA181" name="Phosphatidate phosphatase n C181 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1710</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pa181_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_12dgr181_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PAPA181pp" name="Phosphatidate phosphatase periplasmic n C181 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1710</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pa181_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_12dgr181_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PAPPT3" name="phospho N acetylmuramoyl pentapeptide transferase meso 2 6 diaminopimelate " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0125</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_udcpp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ugmda_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_uagmda_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ump_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PAPSR" name="phosphoadenylyl sulfate reductase thioredoxin " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( ( STM2946 and STM2649 ) or ( STM2946 and STM3915 ) )</p>
- <p>SUBSYSTEM: Cysteine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_trdrd_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_paps_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_so3_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pap_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_trdox_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PAPSR2" name="phosphoadenylyl sulfate reductase glutaredoxin " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( ( STM2946 and STM0872 ) or ( STM2946 and STM1165 ) or ( STM2946 and STM1433 ) or ( STM2946 and STM3702 ) )</p>
- <p>SUBSYSTEM: Cysteine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_grxrd_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_paps_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_so3_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_grxox_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_pap_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PDH" name="pyruvate dehydrogenase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0152 and STM0153 and STM0154 )</p>
- <p>SUBSYSTEM: GlycolysisGluconeogenesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_accoa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PDX5PO2" name="pyridoxine 5 phosphate oxidase anaerboic" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pdx5p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pydx5p_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PDX5POi" name="pyridoxine 5 phosphate oxidase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1448</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pdx5p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_o2_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h2o2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pydx5p_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PDX5PS" name="Pyridoxine 5 phosphate synthase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( ( STM0091 or STM0163 ) and STM2578 )</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dxyl5p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_phthr_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_pdx5p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PDXPP" name="Pyridoxine 5 phosphate phosphatase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pdx5p_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pydxn_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PE120abcpp" name="phosphatidylethanolamine transport via ABC system n C120 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0984</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pe120_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pe120_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PE140abcpp" name="phosphatidylethanolamine transport via ABC system n C140 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0984</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pe140_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pe140_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PE141abcpp" name="phosphatidylethanolamine transport via ABC system n C141 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0984</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pe141_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pe141_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PE160abcpp" name="phosphatidylethanolamine transport via ABC system n C160 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0984</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pe160_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pe160_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PE161abcpp" name="phosphatidylethanolamine transport via ABC system n C161 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0984</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pe161_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pe161_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PE180abcpp" name="phosphatidylethanolamine transport via ABC system n C180 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0984</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pe180_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pe180_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PE181abcpp" name="phosphatidylethanolamine transport via ABC system n C181 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0984</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pe181_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pe181_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PEAMNtex" name="phenethylamine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_peamn_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_peamn_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PERD" name="Erythronate 4 phosphate 4per dehydrogenase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2370</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_4per_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ohpb_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PETNT161pp" name="phosphoethanolamine transferase c C161 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3635</p>
- <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_lipa_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pe161_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_enlipa_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_12dgr161_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PETNT181pp" name="phosphoethanolamine transferase c C161 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3635</p>
- <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_lipa_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pe181_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_enlipa_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_12dgr181_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PFK" name="phosphofructokinase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM4062 or STM1326 )</p>
- <p>SUBSYSTEM: GlycolysisGluconeogenesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_f6p_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_fdp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PFK_2" name="Phosphofructokinase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM4062 or STM3257 or STM1326 )</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_tag6p__D_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_tagdp__D_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PFL" name="pyruvate formate lyase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( ( STM0970 and STM0973 ) or ( STM0970 and STM3241 ) or ( STM4114 and STM4115 ) or ( STM0843 and STM0844 ))</p>
- <p>SUBSYSTEM: Pyruvate Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_accoa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_for_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PG120abcpp" name="phosphatidylglycerol transport via ABC system n C120 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0984</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pg120_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pg120_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PG140abcpp" name="phosphatidylglycerol transport via ABC system n C140 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0984</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pg140_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pg140_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PG141abcpp" name="phosphatidylglycerol transport via ABC system n C141 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0984</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pg141_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pg141_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PG160abcpp" name="phosphatidylglycerol transport via ABC system n C160 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0984</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pg160_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pg160_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PG161abcpp" name="phosphatidylglycerol transport via ABC system n C161 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0984</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pg161_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pg161_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PG180abcpp" name="phosphatidylglycerol transport via ABC system n C180 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0984</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pg180_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pg180_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PG181abcpp" name="phosphatidylglycerol transport via ABC system n C181 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0984</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pg181_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pg181_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PGAMT" name="phosphoglucosamine mutase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3294</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_gam1p_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_gam6p_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PGCD" name="phosphoglycerate dehydrogenase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3062</p>
- <p>SUBSYSTEM: Glycine and Serine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_3pg_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_3php_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PGI" name="glucose 6 phosphate isomerase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4221</p>
- <p>SUBSYSTEM: GlycolysisGluconeogenesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_g6p_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_f6p_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PGK" name="phosphoglycerate kinase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3069</p>
- <p>SUBSYSTEM: GlycolysisGluconeogenesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_3pg_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_13dpg_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PGL" name="6 phosphogluconolactonase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0785</p>
- <p>SUBSYSTEM: Pentose Phosphate Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_6pgl_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_6pgc_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PGLYCP" name="Phosphoglycolate phosphatase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3482</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_2pglyc_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glyclt_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PGM" name="phosphoglycerate mutase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3704 or STM4585 or STM0772 )</p>
- <p>SUBSYSTEM: GlycolysisGluconeogenesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_2pg_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_3pg_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PGMT" name="phosphoglucomutase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0698 or STM2820 )</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_g1p_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_g6p_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PGP120abcpp" name="phosphatidylglycerophosphate transport via ABC system n C120 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0984</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pgp120_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pgp120_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PGP140abcpp" name="phosphatidylglycerophosphate transport via ABC system n C140 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0984</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pgp140_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pgp140_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PGP141abcpp" name="phosphatidylglycerophosphate transport via ABC system n C141 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0984</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pgp141_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pgp141_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PGP160abcpp" name="phosphatidylglycerophosphate transport via ABC system n C160 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0984</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pgp160_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pgp160_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PGP161abcpp" name="phosphatidylglycerophosphate transport via ABC system n C161 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0984</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pgp161_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pgp161_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PGP180abcpp" name="phosphatidylglycerophosphate transport via ABC system n C180 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0984</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pgp180_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pgp180_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PGP181abcpp" name="phosphatidylglycerophosphate transport via ABC system n C181 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0984</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pgp181_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pgp181_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PGPP120" name="phosphatidylglycerol phosphate phosphatase n C140 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0420 or STM1710 )</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pgp120_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pg120_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PGPP120pp" name="phosphatidylglycerol phosphate phosphatase periplasm n C140 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM1710 or STM0420 )</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pgp120_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pg120_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PGPP140" name="phosphatidylglycerol phosphate phosphatase n C140 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0420 or STM1710 )</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pgp140_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pg140_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PGPP140pp" name="phosphatidylglycerol phosphate phosphatase periplasm n C140 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM1710 or STM0420 )</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pgp140_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pg140_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PGPP141" name="phosphatidylglycerol phosphate phosphatase n C141 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0420 or STM1710 )</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pgp141_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pg141_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PGPP141pp" name="phosphatidylglycerol phosphate phosphatase periplasm n C141 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0420 or STM1710 )</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pgp141_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pg141_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PGPP160" name="phosphatidylglycerol phosphate phosphatase n C160 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0420 or STM1710 )</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pgp160_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pg160_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PGPP160pp" name="phosphatidylglycerol phosphate phosphatase periplasm n C160 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0420 or STM1710 )</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pgp160_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pg160_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PGPP161" name="phosphatidylglycerol phosphate phosphatase n C161 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0420 or STM1710 )</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pgp161_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pg161_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PGPP161pp" name="phosphatidylglycerol phosphate phosphatase periplasm n C161 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM1710 or STM0420 )</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pgp161_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pg161_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PGPP180" name="phosphatidylglycerol phosphate phosphatase n C180 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0420 or STM1710 )</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pgp180_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pg180_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PGPP180pp" name="phosphatidylglycerol phosphate phosphatase periplasm n C180 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM1710 or STM0420 )</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pgp180_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pg180_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PGPP181" name="phosphatidylglycerol phosphate phosphatase n C181 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM1710 or STM0420 )</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pgp181_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pg181_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PGPP181pp" name="phosphatidylglycerol phosphate phosphatase periplasm n C181 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0420 or STM1710 )</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pgp181_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pg181_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PGSA120" name="Phosphatidylglycerol synthase n C120 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1945</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_glyc3p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cdpdddecg_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cmp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pgp120_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PGSA140" name="Phosphatidylglycerol synthase n C140 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1945</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_glyc3p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cdpdtdecg_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cmp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pgp140_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PGSA141" name="Phosphatidylglycerol synthase n C141 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1945</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_glyc3p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cdpdtdec7eg_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cmp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pgp141_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PGSA160" name="Phosphatidylglycerol synthase n C160 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1945</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_glyc3p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cdpdhdecg_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cmp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pgp160_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PGSA161" name="Phosphatidylglycerol synthase n C161 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1945</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_glyc3p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cdpdhdec9eg_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cmp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pgp161_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PGSA180" name="Phosphatidylglycerol synthase n C180 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1945</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_cdpdodecg_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glyc3p_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cmp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pgp180_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PGSA181" name="Phosphatidylglycerol synthase n C181 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1945</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_glyc3p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cdpdodec11eg_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cmp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pgp181_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PHEMEabcpp" name="protoheme transport via ABC system periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2254 and STM2253 and STM2252 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pheme_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pheme_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PHEMEtiex" name="protoheme transport irreversible out via diffusion periplasm to extracellular " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Transport Outer Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pheme_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pheme_e" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PHETA1" name="phenylalanine transaminase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3903 or STM0998 or STM4248 )</p>
- <p>SUBSYSTEM: Tyrosine Tryptophan and Phenylalanine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_phe__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_akg_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_phpyr_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PHETRS" name="Phenylalanyl tRNA synthetase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM1338 and STM1337 )</p>
- <p>SUBSYSTEM: tRNA Charging</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_phe__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_trnaphe_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_phetrna_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PHEt2rpp" name="L phenylalanine reversible transport via proton symport periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0568 or STM0150 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_phe__L_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_phe__L_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PHEtex" name="L phenylalanine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_phe__L_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_phe__L_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PIt2rpp" name="phosphate reversible transport via symport periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3589</p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PItex" name="phosphate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pi_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PIuabcpp" name="phosphate transport via ABC system uptake periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3855 and STM3854 and STM3856 and STM3857 )</p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PLIPA1A120pp" name="Phospholipase A1 phosphatidate n C120 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3957</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pa120_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_2ddecg3p_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ddca_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PLIPA1A140pp" name="Phospholipase A1 phosphatidate n C140 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3957</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pa140_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ttdca_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2tdecg3p_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PLIPA1A141pp" name="Phospholipase A1 phosphatidate n C141 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3957</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pa141_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_2tdec7eg3p_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ttdcea_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PLIPA1A160pp" name="Phospholipase A1 phosphatidate n C160 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3957</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pa160_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_2hdecg3p_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_hdca_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PLIPA1A161pp" name="Phospholipase A1 phosphatidate n C161 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3957</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pa161_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_hdcea_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2hdec9eg3p_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PLIPA1A180pp" name="Phospholipase A1 phosphatidate n C180 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3957</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pa180_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_2odecg3p_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ocdca_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PLIPA1A181pp" name="Phospholipase A1 phosphatidate n C181 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3957</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pa181_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_2odec11eg3p_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ocdcea_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PLIPA1E120pp" name="Phospholipase A1 phosphatidylethanolamine n C120 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3957</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pe120_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ddca_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2agpe120_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PLIPA1E140pp" name="Phospholipase A1 phosphatidylethanolamine n C140 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3957</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pe140_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2agpe140_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ttdca_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PLIPA1E141pp" name="Phospholipase A1 phosphatidylethanolamine n C141 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3957</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pe141_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_2agpe141_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ttdcea_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PLIPA1E160pp" name="Phospholipase A1 phosphatidylethanolamine n C160 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3957</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pe160_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_2agpe160_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_hdca_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PLIPA1E161pp" name="Phospholipase A1 phosphatidylethanolamine n C161 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3957</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pe161_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_2agpe161_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_hdcea_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PLIPA1E180pp" name="Phospholipase A1 phosphatidylethanolamine n C180 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3957</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pe180_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ocdca_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2agpe180_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PLIPA1E181pp" name="Phospholipase A1 phosphatidylethanolamine n C181 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3957</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pe181_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_2agpe181_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ocdcea_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PLIPA1G120pp" name="Phospholipase A1 phosphatidylglycerol n C120 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3957</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pg120_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ddca_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2agpg120_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PLIPA1G140pp" name="Phospholipase A1 phosphatidylglycerol n C140 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3957</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pg140_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ttdca_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2agpg140_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PLIPA1G141pp" name="Phospholipase A1 phosphatidylglycerol n C141 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3957</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pg141_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ttdcea_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2agpg141_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PLIPA1G160pp" name="Phospholipase A1 phosphatidylglycerol n C160 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3957</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pg160_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2agpg160_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_hdca_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PLIPA1G161pp" name="Phospholipase A1 phosphatidylglycerol n C161 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3957</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pg161_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2agpg161_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_hdcea_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PLIPA1G180pp" name="Phospholipase A1 phosphatidylglycerol n C180 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3957</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pg180_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2agpg180_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ocdca_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PLIPA1G181pp" name="Phospholipase A1 phosphatidylglycerol n C181 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3957</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pg181_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2agpg181_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ocdcea_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PLIPA2A120pp" name="Phospholipase A2 phosphatidate n C120 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3957</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pa120_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_1ddecg3p_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ddca_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PLIPA2A140pp" name="Phospholipase A2 phosphatidate n C140 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3957</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pa140_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_1tdecg3p_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ttdca_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PLIPA2A141pp" name="Phospholipase A2 phosphatidate n C141 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3957</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pa141_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_1tdec7eg3p_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ttdcea_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PLIPA2A160pp" name="Phospholipase A2 phosphatidate n C160 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3957</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pa160_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_1hdecg3p_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_hdca_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PLIPA2A161pp" name="Phospholipase A2 phosphatidate n C161 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3957</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pa161_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_1hdec9eg3p_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_hdcea_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PLIPA2A180pp" name="Phospholipase A2 phosphatidate n C180 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3957</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pa180_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ocdca_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_1odecg3p_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PLIPA2A181pp" name="Phospholipase A2 phosphatidate n C181 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3957</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pa181_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_1odec11eg3p_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ocdcea_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PLIPA2E120pp" name="Phospholipase A2 phosphatidylethanolamine n C120 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3957</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pe120_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ddca_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_1agpe120_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PLIPA2E140pp" name="Phospholipase A2 phosphatidylethanolamine n C140 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3957</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pe140_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_1agpe140_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ttdca_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PLIPA2E141pp" name="Phospholipase A2 phosphatidylethanolamine n C141 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3957</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pe141_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_1agpe141_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ttdcea_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PLIPA2E160pp" name="Phospholipase A2 phosphatidylethanolamine n C160 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3957</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pe160_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_1agpe160_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_hdca_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PLIPA2E161pp" name="Phospholipase A2 phosphatidylethanolamine n C161 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3957</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pe161_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_1agpe161_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_hdcea_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PLIPA2E180pp" name="Phospholipase A2 phosphatidylethanolamine n C180 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3957</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pe180_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ocdca_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_1agpe180_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PLIPA2E181pp" name="Phospholipase A2 phosphatidylethanolamine n C181 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3957</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pe181_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ocdcea_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_1agpe181_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PLIPA2G120pp" name="Phospholipase A2 phosphatidylglycerol n C120 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3957</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pg120_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ddca_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_1agpg120_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PLIPA2G140pp" name="Phospholipase A2 phosphatidylglycerol n C140 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3957</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pg140_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_1agpg140_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ttdca_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PLIPA2G141pp" name="Phospholipase A2 phosphatidylglycerol n C141 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3957</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pg141_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_1agpg141_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ttdcea_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PLIPA2G160pp" name="Phospholipase A2 phosphatidylglycerol n C160 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3957</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pg160_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_1agpg160_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_hdca_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PLIPA2G161pp" name="Phospholipase A2 phosphatidylglycerol n C161 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3957</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pg161_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_hdcea_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_1agpg161_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PLIPA2G180pp" name="Phospholipase A2 phosphatidylglycerol n C180 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3957</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pg180_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_1agpg180_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ocdca_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PLIPA2G181pp" name="Phospholipase A2 phosphatidylglycerol n C181 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3957</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pg181_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_1agpg181_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ocdcea_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PMDPHT" name="pyrimidine phosphatase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_5aprbu_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_4r5au_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PMPK" name="phosphomethylpyrimidine kinase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2146</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_4ampm_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2mahmp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PNTK" name="pantothenate kinase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4139</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pnto__R_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_4ppan_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PNTOt4pp" name="Pantothenate sodium symporter periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3382</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pnto__R_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_na1_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pnto__R_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_na1_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PNTOtex" name="Pantothenate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pnto__R_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pnto__R_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_POX" name="pyruvate oxidase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0935</p>
- <p>SUBSYSTEM: Oxidative Phosphorylation</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_q8_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_q8h2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ac_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PPA" name="inorganic diphosphatase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM4414 or STM2502 or STM2927 )</p>
- <p>SUBSYSTEM: Anaplerotic Reactions</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pi_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PPA2" name="inorganic triphosphatase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2927 or STM2502 )</p>
- <p>SUBSYSTEM: Anaplerotic Reactions</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pppi_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PPAKr" name="Propionate kinase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3242 or STM2057 or STM2337 )</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ppap_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ppa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PPALtex" name="propanal transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ppal_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ppal_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PPALtpp" name="propanal transport via channel periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ppal_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ppal_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PPAt4pp" name="NaPropionate symporter periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1125</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ppa_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_na1_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_na1_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppa_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PPAtex" name="propionate transport via diffusion" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM1473 or STM0999 or STM2267 or STM0320 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ppa_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ppa_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PPBNGS" name="porphobilinogen synthase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0372</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_5aop_c" stoichiometry="2" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ppbng_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PPC" name="phosphoenolpyruvate carboxylase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4119</p>
- <p>SUBSYSTEM: Anaplerotic Reactions</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pep_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_oaa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PPCDC" name="phosphopantothenoylcysteine decarboxylase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3730</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_4ppcys_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pan4p_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PPCK" name="phosphoenolpyruvate carboxykinase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3500</p>
- <p>SUBSYSTEM: Anaplerotic Reactions</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_oaa_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pep_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PPGPPDP" name="guanosine 3 5 bis diphosphate 3 diphosphatase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3742</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppgpp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_gdp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PPK2r" name="polyphosphate kinase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2501</p>
- <p>SUBSYSTEM: Oxidative Phosphorylation</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pppi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PPKr" name="polyphosphate kinase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2501</p>
- <p>SUBSYSTEM: Oxidative Phosphorylation</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PPM" name="phosphopentomutase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4569</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_r1p_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_r5p_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PPM2" name="phosphopentomutase 2 deoxyribose " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4569</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_2dr1p_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_2dr5p_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PPNCL2" name="phosphopantothenate cysteine ligase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3730</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ctp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cys__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_4ppan_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cmp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_4ppcys_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PPND" name="prephenate dehydrogenase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2669</p>
- <p>SUBSYSTEM: Tyrosine Tryptophan and Phenylalanine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pphn_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_34hpp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PPNDH" name="prephenate dehydratase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2667</p>
- <p>SUBSYSTEM: Tyrosine Tryptophan and Phenylalanine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pphn_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_phpyr_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PPPGO" name="protoporphyrinogen oxidase aerobic " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3987</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_o2_c" stoichiometry="1.5" constant="true"/>
- <speciesReference species="M_pppg9_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h2o_c" stoichiometry="3" constant="true"/>
- <speciesReference species="M_ppp9_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PPPGO3" name="protoporphyrinogen oxidase anaerobic " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3987</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pppg9_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fum_c" stoichiometry="3" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ppp9_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_succ_c" stoichiometry="3" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PPPNt2rpp" name="3 phenylpropionate transport via proton symport reversible periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2554</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pppn_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pppn_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PPPNtex" name="3 phenylpropionate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pppn_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pppn_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PPS" name="phosphoenolpyruvate synthase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1349</p>
- <p>SUBSYSTEM: GlycolysisGluconeogenesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pep_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PPTtex" name="Phosphonate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ppt_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ppt_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PRAGSr" name="phosphoribosylglycinamide synthase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4175</p>
- <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_gly_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pram_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gar_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PRAIS" name="phosphoribosylaminoimidazole synthase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2499.S</p>
- <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fpram_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_air_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PRAIi" name="phosphoribosylanthranilate isomerase irreversible " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1725</p>
- <p>SUBSYSTEM: Tyrosine Tryptophan and Phenylalanine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pran_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_2cpr5p_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PRAMPC" name="phosphoribosyl AMP cyclohydrolase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2078</p>
- <p>SUBSYSTEM: Histidine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_prbamp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_prfp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PRASCSi" name="phosphoribosylaminoimidazolesuccinocarboxamide synthase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2487</p>
- <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_5aizc_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_asp__L_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_25aics_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PRATPP" name="phosphoribosyl ATP pyrophosphatase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2078</p>
- <p>SUBSYSTEM: Histidine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_prbatp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_prbamp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PRFGS" name="phosphoribosylformylglycinamidine synthase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2565</p>
- <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_gln__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fgam_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fpram_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PRMICI" name="1 5 phosphoribosyl 5 5 phosphoribosylamino methylideneamino imidazole 4 carboxamide isomerase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2076</p>
- <p>SUBSYSTEM: Histidine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_prfp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_prlp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PROD2" name="Proline dehydrogenase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: s0001</p>
- <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pro__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fad_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_fadh2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_1pyr5c_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PROGLYabcpp" name="L Prolinylglycine Pro Gly transport via ABC system periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3630 and STM3629 and STM3628 and STM3627 and STM3626 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_progly_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_progly_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PROGLYtex" name="L Prolinylglycine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_progly_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_progly_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PROTRS" name="Prolyl tRNA synthetase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0242</p>
- <p>SUBSYSTEM: tRNA Charging</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_trnapro_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pro__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_protrna_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PROabcpp" name="L proline transport via ABC system periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2809 and STM2810 and STM2811 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pro__L_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pro__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PROt4pp" name="NaProline L symporter periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1125</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pro__L_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_na1_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pro__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_na1_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PROtex" name="L proline transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pro__L_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pro__L_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PRPPS" name="phosphoribosylpyrophosphate synthetase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1780</p>
- <p>SUBSYSTEM: Histidine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_r5p_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_prpp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PSCLYStex" name="psicoselysine transporter via diffusion extracellular " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2267 or STM1473 or STM0320 or STM0999 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_psclys_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_psclys_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PSCVT" name="3 phosphoshikimate 1 carboxyvinyltransferase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0978</p>
- <p>SUBSYSTEM: Tyrosine Tryptophan and Phenylalanine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pep_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_skm5p_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_3psme_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PSD120" name="Phosphatidylserine decarboxylase n C120 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4348</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ps120_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pe120_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PSD140" name="Phosphatidylserine decarboxylase n C140 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4348</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ps140_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pe140_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PSD141" name="Phosphatidylserine decarboxylase n C141 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4348</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ps141_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pe141_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PSD160" name="Phosphatidylserine decarboxylase n C160 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4348</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ps160_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pe160_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PSD161" name="Phosphatidylserine decarboxylase n C161 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4348</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ps161_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pe161_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PSD180" name="Phosphatidylserine decarboxylase n C180 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4348</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ps180_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pe180_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PSD181" name="Phosphatidylserine decarboxylase n C181 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4348</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ps181_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pe181_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PSERT" name="phosphoserine transaminase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0977</p>
- <p>SUBSYSTEM: Glycine and Serine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_3php_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pser__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_akg_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PSERtex" name="phospho L serine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pser__L_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pser__L_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PSP_L" name="phosphoserine phosphatase L serine " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4578</p>
- <p>SUBSYSTEM: Glycine and Serine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pser__L_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ser__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PSP_Lpp" name="phospho L serine phosphatase periplasmic " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4249</p>
- <p>SUBSYSTEM: Glycine and Serine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pser__L_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ser__L_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PSSA120" name="Phosphatidylserine syntase n C120 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2652</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ser__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cdpdddecg_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cmp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ps120_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PSSA140" name="Phosphatidylserine syntase n C140 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2652</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ser__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cdpdtdecg_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cmp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ps140_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PSSA141" name="Phosphatidylserine syntase n C141 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2652</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ser__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cdpdtdec7eg_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ps141_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cmp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PSSA160" name="Phosphatidylserine syntase n C160 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2652</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ser__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cdpdhdecg_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cmp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ps160_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PSSA161" name="Phosphatidylserine syntase n C161 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2652</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ser__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cdpdhdec9eg_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cmp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ps161_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PSSA180" name="Phosphatidylserine syntase n C180 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2652</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_cdpdodecg_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ser__L_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cmp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ps180_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PSSA181" name="Phosphatidylserine syntase n C181 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2652</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ser__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cdpdodec11eg_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ps181_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cmp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PTA2" name="Phosphate acetyltransferase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2338 ) or ( STM2047 )</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ppcoa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ppap_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PTAr" name="phosphotransacetylase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2338 or STM2466 )</p>
- <p>SUBSYSTEM: Pyruvate Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_accoa_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_actp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PTHRpp" name="phospho L threonine phosphatase periplasmic " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4249</p>
- <p>SUBSYSTEM: Threonine and Lysine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_thrp_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_thr__L_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PTPATi" name="pantetheine phosphate adenylyltransferase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3725</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pan4p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_dpcoa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PTRCORNt7pp" name="putrescineornithine antiporter periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0700</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_orn_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ptrc_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ptrc_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_orn_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PTRCTA" name="Putrescine Transaminase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3218</p>
- <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ptrc_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_akg_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_4abutn_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PTRCabcpp" name="putrescine transport via ABC system periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( ( STM0877 and STM0878 and STM0879 and STM0880 ) or ( STM1226 and STM1225 and STM1223 and STM1222 ) )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ptrc_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ptrc_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PTRCt2pp" name="putrescine transport in via proton symport" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0700</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ptrc_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ptrc_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PTRCtex" name="putrescine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ptrc_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ptrc_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PUNP1" name="purine nucleoside phosphorylase Adenosine " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4570</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_adn_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ade_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_r1p_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PUNP2" name="purine nucleoside phosphorylase Deoxyadenosine " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4570</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_dad__2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ade_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2dr1p_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PUNP3" name="purine nucleoside phosphorylase Guanosine " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM4570 )</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gsn_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_r1p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gua_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PUNP4" name="purine nucleoside phosphorylase Deoxyguanosine " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM4570 )</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dgsn_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_gua_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2dr1p_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PUNP5" name="purine nucleoside phosphorylase Inosine " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM4570 )</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ins_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_r1p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_hxan_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PUNP6" name="purine nucleoside phosphorylase Deoxyinosine " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM4570 )</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_din_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_hxan_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2dr1p_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PUNP7" name="purine nucleoside phosphorylase Xanthosine " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: s0001</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_xtsn_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_xan_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_r1p_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PYAM5PO" name="pyridoxamine 5 phosphate oxidase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1448</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_o2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pyam5p_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h2o2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pydx5p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nh4_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PYDAMK" name="pyridoxamine kinase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2435</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pydam_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pyam5p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PYDXK" name="pyridoxal kinase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2435 or STM1450 )</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pydx_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pydx5p_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PYDXNK" name="pyridoxine kinase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2435</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pydxn_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pdx5p_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PYDXPP" name="Pyridoxal 5 phosphate phosphatase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pydx5p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pydx_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PYK" name="pyruvate kinase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM1888 or STM1378 )</p>
- <p>SUBSYSTEM: GlycolysisGluconeogenesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pep_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PYNP2r" name="pyrimidine nucleoside phosphorylase uracil " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3968</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_uri_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_r1p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ura_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PYRt2rpp" name="pyruvate reversible transport via proton symport periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pyr_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PYRtex" name="pyruvate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pyr_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pyr_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_QMO2" name="quinol monooxygenase Ubiquinol 8 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3180</p>
- <p>SUBSYSTEM: Oxidative Phosphorylation</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_o2_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_q8h2_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_q8_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_o2s_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_QMO3" name="quinol monooxygenase menaquinol 8 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3180</p>
- <p>SUBSYSTEM: Oxidative Phosphorylation</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_o2_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_mql8_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_mqn8_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_o2s_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_QULNS" name="quinolinate synthase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0756</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_dhap_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_iasp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h2o_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_quln_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_R5PP" name="ribose 5 phosphate phosphatase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0840 or STM0842 )</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_r5p_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_rib__D_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_R5PPpp" name="ribose 5 phosphate phosphatase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4249</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_r5p_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_rib__D_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_R5Ptex" name="Ribose 5 phosphate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_r5p_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_r5p_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_RBFK" name="riboflavin kinase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0045</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ribflv_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_fmn_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_RBFSa" name="riboflavin synthase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1426</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_4r5au_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_db4p_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h2o_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dmlz_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_RBFSb" name="riboflavin synthase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0417</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_dmlz_c" stoichiometry="2" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ribflv_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_4r5au_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_RBK" name="ribokinase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3885 or STM3793 )</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_rib__D_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_r5p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_RBK_L1" name="L ribulokinase L ribulose " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0103</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_rbl__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ru5p__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_RBP4E" name="L ribulose phosphate 4 epimerase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0101 or STM4388 or STM3677 )</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ru5p__L_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_xu5p__D_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_RHAT1" name="rhamnosyltransferase I LPS core biosynthesis " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3720</p>
- <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_kphphhlipa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dtdprmn_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dtdp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_icolipa_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_RHCCE" name="S ribosylhomocysteine cleavage enzyme" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2817</p>
- <p>SUBSYSTEM: Methionine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_rhcys_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_dhptd_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_hcys__L_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_RIBabcpp" name="D ribose transport via ABC system periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3882 and STM3884 and STM3883 and STM3881 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_rib__D_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_rib__D_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_RIBtex" name="ribose transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_rib__D_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_rib__D_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_RMI" name="L rhamnose isomerase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4046</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_rmn_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_rml_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_RMK" name="rhamnulokinase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4047</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_rml_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_rml1p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_RMNtex" name="L rhamnose transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_rmn_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_rmn_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_RMNtpp" name="L rhamnose transport via proton symport periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4050</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_rmn_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_rmn_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_RMPA" name="Rhamnulose 1 phosphate aldolase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4045</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_rml1p_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_lald__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dhap_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_RNDR1" name="ribonucleoside diphosphate reductase ADP " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2277 and STM2278 ) or ( STM2807 and STM2808 )</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_trdrd_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_trdox_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dadp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_RNDR1b" name="ribonucleoside diphosphate reductase ADP glutaredoxin " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( ( STM1433 and ( STM2807 and STM2808 ) ) or ( STM0872 and ( STM2807 and STM2808 ) ) or ( STM1165 and ( STM2807 and STM2808 ) ) or ( STM3702 and ( STM2807 and STM2808 ) ) )</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_grxrd_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_grxox_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dadp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_RNDR2" name="ribonucleoside diphosphate reductase GDP " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2277 and STM2278 ) or ( STM2807 and STM2808 )</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_trdrd_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gdp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_dgdp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_trdox_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_RNDR2b" name="ribonucleoside diphosphate reductase GDP glutaredoxin " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( ( STM3702 and ( STM2807 and STM2808 ) ) or ( STM1165 and ( STM2807 and STM2808 ) ) or ( STM1433 and ( STM2807 and STM2808 ) ) or ( STM0872 and ( STM2807 and STM2808 ) ) )</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_grxrd_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gdp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_dgdp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_grxox_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_RNDR3" name="ribonucleoside diphosphate reductase CDP " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2277 and STM2278 ) or ( STM2807 and STM2808 )</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_trdrd_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cdp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_trdox_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dcdp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_RNDR3b" name="ribonucleoside diphosphate reductase CDP glutaredoxin " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( ( STM1433 and ( STM2807 and STM2808 ) ) or ( STM1165 and ( STM2807 and STM2808 ) ) or ( STM0872 and ( STM2807 and STM2808 ) ) or ( STM3702 and ( STM2807 and STM2808 ) ) )</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_grxrd_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cdp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dcdp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_grxox_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_RNDR4" name="ribonucleoside diphosphate reductase UDP " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2277 and STM2278 ) or ( STM2807 and STM2808 )</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_trdrd_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_trdox_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dudp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_RNDR4b" name="ribonucleoside diphosphate reductase UDP glutaredoxin " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( ( STM1165 and ( STM2807 and STM2808 ) ) or ( STM3702 and ( STM2807 and STM2808 ) ) or ( STM1433 and ( STM2807 and STM2808 ) ) or ( STM0872 and ( STM2807 and STM2808 ) ) )</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_grxrd_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_dudp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_grxox_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_RNTR1c" name="ribonucleoside triphosphate reductase ATP flavodoxin " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( ( STM3045 and STM4084 and STM4452 and STM4451 ) or ( STM3045 and STM4452 ) or ( STM0694 and STM4452 ) or ( STM0694 and STM4084 and STM4452 and STM4451 ) )</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_fldrd_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_datp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fldox_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_RNTR2c" name="ribonucleoside triphosphate reductase GTP flavodoxin " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( ( STM0694 and STM4452 ) or ( STM3045 and STM4452 ) or ( STM3045 and STM4084 and STM4452 and STM4451 ) or ( STM0694 and STM4084 and STM4452 and STM4451 ) )</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_fldrd_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gtp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fldox_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dgtp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_RNTR3c" name="ribonucleoside triphosphate reductase CTP flavodoxin " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( ( STM3045 and STM4452 ) or ( STM0694 and STM4084 and STM4452 and STM4451 ) or ( STM0694 and STM4452 ) or ( STM3045 and STM4084 and STM4452 and STM4451 ) )</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_fldrd_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ctp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_fldox_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dctp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_RNTR4c" name="ribonucleoside triphosphate reductase UTP flavodoxin " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( ( STM0694 and STM4084 and STM4452 and STM4451 ) or ( STM3045 and STM4452 ) or ( STM0694 and STM4452 ) or ( STM3045 and STM4084 and STM4452 and STM4451 ) )</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_fldrd_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_utp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_fldox_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dutp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_RPE" name="ribulose 5 phosphate 3 epimerase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3483 or STM4080 or STM1617 )</p>
- <p>SUBSYSTEM: Pentose Phosphate Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ru5p__D_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_xu5p__D_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_RPI" name="ribose 5 phosphate isomerase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3063 or STM1933 )</p>
- <p>SUBSYSTEM: Pentose Phosphate Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_r5p_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ru5p__D_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_S7PI" name="sedoheptulose 7 phosphate isomerase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0310</p>
- <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_s7p_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_gmhep7p_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_SADH" name="Succinylarginine dihydrolase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1306</p>
- <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_sucarg_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_sucorn_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nh4_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_SADT2" name="Sulfate adenyltransferase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2934 and STM2935 )</p>
- <p>SUBSYSTEM: Cysteine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_so4_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gtp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_aps_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gdp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_SBTPD" name="sorbitol 6 phosphate dehydrogenase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2835</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_sbt6p_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_f6p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_SBTptspp" name="D sorbitol transport via PEPPyr PTS periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2431 and STM2432 and STM2832 and STM2834 and STM2833 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_sbt__D_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pep_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_sbt6p_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_SBTtex" name="D sorbitol transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_sbt__D_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_sbt__D_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_SDPDS" name="succinyl diaminopimelate desuccinylase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2483</p>
- <p>SUBSYSTEM: Threonine and Lysine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_sl26da_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_succ_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_26dap__LL_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_SDPTA" name="succinyldiaminopimelate transaminase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3468</p>
- <p>SUBSYSTEM: Threonine and Lysine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_sl26da_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_akg_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_sl2a6o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_SELCYSS" name="selenocysteine synthase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3683</p>
- <p>SUBSYSTEM: tRNA Charging</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_sertrna__sec___c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_selnp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_sectrna_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_SELNPS" name="Selenophosphate synthase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1297</p>
- <p>SUBSYSTEM: Unassigned</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_seln_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_selnp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_SERASr" name=" L seryl adenylate synthase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0588</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ser__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_seramp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_SERAT" name="serine O acetyltransferase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3699</p>
- <p>SUBSYSTEM: Cysteine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ser__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_accoa_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_acser_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_SERD_D" name="D serine deaminase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3802</p>
- <p>SUBSYSTEM: Glycine and Serine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ser__D_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nh4_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_SERTRS" name="Seryl tRNA synthetase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0963</p>
- <p>SUBSYSTEM: tRNA Charging</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ser__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_trnaser_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_sertrna_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_SERTRS2" name="Seryl tRNA synthetase selenocystein " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0963</p>
- <p>SUBSYSTEM: tRNA Charging</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ser__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_trnasecys_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_sertrna__sec___c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_SERt2rpp" name="L serine reversible transport via proton symport periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2970 or STM3243 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ser__L_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ser__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_SERt4pp" name="L serine via sodium symport periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3225</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_na1_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ser__L_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ser__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_na1_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_SERtex" name="L serine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ser__L_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ser__L_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_SFGTHi" name="S Formylglutathione hydralase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2194</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_Sfglutth_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_for_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gthrd_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_SGDS" name="Succinylglutamate desuccinylase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1307</p>
- <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_sucglu_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_succ_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_SGSAD" name="Succinylglutamic semialdehyde dehydrogenase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1305</p>
- <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_sucgsa_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_sucglu_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_SHCHCS2" name="2 succinyl 6 hydroxy 2 4 cyclohexadiene 1 carboxylate synthase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2309</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ssaltpp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ichor_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2shchc_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_thmpp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_SHCHD2" name="sirohydrochlorin dehydrogenase NAD " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3477</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dscl_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_scl_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_SHCHF" name="sirohydrochlorin ferrochetalase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3477</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_scl_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fe2_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_c" stoichiometry="3" constant="true"/>
- <speciesReference species="M_sheme_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_SHK3Dr" name="shikimate dehydrogenase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM1359 or STM3401 or STM3859 )</p>
- <p>SUBSYSTEM: Tyrosine Tryptophan and Phenylalanine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_3dhsk_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_skm_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_SHKK" name="shikimate kinase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3487 or STM0388 )</p>
- <p>SUBSYSTEM: Tyrosine Tryptophan and Phenylalanine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_skm_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_skm5p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_SKMtex" name="shikimate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_skm_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_skm_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_SO2tex" name="SO2 transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_so2_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_so2_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_SO2tpp" name="SO2 transport via diffusion periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: s0001</p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_so2_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_so2_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_SO3tex" name="sulfite transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM1473 or STM2267 or STM0320 or STM0999 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_so3_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_so3_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_SO4tex" name="sulfate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_so4_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_so4_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_SOTA" name="Succinylornithine transaminase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1303</p>
- <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_sucorn_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_akg_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_sucgsa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_SPMDAT1" name="Spermidine acetyltransferase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1502</p>
- <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_accoa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_spmd_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_N1aspmd_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_SPMDAT2" name="Spermidine acetyltransferase N8 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1502</p>
- <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_accoa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_spmd_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_n8aspmd_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_SPMDabcpp" name="spermidine transport via ABC system periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM1226 and STM1225 and STM1223 and STM1222 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_spmd_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_spmd_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_SPMDtex" name="spermidine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_spmd_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_spmd_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_SPMS" name="spermidine synthase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0166</p>
- <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ptrc_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ametam_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_spmd_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_5mta_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_SPODM" name="superoxide dismutase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM4055 or STM1431 )</p>
- <p>SUBSYSTEM: Unassigned</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_o2s_c" stoichiometry="2" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h2o2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_o2_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_SPODMpp" name="superoxide dismutase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM1440 or STM1044 )</p>
- <p>SUBSYSTEM: Unassigned</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_o2s_p" stoichiometry="2" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="2" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h2o2_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_o2_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_SSALx" name="succinate semialdehyde dehydrogenase NAD " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_sucsal_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_succ_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_SSALy" name="succinate semialdehyde dehydrogenase NADP " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2791</p>
- <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_sucsal_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_succ_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_SUCBZL" name="o succinylbenzoate CoA ligase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2305</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_sucbz_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_sbzcoa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_SUCBZS" name="O succinylbenzoate CoA synthase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2306</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_2shchc_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_sucbz_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_SUCCt2_2pp" name="succinate transport via proton symport 2 H periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3614</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="2" constant="true"/>
- <speciesReference species="M_succ_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_succ_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_SUCCt3pp" name="succinate transport out via proton antiport periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_succ_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_succ_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_SUCCtex" name="succinate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_succ_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_succ_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_SUCDi" name="succinate dehydrogenase irreversible " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0732 and STM0733 and STM0734 and STM0735 )</p>
- <p>SUBSYSTEM: Oxidative Phosphorylation</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_q8_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_succ_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_q8h2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fum_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_SUCOAS" name="succinyl CoA synthetase ADP forming " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0738 and STM0739 )</p>
- <p>SUBSYSTEM: Citric Acid Cycle</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_succ_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_succoa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_SUCRtex" name="sucrose transport transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_sucr_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_sucr_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_SULFACtex" name="sulfoaceate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_sulfac_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_sulfac_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_SULRi" name="sulfite reductase NADPH2 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2947 and STM2948 )</p>
- <p>SUBSYSTEM: Cysteine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nadph_c" stoichiometry="3" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="5" constant="true"/>
- <speciesReference species="M_so3_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nadp_c" stoichiometry="3" constant="true"/>
- <speciesReference species="M_h2s_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="3" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_SULabcpp" name="sulfate transport via ABC system periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( ( STM2441 and STM2443 and STM2442 and STM4063 ) or ( STM0781 and STM0782 and STM0783 ) or ( STM2441 and STM2444 and STM2443 and STM2442 ) )</p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_so4_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_so4_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_T2DECAI" name="trans 2 decenoyl ACP isomerase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1067</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_tdec2eACP_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cdec3eACP_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_TALA" name="transaldolase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2473 or STM0007 )</p>
- <p>SUBSYSTEM: Pentose Phosphate Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_g3p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_s7p_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_e4p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_f6p_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_TARTRtex" name="Tartrate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_tartr__L_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_tartr__L_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_TAURtex" name="taurine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_taur_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_taur_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_TCYNTtex" name="Thiocyanate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_tcynt_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_tcynt_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_TDECOAI" name="tetradecenoyl coa cis trans isomerization" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3983</p>
- <p>SUBSYSTEM: Membrane Lipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_tdecoa_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_td2coa_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_TDP" name="thiamin pyrophosphatase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1235</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_thmpp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_thmmp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_TDPADGAT" name="dTDP 4 amino 4 6 dideoxy D glucose acetyltransferase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3924</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_dtdp4addg_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_accoa_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dtdp4aaddg_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_TDPAGTA" name="dTDP 4 amino 4 6 dideoxy D glucose transaminase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3925</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dtdp4d6dg_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_akg_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dtdp4addg_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_TDPDRE" name="dTDP 4 dehydrorhamnose 3 5 epimerase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2094</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_dtdp4d6dg_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_dtdp4d6dm_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_TDPDRR" name="dTDP 4 dehydrorhamnose reductase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2096</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dtdp4d6dm_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dtdprmn_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_TDPGDH" name="dTDPglucose 4 6 dehydratase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2097 or STM3922 )</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_dtdpglu_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dtdp4d6dg_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_TDSK" name="Tetraacyldisaccharide 4 kinase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0985</p>
- <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_lipidAds_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_lipidA_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_TDSR1" name="thioldisulfide reductase DsbC " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3043 and STM4323 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_dsbcox_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dsbdrd_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_dsbdox_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dsbcrd_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_TDSR2" name="thioldisulfide reductase DsbG " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM4323 and STM0607 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_dsbdrd_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dsbgox_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_dsbdox_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dsbgrd_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_THD2pp" name="NAD P transhydrogenase periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM1480 and STM1479 )</p>
- <p>SUBSYSTEM: Oxidative Phosphorylation</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="2" constant="true"/>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_THDPS" name="tetrahydrodipicolinate succinylase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0213</p>
- <p>SUBSYSTEM: Threonine and Lysine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_succoa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_thdp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_sl2a6o_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_THIORDXi" name="hydrogen peroxide reductase thioredoxin " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( ( ( STM0609 and STM0608 ) or ( STM0609 and STM0402) ) and ( STM2649 or STM3915 ) )</p>
- <p>SUBSYSTEM: Unassigned</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_trdrd_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_trdox_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_THMDt2pp" name="thymidine transport in via proton symport periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3113 or STM2409 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_thymd_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_thymd_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_THMDt2rpp" name="thymidine transport in via proton symport reversible periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2421</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_thymd_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_thymd_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_THMDtex" name="thymidine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_thymd_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_thymd_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_THMabcpp" name="thiamine transport via ABC system periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0108 and STM0107 and STM0106 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_thm_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_thm_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_THMtex" name="Thiamine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_thm_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_thm_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_THRA2i" name="L allo Threonine Aldolase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2555 or STM0934 )</p>
- <p>SUBSYSTEM: Threonine and Lysine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_athr__L_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_gly_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_acald_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_THRAi" name="Threonine aldolase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2555 or STM0934 )</p>
- <p>SUBSYSTEM: Threonine and Lysine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_thr__L_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_gly_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_acald_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_THRD" name="L threonine dehydrogenase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3708</p>
- <p>SUBSYSTEM: Glycine and Serine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_thr__L_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_2aobut_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_THRD_L" name="L threonine deaminase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3244 or STM1826 or STM2971 or STM3905 )</p>
- <p>SUBSYSTEM: Valine Leucine and Isoleucine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_thr__L_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nh4_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2obut_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_THRPtex" name="phospho L threonine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_thrp_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_thrp_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_THRS" name="threonine synthase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0004</p>
- <p>SUBSYSTEM: Threonine and Lysine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_phom_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_thr__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_THRTRS" name="Threonyl tRNA synthetase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1333</p>
- <p>SUBSYSTEM: tRNA Charging</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_thr__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_trnathr_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_thrtrna_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_THRabcpp" name="L threonine transport via ABC system periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3560 and STM3561 and STM3563 and STM3567 and STM3562 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_thr__L_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_thr__L_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_THRt2pp" name="L threonine efflux transport via proton antiport periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0832 or STM3959 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_thr__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_thr__L_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_THRt2rpp" name="L threonine reversible transport via proton symport periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3243</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_thr__L_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_thr__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_THRt4pp" name="L threonine via sodium symport periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3225</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_na1_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_thr__L_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_thr__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_na1_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_THRtex" name="L threonine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_thr__L_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_thr__L_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_THYMt3pp" name="thymine transport out via proton antiport periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_thym_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_thym_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_THYMtex" name="thymine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM1473 or STM2267 or STM0320 or STM0999 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_thym_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_thym_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_TKT1" name="transketolase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3076 or STM2474 or STM2341 or STM2340 )</p>
- <p>SUBSYSTEM: Pentose Phosphate Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_xu5p__D_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_r5p_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_s7p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_g3p_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_TKT2" name="transketolase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3076 or STM2474 or STM2341 or STM2340 )</p>
- <p>SUBSYSTEM: Pentose Phosphate Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_xu5p__D_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_e4p_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_g3p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_f6p_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_TMAOR1pp" name="Trimethylamine N oxide reductase menaquinol 8 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3823 and STM3822 )</p>
- <p>SUBSYSTEM: Oxidative Phosphorylation</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_mql8_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_tmao_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_tma_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_mqn8_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_TMAOR2pp" name="Trimethylamine N oxide reductase demethylmenaquinol 8 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3823 and STM3822 )</p>
- <p>SUBSYSTEM: Oxidative Phosphorylation</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_2dmmql8_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_tmao_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_tma_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2dmmq8_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_TMAOtex" name="Trimethylamine N oxide transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_tmao_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_tmao_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_TMAtex" name="Trimethylamine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_tma_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_tma_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_TMDK1" name="thymidine kinase ATPthymidine " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1750</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_thymd_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_dtmp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_TMDPP" name="thymidine phosphorylase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4568</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_thymd_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_2dr1p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_thym_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_TMDS" name="thymidylate synthase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3001</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_dump_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_mlthf_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_dhf_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dtmp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_TMK" name="thiamine kinase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1208</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_thm_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_thmmp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_TMPK" name="thiamine phosphate kinase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0419</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_thmmp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_thmpp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_TMPPP" name="thiamine phosphate diphosphorylase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4163</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_4mpetz_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2mahmp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_thmmp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_TPI" name="triose phosphate isomerase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4081</p>
- <p>SUBSYSTEM: GlycolysisGluconeogenesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_dhap_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_g3p_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_TPRDCOAS" name="triphosphoribosyl dephospho CoA synthase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0619</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dpcoa_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ade_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2tpr3dpcoa_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_TRDR" name="thioredoxin reductase NADPH " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( ( STM3915 and ( STM0958 and STM0958 ) ) or STM2649 )</p>
- <p>SUBSYSTEM: Oxidative Phosphorylation</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_trdox_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_trdrd_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_TRE6PH" name="trehalose 6 phosphate hydrolase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4453</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_tre6p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glc__D_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_g6p_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_TRE6PP" name="trehalose phosphatase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1929</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_tre6p_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_tre_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_TRE6PS" name="alpha alpha trehalose phosphate synthase UDP forming " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1928</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_udpg_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_g6p_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_udp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_tre6p_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_TREH" name="alpha alpha trehalase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3603</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_tre_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glc__D_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_TREHpp" name="alpha alpha trehalase periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1796</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_tre_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glc__D_p" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_TREptspp" name="trehalose transport via PEPPyr PTS periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2433 and STM2431 and STM2432 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_tre_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pep_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_tre6p_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_TREtex" name="trehalose transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_tre_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_tre_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_TRPS1" name="tryptophan synthase indoleglycerol phosphate " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM1727 and STM1726 )</p>
- <p>SUBSYSTEM: Tyrosine Tryptophan and Phenylalanine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_3ig3p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ser__L_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_g3p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_trp__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_TRPS2" name="tryptophan synthase indole " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM1727 and STM1726 )</p>
- <p>SUBSYSTEM: Tyrosine Tryptophan and Phenylalanine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ser__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_indole_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_trp__L_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_TRPS3" name="tryptophan synthase indoleglycerol phosphate " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM1727 and STM1726 )</p>
- <p>SUBSYSTEM: Tyrosine Tryptophan and Phenylalanine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_3ig3p_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_g3p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_indole_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_TRPTRS" name="Tryptophanyl tRNA synthetase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3481</p>
- <p>SUBSYSTEM: tRNA Charging</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_trp__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_trnatrp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_trptrna_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_TRPt2rpp" name="L tryptophan reversible transport via proton symport periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0150 or STM3279 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_trp__L_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_trp__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_TRPtex" name="L tryptophan transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_trp__L_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_trp__L_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_TRSARr" name="tartronate semialdehyde reductase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0519 or STM3248 )</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_2h3oppan_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glyc__R_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_TSULabcpp" name="thiosulfate transport via ABC system periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( ( STM2441 and STM2444 and STM2443 and STM2442 ) or ( STM2441 and STM2443 and STM2442 and STM4063 ) )</p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_tsul_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_tsul_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_TSULtex" name="thiosulfate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_tsul_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_tsul_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_TTDCAtexi" name="Tetradecanoate transport via facilitated irreversible diffusion extracellular to periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2391</p>
- <p>SUBSYSTEM: Transport Outer Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ttdca_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ttdca_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_TTDCEAtexi" name="Tetradecenoate transport via facilitated irreversible diffusion extracellular to periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2391</p>
- <p>SUBSYSTEM: Transport Outer Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ttdcea_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ttdcea_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_TUNGSabcpp" name="tungstate transport via ABC system periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0781 and STM0782 and STM0783 )</p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_tungs_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_tungs_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_TUNGStex" name="tungstate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2267 or STM1473 or STM0320 or STM0999 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_tungs_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_tungs_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_TYMtex" name="tyramine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_tym_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_tym_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_TYRPpp" name="phospho L tyrosine phosphatase periplasmic " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4249</p>
- <p>SUBSYSTEM: Tyrosine Tryptophan and Phenylalanine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_tyrp_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_tyr__L_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_TYRPtex" name="phopho L tyrosine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_tyrp_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_tyrp_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_TYRTA" name="tyrosine transaminase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM4248 or STM0998 )</p>
- <p>SUBSYSTEM: Tyrosine Tryptophan and Phenylalanine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_akg_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_tyr__L_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_34hpp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_TYRTRS" name="tyrosyl tRNA synthetase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1449</p>
- <p>SUBSYSTEM: tRNA charging</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_trnatyr_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_tyr__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_tyrtrna_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_TYRt2rpp" name="L tyrosine reversible transport via proton symport periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM1937 or STM0150 or STM0568 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_tyr__L_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_tyr__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_TYRtex" name="L tyrosine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_tyr__L_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_tyr__L_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_U23GAAT" name="UDP 3 O 3 hydroxymyristoyl glucosamine acyltransferase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0226</p>
- <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_3hmrsACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_u3hga_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_u23ga_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_UAAGDS" name="UDP N acetylmuramoyl L alanyl D glutamyl meso 2 6 diaminopimelate synthetase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0123</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_uamag_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_26dap__M_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ugmd_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_UACGALPpp" name="UDP N acetyl D galactosamine pyrophosphohydrolase periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0494</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udpacgal_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ump_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_acgal1p_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_UACGAMPpp" name="UDP N acetyl D glucosamine pyrophosphohydrolase periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0494</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_uacgam_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ump_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="2" constant="true"/>
- <speciesReference species="M_acgam1p_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_UACGAMtex" name="UDP N acetyl D glucosamine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_uacgam_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_uacgam_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_UACMAMO" name="UDP N acetyl D mannosamine oxidoreductase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3921</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_uacmam_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nad_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nadh_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="3" constant="true"/>
- <speciesReference species="M_uacmamu_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_UAG2E" name="UDP N acetylglucosamine 2 epimerase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3920</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_uacgam_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_uacmam_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_UAGAAT" name="UDP N acetylglucosamine acyltransferase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM1196 and STM0228 )</p>
- <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_3hmrsACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_uacgam_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ACP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_u3aga_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_UAGCVT" name="UDP N acetylglucosamine 1 carboxyvinyltransferase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3307</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pep_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_uacgam_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_uaccg_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_UAGDP" name="UDP N acetylglucosamine diphosphorylase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3862</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_acgam1p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_utp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_uacgam_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_UAGPT3" name="UDP N acetylglucosamine N acetylmuramyl pentapeptide pyrophosphoryl undecaprenol N acetylglucosamine transferase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0128</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_uacgam_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_uagmda_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_udp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_uaagmda_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_UAMAGS" name="UDP N acetylmuramoyl L alanyl D glutamate synthetase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0126</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_glu__D_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_uama_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_uamag_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_UAMAS" name="UDP N acetylmuramoyl L alanine synthetase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0129</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_uamr_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ala__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_uama_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_UAPGR" name="UDP N acetylenolpyruvoylglucosamine reductase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4137</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_uaccg_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_uamr_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_UDCPDP" name="undecaprenyl diphosphatase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM1710 or STM0865 or STM3205 )</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_udcpdp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_udcpp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_UDCPDPS" name="Undecaprenyl diphosphate synthase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0221</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_frdp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ipdp_c" stoichiometry="8" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_udcpdp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="8" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_UDCPDPpp" name="undecaprenyl diphosphatase periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0865 or STM1710 or STM3205 )</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udcpdp_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udcpp_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_UDCPPtppi" name="undecaprenyl phosphate transport cytoplasm to periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_udcpp_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_udcpp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_UDPACGALtex" name="UDP N acetyl D galactosamine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_udpacgal_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_udpacgal_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_UDPG4E" name="UDPglucose 4 epimerase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0776</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_udpg_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_udpgal_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_UDPGALPpp" name="UDPgalactose pyrophosphohydrolase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0494</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udpgal_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ump_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gal1p_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_UDPGALtex" name="UDPgalactose transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_udpgal_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_udpgal_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_UDPGD" name="UDPglucose 6 dehydrogenase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2080</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_udpg_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nad_c" stoichiometry="2" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_udpglcur_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadh_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="3" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_UDPGDC" name="UDP glucuronate C 4 decarboxylase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2299</p>
- <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udpglcur_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udpLa4o_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_UDPGLCURtex" name="UDP D glucuronate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_udpglcur_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_udpglcur_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_UDPGPpp" name="UDPglucose pyrophosphohydrolase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0494</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udpg_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ump_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_g1p_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_UDPGtex" name="UDPglucose transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_udpg_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_udpg_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_UDPKAAT" name="UDP 4 ketopentoseUDP 4 amino 4 deoxy L arabinose aminotransferase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2297</p>
- <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udpLa4o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_udpLa4n_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_akg_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_UGLCURPpp" name="UDP D glucuronate pyrophosphohydrolase periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0494</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udpglcur_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glcur1p_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ump_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_UGLT" name="UDPglucose hexose 1 phosphate uridylyltransferase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0775</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_udpg_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gal1p_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_udpgal_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_g1p_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_UGLYCH" name="Ureidoglycolate hydrolase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0515</p>
- <p>SUBSYSTEM: Nitrogen Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_urdglyc_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glx_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nh4_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_UGMDDS" name="UDP N acetylmuramoyl L alanyl D glutamyl meso 2 6 diaminopimeloyl D alanyl D alanine synthetase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0124</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ugmd_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_alaala_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ugmda_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_UHGADA" name="UDP 3 O acetylglucosamine deacetylase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0134</p>
- <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_u3aga_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ac_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_u3hga_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ULA4NFT" name="UDP L Ara4N formyltransferase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2299</p>
- <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_10fthf_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udpLa4n_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_thf_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udpLa4fn_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ULA4Ntppi" name="transport cytoplasm to periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_uLa4n_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_uLa4n_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_UM3PL" name="UDP N acetylmuramateL alanyl gamma D glutamyl meso diaminopimelate ligase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4416</p>
- <p>SUBSYSTEM: Murein Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_uamr_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_LalaDgluMdap_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ugmd_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_UM4PCP" name="UDP N acetylmuramoyl L alanyl D gamma glutamyl meso 2 6 diaminopimelate D alanine L D carboxypeptidase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1800</p>
- <p>SUBSYSTEM: Murein Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_um4p_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ala__D_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ugmd_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_UM4PL" name="UDP N acetylmuramateL alanyl gamma D glutamyl meso diaminopimelate D alanine ligase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4416</p>
- <p>SUBSYSTEM: Murein Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_uamr_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_LalaDgluMdapDala_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_um4p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_UMPK" name="UMP kinase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0980 or STM0218 )</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ump_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_udp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_UMPtex" name="UMP transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0999 or STM1473 or STM2267 or STM0320 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ump_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ump_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_UNK3" name="2 keto 4 methylthiobutyrate transamination" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4248</p>
- <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_2kmb_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_akg_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_met__L_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_UPLA4FNF" name="undecaprenyl phosphate L Ara4FN formylase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_uLa4fn_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_for_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_uLa4n_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_UPLA4FNT" name="undecaprenyl phosphate L Ara4FN transferase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2298</p>
- <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_udpLa4fn_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udcpp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_uLa4fn_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_UPP3MT" name="uroporphyrinogen methyltransferase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3936 or STM3477 )</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_uppg3_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_amet_c" stoichiometry="2" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ahcys_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_dscl_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_UPP3S" name="uroporphyrinogen III synthase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3937</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_hmbil_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_uppg3_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_UPPRT" name="uracil phosphoribosyltransferase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2498</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ura_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_prpp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ump_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_URAt2pp" name="uracil transport in via proton symport periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2497</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ura_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ura_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_URAtex" name="uracil transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ura_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ura_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_URDGLYCD" name="ureidoglycolate dehydrogenase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0528</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_urdglyc_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_oxur_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_UREAtex" name="Urea transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_urea_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_urea_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_UREAtpp" name="Urea transport via facilitate diffusion periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4087</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_urea_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_urea_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_URIC" name="uricase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Unassigned</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_o2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_urate_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h2o2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_alltn_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_URIDK2r" name="uridylate kinase dUMP " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0218</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_dump_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_dudp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_URIH" name="Uridine hydrolase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0661 or STM0051 )</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_uri_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ura_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_rib__D_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_URIK2" name="uridine kinase GTPUridine " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2122</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_uri_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gtp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_gdp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ump_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_URIt2pp" name="uridine transport in via proton symport periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3113 or STM2409 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_uri_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_uri_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_URIt2rpp" name="uridine transport in via proton symport reversible periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2421</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_uri_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_uri_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_URItex" name="uridine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0413</p>
- <p>SUBSYSTEM: Transport Outer Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_uri_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_uri_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_USHD" name="UDP sugar hydrolase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0535</p>
- <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_u23ga_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ump_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_lipidX_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_VALTA" name="valine transaminase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3903</p>
- <p>SUBSYSTEM: Valine Leucine and Isoleucine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_val__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_akg_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_3mob_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_VALTRS" name="Valyl tRNA synthetase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4475</p>
- <p>SUBSYSTEM: tRNA charging</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_val__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_trnaval_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_valtrna_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_VALabcpp" name="L valine transport via ABC system periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3560 and STM3561 and STM3563 and STM3567 and STM3562 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_val__L_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_val__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_VALt2rpp" name="L valine reversible transport via proton symport periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0399</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_val__L_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_val__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_VALtex" name="L valine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_val__L_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_val__L_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_VPAMT" name="Valine pyruvate aminotransferase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3665</p>
- <p>SUBSYSTEM: Alanine and Aspartate Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_3mob_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ala__L_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_val__L_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_X5PL3E" name="L xylulose 5 phosphate 3 epimerase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4387</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_xu5p__L_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ru5p__L_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_XANt2pp" name="xanthine transport in via proton symport periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3747</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_xan_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_xan_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_XANtex" name="xanthine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_xan_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_xan_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_XANtpp" name="xanthine reversible transport periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_xan_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_xan_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_XMPtex" name="XMP transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_xmp_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_xmp_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_XPPT" name="xanthine phosphoribosyltransferase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0317</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_xan_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_prpp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_xmp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_XTSNH" name="Xanthosine hydrolase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0051</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_xtsn_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_xan_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_rib__D_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_XTSNt2rpp" name="Xanthosine transport via proton symport periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2421</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_xtsn_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_xtsn_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_XTSNtex" name="xanthosine transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_xtsn_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_xtsn_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_XYLI1" name="xylose isomerase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3661</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_xyl__D_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_xylu__D_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_XYLI2" name="xylose isomerase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3661</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_glc__D_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_fru_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_XYLK" name="xylulokinase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3660 or STM0103 )</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_xylu__D_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_xu5p__D_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_XYLK2" name="L xylulokinase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0103 or STM3674 )</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_xylu__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_xu5p__L_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_XYLUt2pp" name="L xylulose transport in via proton symport periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3671 and STM3672 and STM3673 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_xylu__L_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_xylu__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_XYLUtex" name="L xylulose transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_xylu__L_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_xylu__L_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_XYLtex" name="D xylose transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_xyl__D_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_xyl__D_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_XYLt2pp" name="D xylose transport in via proton symport periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0042</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_xyl__D_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_xyl__D_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ZN2abcpp" name="Zinc Zn2 ABC transporter periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3576</p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_zn2_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_zn2_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ZN2t3pp" name="zinc Zn2 transport out via proton antiport periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0758 or STM4061 )</p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_zn2_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_zn2_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ZN2tpp" name="zinc transport in via permease no H " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3190</p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_zn2_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_zn2_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ZNabcpp" name="zinc Zn2 transport via ABC system periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM1891 and STM1893 and STM1892.S )</p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_zn2_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_zn2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_Zn2tex" name="zinc Zn2 transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_zn2_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_zn2_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GCALDD" name="Glycolaldehyde dehydrogenase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Folate Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_gcald_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glyclt_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_THZPSN" name="thiazole phosphate synthesis" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2543 and STM4162 and ( STM4159 and STM4160 ) and STM0425 and STM4161 )</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_dxyl5p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_tyr__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cys__L_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_4mpetz_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ala__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_4hba_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_AEP_e" name="AEP exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_AEP_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_AEP_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_AEPtex" name="AEP transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_AEP_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_AEP_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_AEPabcpp" name="AEP transport via ABC system periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0426 and STM0427 and STM0429 and STM0428 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_AEP_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_AEP_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_AEPPYRTA" name="2 aminoethylphosphonate pyruvate transaminase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0431</p>
- <p>SUBSYSTEM: aminophosphonate metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_AEP_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ala__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_Pald_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PALDH" name="phosphonoacetaldehyde hydrolase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0432</p>
- <p>SUBSYSTEM: aminophosphonate metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_Pald_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_acald_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_4hoxpac_e" name="4 hydroxyphenylacetate exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_4hoxpac_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_4hoxpac_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_4hoxpactex" name="4 hydroxyphenylacetate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_4hoxpac_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_4hoxpac_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_4HOXPACt2pp" name="4 hydroxyphenylacetate transport in via proton symport periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1107</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_4hoxpac_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_4hoxpac_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FLAVNADR" name="Flavin NAD P H reductase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1098</p>
- <p>SUBSYSTEM: 4 hydroxyphenylacetate catabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fadh2_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_4HOXPACMON" name="4 hydroxyphenylacetate 3 monooxygenase nadh" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: (STM1098 or STM1099)</p>
- <p>SUBSYSTEM: 4 hydroxyphenylacetate catabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_4hoxpac_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_o2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_34dhpacet_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_4HOXPACMOF" name="4 hydroxyphenylacetate 3 monooxygenase FADH2" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1099</p>
- <p>SUBSYSTEM: 4 hydroxyphenylacetate catabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_fadh2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_o2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_4hoxpac_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_fad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_34dhpacet_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_34DHPACDO" name="3 4 dihydroxyphenylacetate 2 3 dioxygenase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1103</p>
- <p>SUBSYSTEM: 4 hydroxyphenylacetate catabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_34dhpacet_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_o2_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_2h5cmmusa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_4C2HM6SADH" name="4 carboxy 2 hydroxymuconate 6 semialdehyde dehydrogenase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1102</p>
- <p>SUBSYSTEM: 4 hydroxyphenylacetate catabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2h5cmmusa_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_5cm2hmu_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_5CM2HMUDI" name="5 carboxymethyl 2 hydroxymuconate delta isomerase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1104</p>
- <p>SUBSYSTEM: 4 hydroxyphenylacetate catabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_5cm2hmu_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_5c2o3ed_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_5C2O3EDDC" name="5 carboxy 2 oxohept 3 enedioate decarboxylation" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1101</p>
- <p>SUBSYSTEM: 4 hydroxyphenylacetate catabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_5c2o3ed_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_2hh24dd_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_2HH24DDH" name="2hh24dd hydratase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1105</p>
- <p>SUBSYSTEM: 4 hydroxyphenylacetate catabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2hh24dd_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_4h2kpi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_4H2KPILY" name="4h2kpi Lyase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1106</p>
- <p>SUBSYSTEM: 4 hydroxyphenylacetate catabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_4h2kpi_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_sucsal_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_12PPDS2tpp" name=" S Propane 1 2 diol facilitated transport 2 periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2037</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_12ppd__S_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_12ppd__S_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_12PPDRDH" name=" R Propane 1 2 diol dehydratase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2040 and STM2041 and STM2042 and STM2043 and STM2044)</p>
- <p>SUBSYSTEM: 1 2 Propanediol Catabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_12ppd__R_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppal_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_12PPDSDH" name=" S Propane 1 2 diol dehydratase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2040 and STM2041 and STM2042 and STM2043 and STM2044)</p>
- <p>SUBSYSTEM: 1 2 Propanediol Catabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_12ppd__S_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ppal_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ALCDPPAL" name="alcohol dehydrogenase Propanal " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2052</p>
- <p>SUBSYSTEM: 1 2 Propanediol Catabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ppal_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppoh_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_COAPPALDH" name="CoA dependent Propanal dehydrogenase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2051</p>
- <p>SUBSYSTEM: 1 2 Propanediol Catabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppal_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppcoa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DSCLCOCH" name="Sirohydrochlorin cobaltochelatase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2025 or STM3477 )</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_dscl_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cobalt2_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_codscl2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_Cobalt2abcppI" name="cobalt II transport via ABC system periplasm I" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2023 and STM2022 and STM2021 and STM2020 )</p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cobalt2_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cobalt2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_Cobalt2abcppII" name="cobalt II transport via ABC system periplasm II" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2023 and STM2022 )</p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_cobalt2_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cobalt2_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CODSCL2MT" name="Cobalt precorrin 2 methyltransferase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2024</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_amet_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_codscl2_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_codscl3_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ahcys_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CODSCL3MT" name="Cobalt precorrin 3 C17 methyltransferase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2027</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_codscl3_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_amet_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_codscl4_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ahcys_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CODSCL4MT" name="Cobalt precorrin 4 methyltransferase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2029</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_codscl4_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_amet_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_codscl5a_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ahcys_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CODSCL5DA" name="Cobalt precorrin 5a deacetylation" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2028</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_codscl5a_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_codscl5b_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_acald_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CODSCL5BMT" name="Cobalt precorrin 5b methyltransferase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2032</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_codscl5b_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_amet_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ahcys_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_codscl6a_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CODSCL6ARED" name="Cobalt precorrin 6a reductase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2026</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_codscl6a_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_codscl6b_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CODSCL6BMT" name="Cobalt precorrin 6b methyltransferase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2031</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_codscl6b_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_amet_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ahcys_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_codscl7_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CODSCL7MTDC" name="Cobalt precorrin 7 methyltransferase decarboxylase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2030</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_amet_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_codscl7_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ahcys_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_codscl8x_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CODSCL8XI" name="Cobalt precorrin 8x isomerase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2033</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_codscl8x_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cobn_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_COBNAD" name="Cobyrinate amidation" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2035</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_cobn_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_gln__L_c" stoichiometry="2" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_glu__L_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_cob2nda_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_COB2NDARED" name="cob II yrinate a c diamide reductase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: s0001</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_cob2nda_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_fmnh2_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_fmn_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cob1nda_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_COB1NDAAT1" name="cob I yrinate a c diamide adenosyltransferase 1" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2050 or STM1718 )</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cob1nda_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adcob1nda_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_COB1NDAAT2" name="cob I yrinate a c diamide adenosyltransferase 2" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2467</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cob1nda_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adcob1nda_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ADCOBNSYN" name="adenosylcobyric acid synthase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2019</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_adcob1nda_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gln__L_c" stoichiometry="4" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="4" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="4" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="4" constant="true"/>
- <speciesReference species="M_adcobn_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="4" constant="true"/>
- <speciesReference species="M_glu__L_c" stoichiometry="4" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="4" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LTHRK" name="L threonine kinase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2058</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_thr__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_thrp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_THRPDC" name="L threonine phosphate decarboxylase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0644</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_thrp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_appp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ADOCBIPS" name="Adenosyl cobinamide phosphate synthase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2034</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_appp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adcobn_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adocbip_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ADOCBLPS" name="Adenosylcobalamin phosphate synthase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2017</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_5prdmbz_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_agdpcbi_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_gmp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adocblp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ADOCBLPP" name="Adenosylcobalamin phosphate phosphatase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0643</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_adocblp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adocbl_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ADOCBIK" name="Adenosyl cobinamide kinase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2018 or STM1208 )</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adocbi_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adocbip_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CBLAT" name="cob I alamin adenosyltransferase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM1718 or STM2050 or STM2467 )</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cbl1_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adocbl_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_APPK" name="1 amino 2 propanol kinase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_app_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_appp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_remnant1_e" name="residual atoms of reaction DMBZIDSYN exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_remnant1_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_remnant1_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_REMNANT1tex" name="residual atoms of reaction DMBZIDSYN transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_remnant1_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_remnant1_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_colipa20Oag_e" name="O antigen x20 core oligosaccharide lipid A exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_colipa20Oag_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_colipa20Oag_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_colipa20Oagtex" name="O antigen x20 core oligosaccharide lipid A transport periplasm to extracellular " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_colipa20Oag_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_colipa20Oag_e" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_udcdp20OagLpp" name="O antigen x20 ligase periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3713</p>
- <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_colipa_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udcdp20Oag_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_colipa20Oag_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udcpdp_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_udcdpgalrmnmanabetpp" name="Undecaprenyl diphosphate galactose rhamnose mannose abequose flippase cytoplasm to periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2088</p>
- <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_udcdpgalrmnmanabe_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_udcdpgalrmnmanabe_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_OGLT" name="galactosyltransferase LPS O antigen biosynthesis " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2082</p>
- <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_udpgal_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udcpp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ump_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udcdpgal_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ORLT" name="rhamnosyl transferase LPS O antigen biosynthesis " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2085</p>
- <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_dtdprmn_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udcdpgal_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_udcdpgalrmn_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dtdp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_OMLT" name="mannosyl transferase LPS O antigen biosynthesis " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2086</p>
- <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_gdpmann_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udcdpgalrmn_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_gdp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udcdpgalrmnman_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_OALT" name="abequosyl transferase LPS O antigen biosynthesis " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2087</p>
- <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_cdpabeq_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udcdpgalrmnman_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_udcdpgalrmnmanabe_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cdp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MAN1PT2" name="mannose 1 phosphate guanylyltransferase GDP " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2105.S or STM2084 )</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_man1p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gdp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_gdpmann_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PMANM" name="phosphomannomutase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2104 or STM2083 )</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_man1p_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_man6p_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_OAP1pp" name="O antigen polymerase 1 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1332</p>
- <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_udcdpgalrmnmanabe_p" stoichiometry="2" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_udcdp2Oag_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udcpdp_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_OAP2pp" name="O antigen polymerase 2 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1332</p>
- <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_udcdpgalrmnmanabe_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udcdp2Oag_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_udcdp3Oag_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udcpdp_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_OAP3pp" name="O antigen polymerase 3 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1332</p>
- <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_udcdp3Oag_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udcdpgalrmnmanabe_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udcpdp_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udcdp4Oag_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_OAP4pp" name="O antigen polymerase 4 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1332</p>
- <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_udcdpgalrmnmanabe_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udcdp4Oag_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_udcdp5Oag_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udcpdp_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_OAP5pp" name="O antigen polymerase 5 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1332</p>
- <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_udcdp5Oag_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udcdpgalrmnmanabe_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_udcdp6Oag_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udcpdp_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_OAP6pp" name="O antigen polymerase 6 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1332</p>
- <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_udcdp6Oag_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udcdpgalrmnmanabe_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_udcdp7Oag_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udcpdp_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_OAP7pp" name="O antigen polymerase 7 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1332</p>
- <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_udcdpgalrmnmanabe_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udcdp7Oag_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udcdp8Oag_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udcpdp_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_OAP8pp" name="O antigen polymerase 8 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1332</p>
- <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_udcdp8Oag_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udcdpgalrmnmanabe_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_udcdp9Oag_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udcpdp_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_OAP9pp" name="O antigen polymerase 9 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1332</p>
- <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_udcdpgalrmnmanabe_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udcdp9Oag_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_udcdp10Oag_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udcpdp_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_OAP10pp" name="O antigen polymerase 10 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1332</p>
- <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_udcdpgalrmnmanabe_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udcdp10Oag_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udcdp11Oag_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udcpdp_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_OAP11pp" name="O antigen polymerase 11 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1332</p>
- <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_udcdpgalrmnmanabe_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udcdp11Oag_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udcdp12Oag_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udcpdp_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_OAP12pp" name="O antigen polymerase 12 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1332</p>
- <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_udcdpgalrmnmanabe_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udcdp12Oag_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udcpdp_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udcdp13Oag_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_OAP13pp" name="O antigen polymerase 13 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1332</p>
- <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_udcdpgalrmnmanabe_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udcdp13Oag_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_udcdp14Oag_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udcpdp_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_OAP14pp" name="O antigen polymerase 14 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1332</p>
- <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_udcdp14Oag_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udcdpgalrmnmanabe_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_udcdp15Oag_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udcpdp_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_OAP15pp" name="O antigen polymerase 15 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1332</p>
- <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_udcdpgalrmnmanabe_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udcdp15Oag_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_udcdp16Oag_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udcpdp_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_OAP16pp" name="O antigen polymerase 16 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1332</p>
- <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_udcdpgalrmnmanabe_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udcdp16Oag_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udcdp17Oag_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udcpdp_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_OAP17pp" name="O antigen polymerase 17 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1332</p>
- <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_udcdp17Oag_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udcdpgalrmnmanabe_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_udcdp18Oag_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udcpdp_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_OAP18pp" name="O antigen polymerase 18 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1332</p>
- <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_udcdp18Oag_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udcdpgalrmnmanabe_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_udcdp19Oag_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udcpdp_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_OAP19pp" name="O antigen polymerase 19 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1332</p>
- <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_udcdp19Oag_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udcdpgalrmnmanabe_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udcdp20Oag_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udcpdp_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_G1PCT" name="glucose 1 phosphate cytidylyltransferase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2092</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_g1p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ctp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cdpglc_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CDPGLC46DH" name="CDP glucose 4 6 dehydratase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2091</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_cdpglc_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cdp4dh6doglc_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CDP4D6DGLCRx" name="CDP 4 dehydro 6 deoxyglucose reductase " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2090 and STM2093 )</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_cdp4dh6doglc_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cdp4dh36ddglc_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CDPABEQS" name="CDP abequose synthase " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2089</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cdp4dh36ddglc_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cdpabeq_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_SALCHS4FEexs" name="Salmochelin S4 Fe III binding spontaneous " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: s0001</p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_fe3_e" stoichiometry="1" constant="true"/>
- <speciesReference species="M_salchs4_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_salchs4fe_e" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_SALCHS4_e" name="Salmochelin S4 exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_salchs4_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_salchs4_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_SALCHS4FE_e" name="Salmochelin S4 Fe III exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_salchs4fe_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_salchs4fe_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_SALCHS4FEabcpp" name="Salmochelin S4 Fe III transport via ABC system periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0594 and STM0590 and STM0592 and STM0591 )</p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_salchs4fe_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_salchs4fe_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_SALCHS4tex" name="Salmochelin S4 transport secretion periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_salchs4_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_salchs4_e" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_SALCHS4abcpp" name="Salmochelin S4 transport via ABC system periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2774</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_salchs4_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_salchs4_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FEENTER2tpp" name="enterochelin transport2 via ABC system periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2774</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_enter_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_enter_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_SALCHSX_e" name="Salmochelin SX exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_salchsx_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_salchsx_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_SALCHSXtex" name="Salmochelin SX via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_salchsx_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_salchsx_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_SALCHSXtpp" name="Salmochelin SX facilitated transport periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_salchsx_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_salchsx_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CSNt2pp" name="cytosine transport in via proton symport periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3333</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_csn_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_csn_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CSND" name="Cytosine deaminase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3334</p>
- <p>SUBSYSTEM: Nucleotide Salvage Pathway</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_csn_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ura_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nh4_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ALCD19" name="alcohol dehydrogenase glycerol " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1627</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_glyald_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glyc_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ALCD2x" name="alcohol dehydrogenase ethanol " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM1627 or STM1567 or STM1749 or STM2461 )</p>
- <p>SUBSYSTEM: Pyruvate Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_etoh_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_acald_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FALDH2" name="formaldehyde dehydrogenase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1627</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_hmgth_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_Sfglutth_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DPR" name="2 dehydropantoate 2 reductase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3909 or STM0434 or STM2573 )</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2dhp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pant__R_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LIPAHT2ex" name="core oligosaccharide lipid Ahexadecanoate transferase n C160 extracellular membrane " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0628</p>
- <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_e" stoichiometry="1" constant="true"/>
- <speciesReference species="M_hdca_e" stoichiometry="1" constant="true"/>
- <speciesReference species="M_colipa_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_hacolipa_e" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_e" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LIPAHTex" name="Lipid Ahexadecanoate transferase n C160 extracellular membrane " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0628</p>
- <p>SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_lipa_e" stoichiometry="1" constant="true"/>
- <speciesReference species="M_hdca_e" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_halipa_e" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_e" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CYTBD2pp" name="cytochrome oxidase bd menaquinol 8 2 protons periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM1792 and STM1793 )</p>
- <p>SUBSYSTEM: Oxidative Phosphorylation</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_o2_c" stoichiometry="0.5" constant="true"/>
- <speciesReference species="M_mql8_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_mqn8_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CYTBDpp" name="cytochrome oxidase bd ubiquinol 8 2 protons periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( ( STM1792 and STM1793 ) or ( STM0740 and STM0741 ) )</p>
- <p>SUBSYSTEM: Oxidative Phosphorylation</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_q8h2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_o2_c" stoichiometry="0.5" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_q8_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ACANTHAT" name="acetyl CoAanthranilate acetyltransferase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1582</p>
- <p>SUBSYSTEM: Tyrosine Tryptophan and Phenylalanine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_accoa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_anth_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_acanth_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GLTPD" name="Galactitol 1 phosphate dehydrogenase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3261</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_galt1p_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_tag6p__D_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_TGBPA" name="Tagatose bisphosphate aldolase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3257 and STM3253 )</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_tagdp__D_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_dhap_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_g3p_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GUI1" name="glucuronate isomerase D glucuronate " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3137</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_glcur_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_fruur_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GUI2" name="glucuronate isomerase D galacturonate " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3137</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_galur_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_tagur_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MNNH" name="D mannonate hydrolyase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3135</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_mana_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_2ddglcn_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MANAO" name="Mannonate oxidoreductase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3136</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_mana_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fruur_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_OAADCS" name="oxaloacetate decarboxylase sodium pump" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( ( STM0054 and STM0055 and STM0056 ) or ( STM3351 and STM3352 and STM3353 ))</p>
- <p>SUBSYSTEM: Pyruvate Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_na1_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_oaa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_na1_p" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CITt4pp" name="Citrate transport via sodium symport periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0057</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_cit_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_na1_p" stoichiometry="2" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_na1_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_cit_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DDGLCNt2rpp" name="2 dehydro 3 deoxy D gluconate transport via proton symport reversible periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0161</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2ddglcn_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_2ddglcn_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CITt2pp" name="Citrate proton symport periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0689</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cit_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cit_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CITtupp" name="Citrate transport periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2786 and STM2787 and STM2788 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_cit_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cit_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ICITtupp" name="Isocitrate transport periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2786 and STM2787 and STM2788 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_icit_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_icit_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ACONCtupp" name="Cisaconitate transport periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2786 and STM2787 and STM2788 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_acon__C_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_acon__C_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NI2uabcpp" name="nickel transport via ABC system uptake periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM4456 or ( STM1255 and STM1256 and STM1257 and STM1258 and STM1259 ) )</p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ni2_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ni2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GALTptspp" name="Galactitol transport via PEPPyr PTS periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3258 and STM3259 and STM3260 and STM2431 and STM2432 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_galt_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pep_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_galt1p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_tag__D_e" name="D Tagatose exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_tag__D_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_tag__D_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_TAGtex" name="D Tagatose transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_tag__D_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_tag__D_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_TAGptspp" name="D Tagatose transport via PEPPyr PTS periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3255 and STM3256 and STM2432 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pep_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_tag__D_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_tag1p__D_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_TAG1PK" name="D Tagatose 1 phosphate kinase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM1326 or STM3254)</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_tag1p__D_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_tagdp__D_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FE2abcpp" name="iron II transport via ABC system periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3506 or ( STM2861 and STM2862 and STM2863 and STM2864 ))</p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_fe2_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_fe2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MN2abcpp" name="Manganese Mn2 transport via ABC system periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2861 and STM2862 and STM2863 and STM2864 )</p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_mn2_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_mn2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_TETDHpp1" name="Tetrathionate Dehydrogenase menaquinone 8 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM1383 and STM1385 and STM1384 )</p>
- <p>SUBSYSTEM: Oxidative Phosphorylation</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_tet_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_mql8_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_tsul_p" stoichiometry="2" constant="true"/>
- <speciesReference species="M_mqn8_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_TSULDHpp1" name="Thiosulfate Dehydrogenase menaquinone 8 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2065 and STM2064 and STM2063 )</p>
- <p>SUBSYSTEM: Oxidative Phosphorylation</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_mql8_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="2" constant="true"/>
- <speciesReference species="M_tsul_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h2s_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_mqn8_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_so3_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_TETDHpp2" name="Tetrathionate Dehydrogenase Demethylmenaquinol 8 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM1383 and STM1385 and STM1384 )</p>
- <p>SUBSYSTEM: Oxidative Phosphorylation</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_2dmmql8_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_tet_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_tsul_p" stoichiometry="2" constant="true"/>
- <speciesReference species="M_2dmmq8_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_TSULDHpp2" name="Thiosulfate Dehydrogenase Demethylmenaquinol 8 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2065 and STM2064 and STM2063 )</p>
- <p>SUBSYSTEM: Oxidative Phosphorylation</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_2dmmql8_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_tsul_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="2" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_so3_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2dmmq8_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_h2s_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_TETDHpp3" name="Tetrathionate Dehydrogenase ubiquinone 8 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM1383 and STM1385 and STM1384 )</p>
- <p>SUBSYSTEM: Oxidative Phosphorylation</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_q8h2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_tet_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_q8_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_tsul_p" stoichiometry="2" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_TSULDHpp3" name="Thiosulfate Dehydrogenase ubiquinone 8 periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2065 and STM2064 and STM2063 )</p>
- <p>SUBSYSTEM: Oxidative Phosphorylation</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="2" constant="true"/>
- <speciesReference species="M_q8h2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_tsul_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_q8_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2s_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_so3_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_SO3R" name="Sulfite reductase " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2548 and STM2549 and STM2550 )</p>
- <p>SUBSYSTEM: Glycerophospholipid Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nadh_c" stoichiometry="3" constant="true"/>
- <speciesReference species="M_so3_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="5" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h2o_c" stoichiometry="3" constant="true"/>
- <speciesReference species="M_h2s_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nad_c" stoichiometry="3" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MG2uabcpp" name="Magnesium Mg2 ABC transporter ubtake periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM4456 or STM3763 )</p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_mg2_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_mg2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_UPPDC1" name="uroporphyrinogen decarboxylase uroporphyrinogen III " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4167</p>
- <p>SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_c" stoichiometry="4" constant="true"/>
- <speciesReference species="M_uppg3_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cpppg3_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_co2_c" stoichiometry="4" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_AIRSK" name="Aminoimidazole riboside kinase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4066</p>
- <p>SUBSYSTEM: Purine and Pyrimidine Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_airs_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_air_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_airs_e" name="Aminoimidazole riboside exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_airs_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_airs_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_AIRStex" name="Aminoimidazole riboside transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_airs_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_airs_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_AIRStpp" name="Aminoimidazole riboside facilitated transport periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_airs_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_airs_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_REMNANT1tpp" name="residual atoms of reaction DMBZIDSYN facilitated transport periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_remnant1_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_remnant1_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ARGDA" name="Arginine deiminase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4467</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_arg__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_citr__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nh4_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_OCBT" name="ornithine carbamoyltransferase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM4469 or STM4465 )</p>
- <p>SUBSYSTEM: Arginine and Proline Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_orn_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cbp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_citr__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CBMKr" name="Carbamate kinase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0532 or STM4466 )</p>
- <p>SUBSYSTEM: Unassigned</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nh4_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_cbp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_3PGt6pp" name="3 Phospho D glycerate phosphate antiporter periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2399</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_3pg_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_3pg_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_2PGt6pp" name="D Glycerate 2 phosphate phosphate antiporter periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2399</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_2pg_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_2pg_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PEPt6pp" name="Phosphoenolpyruvate phosphate antiporter periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2399</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pep_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pi_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pep_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_pep_e" name="Phosphoenolpyruvate exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pep_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pep_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PEPtex" name="Phosphoenolpyruvate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pep_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pep_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_2pg_e" name="D Glycerate 2 phosphate exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_2pg_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_2pg_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_2PGtex" name="D Glycerate 2 phosphate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_2pg_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_2pg_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_3pg_e" name="3 Phospho D glycerate exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_3pg_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_3pg_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_3PGtex" name="3 Phospho D glycerate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_3pg_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_3pg_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_SERD_L" name="L serine deaminase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3240 or STM1826 or STM2971 or STM2196 )</p>
- <p>SUBSYSTEM: Glycine and Serine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ser__L_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nh4_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_TARTD" name="L tartrate dehydratase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3355 and STM3354 )</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_tartr__L_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_oaa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_TARTRtpp" name="Tartrate facilitated transport periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_tartr__L_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_tartr__L_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NI2tpp" name="nickel 2 transport in via permease no H " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3952 or STM2783 )</p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ni2_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ni2_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CAT" name="catalase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM1318 or STM4106 or STM1731 )</p>
- <p>SUBSYSTEM: Unassigned</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o2_c" stoichiometry="2" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_o2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CHORM" name="chorismate mutase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM2667 or STM2669 or STM1269 )</p>
- <p>SUBSYSTEM: Tyrosine Tryptophan and Phenylalanine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_chor_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pphn_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DAPAL" name="2 3 diaminopropionate amonnia lyase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1002</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_23dappa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nh4_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_UDPGALM" name="UDPgalactopyranose mutase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0719</p>
- <p>SUBSYSTEM: Cell Envelope Biosynthesis</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_udpgal_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_udpgalfur_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_HYD1pp" name="hydrogenase ubiquinone 8 2 protons periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( ( STM1786 and STM1787 and STM1788 ) or ( STM3147 and STM3150 ) or ( STM2847 and STM2848 and STM2849 and STM2850 and STM2851 and STM2852 ) or ( STM1538 and STM1539 ) )</p>
- <p>SUBSYSTEM: Oxidative Phosphorylation</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_q8_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_h2_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_p" stoichiometry="2" constant="true"/>
- <speciesReference species="M_q8h2_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_HYD2pp" name="Hydrogenase menaquinone8 2 protons periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( ( STM1786 and STM1787 and STM1788 ) or ( STM3147 and STM3150 ) or ( STM1538 and STM1539 ) )</p>
- <p>SUBSYSTEM: Oxidative Phosphorylation</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_mqn8_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_h2_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_p" stoichiometry="2" constant="true"/>
- <speciesReference species="M_mql8_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_HYD3pp" name="Hydrogenase Demethylmenaquinone 8 2 protons periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( ( STM1786 and STM1787 and STM1788 ) or ( STM3147 and STM3150 ) or ( STM1538 and STM1539 ) )</p>
- <p>SUBSYSTEM: Oxidative Phosphorylation</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_2dmmq8_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_h2_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_2dmmql8_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_tet_e" name="Tetrathionate exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_tet_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_tet_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_TETtex" name="Tetrathionate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_tet_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_tet_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_foam_e" name="Formamide exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_foam_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_foam_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FOAMtex" name="Formamide transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_foam_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_foam_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_tartr__D_e" name="D tartrate exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_tartr__D_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_tartr__D_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_TARTRDtex" name="D Tartrate transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_tartr__D_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_tartr__D_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_TARTRDtpp" name="D Tartrate facilitated transport periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3356</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_tartr__D_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_tartr__D_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GALCTD" name="galactarate dehydratase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM3250 or STM3697 )</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_galct__D_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_5dh4dglc_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_SHSL1" name="O succinylhomoserine lyase L cysteine " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM4100 or STM3624A )</p>
- <p>SUBSYSTEM: Methionine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_cys__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_suchms_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_succ_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cyst__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ASPt2_3pp" name="L asparate transport via proton symport 3 H periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM4325 or STM4301 or STM3599 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="3" constant="true"/>
- <speciesReference species="M_asp__L_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_asp__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="3" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_SUCFUMtpp" name="succinatefumarate antiporter periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM4301 or STM0627 or STM4325 or STM3599 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_succ_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fum_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_succ_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fum_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_SUCCt2_3pp" name="Succintate transport via proton symport 3 H periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM4301 or STM4325 or STM3599 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="3" constant="true"/>
- <speciesReference species="M_succ_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_succ_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="3" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FUMt2_3pp" name="Fumarate transport via proton symport 3 H periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM4325 or STM4301 or STM0627 or STM3599 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_fum_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="3" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_c" stoichiometry="3" constant="true"/>
- <speciesReference species="M_fum_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MALt2_3pp" name="Malate transport via proton symport 3 H periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM4301 or STM4325 or STM3599 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_mal__L_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="3" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_c" stoichiometry="3" constant="true"/>
- <speciesReference species="M_mal__L_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ALAALAD" name="D alanine D alanine dipeptidase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1599</p>
- <p>SUBSYSTEM: Murein Recycling</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_alaala_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ala__D_p" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DMSOR1" name="Dimethyl sulfoxide reductase Menaquinol 8 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( ( STM1499 and STM1498 and STM1497 and STM1496 ) or ( STM0964 and STM0965 and STM0966 ) or ( STM4305.S and STM4306 and STM4307 ) or ( STM2528 and STM2530 and STM2529 ) )</p>
- <p>SUBSYSTEM: Oxidative Phosphorylation</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_dmso_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_mql8_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_mqn8_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dms_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DMSOR2" name="Dimethyl sulfoxide reductase Demethylmenaquinol 8 " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( ( STM0964 and STM0965 and STM0966 ) or ( STM4305.S and STM4306 and STM4307 ) or ( STM2528 and STM2530 and STM2529 ) )</p>
- <p>SUBSYSTEM: Oxidative Phosphorylation</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_2dmmql8_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dmso_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2dmmq8_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dms_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NAt3pp" name="sodium transport out via proton antiport cytoplasm to periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0866 or STM1771 or STM1556 )</p>
- <p>SUBSYSTEM: Inorganic Ion Transport and Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_na1_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_na1_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_4IZ5PPH" name="4 Imidazolone 5 propanoate propionase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0787</p>
- <p>SUBSYSTEM: Histidine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_4iz5pp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nflgln_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NFLGLNH" name="N Formimino L glutamate formiminohydrolase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0788</p>
- <p>SUBSYSTEM: Histidine Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nflgln_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_foam_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glu__L_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_4abz_e" name="4 Aminobenzoate exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_4abz_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_4abz_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ABZtex" name="4 aminobenzoate extracellular to cytosol " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_4abz_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_4abz_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_feroxB_e" name="Ferrioxamine B exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_feroxB_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_feroxB_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_feroxBfe_e" name="Ferrioxamine B fe exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_feroxBfe_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_feroxBfe_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_feroxE_e" name="Ferrioxamine E exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_feroxE_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_feroxE_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_feroxEfe_e" name="Ferrioxamine E fe exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_feroxEfe_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_feroxEfe_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_feroxG_e" name="Ferrioxamine G exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_feroxG_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_feroxG_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_feroxGfe_e" name="Ferrioxamine G fe exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_feroxGfe_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_feroxGfe_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FEROXBFEabcpp" name="Ferrioxamine B fe transport via ABC system periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0194 and STM0192 and STM0193 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_feroxBfe_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_feroxBfe_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FEROXEFEabcpp" name="Ferrioxamine E fe transport via ABC system periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0194 and STM0192 and STM0193 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_feroxEfe_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_feroxEfe_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FEROXGFEabcpp" name="Ferrioxamine G fe transport via ABC system periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0194 and STM0192 and STM0193 )</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_feroxGfe_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_feroxGfe_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FEROXGFEtonex" name="Ferrioxamine G fe transport via ton system extermal " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0364 and ( STM1737 and STM3158 and STM3159 ) )</p>
- <p>SUBSYSTEM: Transport Outer Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_feroxGfe_e" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_feroxGfe_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FEROXBFEtex" name="Ferrioxamine B fe transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0364</p>
- <p>SUBSYSTEM: Transport Outer Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_feroxBfe_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_feroxBfe_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FEROXEFEtex" name="Ferrioxamine E fe transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0364</p>
- <p>SUBSYSTEM: Transport Outer Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_feroxEfe_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_feroxEfe_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FEROXGtex" name="Ferrioxamine G transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_feroxG_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_feroxG_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FEROXEtex" name="Ferrioxamine E transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_feroxE_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_feroxE_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FEROXBtex" name="Ferrioxamine B transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_feroxB_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_feroxB_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FEROXBtpp" name="Ferrioxamine B facilitated transport periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_feroxB_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_feroxB_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FEROXEtpp" name="Ferrioxamine E facilitated transport periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_feroxE_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_feroxE_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FEROXGtpp" name="Ferrioxamine G facilitated transport periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_feroxG_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_feroxG_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_drib_e" name="deoxy D Ribose exchange" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: Exchange</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_drib_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_drib_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DRIBtpp" name="deoxy D ribose transport via proton symport periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3792</p>
- <p>SUBSYSTEM: Transport Inner Membrane</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_drib_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_drib_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DRBK" name="deoxyribokinase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3793</p>
- <p>SUBSYSTEM: Alternate Carbon Metabolism</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_drib_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2dr5p_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DRIBtex" name="deoxyribose transport via diffusion extracellular to periplasm " reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: Transport Outer Membrane Porin</p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_drib_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_drib_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_SCYSSL" name="S-sulfo-L-cysteine sulfite lyase " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_gthrd_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_slcys_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_gthox_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_so3_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cys__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_SLCYSS" name="O-acetyl-L-serine sulfhydrylase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2440</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_tsul_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_acser_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ac_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_slcys_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GSHPO" name="glutathione peroxidase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1341</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gthrd_c" stoichiometry="2" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_gthox_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_HHDDI" name="2-hydroxyhepta-2,4-diene-1,7-dioate isomerase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1101</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_2hh24dd_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_2oh3d_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_INOSR" name="Ketoinositol reductase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: (STM4433 or STM4425)</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nadp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_inost_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_2ins_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadph_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MMSAD3" name="methylmalonate-semialdehyde dehydrogenase (malonic semialdehyde)" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4421</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_msa_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_accoa_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CHITPH" name="chitobiose-6-phosphate hydrolase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1316</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_chit6p_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_acgam6p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_acgam_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_D5KGK" name="2-Deoxy-5-Keto-D-gluconate kinase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4420</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_d5kg_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_d5kgp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_D5KGPA" name="2-Deoxy-5-keto-D-gluconate 6-phosphate aldolase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_d5kgp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_dhap_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_msa_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DHEDAA" name="2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: (STM1106 and STM2289)</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_24dhhed_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_sucsal_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DKDID" name="D-2,3-Diketo 4-deoxy-epi-inositol dehydratase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dkdi_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_d5kg_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_2INSD" name="2-Inosose dehydratase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4424.S</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_2ins_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dkdi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DTARTD" name="D-tartrate dehydratase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2949</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_tartr__D_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_oaa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NMNR" name="nmn hydrolysis" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2949</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_e" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nmn_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pi_e" stoichiometry="1" constant="true"/>
- <speciesReference species="M_rnam_e" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_RNMK" name="ribosylnicotinamide kinase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4580.S</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_rnam_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_nmn_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_OACT" name="O-antigen Acetyl-Transferase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2232</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_accoa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udcpo4_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_udcpo5_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_UDCPAT" name="Abequosyl transferase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2087</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_cdpabeq_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udcpgrm_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_udcpo4_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cdp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_UDCPMT" name="mannosyl transferase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2086</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_gdpmann_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udcpgr_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_udcpgrm_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_gdp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_UDCPRT" name="rhamnosyl transferase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2085</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_udcpg_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dtdprmn_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dtdp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udcpgr_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_UDCPGT" name="undecaprenol-phosphate galactosephosphotransferase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2082</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_udpgal_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udcpp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ump_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udcpg_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_TCBO" name="Tricarballylate oxidase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: (STM0690 and STM0691)</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_q8_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_tcb_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_acon__C_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_q8h2_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GLYBt6ex" name="betaine (glycine betaine) transport into periplasm" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_glyb_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glyb_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GLYBt6pp" name="betaine (glycine betaine) transport in/out via proton symport" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM4290</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glyb_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_glyb_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CHITOBex" name="Chitobiose transport into periplasm" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_chitob_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_chitob_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CHITOBpts" name="Chitobiose transport via PTS" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: (STM1314 and STM1312 and STM1313 and STM2431 and STM2432)</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_chitob_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pep_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_chit6p_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_RNAMtex" name="Nicotinamide riboside transport into periplasm" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_rnam_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_rnam_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_RNAMtpp" name="Nicotinamide riboside transport" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0757</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_rnam_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_rnam_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_OAO5t3ex" name="O-antigen unit (O5) translocase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_udcpo5_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_udcpo5_e" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_OAO5t3pp" name="O-antigen unit (O5) translocase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3926</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_udcpo5_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udcpo5_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_TCBt2pp" name="tricarballylate transport in via proton symport" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0689</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_tcb_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_tcb_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_TCBt2ex" name="tricarballylate transport into periplasm" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_tcb_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_tcb_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_TTONR1pp" name="Trithionate Reductase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: (STM1383 and STM1384 and STM1385)</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_tton_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_mql8_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_tsul_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_mqn8_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_so3_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="4" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_TTONtex" name="Trithionate transport" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_tton_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_tton_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_TTONR2pp" name="Trithionate Reductase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: (STM1383 and STM1384 and STM1385)</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_tton_e" stoichiometry="1" constant="true"/>
- <speciesReference species="M_q8h2_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_tsul_e" stoichiometry="1" constant="true"/>
- <speciesReference species="M_q8_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_so3_e" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="4" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_LEUt4rpp" name="L-leucine transport in via sodium symport" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0399</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_na1_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_leu__L_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_leu__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_na1_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_UPLA4NT" name="Undecaprenyl phosphate 4-amino-4-deoxy L-arabinose synthase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2298</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_udcpp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udpLa4n_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_uLa4n_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PSUDS" name="Pseudouridylate synthase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2662</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_r5p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ura_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_psd5p_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PFOR" name="Pyruvate flavodoxin oxidoreductase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ((STM0694 and STM1651) or (STM3045 and STM1651))</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_coa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fldox_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_accoa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_co2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fldrd_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_NNDMBRT" name="Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: (STM2016 or STM1221)</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nicrnt_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dmbzid_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_5prdmbz_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nac_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_biomass_iRR1083" name="biomass equation from http://www.biomedcentral.com/1752-0509/3/38" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pro__L_c" stoichiometry="0.256971" constant="true"/>
- <speciesReference species="M_nad_c" stoichiometry="0.00215" constant="true"/>
- <speciesReference species="M_dctp_c" stoichiometry="0.028567" constant="true"/>
- <speciesReference species="M_spmd_c" stoichiometry="0.007" constant="true"/>
- <speciesReference species="M_pa2_ST_p" stoichiometry="4e-06" constant="true"/>
- <speciesReference species="M_datp_c" stoichiometry="0.026137" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="53.303945" constant="true"/>
- <speciesReference species="M_succoa_c" stoichiometry="3e-06" constant="true"/>
- <speciesReference species="M_nadh_c" stoichiometry="5e-05" constant="true"/>
- <speciesReference species="M_cys__L_c" stoichiometry="0.017197" constant="true"/>
- <speciesReference species="M_asp__L_c" stoichiometry="0.374015" constant="true"/>
- <speciesReference species="M_ctp_c" stoichiometry="0.166895" constant="true"/>
- <speciesReference species="M_pg2_ST_p" stoichiometry="0.00042" constant="true"/>
- <speciesReference species="M_lys__L_c" stoichiometry="0.311404" constant="true"/>
- <speciesReference species="M_ptrc_c" stoichiometry="0.035" constant="true"/>
- <speciesReference species="M_ser__L_c" stoichiometry="0.317225" constant="true"/>
- <speciesReference species="M_dttp_c" stoichiometry="0.026137" constant="true"/>
- <speciesReference species="M_accoa_c" stoichiometry="5e-05" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="59.964348" constant="true"/>
- <speciesReference species="M_coa_c" stoichiometry="6e-06" constant="true"/>
- <speciesReference species="M_peptido_ST_p" stoichiometry="0.049404" constant="true"/>
- <speciesReference species="M_asn__L_c" stoichiometry="0.272689" constant="true"/>
- <speciesReference species="M_udpg_c" stoichiometry="0.003" constant="true"/>
- <speciesReference species="M_phe__L_c" stoichiometry="0.13874" constant="true"/>
- <speciesReference species="M_trp__L_c" stoichiometry="0.087887" constant="true"/>
- <speciesReference species="M_gly_c" stoichiometry="1.498961" constant="true"/>
- <speciesReference species="M_clpn2_ST_p" stoichiometry="1.4e-05" constant="true"/>
- <speciesReference species="M_nadp_c" stoichiometry="0.00013" constant="true"/>
- <speciesReference species="M_val__L_c" stoichiometry="0.284577" constant="true"/>
- <speciesReference species="M_met__L_c" stoichiometry="0.104726" constant="true"/>
- <speciesReference species="M_arg__L_c" stoichiometry="0.130805" constant="true"/>
- <speciesReference species="M_5mthf_c" stoichiometry="0.05" constant="true"/>
- <speciesReference species="M_nadph_c" stoichiometry="0.0004" constant="true"/>
- <speciesReference species="M_tyr__L_c" stoichiometry="0.040246" constant="true"/>
- <speciesReference species="M_glycogen_c" stoichiometry="0.027476" constant="true"/>
- <speciesReference species="M_glu__L_c" stoichiometry="0.256058" constant="true"/>
- <speciesReference species="M_his__L_c" stoichiometry="0.067143" constant="true"/>
- <speciesReference species="M_fad_c" stoichiometry="1e-05" constant="true"/>
- <speciesReference species="M_12dgr2_ST_p" stoichiometry="0.000188" constant="true"/>
- <speciesReference species="M_dgtp_c" stoichiometry="0.028567" constant="true"/>
- <speciesReference species="M_thr__L_c" stoichiometry="0.349831" constant="true"/>
- <speciesReference species="M_ala__L_c" stoichiometry="0.748399" constant="true"/>
- <speciesReference species="M_ile__L_c" stoichiometry="0.087361" constant="true"/>
- <speciesReference species="M_gln__L_c" stoichiometry="0.200228" constant="true"/>
- <speciesReference species="M_ps2_ST_p" stoichiometry="4e-06" constant="true"/>
- <speciesReference species="M_amp_c" stoichiometry="0.001" constant="true"/>
- <speciesReference species="M_leu__L_c" stoichiometry="0.206491" constant="true"/>
- <speciesReference species="M_gtp_c" stoichiometry="0.186332" constant="true"/>
- <speciesReference species="M_colipaOA_e" stoichiometry="0.000937" constant="true"/>
- <speciesReference species="M_utp_c" stoichiometry="0.154549" constant="true"/>
- <speciesReference species="M_pe2_ST_p" stoichiometry="0.001531" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_c" stoichiometry="58.266936" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="59.81" constant="true"/>
- <speciesReference species="M_ppi_c" stoichiometry="0.771532" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="59.81" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_peptido_ST" name="peptido_ST formation reaction" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_murein5p5p_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_peptido_ST_p" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_pe2_ST" name="membrane phosphatidylethanolamine composition based on http://www.biomedcentral.com/1752-0509/3/38" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pe140_p" stoichiometry="14" constant="true"/>
- <speciesReference species="M_pe180_p" stoichiometry="2" constant="true"/>
- <speciesReference species="M_pe181_p" stoichiometry="3" constant="true"/>
- <speciesReference species="M_pe161_p" stoichiometry="4" constant="true"/>
- <speciesReference species="M_pe160_p" stoichiometry="76" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pe2_ST_p" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_pg2_ST" name="membrane phosphatidylglycerol composition based on http://www.biomedcentral.com/1752-0509/3/38" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pg161_p" stoichiometry="4" constant="true"/>
- <speciesReference species="M_pg160_p" stoichiometry="76" constant="true"/>
- <speciesReference species="M_pg180_p" stoichiometry="2" constant="true"/>
- <speciesReference species="M_pg181_p" stoichiometry="3" constant="true"/>
- <speciesReference species="M_pg140_p" stoichiometry="14" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pg2_ST_p" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_clpn2_ST" name="membrane cardiolipin composition based on http://www.biomedcentral.com/1752-0509/3/38" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_clpn160_p" stoichiometry="76" constant="true"/>
- <speciesReference species="M_clpn161_p" stoichiometry="4" constant="true"/>
- <speciesReference species="M_clpn140_p" stoichiometry="14" constant="true"/>
- <speciesReference species="M_clpn181_p" stoichiometry="3" constant="true"/>
- <speciesReference species="M_clpn180_p" stoichiometry="2" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_clpn2_ST_p" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_pa2_ST" name="membrane phosphatidate composition based on http://www.biomedcentral.com/1752-0509/3/38" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pa161_p" stoichiometry="4" constant="true"/>
- <speciesReference species="M_pa181_p" stoichiometry="3" constant="true"/>
- <speciesReference species="M_pa180_p" stoichiometry="2" constant="true"/>
- <speciesReference species="M_pa140_p" stoichiometry="14" constant="true"/>
- <speciesReference species="M_pa160_p" stoichiometry="76" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pa2_ST_p" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ps2_ST" name="membrane phosphatidylserine composition based on http://www.biomedcentral.com/1752-0509/3/38" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ps181_c" stoichiometry="3" constant="true"/>
- <speciesReference species="M_ps140_c" stoichiometry="14" constant="true"/>
- <speciesReference species="M_ps180_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_ps161_c" stoichiometry="4" constant="true"/>
- <speciesReference species="M_ps160_c" stoichiometry="76" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ps2_ST_p" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_12dgr2_ST" name="membrane 1-2-diacylglycerol composition based on http://www.biomedcentral.com/1752-0509/3/38" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_12dgr161_p" stoichiometry="4" constant="true"/>
- <speciesReference species="M_12dgr180_p" stoichiometry="2" constant="true"/>
- <speciesReference species="M_12dgr160_p" stoichiometry="76" constant="true"/>
- <speciesReference species="M_12dgr181_p" stoichiometry="3" constant="true"/>
- <speciesReference species="M_12dgr140_p" stoichiometry="14" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_12dgr2_ST_p" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_OAL_ST" name="O-antigen ligase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3713</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_colipa_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_OA_ST_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_colipaOA_e" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udcpdp_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_OA4L_ST" name="O-antigen 4 polymerase with long chain" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: (STM1332 and STM2079)</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_udcpo4_p" stoichiometry="25" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_OA_ST_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="24" constant="true"/>
- <speciesReference species="M_udcpdp_p" stoichiometry="24" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_OA5L_ST" name="O-antigen 5 polymerase with long chain" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: (STM1332 and STM2079)</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_udcpo5_p" stoichiometry="25" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_p" stoichiometry="24" constant="true"/>
- <speciesReference species="M_OA_ST_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udcpdp_p" stoichiometry="24" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_OA4VL_ST" name="O-antigen 4 polymerase with very long chain" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: (STM1332 and STM0589)</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_udcpo4_p" stoichiometry="100" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_p" stoichiometry="99" constant="true"/>
- <speciesReference species="M_OA_ST_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udcpdp_p" stoichiometry="99" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_OA5VL_ST" name="O-antigen 5 polymerase with very long chain" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: (STM1332 and STM0589)</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_udcpo5_p" stoichiometry="100" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_p" stoichiometry="99" constant="true"/>
- <speciesReference species="M_OA_ST_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udcpdp_p" stoichiometry="99" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_OAO4t3pp" name="O-antigen translocase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3926</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_udcpo4_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_udcpo4_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_OAO4t3ex" name="O-antigen translocase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_udcpo4_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_udcpo4_e" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PYDXtex" name="Pyridoxal transport" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pydx_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pydx_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PYDXtpp" name="Pyridoxal transport" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pydx_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pydx_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PYDXNtex" name="Pyrdoxine transport" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pydxn_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pydxn_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PYDXNtpp" name="Pyrdoxine transport" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pydxn_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pydxn_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_HEXt2rpp" name="hexanoate transport via proton symport, reversible (periplasm)" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_hxa_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_hxa_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_4HTHRtex" name="4-hydroxy-L-threonine transport" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_4hthr_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_4hthr_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_4HTHRtrpp" name="4-hydroxy-L-threonine transport" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3243</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_4hthr_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_4hthr_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_4HTHRK" name="4-Hydroxy-L-threonine kinase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0003</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_4hthr_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_phthr_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_35PDE" name="3,5-cAMP Phosphodiesterase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_camp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_amp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_UROCANH" name="urocanate hydratase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_urocan_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_4iz5pp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_AADDFT" name="4-alpha-L-fucosyltransferase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3927</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_unagamu_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dtdp4aaddg_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_unagamuf_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dtdp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ENTERHpp" name="enterobactin hydrolase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2776</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_enter_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_23dhbzs3_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_SALCHS4Hpp" name="salmochelin s4 hydrolase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2776</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_salchs4_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_salchs2_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_SALCHS4FEHpp" name="salmochelin s4 fe3 hydrolase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2776</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_salchs4fe_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_salchs2fe_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DHBSZ3tex" name="23dhbsz secretion" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_23dhbzs3_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_23dhbzs3_e" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DHBSZ3FEexs" name="23dhbsz3 Fe III sequestration" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: s0001</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_23dhbzs3_e" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fe3_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_fe3dhbzs3_e" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DHBSZ3FEtonex" name="23dhbsz3 Fe III import" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: (STM2199 or STM0585 or STM2777) and (STM1737 and STM3159 and STM3158)</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fe3dhbzs3_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_fe3dhbzs3_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DHBSZ3FEabcpp" name="23dhbsz3 Fe III transport via ABC system periplasm" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_fe3dhbzs3_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fe3dhbzs3_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FEDHBZS3R1" name="fe3dhbzs3 Fe III reduction and offloading" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2775 or STM0586</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_fadh2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fe3dhbzs3_c" stoichiometry="2" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_fe2_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_fad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_23dhbzs3_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FEDHBZS3R2" name="fe3dhbzs3 Fe III reduction and offloading" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2775 or STM0586</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_fmnh2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fe3dhbzs3_c" stoichiometry="2" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_fmn_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fe2_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_23dhbzs3_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FEDHBZS3R3" name="fe3dhbzs3 Fe III reduction and offloading" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2775 or STM0586</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_rbflvrd_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fe3dhbzs3_c" stoichiometry="2" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ribflv_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fe2_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_23dhbzs3_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_SALCHS2tex" name="Salmochelin s2 secretion" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_salchs2_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_salchs2_e" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_SALCHS2FEexs" name="Salmochelin s2 Fe III sequestration" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: s0001</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_fe3_e" stoichiometry="1" constant="true"/>
- <speciesReference species="M_salchs2_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_salchs2fe_e" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_SALCHS2FEtonex" name="Salmochelin s2 Fe III import" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2777</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_salchs2fe_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_salchs2fe_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_SALCHS2FEabcpp" name="Salmochelin s2 Fe III transport via ABC system periplasm" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: (STM0594 and STM0590 and STM0592 and STM0591)</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_salchs2fe_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_salchs2fe_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_SALCHS2FER1" name="salmochelin s2 Fe III reduction and offloading" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2775</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_salchs2fe_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_fadh2_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_fad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fe2_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_salchs2_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_SALCHS2FER2" name="salmochelin s2 Fe III reduction and offloading" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2775</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_fmnh2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_salchs2fe_c" stoichiometry="2" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_fmn_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fe2_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_salchs2_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_SALCHS2FER3" name="salmochelin s2 Fe III reduction and offloading" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2775</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_rbflvrd_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_salchs2fe_c" stoichiometry="2" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_fe2_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_ribflv_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_salchs2_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_SALCHS2H" name="Salmochelin s2 hydrolase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2775</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_salchs2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_salchsx_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_salchs1_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_SALCHS1H" name="Salmochelin s1 hydrolase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2775</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_salchs1_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_23dhbzs_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_salchsx_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ENTERH" name="enterobactin hydrolase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2775 or STM0586</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_enter_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_23dhbzs3_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DHBZS3H" name="23DHBS polymer hydrolase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2775 or STM0586</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_23dhbzs3_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_23dhbzs2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_23dhbzs_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DHBZS2H" name="23DHBS polymer hydrolase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2775 or STM0586</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_23dhbzs2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_23dhbzs_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ENTERtex" name="Enterobactin secretion" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3186</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_enter_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_enter_e" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ENTERGLCT1" name="Glycosyl transferase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2773</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_enter_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_udpg_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_udp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_entermg_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ENTERGLCT2" name="Glycosyl transferase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2773</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_udpg_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_entermg_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_udp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_salchs4_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FEROXBFER1" name="Ferrioxamine Fe III reduction and offloading" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3979</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_feroxBfe_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_fadh2_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_feroxB_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_fad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fe2_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FEROXBFER2" name="Ferrioxamine Fe III reduction and offloading" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3979</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_fmnh2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_feroxBfe_c" stoichiometry="2" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_fmn_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fe2_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_feroxB_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FEROXBFER3" name="Ferrioxamine Fe III reduction and offloading" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3979</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_feroxBfe_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_rbflvrd_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_feroxB_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_fe2_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_ribflv_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FEROXEFER1" name="Ferrioxamine Fe III reduction and offloading" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3979</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_fadh2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_feroxEfe_c" stoichiometry="2" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_fad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fe2_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_feroxE_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FEROXEFER2" name="Ferrioxamine Fe III reduction and offloading" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3979</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_feroxEfe_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_fmnh2_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_fmn_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_feroxE_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_fe2_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FEROXEFER3" name="Ferrioxamine Fe III reduction and offloading" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3979</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_feroxEfe_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_rbflvrd_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ribflv_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fe2_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_feroxE_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FEROXGFER1" name="Ferrioxamine Fe III reduction and offloading" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3979</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_fadh2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_feroxGfe_c" stoichiometry="2" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_fad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fe2_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_feroxG_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FEROXGFER2" name="Ferrioxamine Fe III reduction and offloading" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3979</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_feroxGfe_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_fmnh2_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_fmn_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fe2_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_feroxG_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FEROXGFER3" name="Ferrioxamine Fe III reduction and offloading" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3979</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_rbflvrd_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_feroxGfe_c" stoichiometry="2" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ribflv_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fe2_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_feroxG_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GULNLtex" name="L-gulonate transport" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_guln__L_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_guln__L_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GULNLtpp" name="L-gulonate transport" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_guln__L_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_guln__L_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GULNLR" name="L-gulonate reductase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nad_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_guln__L_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_fruur_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nadh_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DXYLUDtex" name="1-deoxy-d-xyluose transport" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0320 or STM0999 or STM1473 or STM2267 )</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_dxyl_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_dxyl_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DXYLUDtpp" name="1-deoxy-d-xyluose transport" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_dxyl_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_dxyl_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_MUREINLPPTP" name="L,D-transpeptidase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: (STM0837 or STM1215 or STM1375)</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_murein5p5p_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_lpp_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ala__D_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_murein_lpp_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_APOLPPS" name="lpp signal peptidase - murein" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0047</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_diglyceride_prolpp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_apolpp_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_lpp_sp_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PROLPPOATPE160" name="O-acyl Transferase - murein" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_pe160_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glyceryl_prolpp_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_diglyceride_prolpp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2agpe160_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PROLPPOATPG160" name="O-acyl Transferase - murein" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_glyceryl_prolpp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pg160_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_2agpg160_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_diglyceride_prolpp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_PROLPPGT160" name="Glyceryl Transferase - murein" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3002</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_prolpp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pg160_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_2agpg160_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_glyceryl_prolpp_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DMBZIDS" name="DMB synthase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2016</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ribflv_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_dmbzid_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_2HH24DDH1" name="2hh24dd hydratase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1105</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2hh24dd_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_24dhhed_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_GALCTND" name="galactonate dehydratase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3828</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_galctn__D_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_2dh3dgal_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DDPGALA" name="2-dehydro-3-deoxy-6-phosphogalactonate aldolase" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_2dh3dgal6p_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_g3p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FOAMtrpp" name="Formamide transport" reversible="true" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_foam_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_foam_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FEENTERR1" name="Fe enterobactin reduction Fe III unloading " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0586</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_feenter_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_fadh2_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_fad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fe2_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_enter_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FEENTERR2" name="Fe enterobactin reduction Fe III unloading " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0586</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_feenter_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_fmnh2_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_fmn_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_enter_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_fe2_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FEENTERR3" name="Fe enterobactin reduction Fe III unloading " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0586</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_feenter_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_rbflvrd_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ribflv_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fe2_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_enter_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_SALCHS4FER1" name="Salmochelin S4 Fe III reduction Fe III unloading " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2775</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_salchs4fe_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_fadh2_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_salchs4_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_fe2_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_fad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_SALCHS4FER2" name="Salmochelin S4 Fe III reduction Fe III unloading " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2775</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_fmnh2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_salchs4fe_c" stoichiometry="2" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_fmn_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fe2_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_salchs4_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_SALCHS4FER3" name="Salmochelin S4 Fe III reduction Fe III unloading " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2775</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_salchs4fe_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_rbflvrd_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ribflv_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fe2_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_salchs4_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_SALCHS4FEtonex" name="Salmochelin S4 Fe III transport via ton system extracellular " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( ( STM0585 or STM2199 or STM2777 ) and ( STM1737 and STM3158 and STM3159 ) )</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_salchs4fe_e" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_salchs4fe_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_HISNH4L" name="Histidine ammonia lyase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM0791</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_his__L_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_urocan_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nh4_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_AB6PGH" name="Arbutin 6 phosphate glucohydrolase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3051</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_arbt6p_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_hqn_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_g6p_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_SARCOX" name="sarcosine oxidase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM1160</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_o2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_sarcs_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_gly_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fald_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FE3HOXabcpp" name="ferric hydroxamate transport via ABC system periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0194 and STM0192 and STM0193 )</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fe3hox_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_fe3hox_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FEOXAMR1" name="ferroxamine reductase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3979</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_fadh2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_feoxam_c" stoichiometry="2" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_feoxam__un_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_fe2_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_fad_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FEOXAMR2" name="ferroxamine reductase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3979</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_fmnh2_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_feoxam_c" stoichiometry="2" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_fmn_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_feoxam__un_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_fe2_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_FEOXAMR3" name="ferroxamine reductase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM3979</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_rbflvrd_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_feoxam_c" stoichiometry="2" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ribflv_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_feoxam__un_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_fe2_c" stoichiometry="2" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="2" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DHBSH" name="2 3 dihydroxybenzoylserine hydrolase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_23dhbzs_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ser__L_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_23dhb_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ALPATE160pp" name="apolipoprotein N acyltransferase phosphatidylethanolamine periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0666 and STM1377 )</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_apolpp_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pe160_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_2agpe160_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_lpp_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_ALPATG160pp" name="apolipoprotein N acyltransferase phosphatidylglycerol periplasm " reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: ( STM0666 and STM1377 )</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_apolpp_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_pg160_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_2agpg160_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_lpp_p" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_CYSLDS" name="L-cysteine desulfhydrase" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_cys__L_c" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h2s_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_nh4_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_INOSTtpp" name="myo-inositol transport" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_inost_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_inost_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_HDCAt2pp" name="Hexadecanoate transport via proton symport" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2391</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_hdca_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_hdca_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_OCDCAt2pp" name="Octadecanoate transport via proton symport" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2392</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ocdca_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ocdca_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_OCDCEAt2pp" name="Octadecenoate transport via proton symport" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2392</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ocdcea_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ocdcea_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_TTDCAt2pp" name="Tetradecanoate transport via proton symport" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2393</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_ttdca_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ttdca_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_DDCAt2pp" name="Dodecanoate transport via proton symport" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: STM2393</p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_ddca_p" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_p" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ddca_c" stoichiometry="1" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_biomass_iRR1083_metals" name="biomass equation from http://www.biomedcentral.com/1752-0509/3/38 including metals from iAF1260 biomass function" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_nad_c" stoichiometry="0.00215" constant="true"/>
- <speciesReference species="M_ala__L_c" stoichiometry="0.748399" constant="true"/>
- <speciesReference species="M_clpn2_ST_p" stoichiometry="1.4e-05" constant="true"/>
- <speciesReference species="M_nadh_c" stoichiometry="5e-05" constant="true"/>
- <speciesReference species="M_peptido_ST_p" stoichiometry="0.049404" constant="true"/>
- <speciesReference species="M_mg2_c" stoichiometry="0.007895" constant="true"/>
- <speciesReference species="M_ca2_c" stoichiometry="0.004737" constant="true"/>
- <speciesReference species="M_met__L_c" stoichiometry="0.104726" constant="true"/>
- <speciesReference species="M_mn2_c" stoichiometry="0.003158" constant="true"/>
- <speciesReference species="M_dttp_c" stoichiometry="0.026137" constant="true"/>
- <speciesReference species="M_nadph_c" stoichiometry="0.0004" constant="true"/>
- <speciesReference species="M_sheme_c" stoichiometry="0.000223" constant="true"/>
- <speciesReference species="M_ile__L_c" stoichiometry="0.087361" constant="true"/>
- <speciesReference species="M_pg2_ST_p" stoichiometry="0.00042" constant="true"/>
- <speciesReference species="M_fe2_c" stoichiometry="0.007106" constant="true"/>
- <speciesReference species="M_gtp_c" stoichiometry="0.186332" constant="true"/>
- <speciesReference species="M_pro__L_c" stoichiometry="0.256971" constant="true"/>
- <speciesReference species="M_arg__L_c" stoichiometry="0.130805" constant="true"/>
- <speciesReference species="M_ps2_ST_p" stoichiometry="4e-06" constant="true"/>
- <speciesReference species="M_phe__L_c" stoichiometry="0.13874" constant="true"/>
- <speciesReference species="M_ser__L_c" stoichiometry="0.317225" constant="true"/>
- <speciesReference species="M_h2o_c" stoichiometry="53.303945" constant="true"/>
- <speciesReference species="M_colipaOA_e" stoichiometry="0.000937" constant="true"/>
- <speciesReference species="M_gly_c" stoichiometry="1.498961" constant="true"/>
- <speciesReference species="M_atp_c" stoichiometry="59.964348" constant="true"/>
- <speciesReference species="M_tyr__L_c" stoichiometry="0.040246" constant="true"/>
- <speciesReference species="M_fad_c" stoichiometry="1e-05" constant="true"/>
- <speciesReference species="M_cl_c" stoichiometry="0.004737" constant="true"/>
- <speciesReference species="M_12dgr2_ST_p" stoichiometry="0.000188" constant="true"/>
- <speciesReference species="M_coa_c" stoichiometry="6e-06" constant="true"/>
- <speciesReference species="M_utp_c" stoichiometry="0.154549" constant="true"/>
- <speciesReference species="M_his__L_c" stoichiometry="0.067143" constant="true"/>
- <speciesReference species="M_cu2_c" stoichiometry="0.003158" constant="true"/>
- <speciesReference species="M_k_c" stoichiometry="0.1776" constant="true"/>
- <speciesReference species="M_datp_c" stoichiometry="0.026137" constant="true"/>
- <speciesReference species="M_leu__L_c" stoichiometry="0.206491" constant="true"/>
- <speciesReference species="M_ctp_c" stoichiometry="0.166895" constant="true"/>
- <speciesReference species="M_accoa_c" stoichiometry="5e-05" constant="true"/>
- <speciesReference species="M_spmd_c" stoichiometry="0.007" constant="true"/>
- <speciesReference species="M_asn__L_c" stoichiometry="0.272689" constant="true"/>
- <speciesReference species="M_ptrc_c" stoichiometry="0.035" constant="true"/>
- <speciesReference species="M_lys__L_c" stoichiometry="0.311404" constant="true"/>
- <speciesReference species="M_5mthf_c" stoichiometry="0.05" constant="true"/>
- <speciesReference species="M_mobd_c" stoichiometry="0.003158" constant="true"/>
- <speciesReference species="M_dgtp_c" stoichiometry="0.028567" constant="true"/>
- <speciesReference species="M_amp_c" stoichiometry="0.001" constant="true"/>
- <speciesReference species="M_trp__L_c" stoichiometry="0.087887" constant="true"/>
- <speciesReference species="M_udpg_c" stoichiometry="0.003" constant="true"/>
- <speciesReference species="M_pa2_ST_p" stoichiometry="4e-06" constant="true"/>
- <speciesReference species="M_zn2_c" stoichiometry="0.003158" constant="true"/>
- <speciesReference species="M_dctp_c" stoichiometry="0.028567" constant="true"/>
- <speciesReference species="M_asp__L_c" stoichiometry="0.374015" constant="true"/>
- <speciesReference species="M_cys__L_c" stoichiometry="0.017197" constant="true"/>
- <speciesReference species="M_nadp_c" stoichiometry="0.00013" constant="true"/>
- <speciesReference species="M_glu__L_c" stoichiometry="0.256058" constant="true"/>
- <speciesReference species="M_glycogen_c" stoichiometry="0.027476" constant="true"/>
- <speciesReference species="M_pe2_ST_p" stoichiometry="0.001531" constant="true"/>
- <speciesReference species="M_val__L_c" stoichiometry="0.284577" constant="true"/>
- <speciesReference species="M_thr__L_c" stoichiometry="0.349831" constant="true"/>
- <speciesReference species="M_cobalt2_c" stoichiometry="0.003158" constant="true"/>
- <speciesReference species="M_succoa_c" stoichiometry="3e-06" constant="true"/>
- <speciesReference species="M_gln__L_c" stoichiometry="0.200228" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_ppi_c" stoichiometry="0.771532" constant="true"/>
- <speciesReference species="M_adp_c" stoichiometry="59.81" constant="true"/>
- <speciesReference species="M_pi_c" stoichiometry="59.81" constant="true"/>
- <speciesReference species="M_h_c" stoichiometry="58.266936" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_dxyl_e" name="dxyl_e Boundary Reaction" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_dxyl_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_dxyl_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_salchs2fe_e" name="salchs2fe_e Boundary Reaction" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_salchs2fe_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_salchs2fe_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_rnam_e" name="rnam_e Boundary Reaction" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_rnam_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_rnam_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_colipaOA_e" name="colipaOA_e Boundary Reaction" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_colipaOA_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_colipaOA_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_udcpo4_e" name="udcpo4_e Boundary Reaction" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_udcpo4_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_udcpo4_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_tcb_e" name="tcb_e Boundary Reaction" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_tcb_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_tcb_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_fe3dhbzs3_e" name="fe3dhbzs3_e Boundary Reaction" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_fe3dhbzs3_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_fe3dhbzs3_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_23dhbzs3_e" name="23dhbzs3_e Boundary Reaction" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_23dhbzs3_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_23dhbzs3_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_guln__L_e" name="guln__L_e Boundary Reaction" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_guln__L_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_guln__L_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_udcpo5_e" name="udcpo5_e Boundary Reaction" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_udcpo5_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_udcpo5_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_4hthr_e" name="4hthr_e Boundary Reaction" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_4hthr_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_4hthr_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_salchs2_e" name="salchs2_e Boundary Reaction" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_salchs2_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_salchs2_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- <reaction id="R_EX_tton_e" name="tton_e Boundary Reaction" reversible="false" fast="false">
- <notes>
- <html xmlns="http://www.w3.org/1999/xhtml">
- <p>GENE_ASSOCIATION: </p>
- <p>SUBSYSTEM: </p>
- </html>
- </notes>
- <listOfReactants>
- <speciesReference species="M_tton_e" stoichiometry="1" constant="true"/>
- </listOfReactants>
- <listOfProducts>
- <speciesReference species="M_tton_e_boundary" stoichiometry="1" constant="true"/>
- </listOfProducts>
- </reaction>
- </listOfReactions>
- <fbc:listOfFluxBounds>
- <fbc:fluxBound fbc:reaction="R_12DGR120tipp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_12DGR120tipp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_12DGR140tipp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_12DGR140tipp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_12DGR141tipp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_12DGR141tipp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_12DGR160tipp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_12DGR160tipp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_12DGR161tipp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_12DGR161tipp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_12DGR180tipp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_12DGR180tipp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_12DGR181tipp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_12DGR181tipp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_12PPDRtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_12PPDRtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_12PPDRtpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_12PPDRtpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_12PPDStex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_12PPDStex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_12PPDStpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_12PPDStpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_14GLUCANabcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_14GLUCANabcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_14GLUCANtexi" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_14GLUCANtexi" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_23CAMPtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_23CAMPtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_23CCMPtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_23CCMPtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_23CGMPtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_23CGMPtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_23CUMPtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_23CUMPtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_23DAPPAt2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_23DAPPAt2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_23DAPPAtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_23DAPPAtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_23PDE2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_23PDE2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_23PDE4pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_23PDE4pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_23PDE7pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_23PDE7pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_23PDE9pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_23PDE9pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_26DAHtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_26DAHtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_2AGPA120tipp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_2AGPA120tipp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_2AGPA140tipp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_2AGPA140tipp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_2AGPA141tipp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_2AGPA141tipp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_2AGPA160tipp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_2AGPA160tipp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_2AGPA161tipp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_2AGPA161tipp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_2AGPA180tipp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_2AGPA180tipp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_2AGPA181tipp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_2AGPA181tipp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_2AGPE120tipp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_2AGPE120tipp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_2AGPE140tipp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_2AGPE140tipp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_2AGPE141tipp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_2AGPE141tipp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_2AGPE160tipp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_2AGPE160tipp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_2AGPE161tipp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_2AGPE161tipp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_2AGPE180tipp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_2AGPE180tipp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_2AGPE181tipp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_2AGPE181tipp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_2AGPEAT120" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_2AGPEAT120" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_2AGPEAT140" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_2AGPEAT140" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_2AGPEAT141" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_2AGPEAT141" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_2AGPEAT160" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_2AGPEAT160" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_2AGPEAT161" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_2AGPEAT161" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_2AGPEAT180" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_2AGPEAT180" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_2AGPEAT181" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_2AGPEAT181" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_2AGPG120tipp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_2AGPG120tipp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_2AGPG140tipp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_2AGPG140tipp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_2AGPG141tipp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_2AGPG141tipp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_2AGPG160tipp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_2AGPG160tipp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_2AGPG161tipp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_2AGPG161tipp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_2AGPG180tipp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_2AGPG180tipp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_2AGPG181tipp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_2AGPG181tipp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_2AGPGAT120" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_2AGPGAT120" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_2AGPGAT140" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_2AGPGAT140" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_2AGPGAT141" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_2AGPGAT141" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_2AGPGAT160" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_2AGPGAT160" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_2AGPGAT161" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_2AGPGAT161" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_2AGPGAT180" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_2AGPGAT180" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_2AGPGAT181" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_2AGPGAT181" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_2DGLCNRx" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_2DGLCNRx" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_2DGLCNRy" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_2DGLCNRy" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_2DGULRx" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_2DGULRx" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_2DGULRy" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_2DGULRy" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_2MAHMP" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_2MAHMP" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_34dhpactex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_34dhpactex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_3AMPtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_3AMPtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_3CMPtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_3CMPtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_3GMPtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_3GMPtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_3HAD100" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_3HAD100" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_3HAD120" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_3HAD120" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_3HAD121" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_3HAD121" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_3HAD140" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_3HAD140" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_3HAD141" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_3HAD141" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_3HAD160" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_3HAD160" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_3HAD161" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_3HAD161" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_3HAD180" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_3HAD180" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_3HAD181" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_3HAD181" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_3HAD40" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_3HAD40" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_3HAD60" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_3HAD60" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_3HAD80" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_3HAD80" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_3KGK" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_3KGK" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_3NTD2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_3NTD2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_3NTD4pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_3NTD4pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_3NTD7pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_3NTD7pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_3NTD9pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_3NTD9pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_3OAR100" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_3OAR100" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_3OAR120" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_3OAR120" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_3OAR121" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_3OAR121" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_3OAR140" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_3OAR140" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_3OAR141" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_3OAR141" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_3OAR160" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_3OAR160" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_3OAR161" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_3OAR161" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_3OAR180" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_3OAR180" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_3OAR181" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_3OAR181" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_3OAR40" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_3OAR40" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_3OAR60" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_3OAR60" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_3OAR80" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_3OAR80" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_3OAS100" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_3OAS100" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_3OAS120" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_3OAS120" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_3OAS121" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_3OAS121" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_3OAS140" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_3OAS140" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_3OAS141" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_3OAS141" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_3OAS160" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_3OAS160" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_3OAS161" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_3OAS161" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_3OAS180" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_3OAS180" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_3OAS181" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_3OAS181" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_3OAS60" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_3OAS60" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_3OAS80" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_3OAS80" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_3PEPTabcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_3PEPTabcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_3PEPTtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_3PEPTtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_3UMPtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_3UMPtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_4HOXPACDtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_4HOXPACDtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_4PCP" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_4PCP" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_4PCPpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_4PCPpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_4PEPTabcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_4PEPTabcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_4PEPTtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_4PEPTtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_5DGLCNR" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_5DGLCNR" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_5DGLCNt2rpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_5DGLCNt2rpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_5DGLCNtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_5DGLCNtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_5DOAN" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_5DOAN" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_A5PISO" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_A5PISO" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_AACPS1" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_AACPS1" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_AACPS2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_AACPS2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_AACPS3" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_AACPS3" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_AACPS4" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_AACPS4" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_AACPS5" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_AACPS5" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_AACPS6" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_AACPS6" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_AACPS7" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_AACPS7" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_AACPS8" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_AACPS8" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_AACPS9" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_AACPS9" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_AACTOOR" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_AACTOOR" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_AAMYL" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_AAMYL" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_AAMYLpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_AAMYLpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ABTA" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ABTA" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ABUTD" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ABUTD" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ABUTt2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ABUTt2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ABUTtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ABUTtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ACACtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ACACtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ACALD" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ACALD" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ACALDtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ACALDtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ACALDtpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ACALDtpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ACBIPGT" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ACBIPGT" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ACCOAC" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ACCOAC" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ACCOAL" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ACCOAL" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ACGAL1PPpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ACGAL1PPpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ACGAL1Ptex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ACGAL1Ptex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ACGALtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ACGALtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ACGAM1PPpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ACGAM1PPpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ACGAM1Ptex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ACGAM1Ptex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ACGAMK" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ACGAMK" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ACGAMT" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ACGAMT" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ACGAptspp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ACGAptspp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ACGAtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ACGAtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ACGK" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ACGK" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ACGS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ACGS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ACHBS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ACHBS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ACKr" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ACKr" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ACLS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ACLS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ACM6PH" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ACM6PH" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ACMAMUT" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ACMAMUT" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ACMANAptspp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ACMANAptspp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ACMANAtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ACMANAtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ACMUMtex" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ACMUMtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ACNAMt2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ACNAMt2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ACNAMtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ACNAMtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ACNML" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ACNML" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ACOAD1f" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ACOAD1f" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ACOAD2f" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ACOAD2f" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ACOAD3f" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ACOAD3f" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ACOAD4f" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ACOAD4f" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ACOAD5f" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ACOAD5f" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ACOAD6f" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ACOAD6f" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ACOAD7f" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ACOAD7f" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ACOAD8f" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ACOAD8f" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ACOATA" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ACOATA" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ACODA" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ACODA" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ACOLIPAtex" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ACOLIPAtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ACONIs" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ACONIs" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ACONTa" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ACONTa" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ACONTb" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ACONTb" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ACOTA" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ACOTA" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ACPS1" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ACPS1" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ACS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ACS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ACSERtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ACSERtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ACSERtpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ACSERtpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ACt2rpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ACt2rpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ACt4pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ACt4pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ACtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ACtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ADA" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ADA" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ADCL" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ADCL" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ADCS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ADCS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ADEt2rpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ADEt2rpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ADEtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ADEtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ADK1" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ADK1" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ADK3" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ADK3" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ADK4" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ADK4" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ADMDC" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ADMDC" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ADNCYC" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ADNCYC" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ADNK1" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ADNK1" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ADNUC" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ADNUC" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ADNt2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ADNt2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ADNt2rpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ADNt2rpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ADNtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ADNtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ADOCBLabcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ADOCBLabcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ADOCBLtonex" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ADOCBLtonex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ADPRDP" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ADPRDP" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ADPT" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ADPT" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ADSK" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ADSK" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ADSL1r" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ADSL1r" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ADSL2r" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ADSL2r" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ADSS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ADSS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_AGDC" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_AGDC" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_AGM3PA" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_AGM3PA" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_AGM3PApp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_AGM3PApp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_AGM3PH" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_AGM3PH" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_AGM3Pt2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_AGM3Pt2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_AGM4PA" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_AGM4PA" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_AGM4PApp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_AGM4PApp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_AGM4PCP" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_AGM4PCP" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_AGM4PCPpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_AGM4PCPpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_AGM4PH" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_AGM4PH" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_AGM4Pt2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_AGM4Pt2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_AGMH" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_AGMH" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_AGMHE" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_AGMHE" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_AGMT" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_AGMT" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_AGMt2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_AGMt2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_AGMtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_AGMtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_AGPAT120" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_AGPAT120" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_AGPAT140" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_AGPAT140" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_AGPAT141" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_AGPAT141" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_AGPAT160" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_AGPAT160" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_AGPAT161" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_AGPAT161" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_AGPAT180" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_AGPAT180" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_AGPAT181" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_AGPAT181" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_AGPR" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_AGPR" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_AHCYSNS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_AHCYSNS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_AICART" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_AICART" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_AIRC2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_AIRC2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_AIRC3" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_AIRC3" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_AKGDH" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_AKGDH" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_AKGt2rpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_AKGt2rpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_AKGtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_AKGtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ALAALAabcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ALAALAabcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ALAALAr" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ALAALAr" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ALAALAtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ALAALAtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ALAGLUE" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ALAGLUE" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ALAR" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ALAR" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ALATA_D2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ALATA_D2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ALATA_L" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ALATA_L" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ALATA_L2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ALATA_L2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ALATRS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ALATRS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ALAabcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ALAabcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ALAt2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ALAt2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ALAt4pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ALAt4pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ALAtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ALAtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ALDD2y" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ALDD2y" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ALDD3y" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ALDD3y" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ALLTAMH" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ALLTAMH" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ALLTN" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ALLTN" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ALLTNt2rpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ALLTNt2rpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ALLTNtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ALLTNtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ALLtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ALLtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ALR2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ALR2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ALR4x" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ALR4x" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_AM3PA" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_AM3PA" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_AM4PA" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_AM4PA" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_AM4PCP" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_AM4PCP" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_AMALT1" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_AMALT1" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_AMALT2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_AMALT2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_AMALT3" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_AMALT3" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_AMALT4" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_AMALT4" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_AMANAPEr" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_AMANAPEr" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_AMANK" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_AMANK" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_AMAOTr" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_AMAOTr" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_AMMQLT8" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_AMMQLT8" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_AMPMS2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_AMPMS2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_AMPN" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_AMPN" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_AMPTASECG" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_AMPTASECG" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_AMPTASEPG" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_AMPTASEPG" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_AMPtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_AMPtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ANHGMtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ANHGMtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ANHMK" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ANHMK" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ANPRT" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ANPRT" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ANS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ANS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_AOBUTDs" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_AOBUTDs" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_AOXSr" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_AOXSr" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_AP4AH" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_AP4AH" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_AP5AH" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_AP5AH" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_APRAUR" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_APRAUR" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ARAI" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ARAI" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ARBTNR1" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ARBTNR1" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ARBTNR2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ARBTNR2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ARBTNR3" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ARBTNR3" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ARBTNabcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ARBTNabcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ARBTNexs" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ARBTNexs" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ARBTNtex" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ARBTNtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ARBTNtonex" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ARBTNtonex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ARBTNtpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ARBTNtpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ARBt2rpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ARBt2rpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ARBt3ipp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ARBt3ipp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ARBtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ARBtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ARGAGMt7pp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ARGAGMt7pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ARGDC" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ARGDC" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ARGDCpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ARGDCpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ARGORNt7pp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ARGORNt7pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ARGSL" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ARGSL" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ARGSS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ARGSS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ARGTRS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ARGTRS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ARGabcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ARGabcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ARGt3pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ARGt3pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ARGtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ARGtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ASAD" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ASAD" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ASCBPL" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ASCBPL" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ASCBptspp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ASCBptspp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ASCBtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ASCBtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ASNN" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ASNN" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ASNNpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ASNNpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ASNS1" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ASNS1" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ASNS2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ASNS2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ASNTRS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ASNTRS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ASNabcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ASNabcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ASNt2rpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ASNt2rpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ASNtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ASNtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ASO3tex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ASO3tex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ASP1DC" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ASP1DC" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ASPCT" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ASPCT" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ASPK" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ASPK" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ASPO3" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ASPO3" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ASPO4" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ASPO4" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ASPO5" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ASPO5" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ASPO6" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ASPO6" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ASPT" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ASPT" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ASPTA" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ASPTA" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ASPTRS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ASPTRS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ASPabcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ASPabcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ASPt2_2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ASPt2_2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ASPt2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ASPt2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ASPtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ASPtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_AST" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_AST" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ATHRDHr" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ATHRDHr" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ATPHs" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ATPHs" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ATPM" fbc:operation="equal" fbc:value="8.39"/>
- <fbc:fluxBound fbc:reaction="R_ATPPRT" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ATPPRT" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ATPS4rpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ATPS4rpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_BALAt2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_BALAt2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_BALAtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_BALAtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_BPNT" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_BPNT" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_BSORx" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_BSORx" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_BSORy" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_BSORy" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_BTS4" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_BTS4" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_BUTSO3tex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_BUTSO3tex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_BUTtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_BUTtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CA2t3pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CA2t3pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CA2tex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_CA2tex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CADVtpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CADVtpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CAt6pp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_CAt6pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CBIAT" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_CBIAT" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CBItonex" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CBItonex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CBIuabcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CBIuabcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CBL1abcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CBL1abcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CBL1tonex" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CBL1tonex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CBPS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CBPS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CD2abcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CD2abcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CD2t3pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CD2t3pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CD2tex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_CD2tex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CD2tpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CD2tpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CDAPPA120" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CDAPPA120" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CDAPPA140" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CDAPPA140" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CDAPPA141" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CDAPPA141" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CDAPPA160" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CDAPPA160" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CDAPPA161" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CDAPPA161" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CDAPPA180" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CDAPPA180" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CDAPPA181" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CDAPPA181" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CDPMEK" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CDPMEK" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CFAS160E" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CFAS160E" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CFAS160G" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CFAS160G" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CFAS180E" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CFAS180E" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CFAS180G" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CFAS180G" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CGLYabcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CGLYabcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CGLYtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_CGLYtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CHLabcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CHLabcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CHLtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_CHLtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CHORS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CHORS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CHRPL" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CHRPL" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CITL" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CITL" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CITt7pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CITt7pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CITtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_CITtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ICITtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ICITtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ACONCtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ACONCtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CLIPAtex" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CLIPAtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CLPNH120pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CLPNH120pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CLPNH140pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CLPNH140pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CLPNH141pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CLPNH141pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CLPNH160pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CLPNH160pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CLPNH161pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CLPNH161pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CLPNH180pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CLPNH180pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CLPNH181pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CLPNH181pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CLPNS120pp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_CLPNS120pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CLPNS140pp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_CLPNS140pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CLPNS141pp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_CLPNS141pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CLPNS160pp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_CLPNS160pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CLPNS161pp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_CLPNS161pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CLPNS180pp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_CLPNS180pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CLPNS181pp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_CLPNS181pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CLt3_2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CLt3_2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CLtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_CLtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CMPN" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CMPN" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CMPtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_CMPtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CO2tex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_CO2tex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CO2tpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_CO2tpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_COBALT2abcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_COBALT2abcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_COBALT2t3pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_COBALT2t3pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_COBALT2tex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_COBALT2tex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_COBALT2tpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_COBALT2tpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_COLIPAabcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_COLIPAabcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_COLIPAtex" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_COLIPAtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CPGNR1" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CPGNR1" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CPGNR2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CPGNR2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CPGNR3" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CPGNR3" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CPGNUtex" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CPGNUtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CPGNUtpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CPGNUtpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CPGNabcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CPGNabcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CPGNexs" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CPGNexs" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CPGNtonex" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CPGNtonex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CPPPGO" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CPPPGO" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CPPPGO2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CPPPGO2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CRNBTCT" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_CRNBTCT" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CRNCAL2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CRNCAL2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CRNCAR" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_CRNCAR" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CRNCBCT" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_CRNCBCT" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CRNCDH" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_CRNCDH" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CRNDCAL2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CRNDCAL2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CRNDabcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CRNDabcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CRNDt2rpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_CRNDt2rpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CRNabcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CRNabcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CRNt2rpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_CRNt2rpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CRNt7pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CRNt7pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CRNt8pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CRNt8pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CRNtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_CRNtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CSNtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_CSNtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CTBTCAL2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CTBTCAL2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CTBTabcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CTBTabcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CTBTt2rpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_CTBTt2rpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CTPS2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CTPS2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CU1Opp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CU1Opp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CU1abcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CU1abcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_AU1abcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_AU1abcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CU2abcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CU2abcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CU2tex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_CU2tex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CU2tpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CU2tpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CUtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_CUtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CYANST" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CYANST" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CYANSTpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CYANSTpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CYANtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_CYANtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CYNTtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_CYNTtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CYSDS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CYSDS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CYSDtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_CYSDtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CYSS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CYSS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CYSSADS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CYSSADS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CYSTL" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CYSTL" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CYSTRS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CYSTRS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CYSabc2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CYSabc2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CYSabcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CYSabcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CYSIabcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CYSIabcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CYStex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_CYStex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CYSItex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_CYSItex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CYStpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CYStpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CYTBO3_4pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CYTBO3_4pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CYTD" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CYTD" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CYTDH" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CYTDH" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CYTDK2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CYTDK2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CYTDt2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CYTDt2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CYTDt2rpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_CYTDt2rpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CYTDtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_CYTDtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CYTK1" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_CYTK1" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CYTK2" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_CYTK2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DAAD" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DAAD" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DADA" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DADA" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DADK" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_DADK" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DADNt2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DADNt2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DADNtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_DADNtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DAGK120" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DAGK120" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DAGK140" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DAGK140" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DAGK141" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DAGK141" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DAGK160" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DAGK160" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DAGK161" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DAGK161" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DAGK180" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DAGK180" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DAGK181" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DAGK181" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DALAt2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DALAt2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DALAtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_DALAtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DAMPtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_DAMPtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DAPDC" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DAPDC" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DAPE" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_DAPE" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DAPabcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DAPabcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DAPtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_DAPtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DASYN120" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DASYN120" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DASYN140" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DASYN140" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DASYN141" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DASYN141" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DASYN160" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DASYN160" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DASYN161" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DASYN161" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DASYN180" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DASYN180" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DASYN181" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DASYN181" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DATPHs" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DATPHs" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DB4PS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DB4PS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DBTS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DBTS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DCAtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_DCAtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DCMPtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_DCMPtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DCTPD" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DCTPD" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DCYTD" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DCYTD" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DCYTt2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DCYTt2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DCYTtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_DCYTtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DDCAtexi" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DDCAtexi" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DDGALK" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DDGALK" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DDGLCNtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_DDGLCNtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DDGLK" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DDGLK" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DDPA" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DDPA" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DGK1" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_DGK1" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DGMPtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_DGMPtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DGSNt2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DGSNt2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DGSNtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_DGSNtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DHAD1" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DHAD1" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DHAD2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DHAD2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DHAtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_DHAtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DHAtpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_DHAtpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DHBD" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DHBD" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DHBS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DHBS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DHDPRy" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DHDPRy" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DHDPS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DHDPS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DHFR" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_DHFR" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DHFS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DHFS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DHNAOT4" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DHNAOT4" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DHNPA2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DHNPA2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DHORD2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DHORD2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DHORD5" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DHORD5" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DHORTS" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_DHORTS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DHPPDA2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DHPPDA2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DHPS2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DHPS2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DHPTDCs" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DHPTDCs" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DHQS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DHQS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DHQTi" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DHQTi" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DIMPtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_DIMPtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DINSt2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DINSt2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DINStex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_DINStex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DKGLCNR1" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DKGLCNR1" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DKGLCNR2x" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DKGLCNR2x" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DKGLCNR2y" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DKGLCNR2y" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DKMPPD" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DKMPPD" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DKMPPD3" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DKMPPD3" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DMATT" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DMATT" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DMPPS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DMPPS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DMQMT" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DMQMT" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DMSOtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_DMSOtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DMStex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_DMStex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DM_4HBA" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DM_4HBA" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DM_5DRIB" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DM_5DRIB" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DM_HMFURN" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DM_HMFURN" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DM_OXAM" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DM_OXAM" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DNMPPA" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DNMPPA" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DNTPPA" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DNTPPA" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DOGULNR" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DOGULNR" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DOPAtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_DOPAtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DPCOAK" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DPCOAK" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DRPA" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DRPA" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DSBAO1" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DSBAO1" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DSBAO2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DSBAO2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DSBCGT" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DSBCGT" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DSBDR" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DSBDR" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DSBGGT" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DSBGGT" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DSERDHr" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_DSERDHr" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DSERt2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DSERt2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DSERtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_DSERtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DTMPK" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_DTMPK" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DTMPtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_DTMPtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DUMPtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_DUMPtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DURIK1" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DURIK1" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DURIPP" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_DURIPP" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DURIt2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DURIt2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DURItex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_DURItex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DUTPDP" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DUTPDP" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DXPRIi" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DXPRIi" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DXPS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DXPS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DXYLK" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DXYLK" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_D_LACt2pp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_D_LACt2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_D_LACtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_D_LACtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_E4PD" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_E4PD" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EAR100x" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EAR100x" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EAR100y" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EAR100y" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EAR120x" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EAR120x" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EAR120y" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EAR120y" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EAR121x" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EAR121x" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EAR121y" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EAR121y" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EAR140x" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EAR140x" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EAR140y" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EAR140y" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EAR141x" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EAR141x" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EAR141y" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EAR141y" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EAR160x" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EAR160x" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EAR160y" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EAR160y" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EAR161x" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EAR161x" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EAR161y" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EAR161y" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EAR180x" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EAR180x" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EAR180y" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EAR180y" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EAR181x" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EAR181x" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EAR181y" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EAR181y" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EAR40x" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EAR40x" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EAR40y" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EAR40y" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EAR60x" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EAR60x" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EAR60y" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EAR60y" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EAR80x" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EAR80x" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EAR80y" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EAR80y" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ECA4COLIPAtex" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ECA4COLIPAtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ECA4OALpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ECA4OALpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ECAP1pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ECAP1pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ECAP2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ECAP2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ECAP3pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ECAP3pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ECAtpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ECAtpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ECOAH1" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ECOAH1" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ECOAH2" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ECOAH2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ECOAH3" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ECOAH3" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ECOAH4" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ECOAH4" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ECOAH5" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ECOAH5" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ECOAH6" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ECOAH6" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ECOAH7" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ECOAH7" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ECOAH8" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ECOAH8" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EDA" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EDA" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EDD" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EDD" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EDTXS1" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EDTXS1" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EDTXS2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EDTXS2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EDTXS3" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EDTXS3" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EDTXS4" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EDTXS4" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ENLIPAtex" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ENLIPAtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ENO" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ENO" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ENTCS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ENTCS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ETHAAL" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ETHAAL" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ETHAt2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ETHAt2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ETHAtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ETHAtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ETHSO3tex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ETHSO3tex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ETOHt2rpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ETOHt2rpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ETOHtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ETOHtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_chitob_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_chitob_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_pydxn_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_pydxn_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_pydx_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_pydx_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_12ppd__R_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_12ppd__R_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_12ppd__S_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_12ppd__S_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_14glucan_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_14glucan_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_15dap_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_15dap_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_23camp_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_23camp_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_23ccmp_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_23ccmp_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_23cgmp_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_23cgmp_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_23cump_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_23cump_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_23dappa_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_23dappa_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_26dap__M_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_26dap__M_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_2ddglcn_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_2ddglcn_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_34dhpac_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_34dhpac_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_3amp_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_3amp_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_3cmp_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_3cmp_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_3gmp_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_3gmp_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_3hcinnm_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_3hcinnm_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_3hpppn_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_3hpppn_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_3ump_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_3ump_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_4abut_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_4abut_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_4hoxpacd_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_4hoxpacd_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_5dglcn_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_5dglcn_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_LalaDgluMdapDala_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_LalaDgluMdapDala_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_LalaDgluMdap_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_LalaDgluMdap_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_ac_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_ac_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_acac_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_acac_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_acald_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_acald_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_acgal1p_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_acgal1p_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_acgal_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_acgal_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_acgam1p_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_acgam1p_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_acgam_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_acgam_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_acmana_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_acmana_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_acmum_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_acmum_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_acnam_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_acnam_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_acolipa_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_acolipa_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_acser_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_acser_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_ade_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_ade_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_adn_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_adn_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_adocbl_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_adocbl_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_ag_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_ag_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_agm_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_agm_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_akg_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_akg_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_ala__B_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_ala__B_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_ala__D_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_ala__D_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_ala__L_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_ala__L_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_alaala_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_alaala_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_all__D_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_all__D_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_alltn_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_alltn_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_amp_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_amp_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_anhgm_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_anhgm_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_arab__L_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_arab__L_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_arbtn_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_arbtn_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_arbtn__fe3_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_arbtn__fe3_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_arg__L_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_arg__L_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_ascb__L_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_ascb__L_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_asn__L_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_asn__L_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_aso3_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_aso3_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_asp__L_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_asp__L_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_but_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_but_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_butso3_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_butso3_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_ca2_e" fbc:operation="greaterEqual" fbc:value="-0.005"/>
- <fbc:fluxBound fbc:reaction="R_EX_ca2_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_cbi_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_cbi_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_cbl1_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_cbl1_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_cd2_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_cd2_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_cgly_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_cgly_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_chol_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_chol_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_cit_e" fbc:operation="greaterEqual" fbc:value="-0.0005"/>
- <fbc:fluxBound fbc:reaction="R_EX_cit_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_icit_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_icit_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_acon__C_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_acon__C_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_cl_e" fbc:operation="greaterEqual" fbc:value="-5.016"/>
- <fbc:fluxBound fbc:reaction="R_EX_cl_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_cmp_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_cmp_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_co2_e" fbc:operation="greaterEqual" fbc:value="-18.5"/>
- <fbc:fluxBound fbc:reaction="R_EX_co2_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_cobalt2_e" fbc:operation="greaterEqual" fbc:value="-0.005"/>
- <fbc:fluxBound fbc:reaction="R_EX_cobalt2_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_colipa_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_colipa_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_cpgn_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_cpgn_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_cpgn__un_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_cpgn__un_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_crn_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_crn_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_csn_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_csn_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_cu2_e" fbc:operation="greaterEqual" fbc:value="-0.005"/>
- <fbc:fluxBound fbc:reaction="R_EX_cu2_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_cu_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_cu_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_cyan_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_cyan_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_cynt_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_cynt_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_cys__D_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_cys__D_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_cys__L_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_cys__L_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_cysi__L_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_cysi__L_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_cytd_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_cytd_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_dad__2_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_dad__2_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_damp_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_damp_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_dca_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_dca_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_dcmp_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_dcmp_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_dcyt_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_dcyt_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_ddca_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_ddca_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_dgmp_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_dgmp_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_dgsn_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_dgsn_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_dha_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_dha_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_dimp_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_dimp_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_din_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_din_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_dms_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_dms_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_dmso_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_dmso_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_dopa_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_dopa_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_dtmp_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_dtmp_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_dump_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_dump_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_duri_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_duri_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_eca4colipa_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_eca4colipa_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_enlipa_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_enlipa_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_enter_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_enter_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_etha_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_etha_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_ethso3_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_ethso3_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_etoh_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_etoh_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_f6p_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_f6p_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_fald_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_fald_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_fe2_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_fe2_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_fe3_e" fbc:operation="greaterEqual" fbc:value="-0.005"/>
- <fbc:fluxBound fbc:reaction="R_EX_fe3_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_fe3dcit_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_fe3dcit_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_fe3dhbzs_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_fe3dhbzs_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_fe3hox_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_fe3hox_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_fe3hox__un_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_fe3hox__un_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_fecrm_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_fecrm_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_fecrm__un_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_fecrm__un_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_feenter_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_feenter_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_feoxam_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_feoxam_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_feoxam__un_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_feoxam__un_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_for_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_for_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_fru_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_fru_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_frulys_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_frulys_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_fruur_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_fruur_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_fuc__L_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_fuc__L_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_fum_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_fum_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_g1p_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_g1p_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_g3pc_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_g3pc_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_g3pe_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_g3pe_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_g3pg_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_g3pg_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_g3pi_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_g3pi_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_g3ps_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_g3ps_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_g6p_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_g6p_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_gal1p_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_gal1p_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_gal__bD_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_gal__bD_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_gal_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_gal_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_galct__D_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_galct__D_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_galctn__D_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_galctn__D_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_galctn__L_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_galctn__L_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_galt_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_galt_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_galur_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_galur_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_gam6p_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_gam6p_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_gam_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_gam_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_gbbtn_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_gbbtn_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_gdp_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_gdp_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_glc__D_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_glc__D_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_glcn_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_glcn_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_glcr_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_glcr_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_glcur1p_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_glcur1p_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_glcur_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_glcur_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_gln__L_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_gln__L_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_glu__L_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_glu__L_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_gly_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_gly_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_glyald_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_glyald_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_glyb_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_glyb_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_glyc2p_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_glyc2p_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_glyc3p_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_glyc3p_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_glyc__R_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_glyc__R_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_glyc_e" fbc:operation="greaterEqual" fbc:value="-41.0468020414812"/>
- <fbc:fluxBound fbc:reaction="R_EX_glyc_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_glyclt_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_glyclt_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_gmp_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_gmp_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_gsn_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_gsn_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_gthox_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_gthox_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_gthrd_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_gthrd_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_gtp_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_gtp_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_gua_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_gua_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_h2_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_h2_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_h2o2_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_h2o2_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_h2o_e" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_h2o_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_h2s_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_h2s_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_h_e" fbc:operation="greaterEqual" fbc:value="-100"/>
- <fbc:fluxBound fbc:reaction="R_EX_h_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_hacolipa_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_hacolipa_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_halipa_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_halipa_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_hdca_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_hdca_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_hdcea_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_hdcea_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_hg2_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_hg2_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_his__L_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_his__L_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_hom__L_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_hom__L_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_hxa_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_hxa_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_hxan_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_hxan_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_idon__L_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_idon__L_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_ile__L_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_ile__L_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_imp_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_imp_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_indole_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_indole_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_inost_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_inost_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_ins_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_ins_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_isetac_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_isetac_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_k_e" fbc:operation="greaterEqual" fbc:value="-6"/>
- <fbc:fluxBound fbc:reaction="R_EX_k_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_kdo2lipid4_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_kdo2lipid4_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_lac__D_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_lac__D_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_lac__L_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_lac__L_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_lcts_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_lcts_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_leu__L_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_leu__L_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_lipa__cold_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_lipa__cold_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_lipa_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_lipa_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_lys__L_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_lys__L_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_lyx__L_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_lyx__L_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_mal__D_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_mal__D_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_mal__L_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_mal__L_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_malt_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_malt_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_malthx_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_malthx_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_maltpt_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_maltpt_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_malttr_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_malttr_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_maltttr_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_maltttr_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_man6p_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_man6p_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_man_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_man_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_manglyc_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_manglyc_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_melib_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_melib_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_met__D_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_met__D_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_met__L_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_met__L_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_metsox__R__L_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_metsox__R__L_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_metsox__S__L_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_metsox__S__L_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_mg2_e" fbc:operation="greaterEqual" fbc:value="-0.008"/>
- <fbc:fluxBound fbc:reaction="R_EX_mg2_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_minohp_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_minohp_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_mmet_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_mmet_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_mn2_e" fbc:operation="greaterEqual" fbc:value="-0.005"/>
- <fbc:fluxBound fbc:reaction="R_EX_mn2_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_mnl_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_mnl_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_mobd_e" fbc:operation="greaterEqual" fbc:value="-0.005"/>
- <fbc:fluxBound fbc:reaction="R_EX_mobd_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_mso3_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_mso3_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_n2o_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_n2o_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_na1_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_na1_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_nac_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_nac_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_nh4_e" fbc:operation="greaterEqual" fbc:value="-15"/>
- <fbc:fluxBound fbc:reaction="R_EX_nh4_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_ni2_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_ni2_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_nmn_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_nmn_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_no2_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_no2_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_no3_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_no3_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_no_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_no_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_o2_e" fbc:operation="greaterEqual" fbc:value="-18.5"/>
- <fbc:fluxBound fbc:reaction="R_EX_o2_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_o2s_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_o2s_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_ocdca_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_ocdca_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_ocdcea_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_ocdcea_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_octa_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_octa_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_orn_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_orn_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_orot_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_orot_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_oaa_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_oaa_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_pacald_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_pacald_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_peamn_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_peamn_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_phe__L_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_phe__L_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_pheme_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_pheme_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_pi_e" fbc:operation="greaterEqual" fbc:value="-0.337"/>
- <fbc:fluxBound fbc:reaction="R_EX_pi_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_pnto__R_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_pnto__R_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_ppa_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_ppa_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_ppal_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_ppal_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_pppn_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_pppn_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_ppt_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_ppt_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_pro__L_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_pro__L_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_progly_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_progly_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_psclys_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_psclys_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_pser__L_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_pser__L_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_ptrc_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_ptrc_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_pyr_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_pyr_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_r5p_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_r5p_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_rib__D_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_rib__D_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_rmn_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_rmn_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_sbt__D_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_sbt__D_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_ser__D_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_ser__D_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_ser__L_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_ser__L_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_skm_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_skm_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_so2_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_so2_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_so3_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_so3_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_so4_e" fbc:operation="greaterEqual" fbc:value="-1"/>
- <fbc:fluxBound fbc:reaction="R_EX_so4_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_spmd_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_spmd_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_succ_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_succ_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_sucr_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_sucr_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_sulfac_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_sulfac_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_tartr__L_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_tartr__L_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_taur_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_taur_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_tcynt_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_tcynt_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_thm_e" fbc:operation="greaterEqual" fbc:value="-2.96498354434133e-08"/>
- <fbc:fluxBound fbc:reaction="R_EX_thm_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_thr__L_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_thr__L_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_thrp_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_thrp_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_thym_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_thym_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_thymd_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_thymd_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_tma_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_tma_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_tmao_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_tmao_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_tre_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_tre_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_trp__L_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_trp__L_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_tsul_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_tsul_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_ttdca_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_ttdca_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_ttdcea_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_ttdcea_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_tungs_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_tungs_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_tym_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_tym_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_tyr__L_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_tyr__L_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_tyrp_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_tyrp_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_uacgam_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_uacgam_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_udpacgal_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_udpacgal_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_udpg_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_udpg_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_udpgal_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_udpgal_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_udpglcur_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_udpglcur_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_ump_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_ump_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_ura_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_ura_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_urea_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_urea_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_uri_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_uri_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_val__L_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_val__L_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_xan_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_xan_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_xmp_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_xmp_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_xtsn_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_xtsn_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_xyl__D_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_xyl__D_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_xylu__L_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_xylu__L_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_zn2_e" fbc:operation="greaterEqual" fbc:value="-0.005"/>
- <fbc:fluxBound fbc:reaction="R_EX_zn2_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_Ec_biomass_iAF1260_core_59p81M" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_Ec_biomass_iAF1260_core_59p81M" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_F6PA" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_F6PA" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_F6PP" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_F6PP" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_F6Pt6_2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_F6Pt6_2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_F6Ptex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_F6Ptex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FA100ACPHi" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FA100ACPHi" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FA120ACPHi" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FA120ACPHi" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FA140ACPHi" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FA140ACPHi" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FA141ACPHi" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FA141ACPHi" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FA160ACPHi" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FA160ACPHi" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FA161ACPHi" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FA161ACPHi" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FA80ACPHi" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FA80ACPHi" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FACOAE100" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FACOAE100" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FACOAE120" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FACOAE120" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FACOAE140" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FACOAE140" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FACOAE141" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FACOAE141" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FACOAE160" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FACOAE160" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FACOAE161" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FACOAE161" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FACOAE180" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FACOAE180" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FACOAE181" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FACOAE181" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FACOAE60" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FACOAE60" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FACOAE80" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FACOAE80" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FACOAL100t2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FACOAL100t2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FACOAL120t2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FACOAL120t2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FACOAL140t2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FACOAL140t2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FACOAL141t2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FACOAL141t2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FACOAL160t2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FACOAL160t2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FACOAL161t2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FACOAL161t2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FACOAL180t2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FACOAL180t2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FACOAL181t2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FACOAL181t2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FACOAL60t2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FACOAL60t2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FACOAL80t2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FACOAL80t2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FADRx" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FADRx" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FADRx2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FADRx2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FALDtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_FALDtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FALDtpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_FALDtpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FALGTHLs" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_FALGTHLs" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FBA" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_FBA" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FBP" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FBP" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FCI" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_FCI" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FCLK" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FCLK" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FCLPA" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_FCLPA" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FCLT" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FCLT" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FDH4pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FDH4pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FDH5pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FDH5pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FE2t2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FE2t2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FE2tex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_FE2tex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FE2tpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FE2tpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FE3DHBZR" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FE3DHBZR" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FE3DHBZSabcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FE3DHBZSabcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FE3DHBZStonex" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FE3DHBZStonex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FE3HOXR1" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FE3HOXR1" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FE3HOXR2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FE3HOXR2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FE3HOXR3" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FE3HOXR3" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FE3HOXUtex" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FE3HOXUtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FE3HOXUtpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FE3HOXUtpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FE3HOXexs" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FE3HOXexs" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FE3HOXtonex" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FE3HOXtonex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FE3Ri" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FE3Ri" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FE3tex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_FE3tex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FECRMR1" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FECRMR1" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FECRMR2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FECRMR2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FECRMR3" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FECRMR3" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FECRMUtex" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FECRMUtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FECRMUtpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FECRMUtpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FECRMabcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FECRMabcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FECRMexs" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FECRMexs" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FECRMtonex" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FECRMtonex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FEENTERabcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FEENTERabcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FEENTERexs" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FEENTERexs" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FEENTERtonex" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FEENTERtonex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FEENTERtpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FEENTERtpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FEOXAMUtex" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FEOXAMUtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FEOXAMUtpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FEOXAMUtpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FEOXAMabcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FEOXAMabcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FEOXAMexs" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FEOXAMexs" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FEOXAMtonex" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FEOXAMtonex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FEROpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FEROpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FHL" fbc:operation="equal" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FLDR" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FLDR" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FLVR" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FLVR" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FLVRx" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FLVRx" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FMETTRS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FMETTRS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FMNAT" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FMNAT" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FMNRx" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FMNRx" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FMNRx2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FMNRx2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FORt2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FORt2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FORtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_FORtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FORtppi" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FORtppi" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FRD2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FRD2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FRD3" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FRD3" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FRUK" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FRUK" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FRULYStex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_FRULYStex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FRUURtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_FRUURtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FRUpts2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FRUpts2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FRUptspp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FRUptspp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FRUtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_FRUtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FTHFD" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FTHFD" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FUCtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_FUCtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FUCtpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_FUCtpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FUM" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_FUM" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FUMt2_2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FUMt2_2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FUMtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_FUMtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_G1PACT" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_G1PACT" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_G1PPpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_G1PPpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_G1PTT" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_G1PTT" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_G1Ptex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_G1Ptex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_G1SAT" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_G1SAT" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_G2PPpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_G2PPpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_G3PAT120" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_G3PAT120" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_G3PAT140" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_G3PAT140" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_G3PAT141" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_G3PAT141" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_G3PAT160" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_G3PAT160" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_G3PAT161" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_G3PAT161" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_G3PAT180" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_G3PAT180" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_G3PAT181" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_G3PAT181" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_G3PCabcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_G3PCabcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_G3PCtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_G3PCtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_G3PD2" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_G3PD2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_G3PD5" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_G3PD5" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_G3PD6" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_G3PD6" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_G3PD7" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_G3PD7" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_G3PEabcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_G3PEabcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_G3PEtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_G3PEtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_G3PGabcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_G3PGabcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_G3PGtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_G3PGtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_G3PIabcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_G3PIabcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_G3PItex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_G3PItex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_G3PSabcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_G3PSabcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_G3PStex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_G3PStex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_G3PT" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_G3PT" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_G5SADs" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_G5SADs" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_G5SD" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_G5SD" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_G6PDA" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_G6PDA" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_G6PDH2r" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_G6PDH2r" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_G6PP" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_G6PP" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_G6Pt6_2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_G6Pt6_2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_G6Ptex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_G6Ptex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GAL1PPpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GAL1PPpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GAL1Ptex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_GAL1Ptex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GALBDtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_GALBDtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GALCTNLtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_GALCTNLtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GALCTNt2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GALCTNt2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GALCTNtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_GALCTNtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GALCTt2rpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_GALCTt2rpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GALCTtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_GALCTtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GALKr" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GALKr" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GALM2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GALM2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GALS3" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GALS3" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GALT1" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GALT1" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GALTtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_GALTtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GALURt2rpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_GALURt2rpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GALURtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_GALURtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GALUi" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GALUi" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GALabcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GALabcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GALt2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GALt2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GALtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_GALtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GAM6Pt6_2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GAM6Pt6_2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GAMAN6Ptex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_GAMAN6Ptex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GAMptspp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GAMptspp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GAMtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_GAMtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GAPD" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_GAPD" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GARFT" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_GARFT" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GART" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GART" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GBBTNtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_GBBTNtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GDMANE" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GDMANE" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GDPDPK" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GDPDPK" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GDPMNH" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GDPMNH" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GDPMNP" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GDPMNP" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GDPtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_GDPtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GF6PTA" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GF6PTA" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GHMT2r" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_GHMT2r" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GK1" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_GK1" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GLBRAN2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GLBRAN2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GLCATr" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_GLCATr" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GLCDpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GLCDpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GLCNt2rpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_GLCNt2rpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GLCNtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_GLCNtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GLCP" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GLCP" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GLCP2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GLCP2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GLCRAL" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GLCRAL" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GLCRD" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GLCRD" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GLCRt2rpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_GLCRt2rpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GLCRtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_GLCRtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GLCS1" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GLCS1" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GLCTR1" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GLCTR1" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GLCTR2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GLCTR2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GLCTR3" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GLCTR3" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GLCUR1Ptex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_GLCUR1Ptex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GLCURt2rpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_GLCURt2rpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GLCURtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_GLCURtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GLCabcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GLCabcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GLCptspp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GLCptspp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GLCt2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GLCt2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GLCtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_GLCtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GLCtexi" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GLCtexi" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GLDBRAN2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GLDBRAN2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GLGC" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GLGC" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GLNS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GLNS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GLNTRS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GLNTRS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GLNabcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GLNabcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GLNtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_GLNtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GLU5K" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GLU5K" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GLUCYS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GLUCYS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GLUDy" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_GLUDy" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GLUN" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GLUN" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GLUNpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GLUNpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GLUPRT" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GLUPRT" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GLUR" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_GLUR" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GLUSy" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GLUSy" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GLUTRR" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GLUTRR" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GLUTRS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GLUTRS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GLUabcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GLUabcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GLUt2rpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_GLUt2rpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GLUt4pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GLUt4pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GLUtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_GLUtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GLXCL" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GLXCL" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GLYALDtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_GLYALDtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GLYALDtpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_GLYALDtpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GLYAT" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_GLYAT" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GLYBabcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GLYBabcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GLYBtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_GLYBtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GLYC2Ptex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_GLYC2Ptex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GLYC3Pabcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GLYC3Pabcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GLYC3Pt6pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GLYC3Pt6pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GLYC3Ptex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_GLYC3Ptex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GLYCAt2rpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_GLYCAt2rpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GLYCAtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_GLYCAtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GLYCDx" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GLYCDx" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GLYCK" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GLYCK" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GLYCK2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GLYCK2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GLYCL" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GLYCL" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GLYCLTDx" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GLYCLTDx" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GLYCLTDy" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GLYCLTDy" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GLYCLTt2rpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_GLYCLTt2rpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GLYCLTt4pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GLYCLTt4pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GLYCLTtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_GLYCLTtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GLYCTO2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GLYCTO2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GLYCTO3" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GLYCTO3" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GLYCTO4" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GLYCTO4" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GLYCtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_GLYCtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GLYCtpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_GLYCtpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GLYK" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GLYK" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GLYOX" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GLYOX" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GLYOX3" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GLYOX3" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GLYTRS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GLYTRS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GLYt2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GLYt2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GLYtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_GLYtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GMAND" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GMAND" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GMHEPAT" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GMHEPAT" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GMHEPK" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GMHEPK" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GMHEPPA" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GMHEPPA" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GMPR" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GMPR" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GMPS2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GMPS2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GMPtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_GMPtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GND" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GND" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GNK" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GNK" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GOFUCR" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GOFUCR" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GPDDA1" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GPDDA1" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GPDDA1pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GPDDA1pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GPDDA2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GPDDA2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GPDDA2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GPDDA2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GPDDA3" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GPDDA3" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GPDDA3pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GPDDA3pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GPDDA4" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GPDDA4" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GPDDA4pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GPDDA4pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GPDDA5" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GPDDA5" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GPDDA5pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GPDDA5pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GRTT" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GRTT" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GRXR" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GRXR" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GSNK" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GSNK" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GSNt2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GSNt2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GSNtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_GSNtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GSPMDA" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GSPMDA" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GSPMDS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GSPMDS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GTHOXtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_GTHOXtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GTHOr" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_GTHOr" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GTHRDHpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GTHRDHpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GTHRDabc2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GTHRDabc2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GTHRDabcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GTHRDabcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GTHRDtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_GTHRDtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GTHS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GTHS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GTPCI" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GTPCI" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GTPCII2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GTPCII2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GTPDPDP" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GTPDPDP" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GTPDPK" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GTPDPK" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GTPHs" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GTPHs" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GTPtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_GTPtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GUAPRT" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GUAPRT" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GUAt2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GUAt2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GUAtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_GUAtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GUAtpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_GUAtpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GUR1PPpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GUR1PPpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_H2O2tex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_H2O2tex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_H2Otex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_H2Otex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_H2Otpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_H2Otpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_H2SO" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_H2SO" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_H2St1pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_H2St1pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_H2Stex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_H2Stex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_H2tex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_H2tex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_H2tpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_H2tpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_HACD1i" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_HACD1i" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_HACD2i" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_HACD2i" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_HACD3i" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_HACD3i" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_HACD4i" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_HACD4i" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_HACD5i" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_HACD5i" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_HACD6i" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_HACD6i" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_HACD7i" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_HACD7i" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_HACD8i" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_HACD8i" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_HBZOPT" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_HBZOPT" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_HCINNMtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_HCINNMtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_HCO3E" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_HCO3E" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_HDCAtexi" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_HDCAtexi" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_HDCEAtexi" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_HDCEAtexi" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_HDCOAI" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_HDCOAI" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_HEMEOS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_HEMEOS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_HEPK1" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_HEPK1" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_HEPK2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_HEPK2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_HEPT1" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_HEPT1" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_HEPT2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_HEPT2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_HEPT3" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_HEPT3" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_HEPT4" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_HEPT4" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_HETZK" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_HETZK" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_HEX1" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_HEX1" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_HEX4" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_HEX4" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_HEX7" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_HEX7" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_HG2abcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_HG2abcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_HG2tex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_HG2tex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_HISTD" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_HISTD" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_HISTP" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_HISTP" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_HISTRS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_HISTRS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_HISabcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_HISabcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_HISt2rpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_HISt2rpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_HIStex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_HIStex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_HMBS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_HMBS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_HMPK1" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_HMPK1" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_HOMt2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_HOMt2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_HOMtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_HOMtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_HPPK2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_HPPK2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_HPPPNtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_HPPPNtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_HPYRI" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_HPYRI" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_HPYRRx" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_HPYRRx" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_HPYRRy" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_HPYRRy" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_HSDy" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_HSDy" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_HSK" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_HSK" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_HSST" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_HSST" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_HSTPT" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_HSTPT" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_HXAtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_HXAtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_HXPRT" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_HXPRT" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_HYPOE" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_HYPOE" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_HYXNtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_HYXNtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_HYXNtpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_HYXNtpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_Htex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_Htex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ICDHyr" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ICDHyr" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ICHORS" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ICHORS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ICHORSi" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ICHORSi" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ICHORT" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ICHORT" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ICL" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ICL" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_IDOND" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_IDOND" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_IDOND2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_IDOND2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_IDONt2rpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_IDONt2rpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_IDONtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_IDONtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_IG3PS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_IG3PS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_IGPDH" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_IGPDH" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_IGPS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_IGPS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ILETA" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ILETA" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ILETRS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ILETRS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ILEabcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ILEabcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ILEt2rpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ILEt2rpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ILEtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ILEtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_IMPC" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_IMPC" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_IMPD" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_IMPD" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_IMPtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_IMPtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_INDOLEt2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_INDOLEt2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_INDOLEt2rpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_INDOLEt2rpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_INDOLEtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_INDOLEtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_INSH" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_INSH" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_INSK" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_INSK" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_INSTtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_INSTtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_INSt2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_INSt2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_INSt2rpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_INSt2rpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_INStex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_INStex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_IPDDI" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_IPDDI" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_IPDPS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_IPDPS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_IPMD" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_IPMD" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_IPPMIa" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_IPPMIa" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_IPPMIb" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_IPPMIb" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_IPPS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_IPPS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ISETACtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ISETACtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_K2L4Aabcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_K2L4Aabcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_K2L4Atex" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_K2L4Atex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_KARA1" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_KARA1" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_KARA2" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_KARA2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_KAS14" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_KAS14" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_KAS15" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_KAS15" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_KAT1" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_KAT1" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_KAT2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_KAT2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_KAT3" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_KAT3" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_KAT4" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_KAT4" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_KAT5" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_KAT5" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_KAT6" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_KAT6" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_KAT7" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_KAT7" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_KAT8" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_KAT8" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_KDOCT2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_KDOCT2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_KDOPP" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_KDOPP" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_KDOPS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_KDOPS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_KG6PDC" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_KG6PDC" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_Kabcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_Kabcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_Kt2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_Kt2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_Kt3pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_Kt3pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_Ktex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_Ktex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LA4NTpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_LA4NTpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LADGMDH" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_LADGMDH" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LALDO2x" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_LALDO2x" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LALGP" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_LALGP" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LCARR" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_LCARR" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LCARS" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_LCARS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LCTStex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_LCTStex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LDH_D" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_LDH_D" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LDH_D2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_LDH_D2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LEUTAi" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_LEUTAi" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LEUTRS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_LEUTRS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LEUabcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_LEUabcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LEUt2rpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_LEUt2rpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LEUtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_LEUtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LGTHL" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_LGTHL" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LIPACabcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_LIPACabcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LIPAabcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_LIPAabcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LIPAtex" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_LIPAtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LPADSS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_LPADSS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL1A120pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL1A120pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL1A140pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL1A140pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL1A141pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL1A141pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL1A160pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL1A160pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL1A161pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL1A161pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL1A180pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL1A180pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL1A181pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL1A181pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL1E120pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL1E120pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL1E140pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL1E140pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL1E141pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL1E141pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL1E160pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL1E160pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL1E161pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL1E161pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL1E180pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL1E180pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL1E181pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL1E181pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL1G120pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL1G120pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL1G140pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL1G140pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL1G141pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL1G141pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL1G160pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL1G160pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL1G161pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL1G161pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL1G180pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL1G180pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL1G181pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL1G181pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL2A120" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL2A120" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL2A140" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL2A140" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL2A141" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL2A141" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL2A160" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL2A160" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL2A161" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL2A161" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL2A180" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL2A180" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL2A181" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL2A181" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL2ATE120" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL2ATE120" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL2ATE140" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL2ATE140" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL2ATE141" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL2ATE141" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL2ATE160" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL2ATE160" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL2ATE161" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL2ATE161" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL2ATE180" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL2ATE180" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL2ATE181" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL2ATE181" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL2ATG120" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL2ATG120" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL2ATG140" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL2ATG140" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL2ATG141" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL2ATG141" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL2ATG160" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL2ATG160" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL2ATG161" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL2ATG161" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL2ATG180" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL2ATG180" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL2ATG181" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL2ATG181" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL2E120" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL2E120" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL2E140" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL2E140" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL2E141" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL2E141" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL2E160" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL2E160" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL2E161" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL2E161" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL2E180" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL2E180" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL2E181" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL2E181" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL2G120" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL2G120" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL2G140" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL2G140" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL2G141" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL2G141" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL2G160" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL2G160" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL2G161" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL2G161" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL2G180" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL2G180" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL2G181" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_LPLIPAL2G181" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LSERDHr" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_LSERDHr" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LYSDC" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_LYSDC" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LYSTRS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_LYSTRS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LYSabcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_LYSabcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LYSt2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_LYSt2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LYSt3pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_LYSt3pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LYStex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_LYStex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LYXI" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_LYXI" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LYXt2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_LYXt2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LYXtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_LYXtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_L_LACD2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_L_LACD2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_L_LACD3" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_L_LACD3" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_L_LACt2rpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_L_LACt2rpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_L_LACtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_L_LACtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_M1PD" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_M1PD" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MACPD" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_MACPD" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MALDt2_2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_MALDt2_2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MALDtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_MALDtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MALS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_MALS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MALTATr" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_MALTATr" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MALTHXabcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_MALTHXabcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MALTHXtexi" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_MALTHXtexi" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MALTPTabcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_MALTPTabcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MALTPTtexi" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_MALTPTtexi" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MALTTRabcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_MALTTRabcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MALTTRtexi" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_MALTTRtexi" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MALTTTRabcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_MALTTTRabcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MALTTTRtexi" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_MALTTTRtexi" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MALTabcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_MALTabcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MALTptspp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_MALTptspp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MALTtexi" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_MALTtexi" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MALt2_2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_MALt2_2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MALtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_MALtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MAN6PI" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_MAN6PI" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MAN6Pt6_2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_MAN6Pt6_2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MAN6Ptex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_MAN6Ptex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MANGLYCtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_MANGLYCtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MANptspp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_MANptspp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MANtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_MANtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MCITD" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_MCITD" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MCITL2" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_MCITL2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MCITS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_MCITS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MCOATA" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_MCOATA" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MCPST" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_MCPST" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MCTP1App" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_MCTP1App" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MCTP1Bpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_MCTP1Bpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MCTP2App" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_MCTP2App" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MDDCP1pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_MDDCP1pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MDDCP2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_MDDCP2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MDDCP3pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_MDDCP3pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MDDCP4pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_MDDCP4pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MDDCP5pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_MDDCP5pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MDDEP1pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_MDDEP1pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MDDEP2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_MDDEP2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MDDEP3pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_MDDEP3pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MDDEP4pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_MDDEP4pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MDH" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_MDH" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MDRPD" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_MDRPD" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ME1" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ME1" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ME2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ME2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MECDPDH2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_MECDPDH2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MECDPS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_MECDPS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MELIBt2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_MELIBt2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MELIBt3ipp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_MELIBt3ipp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MELIBtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_MELIBtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MEPCT" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_MEPCT" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_METAT" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_METAT" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_METDabcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_METDabcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_METDtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_METDtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_METOX1s" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_METOX1s" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_METOX2s" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_METOX2s" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_METS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_METS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_METSOX1abcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_METSOX1abcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_METSOX1tex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_METSOX1tex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_METSOX2abcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_METSOX2abcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_METSOX2tex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_METSOX2tex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_METSOXR1" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_METSOXR1" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_METSOXR2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_METSOXR2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_METTRS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_METTRS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_METabcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_METabcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_METtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_METtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MG2t3_2pp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_MG2t3_2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MG2tex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_MG2tex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MG2tpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_MG2tpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MGSA" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_MGSA" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MI1PP" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_MI1PP" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MICITD" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_MICITD" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MINOHPtexi" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_MINOHPtexi" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MLDCP1App" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_MLDCP1App" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MLDCP1Bpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_MLDCP1Bpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MLDCP2App" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_MLDCP2App" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MLDCP2Bpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_MLDCP2Bpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MLDCP3App" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_MLDCP3App" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MLDEP1pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_MLDEP1pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MLDEP2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_MLDEP2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MLTG1" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_MLTG1" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MLTG2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_MLTG2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MLTG3" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_MLTG3" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MLTG4" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_MLTG4" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MLTG5" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_MLTG5" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MLTGY1pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_MLTGY1pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MLTGY2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_MLTGY2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MLTGY3pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_MLTGY3pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MLTGY4pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_MLTGY4pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MLTP1" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_MLTP1" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MLTP2" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_MLTP2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MLTP3" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_MLTP3" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MME" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_MME" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MMETtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_MMETtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MN2t3pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_MN2t3pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MN2tpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_MN2tpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MN6PP" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_MN6PP" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MNLptspp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_MNLptspp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MNLtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_MNLtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MNt2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_MNt2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MNtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_MNtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MOAT" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_MOAT" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MOAT2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_MOAT2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MOAT3C" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_MOAT3C" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MOBDabcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_MOBDabcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MOBDtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_MOBDtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MOHMT" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_MOHMT" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MPTG" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_MPTG" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MPTG2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_MPTG2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MSO3tex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_MSO3tex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MTAN" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_MTAN" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MTHFC" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_MTHFC" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MTHFD" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_MTHFD" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MTHFR2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_MTHFR2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MTRI" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_MTRI" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MTRK" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_MTRK" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MTRPOX" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_MTRPOX" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_N2Otex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_N2Otex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_N2Otpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_N2Otpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NACODA" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NACODA" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NACtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_NACtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NACtpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NACtpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NADDP" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NADDP" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NADH10" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NADH10" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NADH16pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NADH16pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NADH17pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NADH17pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NADH18pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NADH18pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NADH5" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NADH5" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NADH9" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NADH9" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NADK" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NADK" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NADN" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NADN" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NADPHQR2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NADPHQR2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NADPHQR3" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NADPHQR3" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NADPHQR4" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NADPHQR4" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NADPPPS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NADPPPS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NADS1" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NADS1" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NADTRHD" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NADTRHD" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NAMNPP" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NAMNPP" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NAt3_1p5pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NAt3_1p5pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NAt3_2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NAt3_2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NAtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_NAtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NDPK1" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_NDPK1" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NDPK2" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_NDPK2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NDPK3" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_NDPK3" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NDPK4" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_NDPK4" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NDPK5" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_NDPK5" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NDPK6" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_NDPK6" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NDPK7" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_NDPK7" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NDPK8" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_NDPK8" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NH4tex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_NH4tex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NH4tpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_NH4tpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NHFRBO" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NHFRBO" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NI2abcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NI2abcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NI2t3pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NI2t3pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NI2tex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_NI2tex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NMNAT" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NMNAT" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NMNDA" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NMNDA" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NMNN" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NMNN" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NMNPtpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NMNPtpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NMNt7pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NMNt7pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NMNtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_NMNtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NNAM" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NNAM" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NNATr" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_NNATr" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NNDPR" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NNDPR" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NO2t2rpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_NO2t2rpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NO2tex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_NO2tex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NO3R1bpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NO3R1bpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NO3R1pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NO3R1pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NO3R2bpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NO3R2bpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NO3R2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NO3R2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NO3t7pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NO3t7pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NO3tex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_NO3tex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NODOx" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NODOx" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NODOy" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NODOy" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NOtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_NOtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NOtpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_NOtpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NPHS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NPHS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NTD1" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NTD1" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NTD10" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NTD10" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NTD10pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NTD10pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NTD11" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NTD11" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NTD11pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NTD11pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NTD12" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NTD12" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NTD12pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NTD12pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NTD1pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NTD1pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NTD2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NTD2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NTD2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NTD2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NTD3" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NTD3" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NTD3pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NTD3pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NTD4" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NTD4" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NTD4pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NTD4pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NTD5" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NTD5" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NTD5pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NTD5pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NTD6" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NTD6" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NTD6pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NTD6pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NTD7" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NTD7" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NTD7pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NTD7pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NTD8" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NTD8" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NTD8pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NTD8pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NTD9" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NTD9" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NTD9pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NTD9pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NTP1" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NTP1" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NTP10" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NTP10" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NTP11" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NTP11" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NTP12" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NTP12" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NTP3" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NTP3" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NTP5" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NTP5" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NTPP1" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NTPP1" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NTPP10" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NTPP10" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NTPP11" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NTPP11" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NTPP2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NTPP2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NTPP3" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NTPP3" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NTPP4" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NTPP4" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NTPP5" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NTPP5" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NTPP6" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NTPP6" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NTPP7" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NTPP7" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NTPP8" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NTPP8" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NTPP9" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NTPP9" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NTPTP1" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NTPTP1" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NTPTP2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NTPTP2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NTRIR2x" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NTRIR2x" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NTRIR3pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NTRIR3pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NTRIR4pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NTRIR4pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_O2Stex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_O2Stex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_O2tex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_O2tex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_O2tpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_O2tpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_OAADC" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_OAADC" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_OBTFL" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_OBTFL" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_OCDCAtexi" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_OCDCAtexi" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_OCDCEAtexi" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_OCDCEAtexi" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_OCTAtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_OCTAtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_OCTDPS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_OCTDPS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ODECOAI" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ODECOAI" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_OHPBAT" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_OHPBAT" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_OHPHM" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_OHPHM" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_OMBZLM" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_OMBZLM" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_OMCDC" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_OMCDC" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_OMMBLHX" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_OMMBLHX" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_OMMBLHX3" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_OMMBLHX3" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_OMPDC" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_OMPDC" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_OMPHHX" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_OMPHHX" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_OMPHHX3" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_OMPHHX3" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_OPHBDC" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_OPHBDC" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_OPHHX" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_OPHHX" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_OPHHX3" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_OPHHX3" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ORNDC" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ORNDC" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ORNabcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ORNabcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ORNtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ORNtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_OROTt2_2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_OROTt2_2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_OAAt2_2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_OAAt2_2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_OROTtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_OROTtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_OAAtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_OAAtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ORPT" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ORPT" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_OXAMTC" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_OXAMTC" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_OXGDC2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_OXGDC2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_P5CD" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_P5CD" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_P5CR" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_P5CR" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PA120abcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PA120abcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PA140abcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PA140abcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PA141abcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PA141abcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PA160abcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PA160abcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PA161abcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PA161abcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PA180abcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PA180abcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PA181abcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PA181abcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PACALDt2rpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_PACALDt2rpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PACALDtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_PACALDtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PANTS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PANTS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PAPA120" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PAPA120" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PAPA120pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PAPA120pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PAPA140" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PAPA140" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PAPA140pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PAPA140pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PAPA141" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PAPA141" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PAPA141pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PAPA141pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PAPA160" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PAPA160" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PAPA160pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PAPA160pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PAPA161" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PAPA161" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PAPA161pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PAPA161pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PAPA180" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PAPA180" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PAPA180pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PAPA180pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PAPA181" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PAPA181" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PAPA181pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PAPA181pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PAPPT3" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PAPPT3" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PAPSR" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PAPSR" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PAPSR2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PAPSR2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PDH" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PDH" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PDX5PO2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PDX5PO2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PDX5POi" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PDX5POi" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PDX5PS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PDX5PS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PDXPP" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PDXPP" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PE120abcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PE120abcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PE140abcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PE140abcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PE141abcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PE141abcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PE160abcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PE160abcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PE161abcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PE161abcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PE180abcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PE180abcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PE181abcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PE181abcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PEAMNtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_PEAMNtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PERD" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_PERD" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PETNT161pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PETNT161pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PETNT181pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PETNT181pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PFK" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PFK" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PFK_2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PFK_2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PFL" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PFL" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PG120abcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PG120abcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PG140abcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PG140abcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PG141abcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PG141abcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PG160abcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PG160abcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PG161abcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PG161abcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PG180abcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PG180abcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PG181abcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PG181abcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PGAMT" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_PGAMT" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PGCD" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PGCD" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PGI" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_PGI" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PGK" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_PGK" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PGL" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PGL" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PGLYCP" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PGLYCP" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PGM" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_PGM" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PGMT" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_PGMT" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PGP120abcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PGP120abcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PGP140abcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PGP140abcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PGP141abcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PGP141abcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PGP160abcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PGP160abcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PGP161abcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PGP161abcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PGP180abcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PGP180abcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PGP181abcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PGP181abcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PGPP120" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PGPP120" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PGPP120pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PGPP120pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PGPP140" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PGPP140" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PGPP140pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PGPP140pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PGPP141" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PGPP141" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PGPP141pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PGPP141pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PGPP160" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PGPP160" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PGPP160pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PGPP160pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PGPP161" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PGPP161" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PGPP161pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PGPP161pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PGPP180" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PGPP180" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PGPP180pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PGPP180pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PGPP181" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PGPP181" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PGPP181pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PGPP181pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PGSA120" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PGSA120" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PGSA140" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PGSA140" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PGSA141" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PGSA141" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PGSA160" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PGSA160" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PGSA161" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PGSA161" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PGSA180" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PGSA180" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PGSA181" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PGSA181" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PHEMEabcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PHEMEabcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PHEMEtiex" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PHEMEtiex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PHETA1" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_PHETA1" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PHETRS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PHETRS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PHEt2rpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_PHEt2rpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PHEtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_PHEtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PIt2rpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_PIt2rpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PItex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_PItex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PIuabcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PIuabcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PLIPA1A120pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PLIPA1A120pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PLIPA1A140pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PLIPA1A140pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PLIPA1A141pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PLIPA1A141pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PLIPA1A160pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PLIPA1A160pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PLIPA1A161pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PLIPA1A161pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PLIPA1A180pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PLIPA1A180pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PLIPA1A181pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PLIPA1A181pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PLIPA1E120pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PLIPA1E120pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PLIPA1E140pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PLIPA1E140pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PLIPA1E141pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PLIPA1E141pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PLIPA1E160pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PLIPA1E160pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PLIPA1E161pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PLIPA1E161pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PLIPA1E180pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PLIPA1E180pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PLIPA1E181pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PLIPA1E181pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PLIPA1G120pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PLIPA1G120pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PLIPA1G140pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PLIPA1G140pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PLIPA1G141pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PLIPA1G141pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PLIPA1G160pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PLIPA1G160pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PLIPA1G161pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PLIPA1G161pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PLIPA1G180pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PLIPA1G180pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PLIPA1G181pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PLIPA1G181pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PLIPA2A120pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PLIPA2A120pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PLIPA2A140pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PLIPA2A140pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PLIPA2A141pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PLIPA2A141pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PLIPA2A160pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PLIPA2A160pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PLIPA2A161pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PLIPA2A161pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PLIPA2A180pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PLIPA2A180pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PLIPA2A181pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PLIPA2A181pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PLIPA2E120pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PLIPA2E120pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PLIPA2E140pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PLIPA2E140pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PLIPA2E141pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PLIPA2E141pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PLIPA2E160pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PLIPA2E160pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PLIPA2E161pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PLIPA2E161pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PLIPA2E180pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PLIPA2E180pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PLIPA2E181pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PLIPA2E181pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PLIPA2G120pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PLIPA2G120pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PLIPA2G140pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PLIPA2G140pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PLIPA2G141pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PLIPA2G141pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PLIPA2G160pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PLIPA2G160pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PLIPA2G161pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PLIPA2G161pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PLIPA2G180pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PLIPA2G180pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PLIPA2G181pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PLIPA2G181pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PMDPHT" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PMDPHT" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PMPK" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PMPK" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PNTK" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PNTK" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PNTOt4pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PNTOt4pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PNTOtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_PNTOtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_POX" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_POX" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PPA" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PPA" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PPA2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PPA2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PPAKr" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_PPAKr" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PPALtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_PPALtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PPALtpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_PPALtpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PPAt4pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PPAt4pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PPAtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_PPAtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PPBNGS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PPBNGS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PPC" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PPC" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PPCDC" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PPCDC" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PPCK" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PPCK" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PPGPPDP" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PPGPPDP" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PPK2r" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_PPK2r" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PPKr" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PPKr" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PPM" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_PPM" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PPM2" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_PPM2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PPNCL2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PPNCL2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PPND" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PPND" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PPNDH" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PPNDH" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PPPGO" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PPPGO" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PPPGO3" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PPPGO3" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PPPNt2rpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_PPPNt2rpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PPPNtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_PPPNtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PPS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PPS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PPTtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_PPTtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PRAGSr" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_PRAGSr" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PRAIS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PRAIS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PRAIi" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PRAIi" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PRAMPC" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PRAMPC" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PRASCSi" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PRASCSi" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PRATPP" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PRATPP" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PRFGS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PRFGS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PRMICI" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_PRMICI" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PROD2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PROD2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PROGLYabcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PROGLYabcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PROGLYtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_PROGLYtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PROTRS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PROTRS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PROabcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PROabcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PROt4pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PROt4pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PROtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_PROtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PRPPS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PRPPS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PSCLYStex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_PSCLYStex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PSCVT" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_PSCVT" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PSD120" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PSD120" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PSD140" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PSD140" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PSD141" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PSD141" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PSD160" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PSD160" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PSD161" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PSD161" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PSD180" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PSD180" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PSD181" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PSD181" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PSERT" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PSERT" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PSERtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_PSERtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PSP_L" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PSP_L" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PSP_Lpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PSP_Lpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PSSA120" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PSSA120" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PSSA140" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PSSA140" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PSSA141" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PSSA141" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PSSA160" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PSSA160" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PSSA161" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PSSA161" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PSSA180" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PSSA180" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PSSA181" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PSSA181" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PTA2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PTA2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PTAr" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_PTAr" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PTHRpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PTHRpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PTPATi" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PTPATi" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PTRCORNt7pp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_PTRCORNt7pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PTRCTA" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PTRCTA" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PTRCabcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PTRCabcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PTRCt2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PTRCt2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PTRCtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_PTRCtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PUNP1" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_PUNP1" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PUNP2" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_PUNP2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PUNP3" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_PUNP3" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PUNP4" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_PUNP4" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PUNP5" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_PUNP5" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PUNP6" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_PUNP6" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PUNP7" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_PUNP7" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PYAM5PO" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PYAM5PO" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PYDAMK" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PYDAMK" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PYDXK" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PYDXK" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PYDXNK" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PYDXNK" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PYDXPP" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PYDXPP" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PYK" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PYK" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PYNP2r" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_PYNP2r" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PYRt2rpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_PYRt2rpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PYRtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_PYRtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_QMO2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_QMO2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_QMO3" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_QMO3" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_QULNS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_QULNS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_R5PP" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_R5PP" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_R5PPpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_R5PPpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_R5Ptex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_R5Ptex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_RBFK" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_RBFK" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_RBFSa" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_RBFSa" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_RBFSb" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_RBFSb" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_RBK" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_RBK" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_RBK_L1" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_RBK_L1" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_RBP4E" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_RBP4E" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_RHAT1" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_RHAT1" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_RHCCE" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_RHCCE" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_RIBabcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_RIBabcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_RIBtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_RIBtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_RMI" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_RMI" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_RMK" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_RMK" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_RMNtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_RMNtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_RMNtpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_RMNtpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_RMPA" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_RMPA" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_RNDR1" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_RNDR1" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_RNDR1b" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_RNDR1b" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_RNDR2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_RNDR2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_RNDR2b" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_RNDR2b" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_RNDR3" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_RNDR3" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_RNDR3b" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_RNDR3b" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_RNDR4" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_RNDR4" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_RNDR4b" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_RNDR4b" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_RNTR1c" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_RNTR1c" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_RNTR2c" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_RNTR2c" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_RNTR3c" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_RNTR3c" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_RNTR4c" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_RNTR4c" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_RPE" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_RPE" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_RPI" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_RPI" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_S7PI" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_S7PI" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_SADH" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_SADH" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_SADT2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_SADT2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_SBTPD" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_SBTPD" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_SBTptspp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_SBTptspp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_SBTtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_SBTtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_SDPDS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_SDPDS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_SDPTA" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_SDPTA" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_SELCYSS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_SELCYSS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_SELNPS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_SELNPS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_SERASr" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_SERASr" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_SERAT" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_SERAT" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_SERD_D" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_SERD_D" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_SERTRS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_SERTRS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_SERTRS2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_SERTRS2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_SERt2rpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_SERt2rpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_SERt4pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_SERt4pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_SERtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_SERtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_SFGTHi" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_SFGTHi" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_SGDS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_SGDS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_SGSAD" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_SGSAD" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_SHCHCS2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_SHCHCS2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_SHCHD2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_SHCHD2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_SHCHF" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_SHCHF" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_SHK3Dr" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_SHK3Dr" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_SHKK" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_SHKK" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_SKMtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_SKMtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_SO2tex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_SO2tex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_SO2tpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_SO2tpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_SO3tex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_SO3tex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_SO4tex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_SO4tex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_SOTA" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_SOTA" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_SPMDAT1" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_SPMDAT1" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_SPMDAT2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_SPMDAT2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_SPMDabcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_SPMDabcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_SPMDtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_SPMDtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_SPMS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_SPMS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_SPODM" fbc:operation="equal" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_SPODMpp" fbc:operation="equal" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_SSALx" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_SSALx" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_SSALy" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_SSALy" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_SUCBZL" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_SUCBZL" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_SUCBZS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_SUCBZS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_SUCCt2_2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_SUCCt2_2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_SUCCt3pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_SUCCt3pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_SUCCtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_SUCCtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_SUCDi" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_SUCDi" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_SUCOAS" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_SUCOAS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_SUCRtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_SUCRtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_SULFACtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_SULFACtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_SULRi" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_SULRi" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_SULabcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_SULabcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_T2DECAI" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_T2DECAI" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_TALA" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_TALA" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_TARTRtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_TARTRtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_TAURtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_TAURtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_TCYNTtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_TCYNTtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_TDECOAI" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_TDECOAI" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_TDP" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_TDP" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_TDPADGAT" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_TDPADGAT" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_TDPAGTA" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_TDPAGTA" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_TDPDRE" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_TDPDRE" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_TDPDRR" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_TDPDRR" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_TDPGDH" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_TDPGDH" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_TDSK" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_TDSK" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_TDSR1" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_TDSR1" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_TDSR2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_TDSR2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_THD2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_THD2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_THDPS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_THDPS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_THIORDXi" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_THIORDXi" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_THMDt2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_THMDt2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_THMDt2rpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_THMDt2rpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_THMDtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_THMDtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_THMabcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_THMabcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_THMtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_THMtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_THRA2i" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_THRA2i" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_THRAi" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_THRAi" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_THRD" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_THRD" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_THRD_L" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_THRD_L" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_THRPtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_THRPtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_THRS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_THRS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_THRTRS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_THRTRS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_THRabcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_THRabcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_THRt2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_THRt2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_THRt2rpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_THRt2rpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_THRt4pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_THRt4pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_THRtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_THRtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_THYMt3pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_THYMt3pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_THYMtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_THYMtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_TKT1" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_TKT1" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_TKT2" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_TKT2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_TMAOR1pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_TMAOR1pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_TMAOR2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_TMAOR2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_TMAOtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_TMAOtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_TMAtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_TMAtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_TMDK1" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_TMDK1" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_TMDPP" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_TMDPP" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_TMDS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_TMDS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_TMK" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_TMK" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_TMPK" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_TMPK" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_TMPPP" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_TMPPP" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_TPI" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_TPI" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_TPRDCOAS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_TPRDCOAS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_TRDR" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_TRDR" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_TRE6PH" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_TRE6PH" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_TRE6PP" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_TRE6PP" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_TRE6PS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_TRE6PS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_TREH" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_TREH" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_TREHpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_TREHpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_TREptspp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_TREptspp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_TREtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_TREtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_TRPS1" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_TRPS1" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_TRPS2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_TRPS2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_TRPS3" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_TRPS3" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_TRPTRS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_TRPTRS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_TRPt2rpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_TRPt2rpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_TRPtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_TRPtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_TRSARr" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_TRSARr" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_TSULabcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_TSULabcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_TSULtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_TSULtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_TTDCAtexi" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_TTDCAtexi" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_TTDCEAtexi" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_TTDCEAtexi" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_TUNGSabcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_TUNGSabcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_TUNGStex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_TUNGStex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_TYMtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_TYMtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_TYRPpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_TYRPpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_TYRPtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_TYRPtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_TYRTA" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_TYRTA" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_TYRTRS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_TYRTRS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_TYRt2rpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_TYRt2rpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_TYRtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_TYRtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_U23GAAT" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_U23GAAT" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_UAAGDS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_UAAGDS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_UACGALPpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_UACGALPpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_UACGAMPpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_UACGAMPpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_UACGAMtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_UACGAMtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_UACMAMO" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_UACMAMO" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_UAG2E" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_UAG2E" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_UAGAAT" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_UAGAAT" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_UAGCVT" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_UAGCVT" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_UAGDP" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_UAGDP" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_UAGPT3" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_UAGPT3" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_UAMAGS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_UAMAGS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_UAMAS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_UAMAS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_UAPGR" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_UAPGR" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_UDCPDP" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_UDCPDP" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_UDCPDPS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_UDCPDPS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_UDCPDPpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_UDCPDPpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_UDCPPtppi" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_UDCPPtppi" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_UDPACGALtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_UDPACGALtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_UDPG4E" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_UDPG4E" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_UDPGALPpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_UDPGALPpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_UDPGALtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_UDPGALtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_UDPGD" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_UDPGD" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_UDPGDC" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_UDPGDC" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_UDPGLCURtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_UDPGLCURtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_UDPGPpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_UDPGPpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_UDPGtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_UDPGtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_UDPKAAT" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_UDPKAAT" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_UGLCURPpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_UGLCURPpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_UGLT" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_UGLT" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_UGLYCH" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_UGLYCH" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_UGMDDS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_UGMDDS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_UHGADA" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_UHGADA" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ULA4NFT" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ULA4NFT" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ULA4Ntppi" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ULA4Ntppi" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_UM3PL" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_UM3PL" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_UM4PCP" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_UM4PCP" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_UM4PL" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_UM4PL" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_UMPK" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_UMPK" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_UMPtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_UMPtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_UNK3" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_UNK3" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_UPLA4FNF" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_UPLA4FNF" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_UPLA4FNT" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_UPLA4FNT" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_UPP3MT" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_UPP3MT" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_UPP3S" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_UPP3S" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_UPPRT" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_UPPRT" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_URAt2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_URAt2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_URAtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_URAtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_URDGLYCD" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_URDGLYCD" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_UREAtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_UREAtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_UREAtpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_UREAtpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_URIC" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_URIC" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_URIDK2r" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_URIDK2r" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_URIH" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_URIH" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_URIK2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_URIK2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_URIt2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_URIt2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_URIt2rpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_URIt2rpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_URItex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_URItex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_USHD" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_USHD" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_VALTA" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_VALTA" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_VALTRS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_VALTRS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_VALabcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_VALabcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_VALt2rpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_VALt2rpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_VALtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_VALtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_VPAMT" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_VPAMT" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_X5PL3E" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_X5PL3E" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_XANt2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_XANt2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_XANtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_XANtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_XANtpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_XANtpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_XMPtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_XMPtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_XPPT" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_XPPT" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_XTSNH" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_XTSNH" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_XTSNt2rpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_XTSNt2rpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_XTSNtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_XTSNtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_XYLI1" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_XYLI1" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_XYLI2" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_XYLI2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_XYLK" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_XYLK" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_XYLK2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_XYLK2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_XYLUt2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_XYLUt2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_XYLUtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_XYLUtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_XYLtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_XYLtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_XYLt2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_XYLt2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ZN2abcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ZN2abcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ZN2t3pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ZN2t3pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ZN2tpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ZN2tpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ZNabcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ZNabcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_Zn2tex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_Zn2tex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GCALDD" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GCALDD" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_THZPSN" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_THZPSN" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_AEP_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_AEP_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_AEPtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_AEPtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_AEPabcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_AEPabcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_AEPPYRTA" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_AEPPYRTA" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PALDH" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PALDH" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_4hoxpac_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_4hoxpac_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_4hoxpactex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_4hoxpactex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_4HOXPACt2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_4HOXPACt2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FLAVNADR" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FLAVNADR" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_4HOXPACMON" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_4HOXPACMON" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_4HOXPACMOF" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_4HOXPACMOF" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_34DHPACDO" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_34DHPACDO" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_4C2HM6SADH" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_4C2HM6SADH" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_5CM2HMUDI" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_5CM2HMUDI" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_5C2O3EDDC" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_5C2O3EDDC" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_2HH24DDH" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_2HH24DDH" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_4H2KPILY" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_4H2KPILY" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_12PPDS2tpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_12PPDS2tpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_12PPDRDH" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_12PPDRDH" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_12PPDSDH" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_12PPDSDH" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ALCDPPAL" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ALCDPPAL" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_COAPPALDH" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_COAPPALDH" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DSCLCOCH" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DSCLCOCH" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_Cobalt2abcppI" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_Cobalt2abcppI" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_Cobalt2abcppII" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_Cobalt2abcppII" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CODSCL2MT" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CODSCL2MT" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CODSCL3MT" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CODSCL3MT" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CODSCL4MT" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CODSCL4MT" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CODSCL5DA" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CODSCL5DA" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CODSCL5BMT" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CODSCL5BMT" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CODSCL6ARED" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CODSCL6ARED" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CODSCL6BMT" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CODSCL6BMT" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CODSCL7MTDC" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CODSCL7MTDC" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CODSCL8XI" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_CODSCL8XI" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_COBNAD" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_COBNAD" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_COB2NDARED" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_COB2NDARED" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_COB1NDAAT1" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_COB1NDAAT1" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_COB1NDAAT2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_COB1NDAAT2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ADCOBNSYN" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ADCOBNSYN" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LTHRK" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_LTHRK" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_THRPDC" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_THRPDC" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ADOCBIPS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ADOCBIPS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ADOCBLPS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ADOCBLPS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ADOCBLPP" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ADOCBLPP" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ADOCBIK" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ADOCBIK" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CBLAT" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_CBLAT" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_APPK" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_APPK" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_remnant1_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_remnant1_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_REMNANT1tex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_REMNANT1tex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_colipa20Oag_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_colipa20Oag_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_colipa20Oagtex" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_colipa20Oagtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_udcdp20OagLpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_udcdp20OagLpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_udcdpgalrmnmanabetpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_udcdpgalrmnmanabetpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_OGLT" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_OGLT" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ORLT" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ORLT" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_OMLT" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_OMLT" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_OALT" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_OALT" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MAN1PT2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_MAN1PT2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PMANM" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_PMANM" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_OAP1pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_OAP1pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_OAP2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_OAP2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_OAP3pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_OAP3pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_OAP4pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_OAP4pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_OAP5pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_OAP5pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_OAP6pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_OAP6pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_OAP7pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_OAP7pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_OAP8pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_OAP8pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_OAP9pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_OAP9pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_OAP10pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_OAP10pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_OAP11pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_OAP11pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_OAP12pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_OAP12pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_OAP13pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_OAP13pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_OAP14pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_OAP14pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_OAP15pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_OAP15pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_OAP16pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_OAP16pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_OAP17pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_OAP17pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_OAP18pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_OAP18pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_OAP19pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_OAP19pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_G1PCT" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_G1PCT" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CDPGLC46DH" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CDPGLC46DH" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CDP4D6DGLCRx" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CDP4D6DGLCRx" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CDPABEQS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CDPABEQS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_SALCHS4FEexs" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_SALCHS4FEexs" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_SALCHS4_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_SALCHS4_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_SALCHS4FE_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_SALCHS4FE_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_SALCHS4FEabcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_SALCHS4FEabcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_SALCHS4tex" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_SALCHS4tex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_SALCHS4abcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_SALCHS4abcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FEENTER2tpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FEENTER2tpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_SALCHSX_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_SALCHSX_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_SALCHSXtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_SALCHSXtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_SALCHSXtpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_SALCHSXtpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CSNt2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CSNt2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CSND" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CSND" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ALCD19" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ALCD19" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ALCD2x" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ALCD2x" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FALDH2" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_FALDH2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DPR" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DPR" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LIPAHT2ex" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_LIPAHT2ex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LIPAHTex" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_LIPAHTex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CYTBD2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CYTBD2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CYTBDpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CYTBDpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ACANTHAT" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ACANTHAT" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GLTPD" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_GLTPD" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_TGBPA" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_TGBPA" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GUI1" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_GUI1" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GUI2" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_GUI2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MNNH" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_MNNH" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MANAO" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_MANAO" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_OAADCS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_OAADCS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CITt4pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CITt4pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DDGLCNt2rpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_DDGLCNt2rpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CITt2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CITt2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CITtupp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CITtupp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ICITtupp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ICITtupp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ACONCtupp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ACONCtupp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NI2uabcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NI2uabcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GALTptspp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GALTptspp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_tag__D_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_tag__D_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_TAGtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_TAGtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_TAGptspp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_TAGptspp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_TAG1PK" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_TAG1PK" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FE2abcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FE2abcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MN2abcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_MN2abcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_TETDHpp1" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_TETDHpp1" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_TSULDHpp1" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_TSULDHpp1" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_TETDHpp2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_TETDHpp2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_TSULDHpp2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_TSULDHpp2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_TETDHpp3" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_TETDHpp3" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_TSULDHpp3" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_TSULDHpp3" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_SO3R" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_SO3R" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MG2uabcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_MG2uabcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_UPPDC1" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_UPPDC1" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_AIRSK" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_AIRSK" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_airs_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_airs_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_AIRStex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_AIRStex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_AIRStpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_AIRStpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_REMNANT1tpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_REMNANT1tpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ARGDA" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ARGDA" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_OCBT" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_OCBT" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CBMKr" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_CBMKr" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_3PGt6pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_3PGt6pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_2PGt6pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_2PGt6pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PEPt6pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PEPt6pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_pep_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_pep_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PEPtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_PEPtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_2pg_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_2pg_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_2PGtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_2PGtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_3pg_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_3pg_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_3PGtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_3PGtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_SERD_L" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_SERD_L" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_TARTD" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_TARTD" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_TARTRtpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_TARTRtpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NI2tpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NI2tpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CAT" fbc:operation="equal" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CHORM" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CHORM" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DAPAL" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DAPAL" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_UDPGALM" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_UDPGALM" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_HYD1pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_HYD1pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_HYD2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_HYD2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_HYD3pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_HYD3pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_tet_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_tet_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_TETtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_TETtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_foam_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_foam_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FOAMtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_FOAMtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_tartr__D_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_tartr__D_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_TARTRDtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_TARTRDtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_TARTRDtpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_TARTRDtpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GALCTD" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GALCTD" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_SHSL1" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_SHSL1" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ASPt2_3pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ASPt2_3pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_SUCFUMtpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_SUCFUMtpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_SUCCt2_3pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_SUCCt2_3pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FUMt2_3pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FUMt2_3pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MALt2_3pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_MALt2_3pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ALAALAD" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ALAALAD" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DMSOR1" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DMSOR1" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DMSOR2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DMSOR2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NAt3pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NAt3pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_4IZ5PPH" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_4IZ5PPH" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NFLGLNH" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NFLGLNH" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_4abz_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_4abz_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ABZtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ABZtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_feroxB_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_feroxB_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_feroxBfe_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_feroxBfe_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_feroxE_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_feroxE_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_feroxEfe_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_feroxEfe_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_feroxG_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_feroxG_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_feroxGfe_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_feroxGfe_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FEROXBFEabcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FEROXBFEabcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FEROXEFEabcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FEROXEFEabcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FEROXGFEabcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FEROXGFEabcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FEROXGFEtonex" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FEROXGFEtonex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FEROXBFEtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_FEROXBFEtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FEROXEFEtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_FEROXEFEtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FEROXGtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_FEROXGtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FEROXEtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_FEROXEtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FEROXBtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_FEROXBtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FEROXBtpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_FEROXBtpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FEROXEtpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_FEROXEtpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FEROXGtpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_FEROXGtpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_drib_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_drib_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DRIBtpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_DRIBtpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DRBK" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DRBK" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DRIBtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_DRIBtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_SCYSSL" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_SCYSSL" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_SLCYSS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_SLCYSS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GSHPO" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GSHPO" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_HHDDI" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_HHDDI" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_INOSR" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_INOSR" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MMSAD3" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_MMSAD3" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CHITPH" fbc:operation="equal" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_D5KGK" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_D5KGK" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_D5KGPA" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_D5KGPA" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DHEDAA" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DHEDAA" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DKDID" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DKDID" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_2INSD" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_2INSD" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DTARTD" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DTARTD" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NMNR" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NMNR" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_RNMK" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_RNMK" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_OACT" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_OACT" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_UDCPAT" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_UDCPAT" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_UDCPMT" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_UDCPMT" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_UDCPRT" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_UDCPRT" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_UDCPGT" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_UDCPGT" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_TCBO" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_TCBO" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GLYBt6ex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_GLYBt6ex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GLYBt6pp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_GLYBt6pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CHITOBex" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CHITOBex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CHITOBpts" fbc:operation="equal" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_RNAMtex" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_RNAMtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_RNAMtpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_RNAMtpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_OAO5t3ex" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_OAO5t3ex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_OAO5t3pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_OAO5t3pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_TCBt2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_TCBt2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_TCBt2ex" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_TCBt2ex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_TTONR1pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_TTONR1pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_TTONtex" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_TTONtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_TTONR2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_TTONR2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_LEUt4rpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_LEUt4rpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_UPLA4NT" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_UPLA4NT" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PSUDS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PSUDS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PFOR" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PFOR" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_NNDMBRT" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_NNDMBRT" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_biomass_iRR1083" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_biomass_iRR1083" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_peptido_ST" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_peptido_ST" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_pe2_ST" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_pe2_ST" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_pg2_ST" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_pg2_ST" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_clpn2_ST" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_clpn2_ST" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_pa2_ST" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_pa2_ST" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ps2_ST" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_ps2_ST" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_12dgr2_ST" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_12dgr2_ST" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_OAL_ST" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_OAL_ST" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_OA4L_ST" fbc:operation="equal" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_OA5L_ST" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_OA5L_ST" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_OA4VL_ST" fbc:operation="equal" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_OA5VL_ST" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_OA5VL_ST" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_OAO4t3pp" fbc:operation="equal" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_OAO4t3ex" fbc:operation="equal" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PYDXtex" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PYDXtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PYDXtpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PYDXtpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PYDXNtex" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PYDXNtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PYDXNtpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PYDXNtpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_HEXt2rpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_HEXt2rpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_4HTHRtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_4HTHRtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_4HTHRtrpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_4HTHRtrpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_4HTHRK" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_4HTHRK" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_35PDE" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_35PDE" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_UROCANH" fbc:operation="equal" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_AADDFT" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_AADDFT" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ENTERHpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ENTERHpp" fbc:operation="lessEqual" fbc:value="0.0001"/>
- <fbc:fluxBound fbc:reaction="R_SALCHS4Hpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_SALCHS4Hpp" fbc:operation="lessEqual" fbc:value="0.0001"/>
- <fbc:fluxBound fbc:reaction="R_SALCHS4FEHpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_SALCHS4FEHpp" fbc:operation="lessEqual" fbc:value="0.0001"/>
- <fbc:fluxBound fbc:reaction="R_DHBSZ3tex" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DHBSZ3tex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DHBSZ3FEexs" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DHBSZ3FEexs" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DHBSZ3FEtonex" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DHBSZ3FEtonex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DHBSZ3FEabcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DHBSZ3FEabcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FEDHBZS3R1" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FEDHBZS3R1" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FEDHBZS3R2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FEDHBZS3R2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FEDHBZS3R3" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FEDHBZS3R3" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_SALCHS2tex" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_SALCHS2tex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_SALCHS2FEexs" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_SALCHS2FEexs" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_SALCHS2FEtonex" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_SALCHS2FEtonex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_SALCHS2FEabcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_SALCHS2FEabcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_SALCHS2FER1" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_SALCHS2FER1" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_SALCHS2FER2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_SALCHS2FER2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_SALCHS2FER3" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_SALCHS2FER3" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_SALCHS2H" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_SALCHS2H" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_SALCHS1H" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_SALCHS1H" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ENTERH" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ENTERH" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DHBZS3H" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DHBZS3H" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DHBZS2H" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DHBZS2H" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ENTERtex" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ENTERtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ENTERGLCT1" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ENTERGLCT1" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ENTERGLCT2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ENTERGLCT2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FEROXBFER1" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FEROXBFER1" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FEROXBFER2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FEROXBFER2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FEROXBFER3" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FEROXBFER3" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FEROXEFER1" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FEROXEFER1" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FEROXEFER2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FEROXEFER2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FEROXEFER3" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FEROXEFER3" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FEROXGFER1" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FEROXGFER1" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FEROXGFER2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FEROXGFER2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FEROXGFER3" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FEROXGFER3" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GULNLtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_GULNLtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GULNLtpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_GULNLtpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GULNLR" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GULNLR" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DXYLUDtex" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_DXYLUDtex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DXYLUDtpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DXYLUDtpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_MUREINLPPTP" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_MUREINLPPTP" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_APOLPPS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_APOLPPS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PROLPPOATPE160" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PROLPPOATPE160" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PROLPPOATPG160" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PROLPPOATPG160" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_PROLPPGT160" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_PROLPPGT160" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DMBZIDS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DMBZIDS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_2HH24DDH1" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_2HH24DDH1" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_GALCTND" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_GALCTND" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DDPGALA" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_DDPGALA" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FOAMtrpp" fbc:operation="greaterEqual" fbc:value="-1000"/>
- <fbc:fluxBound fbc:reaction="R_FOAMtrpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FEENTERR1" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FEENTERR1" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FEENTERR2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FEENTERR2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FEENTERR3" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FEENTERR3" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_SALCHS4FER1" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_SALCHS4FER1" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_SALCHS4FER2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_SALCHS4FER2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_SALCHS4FER3" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_SALCHS4FER3" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_SALCHS4FEtonex" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_SALCHS4FEtonex" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_HISNH4L" fbc:operation="equal" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_AB6PGH" fbc:operation="equal" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_SARCOX" fbc:operation="equal" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FE3HOXabcpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FE3HOXabcpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FEOXAMR1" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FEOXAMR1" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FEOXAMR2" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FEOXAMR2" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_FEOXAMR3" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_FEOXAMR3" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DHBSH" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DHBSH" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ALPATE160pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ALPATE160pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_ALPATG160pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_ALPATG160pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_CYSLDS" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_CYSLDS" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_INOSTtpp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_INOSTtpp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_HDCAt2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_HDCAt2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_OCDCAt2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_OCDCAt2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_OCDCEAt2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_OCDCEAt2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_TTDCAt2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_TTDCAt2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_DDCAt2pp" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_DDCAt2pp" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_biomass_iRR1083_metals" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_biomass_iRR1083_metals" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_dxyl_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_dxyl_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_salchs2fe_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_salchs2fe_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_rnam_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_rnam_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_colipaOA_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_colipaOA_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_udcpo4_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_udcpo4_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_tcb_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_tcb_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_fe3dhbzs3_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_fe3dhbzs3_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_23dhbzs3_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_23dhbzs3_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_guln__L_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_guln__L_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_udcpo5_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_udcpo5_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_4hthr_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_4hthr_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_salchs2_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_salchs2_e" fbc:operation="lessEqual" fbc:value="1000"/>
- <fbc:fluxBound fbc:reaction="R_EX_tton_e" fbc:operation="greaterEqual" fbc:value="0"/>
- <fbc:fluxBound fbc:reaction="R_EX_tton_e" fbc:operation="lessEqual" fbc:value="1000"/>
- </fbc:listOfFluxBounds>
- <fbc:listOfObjectives fbc:activeObjective="obj">
- <fbc:objective fbc:id="obj" fbc:type="maximize">
- <fbc:listOfFluxObjectives>
- <fbc:fluxObjective fbc:reaction="R_biomass_iRR1083_metals" fbc:coefficient="1"/>
- </fbc:listOfFluxObjectives>
- </fbc:objective>
- </fbc:listOfObjectives>
- </model>
-</sbml>
diff --git a/cobra/test/data/textbook.xml b/cobra/test/data/textbook.xml
deleted file mode 100644
index 2b58204..0000000
--- a/cobra/test/data/textbook.xml
+++ /dev/null
@@ -1,1562 +0,0 @@
-<?xml version='1.0' encoding='UTF-8'?>
-<sbml xmlns:fbc="http://www.sbml.org/sbml/level3/version1/fbc/version2" level="3" sboTerm="SBO:0000624" version="1" xmlns="http://www.sbml.org/sbml/level3/version1/core" fbc:required="false">
- <model id="textbook" fbc:strict="true">
- <listOfUnitDefinitions>
- <unitDefinition id="mmol_per_gDW_per_hr">
- <listOfUnits>
- <unit exponent="1" kind="mole" multiplier="1" scale="-3" />
- <unit exponent="-1" kind="gram" multiplier="1" scale="0" />
- <unit exponent="-1" kind="second" multiplier="3600" scale="0" />
- </listOfUnits>
- </unitDefinition>
- </listOfUnitDefinitions>
- <fbc:listOfObjectives fbc:activeObjective="obj">
- <fbc:objective fbc:id="obj" fbc:type="maximize">
- <fbc:listOfFluxObjectives>
- <fbc:fluxObjective fbc:coefficient="1" fbc:reaction="R_Biomass_Ecoli_core" />
- </fbc:listOfFluxObjectives>
- </fbc:objective>
- </fbc:listOfObjectives>
- <listOfParameters>
- <parameter constant="true" id="cobra_default_lb" sboTerm="SBO:0000626" units="mmol_per_gDW_per_hr" value="-1000" />
- <parameter constant="true" id="cobra_default_ub" sboTerm="SBO:0000626" units="mmol_per_gDW_per_hr" value="1000" />
- <parameter constant="true" id="cobra_0_bound" sboTerm="SBO:0000626" units="mmol_per_gDW_per_hr" value="0" />
- <parameter constant="true" id="R_ATPM_upper_bound" sboTerm="SBO:0000625" units="mmol_per_gDW_per_hr" value="8.39" />
- <parameter constant="true" id="R_ATPM_lower_bound" sboTerm="SBO:0000625" units="mmol_per_gDW_per_hr" value="8.39" />
- <parameter constant="true" id="R_EX_glc__D_e_lower_bound" sboTerm="SBO:0000625" units="mmol_per_gDW_per_hr" value="-10" />
- </listOfParameters>
- <listOfCompartments>
- <compartment constant="true" id="c" name="Cytoplasm" />
- <compartment constant="true" id="e" name="Extracellular" />
- </listOfCompartments>
- <listOfSpecies>
- <species boundaryCondition="false" compartment="c" constant="false" hasOnlySubstanceUnits="false" id="M_13dpg_c" name="3-Phospho-D-glyceroyl phosphate" fbc:charge="-4" fbc:chemicalFormula="C3H4O10P2" />
- <species boundaryCondition="false" compartment="c" constant="false" hasOnlySubstanceUnits="false" id="M_2pg_c" name="D-Glycerate 2-phosphate" fbc:charge="-3" fbc:chemicalFormula="C3H4O7P" />
- <species boundaryCondition="false" compartment="c" constant="false" hasOnlySubstanceUnits="false" id="M_3pg_c" name="3-Phospho-D-glycerate" fbc:charge="-3" fbc:chemicalFormula="C3H4O7P" />
- <species boundaryCondition="false" compartment="c" constant="false" hasOnlySubstanceUnits="false" id="M_6pgc_c" name="6-Phospho-D-gluconate" fbc:charge="-3" fbc:chemicalFormula="C6H10O10P" />
- <species boundaryCondition="false" compartment="c" constant="false" hasOnlySubstanceUnits="false" id="M_6pgl_c" name="6-phospho-D-glucono-1,5-lactone" fbc:charge="-2" fbc:chemicalFormula="C6H9O9P" />
- <species boundaryCondition="false" compartment="c" constant="false" hasOnlySubstanceUnits="false" id="M_ac_c" name="Acetate" fbc:charge="-1" fbc:chemicalFormula="C2H3O2" />
- <species boundaryCondition="false" compartment="e" constant="false" hasOnlySubstanceUnits="false" id="M_ac_e" name="Acetate" fbc:charge="-1" fbc:chemicalFormula="C2H3O2" />
- <species boundaryCondition="false" compartment="c" constant="false" hasOnlySubstanceUnits="false" id="M_acald_c" name="Acetaldehyde" fbc:charge="0" fbc:chemicalFormula="C2H4O" />
- <species boundaryCondition="false" compartment="e" constant="false" hasOnlySubstanceUnits="false" id="M_acald_e" name="Acetaldehyde" fbc:charge="0" fbc:chemicalFormula="C2H4O" />
- <species boundaryCondition="false" compartment="c" constant="false" hasOnlySubstanceUnits="false" id="M_accoa_c" name="Acetyl-CoA" fbc:charge="-4" fbc:chemicalFormula="C23H34N7O17P3S" />
- <species boundaryCondition="false" compartment="c" constant="false" hasOnlySubstanceUnits="false" id="M_acon__C_c" name="cis-Aconitate" fbc:charge="-3" fbc:chemicalFormula="C6H3O6" />
- <species boundaryCondition="false" compartment="c" constant="false" hasOnlySubstanceUnits="false" id="M_actp_c" name="Acetyl phosphate" fbc:charge="-2" fbc:chemicalFormula="C2H3O5P" />
- <species boundaryCondition="false" compartment="c" constant="false" hasOnlySubstanceUnits="false" id="M_adp_c" name="ADP" fbc:charge="-3" fbc:chemicalFormula="C10H12N5O10P2" />
- <species boundaryCondition="false" compartment="c" constant="false" hasOnlySubstanceUnits="false" id="M_akg_c" name="2-Oxoglutarate" fbc:charge="-2" fbc:chemicalFormula="C5H4O5" />
- <species boundaryCondition="false" compartment="e" constant="false" hasOnlySubstanceUnits="false" id="M_akg_e" name="2-Oxoglutarate" fbc:charge="-2" fbc:chemicalFormula="C5H4O5" />
- <species boundaryCondition="false" compartment="c" constant="false" hasOnlySubstanceUnits="false" id="M_amp_c" name="AMP" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O7P" />
- <species boundaryCondition="false" compartment="c" constant="false" hasOnlySubstanceUnits="false" id="M_atp_c" name="ATP" fbc:charge="-4" fbc:chemicalFormula="C10H12N5O13P3" />
- <species boundaryCondition="false" compartment="c" constant="false" hasOnlySubstanceUnits="false" id="M_cit_c" name="Citrate" fbc:charge="-3" fbc:chemicalFormula="C6H5O7" />
- <species boundaryCondition="false" compartment="c" constant="false" hasOnlySubstanceUnits="false" id="M_co2_c" name="CO2" fbc:charge="0" fbc:chemicalFormula="CO2" />
- <species boundaryCondition="false" compartment="e" constant="false" hasOnlySubstanceUnits="false" id="M_co2_e" name="CO2" fbc:charge="0" fbc:chemicalFormula="CO2" />
- <species boundaryCondition="false" compartment="c" constant="false" hasOnlySubstanceUnits="false" id="M_coa_c" name="Coenzyme A" fbc:charge="-4" fbc:chemicalFormula="C21H32N7O16P3S" />
- <species boundaryCondition="false" compartment="c" constant="false" hasOnlySubstanceUnits="false" id="M_dhap_c" name="Dihydroxyacetone phosphate" fbc:charge="-2" fbc:chemicalFormula="C3H5O6P" />
- <species boundaryCondition="false" compartment="c" constant="false" hasOnlySubstanceUnits="false" id="M_e4p_c" name="D-Erythrose 4-phosphate" fbc:charge="-2" fbc:chemicalFormula="C4H7O7P" />
- <species boundaryCondition="false" compartment="c" constant="false" hasOnlySubstanceUnits="false" id="M_etoh_c" name="Ethanol" fbc:charge="0" fbc:chemicalFormula="C2H6O" />
- <species boundaryCondition="false" compartment="e" constant="false" hasOnlySubstanceUnits="false" id="M_etoh_e" name="Ethanol" fbc:charge="0" fbc:chemicalFormula="C2H6O" />
- <species boundaryCondition="false" compartment="c" constant="false" hasOnlySubstanceUnits="false" id="M_f6p_c" name="D-Fructose 6-phosphate" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P" />
- <species boundaryCondition="false" compartment="c" constant="false" hasOnlySubstanceUnits="false" id="M_fdp_c" name="D-Fructose 1,6-bisphosphate" fbc:charge="-4" fbc:chemicalFormula="C6H10O12P2" />
- <species boundaryCondition="false" compartment="c" constant="false" hasOnlySubstanceUnits="false" id="M_for_c" name="Formate" fbc:charge="-1" fbc:chemicalFormula="CH1O2" />
- <species boundaryCondition="false" compartment="e" constant="false" hasOnlySubstanceUnits="false" id="M_for_e" name="Formate" fbc:charge="-1" fbc:chemicalFormula="CH1O2" />
- <species boundaryCondition="false" compartment="e" constant="false" hasOnlySubstanceUnits="false" id="M_fru_e" name="D-Fructose" fbc:charge="0" fbc:chemicalFormula="C6H12O6" />
- <species boundaryCondition="false" compartment="c" constant="false" hasOnlySubstanceUnits="false" id="M_fum_c" name="Fumarate" fbc:charge="-2" fbc:chemicalFormula="C4H2O4" />
- <species boundaryCondition="false" compartment="e" constant="false" hasOnlySubstanceUnits="false" id="M_fum_e" name="Fumarate" fbc:charge="-2" fbc:chemicalFormula="C4H2O4" />
- <species boundaryCondition="false" compartment="c" constant="false" hasOnlySubstanceUnits="false" id="M_g3p_c" name="Glyceraldehyde 3-phosphate" fbc:charge="-2" fbc:chemicalFormula="C3H5O6P" />
- <species boundaryCondition="false" compartment="c" constant="false" hasOnlySubstanceUnits="false" id="M_g6p_c" name="D-Glucose 6-phosphate" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P" />
- <species boundaryCondition="false" compartment="e" constant="false" hasOnlySubstanceUnits="false" id="M_glc__D_e" name="D-Glucose" fbc:charge="0" fbc:chemicalFormula="C6H12O6" />
- <species boundaryCondition="false" compartment="c" constant="false" hasOnlySubstanceUnits="false" id="M_gln__L_c" name="L-Glutamine" fbc:charge="0" fbc:chemicalFormula="C5H10N2O3" />
- <species boundaryCondition="false" compartment="e" constant="false" hasOnlySubstanceUnits="false" id="M_gln__L_e" name="L-Glutamine" fbc:charge="0" fbc:chemicalFormula="C5H10N2O3" />
- <species boundaryCondition="false" compartment="c" constant="false" hasOnlySubstanceUnits="false" id="M_glu__L_c" name="L-Glutamate" fbc:charge="-1" fbc:chemicalFormula="C5H8NO4" />
- <species boundaryCondition="false" compartment="e" constant="false" hasOnlySubstanceUnits="false" id="M_glu__L_e" name="L-Glutamate" fbc:charge="-1" fbc:chemicalFormula="C5H8NO4" />
- <species boundaryCondition="false" compartment="c" constant="false" hasOnlySubstanceUnits="false" id="M_glx_c" name="Glyoxylate" fbc:charge="-1" fbc:chemicalFormula="C2H1O3" />
- <species boundaryCondition="false" compartment="c" constant="false" hasOnlySubstanceUnits="false" id="M_h2o_c" name="H2O" fbc:charge="0" fbc:chemicalFormula="H2O" />
- <species boundaryCondition="false" compartment="e" constant="false" hasOnlySubstanceUnits="false" id="M_h2o_e" name="H2O" fbc:charge="0" fbc:chemicalFormula="H2O" />
- <species boundaryCondition="false" compartment="c" constant="false" hasOnlySubstanceUnits="false" id="M_h_c" name="H+" fbc:charge="1" fbc:chemicalFormula="H" />
- <species boundaryCondition="false" compartment="e" constant="false" hasOnlySubstanceUnits="false" id="M_h_e" name="H+" fbc:charge="1" fbc:chemicalFormula="H" />
- <species boundaryCondition="false" compartment="c" constant="false" hasOnlySubstanceUnits="false" id="M_icit_c" name="Isocitrate" fbc:charge="-3" fbc:chemicalFormula="C6H5O7" />
- <species boundaryCondition="false" compartment="c" constant="false" hasOnlySubstanceUnits="false" id="M_lac__D_c" name="D-Lactate" fbc:charge="-1" fbc:chemicalFormula="C3H5O3" />
- <species boundaryCondition="false" compartment="e" constant="false" hasOnlySubstanceUnits="false" id="M_lac__D_e" name="D-Lactate" fbc:charge="-1" fbc:chemicalFormula="C3H5O3" />
- <species boundaryCondition="false" compartment="c" constant="false" hasOnlySubstanceUnits="false" id="M_mal__L_c" name="L-Malate" fbc:charge="-2" fbc:chemicalFormula="C4H4O5" />
- <species boundaryCondition="false" compartment="e" constant="false" hasOnlySubstanceUnits="false" id="M_mal__L_e" name="L-Malate" fbc:charge="-2" fbc:chemicalFormula="C4H4O5" />
- <species boundaryCondition="false" compartment="c" constant="false" hasOnlySubstanceUnits="false" id="M_nad_c" name="Nicotinamide adenine dinucleotide" fbc:charge="-1" fbc:chemicalFormula="C21H26N7O14P2" />
- <species boundaryCondition="false" compartment="c" constant="false" hasOnlySubstanceUnits="false" id="M_nadh_c" name="Nicotinamide adenine dinucleotide - reduced" fbc:charge="-2" fbc:chemicalFormula="C21H27N7O14P2" />
- <species boundaryCondition="false" compartment="c" constant="false" hasOnlySubstanceUnits="false" id="M_nadp_c" name="Nicotinamide adenine dinucleotide phosphate" fbc:charge="-3" fbc:chemicalFormula="C21H25N7O17P3" />
- <species boundaryCondition="false" compartment="c" constant="false" hasOnlySubstanceUnits="false" id="M_nadph_c" name="Nicotinamide adenine dinucleotide phosphate - reduced" fbc:charge="-4" fbc:chemicalFormula="C21H26N7O17P3" />
- <species boundaryCondition="false" compartment="c" constant="false" hasOnlySubstanceUnits="false" id="M_nh4_c" name="Ammonium" fbc:charge="1" fbc:chemicalFormula="H4N" />
- <species boundaryCondition="false" compartment="e" constant="false" hasOnlySubstanceUnits="false" id="M_nh4_e" name="Ammonium" fbc:charge="1" fbc:chemicalFormula="H4N" />
- <species boundaryCondition="false" compartment="c" constant="false" hasOnlySubstanceUnits="false" id="M_o2_c" name="O2" fbc:charge="0" fbc:chemicalFormula="O2" />
- <species boundaryCondition="false" compartment="e" constant="false" hasOnlySubstanceUnits="false" id="M_o2_e" name="O2" fbc:charge="0" fbc:chemicalFormula="O2" />
- <species boundaryCondition="false" compartment="c" constant="false" hasOnlySubstanceUnits="false" id="M_oaa_c" name="Oxaloacetate" fbc:charge="-2" fbc:chemicalFormula="C4H2O5" />
- <species boundaryCondition="false" compartment="c" constant="false" hasOnlySubstanceUnits="false" id="M_pep_c" name="Phosphoenolpyruvate" fbc:charge="-3" fbc:chemicalFormula="C3H2O6P" />
- <species boundaryCondition="false" compartment="c" constant="false" hasOnlySubstanceUnits="false" id="M_pi_c" name="Phosphate" fbc:charge="-2" fbc:chemicalFormula="HO4P" />
- <species boundaryCondition="false" compartment="e" constant="false" hasOnlySubstanceUnits="false" id="M_pi_e" name="Phosphate" fbc:charge="-2" fbc:chemicalFormula="HO4P" />
- <species boundaryCondition="false" compartment="c" constant="false" hasOnlySubstanceUnits="false" id="M_pyr_c" name="Pyruvate" fbc:charge="-1" fbc:chemicalFormula="C3H3O3" />
- <species boundaryCondition="false" compartment="e" constant="false" hasOnlySubstanceUnits="false" id="M_pyr_e" name="Pyruvate" fbc:charge="-1" fbc:chemicalFormula="C3H3O3" />
- <species boundaryCondition="false" compartment="c" constant="false" hasOnlySubstanceUnits="false" id="M_q8_c" name="Ubiquinone-8" fbc:charge="0" fbc:chemicalFormula="C49H74O4" />
- <species boundaryCondition="false" compartment="c" constant="false" hasOnlySubstanceUnits="false" id="M_q8h2_c" name="Ubiquinol-8" fbc:charge="0" fbc:chemicalFormula="C49H76O4" />
- <species boundaryCondition="false" compartment="c" constant="false" hasOnlySubstanceUnits="false" id="M_r5p_c" name="alpha-D-Ribose 5-phosphate" fbc:charge="-2" fbc:chemicalFormula="C5H9O8P" />
- <species boundaryCondition="false" compartment="c" constant="false" hasOnlySubstanceUnits="false" id="M_ru5p__D_c" name="D-Ribulose 5-phosphate" fbc:charge="-2" fbc:chemicalFormula="C5H9O8P" />
- <species boundaryCondition="false" compartment="c" constant="false" hasOnlySubstanceUnits="false" id="M_s7p_c" name="Sedoheptulose 7-phosphate" fbc:charge="-2" fbc:chemicalFormula="C7H13O10P" />
- <species boundaryCondition="false" compartment="c" constant="false" hasOnlySubstanceUnits="false" id="M_succ_c" name="Succinate" fbc:charge="-2" fbc:chemicalFormula="C4H4O4" />
- <species boundaryCondition="false" compartment="e" constant="false" hasOnlySubstanceUnits="false" id="M_succ_e" name="Succinate" fbc:charge="-2" fbc:chemicalFormula="C4H4O4" />
- <species boundaryCondition="false" compartment="c" constant="false" hasOnlySubstanceUnits="false" id="M_succoa_c" name="Succinyl-CoA" fbc:charge="-5" fbc:chemicalFormula="C25H35N7O19P3S" />
- <species boundaryCondition="false" compartment="c" constant="false" hasOnlySubstanceUnits="false" id="M_xu5p__D_c" name="D-Xylulose 5-phosphate" fbc:charge="-2" fbc:chemicalFormula="C5H9O8P" />
- </listOfSpecies>
- <fbc:listOfGeneProducts>
- <fbc:geneProduct fbc:id="G_b0351" fbc:label="b0351" />
- <fbc:geneProduct fbc:id="G_b1241" fbc:label="b1241" />
- <fbc:geneProduct fbc:id="G_s0001" fbc:label="s0001" />
- <fbc:geneProduct fbc:id="G_b3115" fbc:label="b3115" />
- <fbc:geneProduct fbc:id="G_b2296" fbc:label="b2296" />
- <fbc:geneProduct fbc:id="G_b1849" fbc:label="b1849" />
- <fbc:geneProduct fbc:id="G_b0118" fbc:label="b0118" />
- <fbc:geneProduct fbc:id="G_b1276" fbc:label="b1276" />
- <fbc:geneProduct fbc:id="G_b0474" fbc:label="b0474" />
- <fbc:geneProduct fbc:id="G_b0726" fbc:label="b0726" />
- <fbc:geneProduct fbc:id="G_b0116" fbc:label="b0116" />
- <fbc:geneProduct fbc:id="G_b0727" fbc:label="b0727" />
- <fbc:geneProduct fbc:id="G_b2587" fbc:label="b2587" />
- <fbc:geneProduct fbc:id="G_b0356" fbc:label="b0356" />
- <fbc:geneProduct fbc:id="G_b1478" fbc:label="b1478" />
- <fbc:geneProduct fbc:id="G_b3738" fbc:label="b3738" />
- <fbc:geneProduct fbc:id="G_b3734" fbc:label="b3734" />
- <fbc:geneProduct fbc:id="G_b3735" fbc:label="b3735" />
- <fbc:geneProduct fbc:id="G_b3736" fbc:label="b3736" />
- <fbc:geneProduct fbc:id="G_b3737" fbc:label="b3737" />
- <fbc:geneProduct fbc:id="G_b3731" fbc:label="b3731" />
- <fbc:geneProduct fbc:id="G_b3732" fbc:label="b3732" />
- <fbc:geneProduct fbc:id="G_b3733" fbc:label="b3733" />
- <fbc:geneProduct fbc:id="G_b3739" fbc:label="b3739" />
- <fbc:geneProduct fbc:id="G_b0720" fbc:label="b0720" />
- <fbc:geneProduct fbc:id="G_b0734" fbc:label="b0734" />
- <fbc:geneProduct fbc:id="G_b0978" fbc:label="b0978" />
- <fbc:geneProduct fbc:id="G_b0733" fbc:label="b0733" />
- <fbc:geneProduct fbc:id="G_b0979" fbc:label="b0979" />
- <fbc:geneProduct fbc:id="G_b3603" fbc:label="b3603" fbc:name="lldP" />
- <fbc:geneProduct fbc:id="G_b2975" fbc:label="b2975" fbc:name="glcA" />
- <fbc:geneProduct fbc:id="G_b2779" fbc:label="b2779" fbc:name="eno" />
- <fbc:geneProduct fbc:id="G_b2097" fbc:label="b2097" fbc:name="fbaB" />
- <fbc:geneProduct fbc:id="G_b1773" fbc:label="b1773" fbc:name="ydjI" />
- <fbc:geneProduct fbc:id="G_b2925" fbc:label="b2925" fbc:name="fbaA" />
- <fbc:geneProduct fbc:id="G_b4232" fbc:label="b4232" />
- <fbc:geneProduct fbc:id="G_b3925" fbc:label="b3925" />
- <fbc:geneProduct fbc:id="G_b0904" fbc:label="b0904" />
- <fbc:geneProduct fbc:id="G_b2492" fbc:label="b2492" />
- <fbc:geneProduct fbc:id="G_b4154" fbc:label="b4154" />
- <fbc:geneProduct fbc:id="G_b4152" fbc:label="b4152" />
- <fbc:geneProduct fbc:id="G_b4151" fbc:label="b4151" />
- <fbc:geneProduct fbc:id="G_b4153" fbc:label="b4153" />
- <fbc:geneProduct fbc:id="G_b1818" fbc:label="b1818" fbc:name="manY" />
- <fbc:geneProduct fbc:id="G_b1817" fbc:label="b1817" fbc:name="manX" />
- <fbc:geneProduct fbc:id="G_b1819" fbc:label="b1819" fbc:name="manZ" />
- <fbc:geneProduct fbc:id="G_b2416" fbc:label="b2416" fbc:name="ptsI" />
- <fbc:geneProduct fbc:id="G_b2415" fbc:label="b2415" fbc:name="ptsH" />
- <fbc:geneProduct fbc:id="G_b4122" fbc:label="b4122" />
- <fbc:geneProduct fbc:id="G_b1611" fbc:label="b1611" />
- <fbc:geneProduct fbc:id="G_b1612" fbc:label="b1612" />
- <fbc:geneProduct fbc:id="G_b3528" fbc:label="b3528" />
- <fbc:geneProduct fbc:id="G_b1852" fbc:label="b1852" />
- <fbc:geneProduct fbc:id="G_b1779" fbc:label="b1779" fbc:name="gapA" />
- <fbc:geneProduct fbc:id="G_b2417" fbc:label="b2417" fbc:name="crr" />
- <fbc:geneProduct fbc:id="G_b1101" fbc:label="b1101" fbc:name="ptsG" />
- <fbc:geneProduct fbc:id="G_b1621" fbc:label="b1621" fbc:name="malX" />
- <fbc:geneProduct fbc:id="G_b1297" fbc:label="b1297" />
- <fbc:geneProduct fbc:id="G_b3870" fbc:label="b3870" />
- <fbc:geneProduct fbc:id="G_b0810" fbc:label="b0810" />
- <fbc:geneProduct fbc:id="G_b0811" fbc:label="b0811" />
- <fbc:geneProduct fbc:id="G_b0809" fbc:label="b0809" />
- <fbc:geneProduct fbc:id="G_b1761" fbc:label="b1761" />
- <fbc:geneProduct fbc:id="G_b1812" fbc:label="b1812" />
- <fbc:geneProduct fbc:id="G_b0485" fbc:label="b0485" />
- <fbc:geneProduct fbc:id="G_b1524" fbc:label="b1524" />
- <fbc:geneProduct fbc:id="G_b3212" fbc:label="b3212" />
- <fbc:geneProduct fbc:id="G_b3213" fbc:label="b3213" />
- <fbc:geneProduct fbc:id="G_b4077" fbc:label="b4077" />
- <fbc:geneProduct fbc:id="G_b2029" fbc:label="b2029" />
- <fbc:geneProduct fbc:id="G_b0875" fbc:label="b0875" fbc:name="aqpZ" />
- <fbc:geneProduct fbc:id="G_b1136" fbc:label="b1136" />
- <fbc:geneProduct fbc:id="G_b4015" fbc:label="b4015" />
- <fbc:geneProduct fbc:id="G_b2133" fbc:label="b2133" fbc:name="dld" />
- <fbc:geneProduct fbc:id="G_b1380" fbc:label="b1380" fbc:name="ldhA" />
- <fbc:geneProduct fbc:id="G_b4014" fbc:label="b4014" />
- <fbc:geneProduct fbc:id="G_b2976" fbc:label="b2976" />
- <fbc:geneProduct fbc:id="G_b3236" fbc:label="b3236" />
- <fbc:geneProduct fbc:id="G_b1479" fbc:label="b1479" />
- <fbc:geneProduct fbc:id="G_b2463" fbc:label="b2463" />
- <fbc:geneProduct fbc:id="G_b2276" fbc:label="b2276" />
- <fbc:geneProduct fbc:id="G_b2286" fbc:label="b2286" />
- <fbc:geneProduct fbc:id="G_b2278" fbc:label="b2278" />
- <fbc:geneProduct fbc:id="G_b2285" fbc:label="b2285" />
- <fbc:geneProduct fbc:id="G_b2284" fbc:label="b2284" />
- <fbc:geneProduct fbc:id="G_b2287" fbc:label="b2287" />
- <fbc:geneProduct fbc:id="G_b2283" fbc:label="b2283" />
- <fbc:geneProduct fbc:id="G_b2282" fbc:label="b2282" />
- <fbc:geneProduct fbc:id="G_b2279" fbc:label="b2279" />
- <fbc:geneProduct fbc:id="G_b2281" fbc:label="b2281" />
- <fbc:geneProduct fbc:id="G_b2277" fbc:label="b2277" />
- <fbc:geneProduct fbc:id="G_b2280" fbc:label="b2280" />
- <fbc:geneProduct fbc:id="G_b2288" fbc:label="b2288" />
- <fbc:geneProduct fbc:id="G_b1602" fbc:label="b1602" />
- <fbc:geneProduct fbc:id="G_b3962" fbc:label="b3962" />
- <fbc:geneProduct fbc:id="G_b1603" fbc:label="b1603" />
- <fbc:geneProduct fbc:id="G_b0451" fbc:label="b0451" />
- <fbc:geneProduct fbc:id="G_b0114" fbc:label="b0114" />
- <fbc:geneProduct fbc:id="G_b0115" fbc:label="b0115" />
- <fbc:geneProduct fbc:id="G_b1723" fbc:label="b1723" fbc:name="pfkB" />
- <fbc:geneProduct fbc:id="G_b3916" fbc:label="b3916" fbc:name="pfkA" />
- <fbc:geneProduct fbc:id="G_b3114" fbc:label="b3114" />
- <fbc:geneProduct fbc:id="G_b3951" fbc:label="b3951" />
- <fbc:geneProduct fbc:id="G_b3952" fbc:label="b3952" />
- <fbc:geneProduct fbc:id="G_b0902" fbc:label="b0902" />
- <fbc:geneProduct fbc:id="G_b0903" fbc:label="b0903" />
- <fbc:geneProduct fbc:id="G_b2579" fbc:label="b2579" />
- <fbc:geneProduct fbc:id="G_b4025" fbc:label="b4025" fbc:name="pgi" />
- <fbc:geneProduct fbc:id="G_b2926" fbc:label="b2926" fbc:name="pgk" />
- <fbc:geneProduct fbc:id="G_b0767" fbc:label="b0767" />
- <fbc:geneProduct fbc:id="G_b4395" fbc:label="b4395" fbc:name="ytjC" />
- <fbc:geneProduct fbc:id="G_b3612" fbc:label="b3612" fbc:name="gpmM" />
- <fbc:geneProduct fbc:id="G_b0755" fbc:label="b0755" fbc:name="gpmA" />
- <fbc:geneProduct fbc:id="G_b2987" fbc:label="b2987" fbc:name="pitB" />
- <fbc:geneProduct fbc:id="G_b3493" fbc:label="b3493" fbc:name="pitA" />
- <fbc:geneProduct fbc:id="G_b3956" fbc:label="b3956" />
- <fbc:geneProduct fbc:id="G_b3403" fbc:label="b3403" />
- <fbc:geneProduct fbc:id="G_b1702" fbc:label="b1702" />
- <fbc:geneProduct fbc:id="G_b2297" fbc:label="b2297" />
- <fbc:geneProduct fbc:id="G_b2458" fbc:label="b2458" />
- <fbc:geneProduct fbc:id="G_b1854" fbc:label="b1854" fbc:name="pykA" />
- <fbc:geneProduct fbc:id="G_b1676" fbc:label="b1676" fbc:name="pykF" />
- <fbc:geneProduct fbc:id="G_b3386" fbc:label="b3386" />
- <fbc:geneProduct fbc:id="G_b4301" fbc:label="b4301" />
- <fbc:geneProduct fbc:id="G_b4090" fbc:label="b4090" />
- <fbc:geneProduct fbc:id="G_b2914" fbc:label="b2914" />
- <fbc:geneProduct fbc:id="G_b0722" fbc:label="b0722" />
- <fbc:geneProduct fbc:id="G_b0724" fbc:label="b0724" />
- <fbc:geneProduct fbc:id="G_b0723" fbc:label="b0723" />
- <fbc:geneProduct fbc:id="G_b0721" fbc:label="b0721" />
- <fbc:geneProduct fbc:id="G_b0729" fbc:label="b0729" />
- <fbc:geneProduct fbc:id="G_b0728" fbc:label="b0728" />
- <fbc:geneProduct fbc:id="G_b2464" fbc:label="b2464" />
- <fbc:geneProduct fbc:id="G_b0008" fbc:label="b0008" />
- <fbc:geneProduct fbc:id="G_b2935" fbc:label="b2935" />
- <fbc:geneProduct fbc:id="G_b2465" fbc:label="b2465" />
- <fbc:geneProduct fbc:id="G_b3919" fbc:label="b3919" fbc:name="tpiA" />
- </fbc:listOfGeneProducts>
- <listOfReactions>
- <reaction fast="false" id="R_ACALD" name="acetaldehyde dehydrogenase (acetylating)" reversible="true" fbc:lowerFluxBound="cobra_default_lb" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_nad_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_acald_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_coa_c" stoichiometry="1" />
- </listOfReactants>
- <listOfProducts>
- <speciesReference constant="true" species="M_accoa_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_h_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_nadh_c" stoichiometry="1" />
- </listOfProducts>
- <fbc:geneProductAssociation>
- <fbc:or>
- <fbc:geneProductRef fbc:geneProduct="G_b0351" />
- <fbc:geneProductRef fbc:geneProduct="G_b1241" />
- </fbc:or>
- </fbc:geneProductAssociation>
- </reaction>
- <reaction fast="false" id="R_ACALDt" name="acetaldehyde reversible transport" reversible="true" fbc:lowerFluxBound="cobra_default_lb" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_acald_e" stoichiometry="1" />
- </listOfReactants>
- <listOfProducts>
- <speciesReference constant="true" species="M_acald_c" stoichiometry="1" />
- </listOfProducts>
- <fbc:geneProductAssociation>
- <fbc:geneProductRef fbc:geneProduct="G_s0001" />
- </fbc:geneProductAssociation>
- </reaction>
- <reaction fast="false" id="R_ACKr" name="acetate kinase" reversible="true" fbc:lowerFluxBound="cobra_default_lb" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_ac_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_atp_c" stoichiometry="1" />
- </listOfReactants>
- <listOfProducts>
- <speciesReference constant="true" species="M_actp_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_adp_c" stoichiometry="1" />
- </listOfProducts>
- <fbc:geneProductAssociation>
- <fbc:or>
- <fbc:geneProductRef fbc:geneProduct="G_b2296" />
- <fbc:geneProductRef fbc:geneProduct="G_b1849" />
- <fbc:geneProductRef fbc:geneProduct="G_b3115" />
- </fbc:or>
- </fbc:geneProductAssociation>
- </reaction>
- <reaction fast="false" id="R_ACONTa" name="aconitase (half-reaction A, Citrate hydro-lyase)" reversible="true" fbc:lowerFluxBound="cobra_default_lb" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_cit_c" stoichiometry="1" />
- </listOfReactants>
- <listOfProducts>
- <speciesReference constant="true" species="M_h2o_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_acon__C_c" stoichiometry="1" />
- </listOfProducts>
- <fbc:geneProductAssociation>
- <fbc:or>
- <fbc:geneProductRef fbc:geneProduct="G_b0118" />
- <fbc:geneProductRef fbc:geneProduct="G_b1276" />
- </fbc:or>
- </fbc:geneProductAssociation>
- </reaction>
- <reaction fast="false" id="R_ACONTb" name="aconitase (half-reaction B, Isocitrate hydro-lyase)" reversible="true" fbc:lowerFluxBound="cobra_default_lb" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_h2o_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_acon__C_c" stoichiometry="1" />
- </listOfReactants>
- <listOfProducts>
- <speciesReference constant="true" species="M_icit_c" stoichiometry="1" />
- </listOfProducts>
- <fbc:geneProductAssociation>
- <fbc:or>
- <fbc:geneProductRef fbc:geneProduct="G_b0118" />
- <fbc:geneProductRef fbc:geneProduct="G_b1276" />
- </fbc:or>
- </fbc:geneProductAssociation>
- </reaction>
- <reaction fast="false" id="R_ACt2r" name="acetate reversible transport via proton symport" reversible="true" fbc:lowerFluxBound="cobra_default_lb" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_h_e" stoichiometry="1" />
- <speciesReference constant="true" species="M_ac_e" stoichiometry="1" />
- </listOfReactants>
- <listOfProducts>
- <speciesReference constant="true" species="M_ac_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_h_c" stoichiometry="1" />
- </listOfProducts>
- </reaction>
- <reaction fast="false" id="R_ADK1" name="adenylate kinase" reversible="true" fbc:lowerFluxBound="cobra_default_lb" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_atp_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_amp_c" stoichiometry="1" />
- </listOfReactants>
- <listOfProducts>
- <speciesReference constant="true" species="M_adp_c" stoichiometry="2" />
- </listOfProducts>
- <fbc:geneProductAssociation>
- <fbc:geneProductRef fbc:geneProduct="G_b0474" />
- </fbc:geneProductAssociation>
- </reaction>
- <reaction fast="false" id="R_AKGDH" name="2-Oxoglutarate dehydrogenase" reversible="false" fbc:lowerFluxBound="cobra_0_bound" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_akg_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_nad_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_coa_c" stoichiometry="1" />
- </listOfReactants>
- <listOfProducts>
- <speciesReference constant="true" species="M_co2_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_nadh_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_succoa_c" stoichiometry="1" />
- </listOfProducts>
- <fbc:geneProductAssociation>
- <fbc:and>
- <fbc:geneProductRef fbc:geneProduct="G_b0727" />
- <fbc:geneProductRef fbc:geneProduct="G_b0116" />
- <fbc:geneProductRef fbc:geneProduct="G_b0726" />
- </fbc:and>
- </fbc:geneProductAssociation>
- </reaction>
- <reaction fast="false" id="R_AKGt2r" name="2-oxoglutarate reversible transport via symport" reversible="true" fbc:lowerFluxBound="cobra_default_lb" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_akg_e" stoichiometry="1" />
- <speciesReference constant="true" species="M_h_e" stoichiometry="1" />
- </listOfReactants>
- <listOfProducts>
- <speciesReference constant="true" species="M_akg_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_h_c" stoichiometry="1" />
- </listOfProducts>
- <fbc:geneProductAssociation>
- <fbc:geneProductRef fbc:geneProduct="G_b2587" />
- </fbc:geneProductAssociation>
- </reaction>
- <reaction fast="false" id="R_ALCD2x" name="alcohol dehydrogenase (ethanol)" reversible="true" fbc:lowerFluxBound="cobra_default_lb" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_etoh_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_nad_c" stoichiometry="1" />
- </listOfReactants>
- <listOfProducts>
- <speciesReference constant="true" species="M_h_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_nadh_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_acald_c" stoichiometry="1" />
- </listOfProducts>
- <fbc:geneProductAssociation>
- <fbc:or>
- <fbc:geneProductRef fbc:geneProduct="G_b0356" />
- <fbc:geneProductRef fbc:geneProduct="G_b1241" />
- <fbc:geneProductRef fbc:geneProduct="G_b1478" />
- </fbc:or>
- </fbc:geneProductAssociation>
- </reaction>
- <reaction fast="false" id="R_ATPM" name="ATP maintenance requirement" reversible="false" fbc:lowerFluxBound="R_ATPM_lower_bound" fbc:upperFluxBound="R_ATPM_upper_bound">
- <listOfReactants>
- <speciesReference constant="true" species="M_h2o_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_atp_c" stoichiometry="1" />
- </listOfReactants>
- <listOfProducts>
- <speciesReference constant="true" species="M_pi_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_h_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_adp_c" stoichiometry="1" />
- </listOfProducts>
- </reaction>
- <reaction fast="false" id="R_ATPS4r" name="ATP synthase (four protons for one ATP)" reversible="true" fbc:lowerFluxBound="cobra_default_lb" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_pi_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_adp_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_h_e" stoichiometry="4" />
- </listOfReactants>
- <listOfProducts>
- <speciesReference constant="true" species="M_h2o_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_h_c" stoichiometry="3" />
- <speciesReference constant="true" species="M_atp_c" stoichiometry="1" />
- </listOfProducts>
- <fbc:geneProductAssociation>
- <fbc:or>
- <fbc:and>
- <fbc:geneProductRef fbc:geneProduct="G_b3739" />
- <fbc:and>
- <fbc:geneProductRef fbc:geneProduct="G_b3737" />
- <fbc:geneProductRef fbc:geneProduct="G_b3736" />
- <fbc:geneProductRef fbc:geneProduct="G_b3738" />
- </fbc:and>
- <fbc:and>
- <fbc:geneProductRef fbc:geneProduct="G_b3735" />
- <fbc:geneProductRef fbc:geneProduct="G_b3734" />
- <fbc:geneProductRef fbc:geneProduct="G_b3732" />
- <fbc:geneProductRef fbc:geneProduct="G_b3733" />
- <fbc:geneProductRef fbc:geneProduct="G_b3731" />
- </fbc:and>
- </fbc:and>
- <fbc:and>
- <fbc:and>
- <fbc:geneProductRef fbc:geneProduct="G_b3737" />
- <fbc:geneProductRef fbc:geneProduct="G_b3736" />
- <fbc:geneProductRef fbc:geneProduct="G_b3738" />
- </fbc:and>
- <fbc:and>
- <fbc:geneProductRef fbc:geneProduct="G_b3735" />
- <fbc:geneProductRef fbc:geneProduct="G_b3734" />
- <fbc:geneProductRef fbc:geneProduct="G_b3732" />
- <fbc:geneProductRef fbc:geneProduct="G_b3733" />
- <fbc:geneProductRef fbc:geneProduct="G_b3731" />
- </fbc:and>
- </fbc:and>
- </fbc:or>
- </fbc:geneProductAssociation>
- </reaction>
- <reaction fast="false" id="R_Biomass_Ecoli_core" name="core E. coli biomass equation (Neidhardt Based with GAM, N metabolism)" reversible="false" fbc:lowerFluxBound="cobra_0_bound" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_glu__L_c" stoichiometry="4.9414" />
- <speciesReference constant="true" species="M_r5p_c" stoichiometry="0.8977" />
- <speciesReference constant="true" species="M_atp_c" stoichiometry="59.81" />
- <speciesReference constant="true" species="M_gln__L_c" stoichiometry="0.2557" />
- <speciesReference constant="true" species="M_accoa_c" stoichiometry="3.7478" />
- <speciesReference constant="true" species="M_g3p_c" stoichiometry="0.129" />
- <speciesReference constant="true" species="M_e4p_c" stoichiometry="0.361" />
- <speciesReference constant="true" species="M_oaa_c" stoichiometry="1.7867" />
- <speciesReference constant="true" species="M_pep_c" stoichiometry="0.5191" />
- <speciesReference constant="true" species="M_3pg_c" stoichiometry="1.496" />
- <speciesReference constant="true" species="M_g6p_c" stoichiometry="0.205" />
- <speciesReference constant="true" species="M_nadph_c" stoichiometry="13.0279" />
- <speciesReference constant="true" species="M_pyr_c" stoichiometry="2.8328" />
- <speciesReference constant="true" species="M_h2o_c" stoichiometry="59.81" />
- <speciesReference constant="true" species="M_nad_c" stoichiometry="3.547" />
- <speciesReference constant="true" species="M_f6p_c" stoichiometry="0.0709" />
- </listOfReactants>
- <listOfProducts>
- <speciesReference constant="true" species="M_akg_c" stoichiometry="4.1182" />
- <speciesReference constant="true" species="M_adp_c" stoichiometry="59.81" />
- <speciesReference constant="true" species="M_nadh_c" stoichiometry="3.547" />
- <speciesReference constant="true" species="M_pi_c" stoichiometry="59.81" />
- <speciesReference constant="true" species="M_nadp_c" stoichiometry="13.0279" />
- <speciesReference constant="true" species="M_h_c" stoichiometry="59.81" />
- <speciesReference constant="true" species="M_coa_c" stoichiometry="3.7478" />
- </listOfProducts>
- </reaction>
- <reaction fast="false" id="R_CO2t" name="CO2 transporter via diffusion" reversible="true" fbc:lowerFluxBound="cobra_default_lb" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_co2_e" stoichiometry="1" />
- </listOfReactants>
- <listOfProducts>
- <speciesReference constant="true" species="M_co2_c" stoichiometry="1" />
- </listOfProducts>
- <fbc:geneProductAssociation>
- <fbc:geneProductRef fbc:geneProduct="G_s0001" />
- </fbc:geneProductAssociation>
- </reaction>
- <reaction fast="false" id="R_CS" name="citrate synthase" reversible="false" fbc:lowerFluxBound="cobra_0_bound" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_h2o_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_accoa_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_oaa_c" stoichiometry="1" />
- </listOfReactants>
- <listOfProducts>
- <speciesReference constant="true" species="M_h_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_cit_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_coa_c" stoichiometry="1" />
- </listOfProducts>
- <fbc:geneProductAssociation>
- <fbc:geneProductRef fbc:geneProduct="G_b0720" />
- </fbc:geneProductAssociation>
- </reaction>
- <reaction fast="false" id="R_CYTBD" name="cytochrome oxidase bd (ubiquinol-8: 2 protons)" reversible="false" fbc:lowerFluxBound="cobra_0_bound" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_o2_c" stoichiometry="0.5" />
- <speciesReference constant="true" species="M_h_c" stoichiometry="2" />
- <speciesReference constant="true" species="M_q8h2_c" stoichiometry="1" />
- </listOfReactants>
- <listOfProducts>
- <speciesReference constant="true" species="M_h2o_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_h_e" stoichiometry="2" />
- <speciesReference constant="true" species="M_q8_c" stoichiometry="1" />
- </listOfProducts>
- <fbc:geneProductAssociation>
- <fbc:or>
- <fbc:and>
- <fbc:geneProductRef fbc:geneProduct="G_b0979" />
- <fbc:geneProductRef fbc:geneProduct="G_b0978" />
- </fbc:and>
- <fbc:and>
- <fbc:geneProductRef fbc:geneProduct="G_b0733" />
- <fbc:geneProductRef fbc:geneProduct="G_b0734" />
- </fbc:and>
- </fbc:or>
- </fbc:geneProductAssociation>
- </reaction>
- <reaction fast="false" id="R_D_LACt2" name="D-lactate transport via proton symport" reversible="true" fbc:lowerFluxBound="cobra_default_lb" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_lac__D_e" stoichiometry="1" />
- <speciesReference constant="true" species="M_h_e" stoichiometry="1" />
- </listOfReactants>
- <listOfProducts>
- <speciesReference constant="true" species="M_h_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_lac__D_c" stoichiometry="1" />
- </listOfProducts>
- <fbc:geneProductAssociation>
- <fbc:or>
- <fbc:geneProductRef fbc:geneProduct="G_b2975" />
- <fbc:geneProductRef fbc:geneProduct="G_b3603" />
- </fbc:or>
- </fbc:geneProductAssociation>
- </reaction>
- <reaction fast="false" id="R_ENO" name="enolase" reversible="true" fbc:lowerFluxBound="cobra_default_lb" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_2pg_c" stoichiometry="1" />
- </listOfReactants>
- <listOfProducts>
- <speciesReference constant="true" species="M_h2o_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_pep_c" stoichiometry="1" />
- </listOfProducts>
- <fbc:geneProductAssociation>
- <fbc:geneProductRef fbc:geneProduct="G_b2779" />
- </fbc:geneProductAssociation>
- </reaction>
- <reaction fast="false" id="R_ETOHt2r" name="ethanol reversible transport via proton symport" reversible="true" fbc:lowerFluxBound="cobra_default_lb" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_h_e" stoichiometry="1" />
- <speciesReference constant="true" species="M_etoh_e" stoichiometry="1" />
- </listOfReactants>
- <listOfProducts>
- <speciesReference constant="true" species="M_etoh_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_h_c" stoichiometry="1" />
- </listOfProducts>
- </reaction>
- <reaction fast="false" id="R_EX_ac_e" name="Acetate exchange" reversible="false" fbc:lowerFluxBound="cobra_0_bound" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_ac_e" stoichiometry="1" />
- </listOfReactants>
- </reaction>
- <reaction fast="false" id="R_EX_acald_e" name="Acetaldehyde exchange" reversible="false" fbc:lowerFluxBound="cobra_0_bound" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_acald_e" stoichiometry="1" />
- </listOfReactants>
- </reaction>
- <reaction fast="false" id="R_EX_akg_e" name="2-Oxoglutarate exchange" reversible="false" fbc:lowerFluxBound="cobra_0_bound" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_akg_e" stoichiometry="1" />
- </listOfReactants>
- </reaction>
- <reaction fast="false" id="R_EX_co2_e" name="CO2 exchange" reversible="true" fbc:lowerFluxBound="cobra_default_lb" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_co2_e" stoichiometry="1" />
- </listOfReactants>
- </reaction>
- <reaction fast="false" id="R_EX_etoh_e" name="Ethanol exchange" reversible="false" fbc:lowerFluxBound="cobra_0_bound" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_etoh_e" stoichiometry="1" />
- </listOfReactants>
- </reaction>
- <reaction fast="false" id="R_EX_for_e" name="Formate exchange" reversible="false" fbc:lowerFluxBound="cobra_0_bound" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_for_e" stoichiometry="1" />
- </listOfReactants>
- </reaction>
- <reaction fast="false" id="R_EX_fru_e" name="D-Fructose exchange" reversible="false" fbc:lowerFluxBound="cobra_0_bound" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_fru_e" stoichiometry="1" />
- </listOfReactants>
- </reaction>
- <reaction fast="false" id="R_EX_fum_e" name="Fumarate exchange" reversible="false" fbc:lowerFluxBound="cobra_0_bound" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_fum_e" stoichiometry="1" />
- </listOfReactants>
- </reaction>
- <reaction fast="false" id="R_EX_glc__D_e" name="D-Glucose exchange" reversible="true" fbc:lowerFluxBound="R_EX_glc__D_e_lower_bound" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_glc__D_e" stoichiometry="1" />
- </listOfReactants>
- </reaction>
- <reaction fast="false" id="R_EX_gln__L_e" name="L-Glutamine exchange" reversible="false" fbc:lowerFluxBound="cobra_0_bound" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_gln__L_e" stoichiometry="1" />
- </listOfReactants>
- </reaction>
- <reaction fast="false" id="R_EX_glu__L_e" name="L-Glutamate exchange" reversible="false" fbc:lowerFluxBound="cobra_0_bound" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_glu__L_e" stoichiometry="1" />
- </listOfReactants>
- </reaction>
- <reaction fast="false" id="R_EX_h2o_e" name="H2O exchange" reversible="true" fbc:lowerFluxBound="cobra_default_lb" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_h2o_e" stoichiometry="1" />
- </listOfReactants>
- </reaction>
- <reaction fast="false" id="R_EX_h_e" name="H+ exchange" reversible="true" fbc:lowerFluxBound="cobra_default_lb" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_h_e" stoichiometry="1" />
- </listOfReactants>
- </reaction>
- <reaction fast="false" id="R_EX_lac__D_e" name="D-lactate exchange" reversible="false" fbc:lowerFluxBound="cobra_0_bound" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_lac__D_e" stoichiometry="1" />
- </listOfReactants>
- </reaction>
- <reaction fast="false" id="R_EX_mal__L_e" name="L-Malate exchange" reversible="false" fbc:lowerFluxBound="cobra_0_bound" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_mal__L_e" stoichiometry="1" />
- </listOfReactants>
- </reaction>
- <reaction fast="false" id="R_EX_nh4_e" name="Ammonia exchange" reversible="true" fbc:lowerFluxBound="cobra_default_lb" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_nh4_e" stoichiometry="1" />
- </listOfReactants>
- </reaction>
- <reaction fast="false" id="R_EX_o2_e" name="O2 exchange" reversible="true" fbc:lowerFluxBound="cobra_default_lb" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_o2_e" stoichiometry="1" />
- </listOfReactants>
- </reaction>
- <reaction fast="false" id="R_EX_pi_e" name="Phosphate exchange" reversible="true" fbc:lowerFluxBound="cobra_default_lb" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_pi_e" stoichiometry="1" />
- </listOfReactants>
- </reaction>
- <reaction fast="false" id="R_EX_pyr_e" name="Pyruvate exchange" reversible="false" fbc:lowerFluxBound="cobra_0_bound" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_pyr_e" stoichiometry="1" />
- </listOfReactants>
- </reaction>
- <reaction fast="false" id="R_EX_succ_e" name="Succinate exchange" reversible="false" fbc:lowerFluxBound="cobra_0_bound" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_succ_e" stoichiometry="1" />
- </listOfReactants>
- </reaction>
- <reaction fast="false" id="R_FBA" name="fructose-bisphosphate aldolase" reversible="true" fbc:lowerFluxBound="cobra_default_lb" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_fdp_c" stoichiometry="1" />
- </listOfReactants>
- <listOfProducts>
- <speciesReference constant="true" species="M_dhap_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_g3p_c" stoichiometry="1" />
- </listOfProducts>
- <fbc:geneProductAssociation>
- <fbc:or>
- <fbc:geneProductRef fbc:geneProduct="G_b2925" />
- <fbc:geneProductRef fbc:geneProduct="G_b1773" />
- <fbc:geneProductRef fbc:geneProduct="G_b2097" />
- </fbc:or>
- </fbc:geneProductAssociation>
- </reaction>
- <reaction fast="false" id="R_FBP" name="fructose-bisphosphatase" reversible="false" fbc:lowerFluxBound="cobra_0_bound" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_h2o_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_fdp_c" stoichiometry="1" />
- </listOfReactants>
- <listOfProducts>
- <speciesReference constant="true" species="M_pi_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_f6p_c" stoichiometry="1" />
- </listOfProducts>
- <fbc:geneProductAssociation>
- <fbc:or>
- <fbc:geneProductRef fbc:geneProduct="G_b4232" />
- <fbc:geneProductRef fbc:geneProduct="G_b3925" />
- </fbc:or>
- </fbc:geneProductAssociation>
- </reaction>
- <reaction fast="false" id="R_FORt2" name="formate transport in via proton symport" reversible="false" fbc:lowerFluxBound="cobra_0_bound" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_for_e" stoichiometry="1" />
- <speciesReference constant="true" species="M_h_e" stoichiometry="1" />
- </listOfReactants>
- <listOfProducts>
- <speciesReference constant="true" species="M_h_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_for_c" stoichiometry="1" />
- </listOfProducts>
- <fbc:geneProductAssociation>
- <fbc:or>
- <fbc:geneProductRef fbc:geneProduct="G_b0904" />
- <fbc:geneProductRef fbc:geneProduct="G_b2492" />
- </fbc:or>
- </fbc:geneProductAssociation>
- </reaction>
- <reaction fast="false" id="R_FORti" name="formate transport via diffusion" reversible="false" fbc:lowerFluxBound="cobra_0_bound" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_for_c" stoichiometry="1" />
- </listOfReactants>
- <listOfProducts>
- <speciesReference constant="true" species="M_for_e" stoichiometry="1" />
- </listOfProducts>
- <fbc:geneProductAssociation>
- <fbc:or>
- <fbc:geneProductRef fbc:geneProduct="G_b0904" />
- <fbc:geneProductRef fbc:geneProduct="G_b2492" />
- </fbc:or>
- </fbc:geneProductAssociation>
- </reaction>
- <reaction fast="false" id="R_FRD7" name="fumarate reductase" reversible="false" fbc:lowerFluxBound="cobra_0_bound" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_fum_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_q8h2_c" stoichiometry="1" />
- </listOfReactants>
- <listOfProducts>
- <speciesReference constant="true" species="M_succ_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_q8_c" stoichiometry="1" />
- </listOfProducts>
- <fbc:geneProductAssociation>
- <fbc:and>
- <fbc:geneProductRef fbc:geneProduct="G_b4151" />
- <fbc:geneProductRef fbc:geneProduct="G_b4154" />
- <fbc:geneProductRef fbc:geneProduct="G_b4153" />
- <fbc:geneProductRef fbc:geneProduct="G_b4152" />
- </fbc:and>
- </fbc:geneProductAssociation>
- </reaction>
- <reaction fast="false" id="R_FRUpts2" name="Fructose transport via PEP:Pyr PTS (f6p generating)" reversible="false" fbc:lowerFluxBound="cobra_0_bound" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_pep_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_fru_e" stoichiometry="1" />
- </listOfReactants>
- <listOfProducts>
- <speciesReference constant="true" species="M_pyr_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_f6p_c" stoichiometry="1" />
- </listOfProducts>
- <fbc:geneProductAssociation>
- <fbc:and>
- <fbc:geneProductRef fbc:geneProduct="G_b2415" />
- <fbc:geneProductRef fbc:geneProduct="G_b2416" />
- <fbc:geneProductRef fbc:geneProduct="G_b1818" />
- <fbc:geneProductRef fbc:geneProduct="G_b1817" />
- <fbc:geneProductRef fbc:geneProduct="G_b1819" />
- </fbc:and>
- </fbc:geneProductAssociation>
- </reaction>
- <reaction fast="false" id="R_FUM" name="fumarase" reversible="true" fbc:lowerFluxBound="cobra_default_lb" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_h2o_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_fum_c" stoichiometry="1" />
- </listOfReactants>
- <listOfProducts>
- <speciesReference constant="true" species="M_mal__L_c" stoichiometry="1" />
- </listOfProducts>
- <fbc:geneProductAssociation>
- <fbc:or>
- <fbc:geneProductRef fbc:geneProduct="G_b1612" />
- <fbc:geneProductRef fbc:geneProduct="G_b1611" />
- <fbc:geneProductRef fbc:geneProduct="G_b4122" />
- </fbc:or>
- </fbc:geneProductAssociation>
- </reaction>
- <reaction fast="false" id="R_FUMt2_2" name="Fumarate transport via proton symport (2 H)" reversible="false" fbc:lowerFluxBound="cobra_0_bound" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_h_e" stoichiometry="2" />
- <speciesReference constant="true" species="M_fum_e" stoichiometry="1" />
- </listOfReactants>
- <listOfProducts>
- <speciesReference constant="true" species="M_fum_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_h_c" stoichiometry="2" />
- </listOfProducts>
- <fbc:geneProductAssociation>
- <fbc:geneProductRef fbc:geneProduct="G_b3528" />
- </fbc:geneProductAssociation>
- </reaction>
- <reaction fast="false" id="R_G6PDH2r" name="glucose 6-phosphate dehydrogenase" reversible="true" fbc:lowerFluxBound="cobra_default_lb" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_g6p_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_nadp_c" stoichiometry="1" />
- </listOfReactants>
- <listOfProducts>
- <speciesReference constant="true" species="M_nadph_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_h_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_6pgl_c" stoichiometry="1" />
- </listOfProducts>
- <fbc:geneProductAssociation>
- <fbc:geneProductRef fbc:geneProduct="G_b1852" />
- </fbc:geneProductAssociation>
- </reaction>
- <reaction fast="false" id="R_GAPD" name="glyceraldehyde-3-phosphate dehydrogenase" reversible="true" fbc:lowerFluxBound="cobra_default_lb" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_pi_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_nad_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_g3p_c" stoichiometry="1" />
- </listOfReactants>
- <listOfProducts>
- <speciesReference constant="true" species="M_13dpg_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_h_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_nadh_c" stoichiometry="1" />
- </listOfProducts>
- <fbc:geneProductAssociation>
- <fbc:geneProductRef fbc:geneProduct="G_b1779" />
- </fbc:geneProductAssociation>
- </reaction>
- <reaction fast="false" id="R_GLCpts" name="D-glucose transport via PEP:Pyr PTS" reversible="false" fbc:lowerFluxBound="cobra_0_bound" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_pep_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_glc__D_e" stoichiometry="1" />
- </listOfReactants>
- <listOfProducts>
- <speciesReference constant="true" species="M_g6p_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_pyr_c" stoichiometry="1" />
- </listOfProducts>
- <fbc:geneProductAssociation>
- <fbc:or>
- <fbc:and>
- <fbc:geneProductRef fbc:geneProduct="G_b2415" />
- <fbc:geneProductRef fbc:geneProduct="G_b1621" />
- <fbc:geneProductRef fbc:geneProduct="G_b2417" />
- <fbc:geneProductRef fbc:geneProduct="G_b2416" />
- </fbc:and>
- <fbc:and>
- <fbc:geneProductRef fbc:geneProduct="G_b2415" />
- <fbc:geneProductRef fbc:geneProduct="G_b2416" />
- <fbc:geneProductRef fbc:geneProduct="G_b1818" />
- <fbc:geneProductRef fbc:geneProduct="G_b1819" />
- <fbc:geneProductRef fbc:geneProduct="G_b1817" />
- </fbc:and>
- <fbc:and>
- <fbc:geneProductRef fbc:geneProduct="G_b2415" />
- <fbc:geneProductRef fbc:geneProduct="G_b2417" />
- <fbc:geneProductRef fbc:geneProduct="G_b2416" />
- <fbc:geneProductRef fbc:geneProduct="G_b1101" />
- </fbc:and>
- </fbc:or>
- </fbc:geneProductAssociation>
- </reaction>
- <reaction fast="false" id="R_GLNS" name="glutamine synthetase" reversible="false" fbc:lowerFluxBound="cobra_0_bound" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_glu__L_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_atp_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_nh4_c" stoichiometry="1" />
- </listOfReactants>
- <listOfProducts>
- <speciesReference constant="true" species="M_pi_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_h_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_adp_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_gln__L_c" stoichiometry="1" />
- </listOfProducts>
- <fbc:geneProductAssociation>
- <fbc:or>
- <fbc:geneProductRef fbc:geneProduct="G_b3870" />
- <fbc:geneProductRef fbc:geneProduct="G_b1297" />
- </fbc:or>
- </fbc:geneProductAssociation>
- </reaction>
- <reaction fast="false" id="R_GLNabc" name="L-glutamine transport via ABC system" reversible="false" fbc:lowerFluxBound="cobra_0_bound" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_h2o_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_gln__L_e" stoichiometry="1" />
- <speciesReference constant="true" species="M_atp_c" stoichiometry="1" />
- </listOfReactants>
- <listOfProducts>
- <speciesReference constant="true" species="M_pi_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_h_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_adp_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_gln__L_c" stoichiometry="1" />
- </listOfProducts>
- <fbc:geneProductAssociation>
- <fbc:and>
- <fbc:geneProductRef fbc:geneProduct="G_b0811" />
- <fbc:geneProductRef fbc:geneProduct="G_b0810" />
- <fbc:geneProductRef fbc:geneProduct="G_b0809" />
- </fbc:and>
- </fbc:geneProductAssociation>
- </reaction>
- <reaction fast="false" id="R_GLUDy" name="glutamate dehydrogenase (NADP)" reversible="true" fbc:lowerFluxBound="cobra_default_lb" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_h2o_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_glu__L_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_nadp_c" stoichiometry="1" />
- </listOfReactants>
- <listOfProducts>
- <speciesReference constant="true" species="M_nadph_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_h_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_akg_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_nh4_c" stoichiometry="1" />
- </listOfProducts>
- <fbc:geneProductAssociation>
- <fbc:geneProductRef fbc:geneProduct="G_b1761" />
- </fbc:geneProductAssociation>
- </reaction>
- <reaction fast="false" id="R_GLUN" name="glutaminase" reversible="false" fbc:lowerFluxBound="cobra_0_bound" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_h2o_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_gln__L_c" stoichiometry="1" />
- </listOfReactants>
- <listOfProducts>
- <speciesReference constant="true" species="M_glu__L_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_nh4_c" stoichiometry="1" />
- </listOfProducts>
- <fbc:geneProductAssociation>
- <fbc:or>
- <fbc:geneProductRef fbc:geneProduct="G_b1812" />
- <fbc:geneProductRef fbc:geneProduct="G_b1524" />
- <fbc:geneProductRef fbc:geneProduct="G_b0485" />
- </fbc:or>
- </fbc:geneProductAssociation>
- </reaction>
- <reaction fast="false" id="R_GLUSy" name="glutamate synthase (NADPH)" reversible="false" fbc:lowerFluxBound="cobra_0_bound" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_nadph_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_h_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_gln__L_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_akg_c" stoichiometry="1" />
- </listOfReactants>
- <listOfProducts>
- <speciesReference constant="true" species="M_glu__L_c" stoichiometry="2" />
- <speciesReference constant="true" species="M_nadp_c" stoichiometry="1" />
- </listOfProducts>
- <fbc:geneProductAssociation>
- <fbc:and>
- <fbc:geneProductRef fbc:geneProduct="G_b3212" />
- <fbc:geneProductRef fbc:geneProduct="G_b3213" />
- </fbc:and>
- </fbc:geneProductAssociation>
- </reaction>
- <reaction fast="false" id="R_GLUt2r" name="L-glutamate transport via proton symport, reversible" reversible="true" fbc:lowerFluxBound="cobra_default_lb" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_h_e" stoichiometry="1" />
- <speciesReference constant="true" species="M_glu__L_e" stoichiometry="1" />
- </listOfReactants>
- <listOfProducts>
- <speciesReference constant="true" species="M_glu__L_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_h_c" stoichiometry="1" />
- </listOfProducts>
- <fbc:geneProductAssociation>
- <fbc:geneProductRef fbc:geneProduct="G_b4077" />
- </fbc:geneProductAssociation>
- </reaction>
- <reaction fast="false" id="R_GND" name="phosphogluconate dehydrogenase" reversible="false" fbc:lowerFluxBound="cobra_0_bound" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_nadp_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_6pgc_c" stoichiometry="1" />
- </listOfReactants>
- <listOfProducts>
- <speciesReference constant="true" species="M_co2_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_nadph_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_ru5p__D_c" stoichiometry="1" />
- </listOfProducts>
- <fbc:geneProductAssociation>
- <fbc:geneProductRef fbc:geneProduct="G_b2029" />
- </fbc:geneProductAssociation>
- </reaction>
- <reaction fast="false" id="R_H2Ot" name="H2O transport via diffusion" reversible="true" fbc:lowerFluxBound="cobra_default_lb" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_h2o_e" stoichiometry="1" />
- </listOfReactants>
- <listOfProducts>
- <speciesReference constant="true" species="M_h2o_c" stoichiometry="1" />
- </listOfProducts>
- <fbc:geneProductAssociation>
- <fbc:geneProductRef fbc:geneProduct="G_b0875" />
- </fbc:geneProductAssociation>
- </reaction>
- <reaction fast="false" id="R_ICDHyr" name="isocitrate dehydrogenase (NADP)" reversible="true" fbc:lowerFluxBound="cobra_default_lb" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_nadp_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_icit_c" stoichiometry="1" />
- </listOfReactants>
- <listOfProducts>
- <speciesReference constant="true" species="M_co2_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_akg_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_nadph_c" stoichiometry="1" />
- </listOfProducts>
- <fbc:geneProductAssociation>
- <fbc:geneProductRef fbc:geneProduct="G_b1136" />
- </fbc:geneProductAssociation>
- </reaction>
- <reaction fast="false" id="R_ICL" name="Isocitrate lyase" reversible="false" fbc:lowerFluxBound="cobra_0_bound" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_icit_c" stoichiometry="1" />
- </listOfReactants>
- <listOfProducts>
- <speciesReference constant="true" species="M_succ_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_glx_c" stoichiometry="1" />
- </listOfProducts>
- <fbc:geneProductAssociation>
- <fbc:geneProductRef fbc:geneProduct="G_b4015" />
- </fbc:geneProductAssociation>
- </reaction>
- <reaction fast="false" id="R_LDH_D" name="D-lactate dehydrogenase" reversible="true" fbc:lowerFluxBound="cobra_default_lb" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_nad_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_lac__D_c" stoichiometry="1" />
- </listOfReactants>
- <listOfProducts>
- <speciesReference constant="true" species="M_pyr_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_h_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_nadh_c" stoichiometry="1" />
- </listOfProducts>
- <fbc:geneProductAssociation>
- <fbc:or>
- <fbc:geneProductRef fbc:geneProduct="G_b1380" />
- <fbc:geneProductRef fbc:geneProduct="G_b2133" />
- </fbc:or>
- </fbc:geneProductAssociation>
- </reaction>
- <reaction fast="false" id="R_MALS" name="malate synthase" reversible="false" fbc:lowerFluxBound="cobra_0_bound" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_h2o_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_accoa_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_glx_c" stoichiometry="1" />
- </listOfReactants>
- <listOfProducts>
- <speciesReference constant="true" species="M_mal__L_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_h_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_coa_c" stoichiometry="1" />
- </listOfProducts>
- <fbc:geneProductAssociation>
- <fbc:or>
- <fbc:geneProductRef fbc:geneProduct="G_b2976" />
- <fbc:geneProductRef fbc:geneProduct="G_b4014" />
- </fbc:or>
- </fbc:geneProductAssociation>
- </reaction>
- <reaction fast="false" id="R_MALt2_2" name="Malate transport via proton symport (2 H)" reversible="false" fbc:lowerFluxBound="cobra_0_bound" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_h_e" stoichiometry="2" />
- <speciesReference constant="true" species="M_mal__L_e" stoichiometry="1" />
- </listOfReactants>
- <listOfProducts>
- <speciesReference constant="true" species="M_mal__L_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_h_c" stoichiometry="2" />
- </listOfProducts>
- <fbc:geneProductAssociation>
- <fbc:geneProductRef fbc:geneProduct="G_b3528" />
- </fbc:geneProductAssociation>
- </reaction>
- <reaction fast="false" id="R_MDH" name="malate dehydrogenase" reversible="true" fbc:lowerFluxBound="cobra_default_lb" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_mal__L_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_nad_c" stoichiometry="1" />
- </listOfReactants>
- <listOfProducts>
- <speciesReference constant="true" species="M_h_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_oaa_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_nadh_c" stoichiometry="1" />
- </listOfProducts>
- <fbc:geneProductAssociation>
- <fbc:geneProductRef fbc:geneProduct="G_b3236" />
- </fbc:geneProductAssociation>
- </reaction>
- <reaction fast="false" id="R_ME1" name="malic enzyme (NAD)" reversible="false" fbc:lowerFluxBound="cobra_0_bound" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_mal__L_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_nad_c" stoichiometry="1" />
- </listOfReactants>
- <listOfProducts>
- <speciesReference constant="true" species="M_pyr_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_co2_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_nadh_c" stoichiometry="1" />
- </listOfProducts>
- <fbc:geneProductAssociation>
- <fbc:geneProductRef fbc:geneProduct="G_b1479" />
- </fbc:geneProductAssociation>
- </reaction>
- <reaction fast="false" id="R_ME2" name="malic enzyme (NADP)" reversible="false" fbc:lowerFluxBound="cobra_0_bound" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_mal__L_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_nadp_c" stoichiometry="1" />
- </listOfReactants>
- <listOfProducts>
- <speciesReference constant="true" species="M_pyr_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_co2_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_nadph_c" stoichiometry="1" />
- </listOfProducts>
- <fbc:geneProductAssociation>
- <fbc:geneProductRef fbc:geneProduct="G_b2463" />
- </fbc:geneProductAssociation>
- </reaction>
- <reaction fast="false" id="R_NADH16" name="NADH dehydrogenase (ubiquinone-8 & 3 protons)" reversible="false" fbc:lowerFluxBound="cobra_0_bound" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_h_c" stoichiometry="4" />
- <speciesReference constant="true" species="M_nadh_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_q8_c" stoichiometry="1" />
- </listOfReactants>
- <listOfProducts>
- <speciesReference constant="true" species="M_nad_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_h_e" stoichiometry="3" />
- <speciesReference constant="true" species="M_q8h2_c" stoichiometry="1" />
- </listOfProducts>
- <fbc:geneProductAssociation>
- <fbc:and>
- <fbc:geneProductRef fbc:geneProduct="G_b2285" />
- <fbc:geneProductRef fbc:geneProduct="G_b2284" />
- <fbc:geneProductRef fbc:geneProduct="G_b2281" />
- <fbc:geneProductRef fbc:geneProduct="G_b2287" />
- <fbc:geneProductRef fbc:geneProduct="G_b2276" />
- <fbc:geneProductRef fbc:geneProduct="G_b2283" />
- <fbc:geneProductRef fbc:geneProduct="G_b2288" />
- <fbc:geneProductRef fbc:geneProduct="G_b2282" />
- <fbc:geneProductRef fbc:geneProduct="G_b2286" />
- <fbc:geneProductRef fbc:geneProduct="G_b2277" />
- <fbc:geneProductRef fbc:geneProduct="G_b2278" />
- <fbc:geneProductRef fbc:geneProduct="G_b2280" />
- <fbc:geneProductRef fbc:geneProduct="G_b2279" />
- </fbc:and>
- </fbc:geneProductAssociation>
- </reaction>
- <reaction fast="false" id="R_NADTRHD" name="NAD transhydrogenase" reversible="false" fbc:lowerFluxBound="cobra_0_bound" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_nadph_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_nad_c" stoichiometry="1" />
- </listOfReactants>
- <listOfProducts>
- <speciesReference constant="true" species="M_nadh_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_nadp_c" stoichiometry="1" />
- </listOfProducts>
- <fbc:geneProductAssociation>
- <fbc:or>
- <fbc:and>
- <fbc:geneProductRef fbc:geneProduct="G_b1602" />
- <fbc:geneProductRef fbc:geneProduct="G_b1603" />
- </fbc:and>
- <fbc:geneProductRef fbc:geneProduct="G_b3962" />
- </fbc:or>
- </fbc:geneProductAssociation>
- </reaction>
- <reaction fast="false" id="R_NH4t" name="ammonia reversible transport" reversible="true" fbc:lowerFluxBound="cobra_default_lb" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_nh4_e" stoichiometry="1" />
- </listOfReactants>
- <listOfProducts>
- <speciesReference constant="true" species="M_nh4_c" stoichiometry="1" />
- </listOfProducts>
- <fbc:geneProductAssociation>
- <fbc:geneProductRef fbc:geneProduct="G_b0451" />
- </fbc:geneProductAssociation>
- </reaction>
- <reaction fast="false" id="R_O2t" name="o2 transport (diffusion)" reversible="true" fbc:lowerFluxBound="cobra_default_lb" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_o2_e" stoichiometry="1" />
- </listOfReactants>
- <listOfProducts>
- <speciesReference constant="true" species="M_o2_c" stoichiometry="1" />
- </listOfProducts>
- <fbc:geneProductAssociation>
- <fbc:geneProductRef fbc:geneProduct="G_s0001" />
- </fbc:geneProductAssociation>
- </reaction>
- <reaction fast="false" id="R_PDH" name="pyruvate dehydrogenase" reversible="false" fbc:lowerFluxBound="cobra_0_bound" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_pyr_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_nad_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_coa_c" stoichiometry="1" />
- </listOfReactants>
- <listOfProducts>
- <speciesReference constant="true" species="M_accoa_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_co2_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_nadh_c" stoichiometry="1" />
- </listOfProducts>
- <fbc:geneProductAssociation>
- <fbc:and>
- <fbc:geneProductRef fbc:geneProduct="G_b0114" />
- <fbc:geneProductRef fbc:geneProduct="G_b0116" />
- <fbc:geneProductRef fbc:geneProduct="G_b0115" />
- </fbc:and>
- </fbc:geneProductAssociation>
- </reaction>
- <reaction fast="false" id="R_PFK" name="phosphofructokinase" reversible="false" fbc:lowerFluxBound="cobra_0_bound" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_atp_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_f6p_c" stoichiometry="1" />
- </listOfReactants>
- <listOfProducts>
- <speciesReference constant="true" species="M_h_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_adp_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_fdp_c" stoichiometry="1" />
- </listOfProducts>
- <fbc:geneProductAssociation>
- <fbc:or>
- <fbc:geneProductRef fbc:geneProduct="G_b3916" />
- <fbc:geneProductRef fbc:geneProduct="G_b1723" />
- </fbc:or>
- </fbc:geneProductAssociation>
- </reaction>
- <reaction fast="false" id="R_PFL" name="pyruvate formate lyase" reversible="false" fbc:lowerFluxBound="cobra_0_bound" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_pyr_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_coa_c" stoichiometry="1" />
- </listOfReactants>
- <listOfProducts>
- <speciesReference constant="true" species="M_accoa_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_for_c" stoichiometry="1" />
- </listOfProducts>
- <fbc:geneProductAssociation>
- <fbc:or>
- <fbc:and>
- <fbc:geneProductRef fbc:geneProduct="G_b3951" />
- <fbc:geneProductRef fbc:geneProduct="G_b3952" />
- </fbc:and>
- <fbc:and>
- <fbc:geneProductRef fbc:geneProduct="G_b2579" />
- <fbc:and>
- <fbc:geneProductRef fbc:geneProduct="G_b0902" />
- <fbc:geneProductRef fbc:geneProduct="G_b0903" />
- </fbc:and>
- </fbc:and>
- <fbc:and>
- <fbc:geneProductRef fbc:geneProduct="G_b0902" />
- <fbc:geneProductRef fbc:geneProduct="G_b3114" />
- </fbc:and>
- <fbc:and>
- <fbc:geneProductRef fbc:geneProduct="G_b0902" />
- <fbc:geneProductRef fbc:geneProduct="G_b0903" />
- </fbc:and>
- </fbc:or>
- </fbc:geneProductAssociation>
- </reaction>
- <reaction fast="false" id="R_PGI" name="glucose-6-phosphate isomerase" reversible="true" fbc:lowerFluxBound="cobra_default_lb" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_g6p_c" stoichiometry="1" />
- </listOfReactants>
- <listOfProducts>
- <speciesReference constant="true" species="M_f6p_c" stoichiometry="1" />
- </listOfProducts>
- <fbc:geneProductAssociation>
- <fbc:geneProductRef fbc:geneProduct="G_b4025" />
- </fbc:geneProductAssociation>
- </reaction>
- <reaction fast="false" id="R_PGK" name="phosphoglycerate kinase" reversible="true" fbc:lowerFluxBound="cobra_default_lb" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_atp_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_3pg_c" stoichiometry="1" />
- </listOfReactants>
- <listOfProducts>
- <speciesReference constant="true" species="M_13dpg_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_adp_c" stoichiometry="1" />
- </listOfProducts>
- <fbc:geneProductAssociation>
- <fbc:geneProductRef fbc:geneProduct="G_b2926" />
- </fbc:geneProductAssociation>
- </reaction>
- <reaction fast="false" id="R_PGL" name="6-phosphogluconolactonase" reversible="false" fbc:lowerFluxBound="cobra_0_bound" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_h2o_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_6pgl_c" stoichiometry="1" />
- </listOfReactants>
- <listOfProducts>
- <speciesReference constant="true" species="M_h_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_6pgc_c" stoichiometry="1" />
- </listOfProducts>
- <fbc:geneProductAssociation>
- <fbc:geneProductRef fbc:geneProduct="G_b0767" />
- </fbc:geneProductAssociation>
- </reaction>
- <reaction fast="false" id="R_PGM" name="phosphoglycerate mutase" reversible="true" fbc:lowerFluxBound="cobra_default_lb" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_2pg_c" stoichiometry="1" />
- </listOfReactants>
- <listOfProducts>
- <speciesReference constant="true" species="M_3pg_c" stoichiometry="1" />
- </listOfProducts>
- <fbc:geneProductAssociation>
- <fbc:or>
- <fbc:geneProductRef fbc:geneProduct="G_b4395" />
- <fbc:geneProductRef fbc:geneProduct="G_b3612" />
- <fbc:geneProductRef fbc:geneProduct="G_b0755" />
- </fbc:or>
- </fbc:geneProductAssociation>
- </reaction>
- <reaction fast="false" id="R_PIt2r" name="phosphate reversible transport via symport" reversible="true" fbc:lowerFluxBound="cobra_default_lb" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_h_e" stoichiometry="1" />
- <speciesReference constant="true" species="M_pi_e" stoichiometry="1" />
- </listOfReactants>
- <listOfProducts>
- <speciesReference constant="true" species="M_pi_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_h_c" stoichiometry="1" />
- </listOfProducts>
- <fbc:geneProductAssociation>
- <fbc:or>
- <fbc:geneProductRef fbc:geneProduct="G_b2987" />
- <fbc:geneProductRef fbc:geneProduct="G_b3493" />
- </fbc:or>
- </fbc:geneProductAssociation>
- </reaction>
- <reaction fast="false" id="R_PPC" name="phosphoenolpyruvate carboxylase" reversible="false" fbc:lowerFluxBound="cobra_0_bound" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_h2o_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_co2_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_pep_c" stoichiometry="1" />
- </listOfReactants>
- <listOfProducts>
- <speciesReference constant="true" species="M_pi_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_h_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_oaa_c" stoichiometry="1" />
- </listOfProducts>
- <fbc:geneProductAssociation>
- <fbc:geneProductRef fbc:geneProduct="G_b3956" />
- </fbc:geneProductAssociation>
- </reaction>
- <reaction fast="false" id="R_PPCK" name="phosphoenolpyruvate carboxykinase" reversible="false" fbc:lowerFluxBound="cobra_0_bound" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_atp_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_oaa_c" stoichiometry="1" />
- </listOfReactants>
- <listOfProducts>
- <speciesReference constant="true" species="M_co2_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_pep_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_adp_c" stoichiometry="1" />
- </listOfProducts>
- <fbc:geneProductAssociation>
- <fbc:geneProductRef fbc:geneProduct="G_b3403" />
- </fbc:geneProductAssociation>
- </reaction>
- <reaction fast="false" id="R_PPS" name="phosphoenolpyruvate synthase" reversible="false" fbc:lowerFluxBound="cobra_0_bound" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_h2o_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_pyr_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_atp_c" stoichiometry="1" />
- </listOfReactants>
- <listOfProducts>
- <speciesReference constant="true" species="M_pi_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_pep_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_h_c" stoichiometry="2" />
- <speciesReference constant="true" species="M_amp_c" stoichiometry="1" />
- </listOfProducts>
- <fbc:geneProductAssociation>
- <fbc:geneProductRef fbc:geneProduct="G_b1702" />
- </fbc:geneProductAssociation>
- </reaction>
- <reaction fast="false" id="R_PTAr" name="phosphotransacetylase" reversible="true" fbc:lowerFluxBound="cobra_default_lb" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_accoa_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_pi_c" stoichiometry="1" />
- </listOfReactants>
- <listOfProducts>
- <speciesReference constant="true" species="M_actp_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_coa_c" stoichiometry="1" />
- </listOfProducts>
- <fbc:geneProductAssociation>
- <fbc:or>
- <fbc:geneProductRef fbc:geneProduct="G_b2297" />
- <fbc:geneProductRef fbc:geneProduct="G_b2458" />
- </fbc:or>
- </fbc:geneProductAssociation>
- </reaction>
- <reaction fast="false" id="R_PYK" name="pyruvate kinase" reversible="false" fbc:lowerFluxBound="cobra_0_bound" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_pep_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_h_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_adp_c" stoichiometry="1" />
- </listOfReactants>
- <listOfProducts>
- <speciesReference constant="true" species="M_pyr_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_atp_c" stoichiometry="1" />
- </listOfProducts>
- <fbc:geneProductAssociation>
- <fbc:or>
- <fbc:geneProductRef fbc:geneProduct="G_b1854" />
- <fbc:geneProductRef fbc:geneProduct="G_b1676" />
- </fbc:or>
- </fbc:geneProductAssociation>
- </reaction>
- <reaction fast="false" id="R_PYRt2r" name="pyruvate reversible transport via proton symport" reversible="true" fbc:lowerFluxBound="cobra_default_lb" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_h_e" stoichiometry="1" />
- <speciesReference constant="true" species="M_pyr_e" stoichiometry="1" />
- </listOfReactants>
- <listOfProducts>
- <speciesReference constant="true" species="M_pyr_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_h_c" stoichiometry="1" />
- </listOfProducts>
- </reaction>
- <reaction fast="false" id="R_RPE" name="ribulose 5-phosphate 3-epimerase" reversible="true" fbc:lowerFluxBound="cobra_default_lb" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_ru5p__D_c" stoichiometry="1" />
- </listOfReactants>
- <listOfProducts>
- <speciesReference constant="true" species="M_xu5p__D_c" stoichiometry="1" />
- </listOfProducts>
- <fbc:geneProductAssociation>
- <fbc:or>
- <fbc:geneProductRef fbc:geneProduct="G_b3386" />
- <fbc:geneProductRef fbc:geneProduct="G_b4301" />
- </fbc:or>
- </fbc:geneProductAssociation>
- </reaction>
- <reaction fast="false" id="R_RPI" name="ribose-5-phosphate isomerase" reversible="true" fbc:lowerFluxBound="cobra_default_lb" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_r5p_c" stoichiometry="1" />
- </listOfReactants>
- <listOfProducts>
- <speciesReference constant="true" species="M_ru5p__D_c" stoichiometry="1" />
- </listOfProducts>
- <fbc:geneProductAssociation>
- <fbc:or>
- <fbc:geneProductRef fbc:geneProduct="G_b2914" />
- <fbc:geneProductRef fbc:geneProduct="G_b4090" />
- </fbc:or>
- </fbc:geneProductAssociation>
- </reaction>
- <reaction fast="false" id="R_SUCCt2_2" name="succinate transport via proton symport (2 H)" reversible="false" fbc:lowerFluxBound="cobra_0_bound" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_succ_e" stoichiometry="1" />
- <speciesReference constant="true" species="M_h_e" stoichiometry="2" />
- </listOfReactants>
- <listOfProducts>
- <speciesReference constant="true" species="M_h_c" stoichiometry="2" />
- <speciesReference constant="true" species="M_succ_c" stoichiometry="1" />
- </listOfProducts>
- <fbc:geneProductAssociation>
- <fbc:geneProductRef fbc:geneProduct="G_b3528" />
- </fbc:geneProductAssociation>
- </reaction>
- <reaction fast="false" id="R_SUCCt3" name="succinate transport out via proton antiport" reversible="false" fbc:lowerFluxBound="cobra_0_bound" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_succ_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_h_e" stoichiometry="1" />
- </listOfReactants>
- <listOfProducts>
- <speciesReference constant="true" species="M_succ_e" stoichiometry="1" />
- <speciesReference constant="true" species="M_h_c" stoichiometry="1" />
- </listOfProducts>
- </reaction>
- <reaction fast="false" id="R_SUCDi" name="succinate dehydrogenase (irreversible)" reversible="false" fbc:lowerFluxBound="cobra_0_bound" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_succ_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_q8_c" stoichiometry="1" />
- </listOfReactants>
- <listOfProducts>
- <speciesReference constant="true" species="M_fum_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_q8h2_c" stoichiometry="1" />
- </listOfProducts>
- <fbc:geneProductAssociation>
- <fbc:and>
- <fbc:geneProductRef fbc:geneProduct="G_b0722" />
- <fbc:geneProductRef fbc:geneProduct="G_b0721" />
- <fbc:geneProductRef fbc:geneProduct="G_b0723" />
- <fbc:geneProductRef fbc:geneProduct="G_b0724" />
- </fbc:and>
- </fbc:geneProductAssociation>
- </reaction>
- <reaction fast="false" id="R_SUCOAS" name="succinyl-CoA synthetase (ADP-forming)" reversible="true" fbc:lowerFluxBound="cobra_default_lb" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_atp_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_succ_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_coa_c" stoichiometry="1" />
- </listOfReactants>
- <listOfProducts>
- <speciesReference constant="true" species="M_pi_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_adp_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_succoa_c" stoichiometry="1" />
- </listOfProducts>
- <fbc:geneProductAssociation>
- <fbc:and>
- <fbc:geneProductRef fbc:geneProduct="G_b0728" />
- <fbc:geneProductRef fbc:geneProduct="G_b0729" />
- </fbc:and>
- </fbc:geneProductAssociation>
- </reaction>
- <reaction fast="false" id="R_TALA" name="transaldolase" reversible="true" fbc:lowerFluxBound="cobra_default_lb" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_s7p_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_g3p_c" stoichiometry="1" />
- </listOfReactants>
- <listOfProducts>
- <speciesReference constant="true" species="M_e4p_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_f6p_c" stoichiometry="1" />
- </listOfProducts>
- <fbc:geneProductAssociation>
- <fbc:or>
- <fbc:geneProductRef fbc:geneProduct="G_b0008" />
- <fbc:geneProductRef fbc:geneProduct="G_b2464" />
- </fbc:or>
- </fbc:geneProductAssociation>
- </reaction>
- <reaction fast="false" id="R_THD2" name="NAD(P) transhydrogenase" reversible="false" fbc:lowerFluxBound="cobra_0_bound" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_nadh_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_h_e" stoichiometry="2" />
- <speciesReference constant="true" species="M_nadp_c" stoichiometry="1" />
- </listOfReactants>
- <listOfProducts>
- <speciesReference constant="true" species="M_nadph_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_h_c" stoichiometry="2" />
- <speciesReference constant="true" species="M_nad_c" stoichiometry="1" />
- </listOfProducts>
- <fbc:geneProductAssociation>
- <fbc:and>
- <fbc:geneProductRef fbc:geneProduct="G_b1602" />
- <fbc:geneProductRef fbc:geneProduct="G_b1603" />
- </fbc:and>
- </fbc:geneProductAssociation>
- </reaction>
- <reaction fast="false" id="R_TKT1" name="transketolase" reversible="true" fbc:lowerFluxBound="cobra_default_lb" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_r5p_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_xu5p__D_c" stoichiometry="1" />
- </listOfReactants>
- <listOfProducts>
- <speciesReference constant="true" species="M_s7p_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_g3p_c" stoichiometry="1" />
- </listOfProducts>
- <fbc:geneProductAssociation>
- <fbc:or>
- <fbc:geneProductRef fbc:geneProduct="G_b2935" />
- <fbc:geneProductRef fbc:geneProduct="G_b2465" />
- </fbc:or>
- </fbc:geneProductAssociation>
- </reaction>
- <reaction fast="false" id="R_TKT2" name="transketolase" reversible="true" fbc:lowerFluxBound="cobra_default_lb" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_e4p_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_xu5p__D_c" stoichiometry="1" />
- </listOfReactants>
- <listOfProducts>
- <speciesReference constant="true" species="M_f6p_c" stoichiometry="1" />
- <speciesReference constant="true" species="M_g3p_c" stoichiometry="1" />
- </listOfProducts>
- <fbc:geneProductAssociation>
- <fbc:or>
- <fbc:geneProductRef fbc:geneProduct="G_b2935" />
- <fbc:geneProductRef fbc:geneProduct="G_b2465" />
- </fbc:or>
- </fbc:geneProductAssociation>
- </reaction>
- <reaction fast="false" id="R_TPI" name="triose-phosphate isomerase" reversible="true" fbc:lowerFluxBound="cobra_default_lb" fbc:upperFluxBound="cobra_default_ub">
- <listOfReactants>
- <speciesReference constant="true" species="M_dhap_c" stoichiometry="1" />
- </listOfReactants>
- <listOfProducts>
- <speciesReference constant="true" species="M_g3p_c" stoichiometry="1" />
- </listOfProducts>
- <fbc:geneProductAssociation>
- <fbc:geneProductRef fbc:geneProduct="G_b3919" />
- </fbc:geneProductAssociation>
- </reaction>
- </listOfReactions>
- </model>
-</sbml>
diff --git a/cobra/test/data/textbook.xml.gz b/cobra/test/data/textbook.xml.gz
new file mode 100644
index 0000000..b61570f
Binary files /dev/null and b/cobra/test/data/textbook.xml.gz differ
diff --git a/cobra/test/data/textbook_fva.json b/cobra/test/data/textbook_fva.json
new file mode 100644
index 0000000..c4c8438
--- /dev/null
+++ b/cobra/test/data/textbook_fva.json
@@ -0,0 +1 @@
+{"ACALD": {"minimum": 0.0, "maximum": 0.0}, "ACALDt": {"minimum": 0.0, "maximum": -0.0}, "ACKr": {"minimum": 0.0, "maximum": -0.0}, "ACONTa": {"minimum": 6.00725, "maximum": 6.00725}, "ACONTb": {"minimum": 6.00725, "maximum": 6.00725}, "ACt2r": {"minimum": 0.0, "maximum": 0.0}, "ADK1": {"minimum": 0.0, "maximum": -0.0}, "AKGDH": {"minimum": 5.06438, "maximum": 5.06438}, "AKGt2r": {"minimum": 0.0, "maximum": 0.0}, "ALCD2x": {"minimum": 0.0, "maximum": 0.0}, "ATPM": {"minimum": 8.39, "maxi [...]
\ No newline at end of file
diff --git a/cobra/test/data/update_pickles.py b/cobra/test/data/update_pickles.py
index ddbaf99..807a27e 100755
--- a/cobra/test/data/update_pickles.py
+++ b/cobra/test/data/update_pickles.py
@@ -6,39 +6,86 @@ try:
except:
from pickle import load, dump
-from os.path import isfile
+from json import dump as json_dump
+from collections import OrderedDict
-from cobra import Model
+import cobra
from cobra.version import get_version
-from cobra.io import read_sbml_model, read_legacy_sbml, write_sbml_model
-from cobra.io import save_matlab_model, save_json_model
-from cobra.test import create_test_model
-
-model_names = ['salmonella', 'iJO1366']
-
-for model_name in model_names:
- # read in old pickle and model from sbml
- model_pickle = model_name + '.pickle'
- if model_name == "iJO1366":
- new_model = read_legacy_sbml(model_name + '.xml')
- else:
- new_model = read_sbml_model(model_name + '.xml')
- # update other attributes
- if isfile(model_name + ".genes"):
- with open(model_name + ".genes", "rb") as infile:
- gene_names = load(infile)
- for gene in new_model.genes:
- gene.name = gene_names[gene.id]
- if isfile(model_name + ".media"):
- with open(model_name + ".media", "rb") as infile:
- new_model.media_compositions = load(infile)
- new_model._cobra_version = get_version()
- # write out new pickle
- with open(model_pickle, 'wb') as outfile:
- dump(new_model, outfile, protocol=2)
- # write out other formats for iJO1366
- if model_name == "iJO1366":
- save_matlab_model(new_model, model_name + ".mat")
- save_json_model(new_model, model_name + ".json")
- if model_name == "salmonella":
- write_sbml_model(new_model, model_name + "_fbc.xml")
+from cobra.io import read_sbml_model, write_sbml_model, save_matlab_model, \
+ save_json_model
+from cobra.io.sbml3 import write_sbml2
+
+# ecoli
+ecoli_model = read_sbml_model("iJO1366.xml")
+with open("iJO1366.pickle", "wb") as outfile:
+ dump(ecoli_model, outfile, protocol=2)
+
+# salmonella
+salmonella = read_sbml_model("salmonella.xml")
+with open("salmonella.genes", "rb") as infile:
+ gene_names = load(infile)
+for gene in salmonella.genes:
+ gene.name = gene_names[gene.id]
+with open("salmonella.media", "rb") as infile:
+ salmonella.media_compositions = load(infile)
+with open("salmonella.pickle", "wb") as outfile:
+ dump(salmonella, outfile, protocol=2)
+
+# create mini model from textbook
+textbook = read_sbml_model("textbook.xml.gz")
+mini = cobra.Model("mini_textbook")
+mini.compartments = textbook.compartments
+
+
+for r in textbook.reactions:
+ if r.id in ("GLCpts", "PGI", "PFK", "FBA", "TPI", "GAPD", "PGK", "PGM",
+ "ENO", "PYK", "EX_glc__D_e", "EX_h_e", "H2Ot", "ATPM",
+ "PIt2r"):
+ mini.add_reaction(r.copy())
+mini.reactions.ATPM.upper_bound = mini.reactions.PGI.upper_bound
+mini.change_objective("ATPM") # No biomass
+
+# add in some information from iJO1366
+mini.add_reaction(ecoli_model.reactions.LDH_D.copy())
+mini.add_reaction(ecoli_model.reactions.EX_lac__D_e.copy())
+r = cobra.Reaction("D_LACt2")
+mini.add_reaction(r)
+r.gene_reaction_rule = ecoli_model.reactions.D__LACt2pp.gene_reaction_rule
+r.reaction = ecoli_model.reactions.D__LACt2pp.reaction.replace("_p", "_e")
+mini.reactions.GLCpts.gene_reaction_rule = \
+ ecoli_model.reactions.GLCptspp.gene_reaction_rule
+
+# adjust bounds
+for i in ["ATPM", "D_LACt2", "EX_lac__D_e", "LDH_D"]:
+ mini.reactions.get_by_id(i).upper_bound = mini.reactions.PGI.upper_bound
+for i in ["D_LACt2", "LDH_D"]:
+ mini.reactions.get_by_id(i).lower_bound = mini.reactions.PGI.lower_bound
+# set names and annotation
+for g in mini.genes:
+ try:
+ tg = textbook.genes.get_by_id(g.id)
+ except KeyError:
+ continue
+ g.name = tg.name
+ g.annotation = tg.annotation
+mini.reactions.sort()
+mini.genes.sort()
+mini.metabolites.sort()
+# output to various formats
+with open("mini.pickle", "wb") as outfile:
+ dump(mini, outfile, protocol=2)
+save_matlab_model(mini, "mini.mat")
+save_json_model(mini, "mini.json", pretty=True)
+write_sbml_model(mini, "mini_fbc2.xml")
+write_sbml_model(mini, "mini_fbc2.xml.bz2")
+write_sbml_model(mini, "mini_fbc2.xml.gz")
+write_sbml2(mini, "mini_fbc1.xml", use_fbc_package=True)
+write_sbml_model(mini, "mini_cobra.xml", use_fbc_package=False)
+
+# fva results
+fva_result = cobra.flux_analysis.flux_variability_analysis(textbook)
+clean_result = OrderedDict()
+for key in sorted(fva_result):
+ clean_result[key] = {k: round(v, 5) for k, v in fva_result[key].items()}
+with open("textbook_fva.json", "w") as outfile:
+ json_dump(clean_result, outfile)
diff --git a/cobra/test/flux_analysis.py b/cobra/test/flux_analysis.py
index b10e0aa..2fd2edf 100644
--- a/cobra/test/flux_analysis.py
+++ b/cobra/test/flux_analysis.py
@@ -2,7 +2,8 @@ from unittest import TestCase, TestLoader, TextTestRunner, skipIf
from warnings import warn
import sys
-from os import name
+from os.path import join
+from json import load
from six import iteritems
@@ -13,7 +14,7 @@ except:
if __name__ == "__main__":
sys.path.insert(0, "../..")
- from cobra.test import create_test_model
+ from cobra.test import create_test_model, data_directory
from cobra import Model, Reaction, Metabolite
from cobra.manipulation import initialize_growth_medium
from cobra.solvers import solver_dict, get_solver_name
@@ -21,7 +22,7 @@ if __name__ == "__main__":
from cobra.flux_analysis import *
sys.path.pop(0)
else:
- from . import create_test_model
+ from . import create_test_model, data_directory
from .. import Model, Reaction, Metabolite
from ..manipulation import initialize_growth_medium
from ..solvers import solver_dict, get_solver_name
@@ -67,6 +68,13 @@ class TestCobraFluxAnalysis(TestCase):
modify.convert_to_irreversible(model4)
modify.revert_to_reversible(model4)
+ def test_escape_ids(self):
+ model = create_test_model('textbook')
+ model.reactions.PGI.gene_reaction_rule = "a.b or c"
+ self.assertIn("a.b", model.genes)
+ modify.escape_ID(model)
+ self.assertNotIn("a.b", model.genes)
+
def test_gene_knockout_computation(self):
cobra_model = create_test_model()
@@ -149,7 +157,7 @@ class TestCobraFluxAnalysis(TestCase):
# expected knockouts for textbook model
growth_dict = {"fba": {"b0008": 0.87, "b0114": 0.80, "b0116": 0.78,
"b2276": 0.21, "b1779": 0.00},
- "moma": {"b0008": 0.87, "b0114": 0.73, "b0116": 0.59,
+ "moma": {"b0008": 0.87, "b0114": 0.71, "b0116": 0.56,
"b2276": 0.11, "b1779": 0.00},
}
@@ -233,40 +241,8 @@ class TestCobraFluxAnalysis(TestCase):
self.compare_matrices(growth_list, solution["data"])
def test_flux_variability(self):
- fva_results = {
- 'ACALDt': {'minimum': 0.00000, 'maximum': 0.00000},
- 'ACONTb': {'minimum': 6.00725, 'maximum': 6.00725},
- 'AKGDH': {'minimum': 5.06438, 'maximum': 5.06438},
- 'ATPM': {'minimum': 8.39000, 'maximum': 8.39000},
- 'CO2t': {'minimum': -22.80983, 'maximum': -22.80983},
- 'D_LACt2': {'minimum': 0.00000, 'maximum': -0.00000},
- 'EX_ac_e': {'minimum': 0.00000, 'maximum': -0.00000},
- 'EX_co2_e': {'minimum': 22.80983, 'maximum': 22.80983},
- 'EX_fru_e': {'minimum': 0.00000, 'maximum': -0.00000},
- 'EX_gln__L_e': {'minimum': 0.00000, 'maximum': 0.00000},
- 'EX_h_e': {'minimum': 17.53087, 'maximum': 17.53087},
- 'EX_nh4_e': {'minimum': -4.76532, 'maximum': -4.76532},
- 'EX_pyr_e': {'minimum': 0.00000, 'maximum': -0.00000},
- 'FBP': {'minimum': 0.00000, 'maximum': -0.00000},
- 'FRD7': {'minimum': 0.00000, 'maximum': 994.93562},
- 'FUMt2_2': {'minimum': 0.00000, 'maximum': 0.00000},
- 'GLCpts': {'minimum': 10.00000, 'maximum': 10.00000},
- 'GLUDy': {'minimum': -4.54186, 'maximum': -4.54186},
- 'GLUt2r': {'minimum': 0.00000, 'maximum': -0.00000},
- 'ICDHyr': {'minimum': 6.00725, 'maximum': 6.00725},
- 'MALS': {'minimum': 0.00000, 'maximum': -0.00000},
- 'ME1': {'minimum': 0.00000, 'maximum': -0.00000},
- 'NADTRHD': {'minimum': 0.00000, 'maximum': -0.00000},
- 'PDH': {'minimum': 9.28253, 'maximum': 9.28253},
- 'PGI': {'minimum': 4.86086, 'maximum': 4.86086},
- 'PGM': {'minimum': -14.71614, 'maximum': -14.71614},
- 'PPCK': {'minimum': 0.00000, 'maximum': -0.00000},
- 'PYK': {'minimum': 1.75818, 'maximum': 1.75818},
- 'RPI': {'minimum': -2.28150, 'maximum': -2.28150},
- 'SUCDi': {'minimum': 5.06438, 'maximum': 1000.00000},
- 'THD2': {'minimum': 0.00000, 'maximum': -0.00000},
- 'TPI': {'minimum': 7.47738, 'maximum': 7.47738},
- }
+ with open(join(data_directory, "textbook_fva.json"), "r") as infile:
+ fva_results = load(infile)
infeasible_model = create_test_model("textbook")
infeasible_model.reactions.get_by_id("EX_glc__D_e").lower_bound = 0
diff --git a/cobra/test/io_tests.py b/cobra/test/io_tests.py
index fe97398..515d28c 100644
--- a/cobra/test/io_tests.py
+++ b/cobra/test/io_tests.py
@@ -1,4 +1,4 @@
-from warnings import catch_warnings
+from warnings import catch_warnings, warn
from tempfile import gettempdir
from os import unlink
from os.path import join, split
@@ -14,7 +14,7 @@ else:
from .. import io
from . import data_directory
-libraries = ["scipy", "libsbml", "cPickle"]
+libraries = ["scipy", "libsbml", "cPickle", "jsonschema"]
for library in libraries:
try:
exec("import %s" % library)
@@ -51,11 +51,32 @@ class TestCobraIO(object):
len(model2.reactions[14].metabolites))
self.assertEqual(len(model1.reactions[-1].metabolites),
len(model2.reactions[-1].metabolites))
+ self.assertEqual(len(model1.genes), len(model2.genes))
# ensure they have the same solution max
model1.optimize()
model2.optimize()
self.assertAlmostEqual(model1.solution.f, model2.solution.f,
places=3)
+ self.extra_comparisons(model1, model2)
+
+ def extra_comparisons(self, model1, model2):
+ # Overriding this prevents these extra comparisons. For example, mat
+ # will need to skip this.
+ self.assertEqual(model1.compartments, model2.compartments)
+ self.assertEqual(model1.metabolites[4].annotation,
+ model2.metabolites[4].annotation)
+ self.assertEqual(model1.reactions[4].annotation,
+ model2.reactions[4].annotation)
+ self.assertEqual(model1.genes[4].annotation,
+ model2.genes[4].annotation)
+ for attr in ("id", "name"):
+ self.assertEqual(getattr(model1.genes[0], attr),
+ getattr(model2.genes[0], attr))
+ self.assertEqual(getattr(model1.genes[10], attr),
+ getattr(model2.genes[10], attr))
+ self.assertEqual(getattr(model1.genes[-1], attr),
+ getattr(model2.genes[-1], attr))
+ return
def test_read(self):
read_model = self.read_function(self.test_file)
@@ -65,13 +86,18 @@ class TestCobraIO(object):
# make sure that an error is raised when given a nonexistent file
self.assertRaises(IOError, self.read_function, "fake_file")
- def test_write_and_reread(self):
+ def test_write(self):
test_output_filename = join(gettempdir(), split(self.test_file)[-1])
self.write_function(self.test_model, test_output_filename)
reread_model = self.read_function(test_output_filename)
self.compare_models(self.test_model, reread_model)
+ self.validate(test_output_filename)
unlink(test_output_filename)
+ def validate(self, filename):
+ # overload if a validator exists
+ None
+
class TestCobraIOSBMLfbc2(TestCase, TestCobraIO):
def setUp(self):
@@ -80,6 +106,25 @@ class TestCobraIOSBMLfbc2(TestCase, TestCobraIO):
self.read_function = io.read_sbml_model
self.write_function = io.write_sbml_model
+ def validate(self, filename):
+ io.sbml3.validate_sbml_model(filename)
+
+
+class TestCobraIOSBMLfbc2Gz(TestCobraIOSBMLfbc2):
+ def setUp(self):
+ self.test_model = mini_model
+ self.test_file = join(data_directory, "mini_fbc2.xml.gz")
+ self.read_function = io.read_sbml_model
+ self.write_function = io.write_sbml_model
+
+
+class TestCobraIOSBMLfbc2Bz2(TestCobraIOSBMLfbc2):
+ def setUp(self):
+ self.test_model = mini_model
+ self.test_file = join(data_directory, "mini_fbc2.xml.bz2")
+ self.read_function = io.read_sbml_model
+ self.write_function = io.write_sbml_model
+
@skipIf(not libsbml, "libsbml required")
class TestCobraIOSBMLfbc1(TestCase, TestCobraIO):
@@ -90,6 +135,9 @@ class TestCobraIOSBMLfbc1(TestCase, TestCobraIO):
self.write_function = partial(io.write_legacy_sbml,
use_fbc_package=True)
+ def extra_comparisons(self, model1, model2):
+ None
+
@skipIf(not libsbml, "libsbml required")
class TestCobraIOSBMLcobra(TestCase, TestCobraIO):
@@ -100,6 +148,9 @@ class TestCobraIOSBMLcobra(TestCase, TestCobraIO):
self.write_function = partial(io.write_sbml_model,
use_fbc_package=False)
+ def extra_comparisons(self, model1, model2):
+ None
+
@skipIf(not scipy, "scipy required")
class TestCobraIOmat(TestCase, TestCobraIO):
@@ -109,6 +160,10 @@ class TestCobraIOmat(TestCase, TestCobraIO):
self.read_function = io.load_matlab_model
self.write_function = io.save_matlab_model
+ def extra_comparisons(self, model1, model2):
+ # MAT does not store gene names
+ None
+
class TestCobraIOjson(TestCase, TestCobraIO):
def setUp(self):
@@ -117,18 +172,13 @@ class TestCobraIOjson(TestCase, TestCobraIO):
self.read_function = io.load_json_model
self.write_function = io.save_json_model
- def test_gene_names(self):
- # write and reread
- test_output_filename = join(gettempdir(), split(self.test_file)[-1])
- gene_ids = [self.test_model.genes[n].id for n in (0, -1)]
- self.test_model.genes.get_by_id(gene_ids[0]).name = 'new_name'
- self.write_function(self.test_model, test_output_filename)
- reread_model = self.read_function(test_output_filename)
- # check gene names, ignoring order
- for gene_id in gene_ids:
- self.assertEqual(self.test_model.genes.get_by_id(gene_id).name,
- reread_model.genes.get_by_id(gene_id).name)
- unlink(test_output_filename)
+ def validate(self, filename):
+ with open(filename, "r") as infile:
+ loaded = io.json.json.load(infile)
+ if jsonschema is None:
+ warn("jsonschema not installed")
+ return
+ jsonschema.validate(loaded, io.json.json_schema)
class TestCobraIOPickle(TestCase, TestCobraIO):
diff --git a/cobra/test/unit_tests.py b/cobra/test/unit_tests.py
index 0b51faf..61cdc0a 100644
--- a/cobra/test/unit_tests.py
+++ b/cobra/test/unit_tests.py
@@ -253,6 +253,8 @@ class TestReactions(CobraTestCase):
fake_gene = model.genes.get_by_id("fake_gene")
self.assertIn(fake_gene, reaction.genes)
self.assertIn(reaction, fake_gene.reactions)
+ fake_gene.name = "foo_gene"
+ self.assertEqual(reaction.gene_name_reaction_rule, fake_gene.name)
def test_add_metabolite(self):
"""adding a metabolite to a reaction in a model"""
@@ -291,6 +293,7 @@ class TestReactions(CobraTestCase):
self.assertEqual(pgi.lower_bound, 0)
pgi.reaction = "g6p_c <== f6p_c"
self.assertEqual(pgi.upper_bound, 0)
+ self.assertEqual(pgi.reaction.strip(), "g6p_c <-- f6p_c")
pgi.reaction = "g6p_c --> f6p_c + h2o_c"
self.assertIn(model.metabolites.h2o_c, pgi._metabolites)
pgi.build_reaction_from_string("g6p_c --> f6p_c + foo", verbose=False)
diff --git a/documentation_builder/io.ipynb b/documentation_builder/io.ipynb
index 7e9508f..e305b68 100644
--- a/documentation_builder/io.ipynb
+++ b/documentation_builder/io.ipynb
@@ -6,7 +6,7 @@
"source": [
"# Reading and Writing Models\n",
"\n",
- "Cobrapy supports reading and writing models in SBML (with and without FBC), JSON, MAT, and pickle formats. Generally, SBML with FBC is the preferred format for general use.\n",
+ "Cobrapy supports reading and writing models in SBML (with and without FBC), JSON, MAT, and pickle formats. Generally, SBML with FBC version 2 is the preferred format for general use. The JSON format may be more useful for cobrapy-specific functionality.\n",
"\n",
"The package also ships with test models in various formats for testing purposes."
]
@@ -23,7 +23,7 @@
"output_type": "stream",
"text": [
"mini test files: \n",
- "mini.mat, mini_cobra.xml, mini.json, mini_fbc2.xml, mini_fbc1.xml, mini.pickle\n"
+ "mini.mat, mini_cobra.xml, mini.json, mini_fbc2.xml.gz, mini_fbc2.xml.bz2, mini_fbc2.xml, mini_fbc1.xml, mini.pickle\n"
]
}
],
@@ -65,7 +65,7 @@
{
"data": {
"text/plain": [
- "<Model mini_textbook at 0x7f82fc4aec90>"
+ "<Model mini_textbook at 0x7f35fc0de3d0>"
]
},
"execution_count": 2,
@@ -107,7 +107,7 @@
{
"data": {
"text/plain": [
- "<Model mini_textbook at 0x7f82cc744c10>"
+ "<Model mini_textbook at 0x7f35c46c7990>"
]
},
"execution_count": 4,
@@ -136,7 +136,7 @@
"source": [
"## JSON\n",
"\n",
- "cobrapy models have a [JSON](https://en.wikipedia.org/wiki/JSON) (JavaScript Object Notation) representation. This format was crated for interoperability with [escher](https://escher.github.io). Additional fields, however, will not be saved."
+ "cobrapy models have a [JSON](https://en.wikipedia.org/wiki/JSON) (JavaScript Object Notation) representation. This format was crated for interoperability with [escher](https://escher.github.io)."
]
},
{
@@ -149,7 +149,7 @@
{
"data": {
"text/plain": [
- "<Model mini_textbook at 0x7f82fc4d4f50>"
+ "<Model mini_textbook at 0x7f35c46dcd50>"
]
},
"execution_count": 6,
@@ -198,7 +198,7 @@
{
"data": {
"text/plain": [
- "<Model mini_textbook at 0x7f82cc97b110>"
+ "<Model mini_textbook at 0x7f35c46dcc90>"
]
},
"execution_count": 8,
@@ -228,7 +228,7 @@
{
"data": {
"text/plain": [
- "<Model mini_textbook at 0x7f82fc4d4450>"
+ "<Model mini_textbook at 0x7f35c46dcb90>"
]
},
"execution_count": 9,
@@ -269,26 +269,9 @@
"cell_type": "markdown",
"metadata": {},
"source": [
- "Cobra models can be serialized using the python serialization format, [pickle](https://docs.python.org/2/library/pickle.html). While this will save any extra fields which may have been created, it does not work with any other tools and can break between cobrapy major versions. JSON, SBML, and MAT are generally the preferred format."
- ]
- },
- {
- "cell_type": "code",
- "execution_count": 11,
- "metadata": {
- "collapsed": false
- },
- "outputs": [],
- "source": [
- "from pickle import load, dump\n",
- "\n",
- "# read in the test models\n",
- "with open(os.path.join(cobra.test.data_directory, \"mini.pickle\"), \"rb\") as infile:\n",
- " mini_model = load(infile)\n",
+ "Cobra models can be serialized using the python serialization format, [pickle](https://docs.python.org/2/library/pickle.html).\n",
"\n",
- "# output to a file\n",
- "with open(\"test.pickle\", \"wb\") as outfile:\n",
- " dump(textbook_model, outfile)"
+ "Please note that use of the pickle format is generally not recommended for most use cases. JSON, SBML, and MAT are generally the preferred formats."
]
}
],
diff --git a/setup.py b/setup.py
index d5327b9..8a9ab80 100644
--- a/setup.py
+++ b/setup.py
@@ -129,7 +129,7 @@ except:
extras = {
'matlab': ["pymatbridge"],
- 'sbml': ["python-libsbml-experimental"],
+ 'sbml': ["python-libsbml-experimental", "lxml"],
'array': ["numpy>=1.6", "scipy>=11.0"],
'display': ["matplotlib", "brewer2mpl", "pandas"]
}
@@ -158,6 +158,7 @@ setup(
packages=find_packages(exclude=['cobra.oven', 'cobra.oven*']),
setup_requires=[],
install_requires=["six"],
+ tests_require=["jsonschema > 2.5"],
extras_require=extras,
ext_modules=ext_modules,
--
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/python-cobra.git
More information about the debian-med-commit
mailing list