[med-svn] [python-cobra] branch upstream updated (515cf06 -> eb3fb84)
Afif Elghraoui
afif-guest at moszumanska.debian.org
Wed Aug 5 03:31:56 UTC 2015
This is an automated email from the git hooks/post-receive script.
afif-guest pushed a change to branch upstream
in repository python-cobra.
from 515cf06 Imported Upstream version 0.4.0b1
new eb3fb84 Imported Upstream version 0.4.0b2
The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
.travis.yml | 15 +-
INSTALL.md | 10 +-
appveyor.yml | 14 +-
cobra/VERSION | 2 +-
cobra/core/Gene.py | 39 +-
cobra/core/Metabolite.py | 2 +-
cobra/core/Model.py | 26 +-
cobra/core/Object.py | 41 +-
cobra/core/Reaction.py | 32 +-
cobra/core/Species.py | 15 +-
cobra/io/json.py | 203 +-
cobra/io/mat.py | 25 +-
cobra/io/sbml.py | 4 +-
cobra/io/sbml3.py | 390 +-
cobra/manipulation/modify.py | 75 +-
cobra/test/__init__.py | 2 +-
cobra/test/data/mini.json | 1345 +-
cobra/test/data/mini.mat | Bin 14752 -> 14352 bytes
cobra/test/data/mini.pickle | Bin 10952 -> 25348 bytes
cobra/test/data/mini_cobra.xml | 342 +-
cobra/test/data/mini_fbc1.xml | 387 +-
cobra/test/data/mini_fbc2.xml | 1416 +-
cobra/test/data/mini_fbc2.xml.bz2 | Bin 0 -> 4939 bytes
cobra/test/data/mini_fbc2.xml.gz | Bin 0 -> 5637 bytes
cobra/test/data/salmonella_fbc.xml | 77257 -----------------------------------
cobra/test/data/textbook.xml | 1562 -
cobra/test/data/textbook.xml.gz | Bin 0 -> 16329 bytes
cobra/test/data/textbook_fva.json | 1 +
cobra/test/data/update_pickles.py | 115 +-
cobra/test/flux_analysis.py | 52 +-
cobra/test/io_tests.py | 80 +-
cobra/test/unit_tests.py | 3 +
documentation_builder/io.ipynb | 37 +-
setup.py | 3 +-
34 files changed, 3767 insertions(+), 79728 deletions(-)
create mode 100644 cobra/test/data/mini_fbc2.xml.bz2
create mode 100644 cobra/test/data/mini_fbc2.xml.gz
delete mode 100644 cobra/test/data/salmonella_fbc.xml
delete mode 100644 cobra/test/data/textbook.xml
create mode 100644 cobra/test/data/textbook.xml.gz
create mode 100644 cobra/test/data/textbook_fva.json
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