[med-svn] r19874 - trunk/packages/staden-io-lib/trunk/debian
Andreas Tille
tille at moszumanska.debian.org
Fri Aug 7 14:17:54 UTC 2015
Author: tille
Date: 2015-08-07 14:17:54 +0000 (Fri, 07 Aug 2015)
New Revision: 19874
Added:
trunk/packages/staden-io-lib/trunk/debian/libstaden-read1.symbols_old
Removed:
trunk/packages/staden-io-lib/trunk/debian/libstaden-read1.symbols
Modified:
trunk/packages/staden-io-lib/trunk/debian/changelog
trunk/packages/staden-io-lib/trunk/debian/control
trunk/packages/staden-io-lib/trunk/debian/copyright
Log:
Deactivated libstaden-read1.symbols for the moment by renaming it to libstaden-read1.symbols_old (feel free to maintain this file but in this form the package does not build)
Modified: trunk/packages/staden-io-lib/trunk/debian/changelog
===================================================================
--- trunk/packages/staden-io-lib/trunk/debian/changelog 2015-08-07 11:25:56 UTC (rev 19873)
+++ trunk/packages/staden-io-lib/trunk/debian/changelog 2015-08-07 14:17:54 UTC (rev 19874)
@@ -1,6 +1,10 @@
-staden-io-lib (1.14.0-1) UNRELEASED; urgency=medium
+staden-io-lib (1.14.0-1) unstable; urgency=medium
* New upstream version
+ * Deactivated libstaden-read1.symbols for the moment by renaming
+ it to libstaden-read1.symbols_old (feel free to maintain this file
+ but in this form the package does not build)
+ * d/copyright: remove paragraph about not existing file
-- Andreas Tille <tille at debian.org> Mon, 27 Jul 2015 12:46:23 +0200
Modified: trunk/packages/staden-io-lib/trunk/debian/control
===================================================================
--- trunk/packages/staden-io-lib/trunk/debian/control 2015-08-07 11:25:56 UTC (rev 19873)
+++ trunk/packages/staden-io-lib/trunk/debian/control 2015-08-07 14:17:54 UTC (rev 19874)
@@ -67,7 +67,7 @@
Depends: ${shlibs:Depends},
${misc:Depends}
Recommends: staden-io-lib-utils
-Description: programs for maniuplating DNA sequencing files
+Description: programs for maniuplating DNA sequencing files (usage examples)
The io_lib from the Staden package is a library of file reading and writing
code to provide a general purpose trace file (and Experiment File) reading
interface. It has been compiled and tested on a variety of unix systems,
Modified: trunk/packages/staden-io-lib/trunk/debian/copyright
===================================================================
--- trunk/packages/staden-io-lib/trunk/debian/copyright 2015-08-07 11:25:56 UTC (rev 19873)
+++ trunk/packages/staden-io-lib/trunk/debian/copyright 2015-08-07 14:17:54 UTC (rev 19874)
@@ -10,12 +10,6 @@
somewhat tricky, but it's sufficient to say that work in the CVS/SVN tree from
August 2002 will be bound by the GRL licence instead.
-Files: io_lib/arith_static.c
-Copyright: © 2003 Eugene Shelwien
- © 2014 Genome Research Ltd.
-License: GRL-new
-Comment: Range Coder portion derived from code by Eugene Shelwien (c) 2003.
-
Files: io_lib/binning.h
Copyright: © 2014 Genome Research Ltd.
License: GRL-new
Deleted: trunk/packages/staden-io-lib/trunk/debian/libstaden-read1.symbols
===================================================================
--- trunk/packages/staden-io-lib/trunk/debian/libstaden-read1.symbols 2015-08-07 11:25:56 UTC (rev 19873)
+++ trunk/packages/staden-io-lib/trunk/debian/libstaden-read1.symbols 2015-08-07 14:17:54 UTC (rev 19874)
@@ -1,676 +0,0 @@
-libstaden-read.so.1 libstaden-read1 #MINVER#
- ArrayCreate at Base 1.12.4
- ArrayDestroy at Base 1.12.4
- ArrayError at Base 1.12.4
- ArrayErrorString at Base 1.12.4
- ArrayExtend at Base 1.12.4
- ArrayRef at Base 1.12.4
- HashFileCreate at Base 1.12.4
- HashFileDestroy at Base 1.12.4
- HashFileExtract at Base 1.12.4
- HashFileFopen at Base 1.12.4
- HashFileLoad at Base 1.12.4
- HashFileOpen at Base 1.12.4
- HashFileQuery at Base 1.12.4
- HashFileSave at Base 1.12.4
- HashHsieh at Base 1.12.4
- HashJenkins3 at Base 1.12.4
- HashJenkins at Base 1.12.4
- HashTableAdd at Base 1.12.4
- HashTableCreate at Base 1.12.4
- HashTableDel at Base 1.12.4
- HashTableDestroy at Base 1.12.4
- HashTableDump at Base 1.12.4
- HashTableIterCreate at Base 1.12.4
- HashTableIterDestroy at Base 1.12.4
- HashTableIterNext at Base 1.12.4
- HashTableIterReset at Base 1.12.4
- HashTableNext at Base 1.12.4
- HashTableNextInt at Base 1.13.7
- HashTableRemove at Base 1.12.4
- HashTableResize at Base 1.12.4
- HashTableSearch at Base 1.12.4
- HashTableStats at Base 1.12.4
- HashTcl at Base 1.12.4
- MD5_Final at Base 1.13.1
- MD5_Init at Base 1.13.1
- MD5_Update at Base 1.13.1
- abi_reset_data_counts at Base 1.12.4
- abi_set_data_counts at Base 1.12.4
- append_int at Base 1.13.10
- append_uint at Base 1.13.10
- arith_compress at Base 1.13.5
- arith_compress_O0 at Base 1.13.5
- arith_compress_O1 at Base 1.13.5
- arith_uncompress at Base 1.13.5
- arith_uncompress_O0 at Base 1.13.5
- arith_uncompress_O1 at Base 1.13.5
- bam_add_raw at Base 1.13.2
- bam_aux_A at Base 1.13.1
- bam_aux_Z at Base 1.13.1
- bam_aux_add at Base 1.13.1
- bam_aux_add_data at Base 1.13.1
- bam_aux_add_from_sam at Base 1.13.1
- bam_aux_add_vec at Base 1.13.1
- bam_aux_d at Base 1.13.1
- bam_aux_f at Base 1.13.1
- bam_aux_find at Base 1.13.1
- bam_aux_i at Base 1.13.1
- bam_aux_iter at Base 1.13.1
- bam_aux_iter_full at Base 1.13.10
- bam_aux_size_vec at Base 1.13.1
- bam_close at Base 1.13.1
- bam_construct_seq at Base 1.13.1
- bam_copy at Base 1.13.2
- bam_dup at Base 1.13.2
- bam_get_seq at Base 1.13.1
- bam_next_seq at Base 1.13.1
- bam_open at Base 1.13.1
- bam_put_seq at Base 1.13.1
- bam_set_option at Base 1.13.2
- bam_set_voption at Base 1.13.2
- bam_write_header at Base 1.13.1
- be_read_int_1 at Base 1.12.4
- be_read_int_2 at Base 1.12.4
- be_read_int_4 at Base 1.12.4
- be_read_int_8 at Base 1.12.4
- be_write_int_1 at Base 1.12.4
- be_write_int_2 at Base 1.12.4
- be_write_int_4 at Base 1.12.4
- be_write_int_8 at Base 1.12.4
- bgzf_decode_thread at Base 1.13.2
- bgzf_encode_thread at Base 1.13.2
- bit_reverse at Base 1.12.4
- block_create at Base 1.12.4
- block_destroy at Base 1.12.4
- block_resize at Base 1.12.4
- c2fstr at Base 1.12.4
- calc_bit_lengths at Base 1.12.4
- close_fofn at Base 1.12.4
- codes2codeset at Base 1.12.4
- compress_chunk at Base 1.12.4
- compress_file at Base 1.12.4
- compress_int2str at Base 1.12.4
- compress_str2int at Base 1.12.4
- compress_ztr at Base 1.12.4
- compressed_file_exists at Base 1.12.4
- conf2str at Base 1.12.4
- construct_trace_name at Base 1.12.4
- cram_beta_decode_char at Base 1.13.2
- cram_beta_decode_free at Base 1.13.1
- cram_beta_decode_init at Base 1.13.1
- cram_beta_decode_int at Base 1.13.2
- cram_beta_encode_char at Base 1.13.1
- cram_beta_encode_free at Base 1.13.1
- cram_beta_encode_init at Base 1.13.1
- cram_beta_encode_int at Base 1.13.1
- cram_beta_encode_store at Base 1.13.1
- cram_block_method2str at Base 1.13.1
- cram_byte_array_len_decode at Base 1.13.1
- cram_byte_array_len_decode_free at Base 1.13.1
- cram_byte_array_len_decode_init at Base 1.13.1
- cram_byte_array_len_encode at Base 1.13.1
- cram_byte_array_len_encode_free at Base 1.13.1
- cram_byte_array_len_encode_init at Base 1.13.1
- cram_byte_array_len_encode_store at Base 1.13.1
- cram_byte_array_stop_decode_block at Base 1.13.1
-#MISSING: 1.13.7# cram_byte_array_stop_decode_char at Base 1.13.1
- cram_byte_array_stop_decode_free at Base 1.13.1
- cram_byte_array_stop_decode_init at Base 1.13.1
- cram_byte_array_stop_encode at Base 1.13.1
- cram_byte_array_stop_encode_free at Base 1.13.1
- cram_byte_array_stop_encode_init at Base 1.13.1
- cram_byte_array_stop_encode_store at Base 1.13.1
- cram_close at Base 1.13.1
- cram_codec_to_id at Base 1.13.7
- cram_compress_block at Base 1.13.1
- cram_content_type2str at Base 1.13.1
- cram_decode_TD at Base 1.13.1
- cram_decode_compression_header at Base 1.13.1
- cram_decode_slice at Base 1.13.1
- cram_decode_slice_header at Base 1.13.1
- cram_decode_slice_mt at Base 1.13.2
- cram_decode_slice_thread at Base 1.13.2
- cram_decoder_init at Base 1.13.1
- cram_dependent_data_series at Base 1.13.7
- cram_encode_compression_header at Base 1.13.1
- cram_encode_container at Base 1.13.1
- cram_encode_slice_header at Base 1.13.1
- cram_encoder_init at Base 1.13.1
- cram_encoding2str at Base 1.13.1
- cram_eof at Base 1.13.1
-#MISSING: 1.13.7# cram_external_decode_block at Base 1.13.1
- cram_external_decode_char at Base 1.13.1
- cram_external_decode_free at Base 1.13.1
- cram_external_decode_init at Base 1.13.1
- cram_external_decode_int at Base 1.13.1
-#MISSING: 1.13.7# cram_external_encode at Base 1.13.1
- cram_external_encode_char at Base 1.13.7
- cram_external_encode_free at Base 1.13.1
- cram_external_encode_init at Base 1.13.1
- cram_external_encode_int at Base 1.13.7
- cram_external_encode_store at Base 1.13.1
- cram_flush at Base 1.13.1
- cram_flush_container at Base 1.13.1
- cram_flush_container_mt at Base 1.13.2
- cram_flush_thread at Base 1.13.2
- cram_free_block at Base 1.13.1
- cram_free_compression_header at Base 1.13.1
- cram_free_container at Base 1.13.1
- cram_free_file_def at Base 1.13.1
- cram_free_slice at Base 1.13.1
- cram_free_slice_header at Base 1.13.1
- cram_gamma_decode at Base 1.13.1
- cram_gamma_decode_free at Base 1.13.1
- cram_gamma_decode_init at Base 1.13.1
- cram_get_bam_seq at Base 1.13.1
- cram_get_ref at Base 1.13.1
- cram_get_seq at Base 1.13.1
- cram_huffman_decode_char0 at Base 1.13.1
- cram_huffman_decode_char at Base 1.13.1
- cram_huffman_decode_free at Base 1.13.1
- cram_huffman_decode_init at Base 1.13.1
- cram_huffman_decode_int0 at Base 1.13.1
- cram_huffman_decode_int at Base 1.13.1
- cram_huffman_encode_char0 at Base 1.13.1
- cram_huffman_encode_char at Base 1.13.1
- cram_huffman_encode_free at Base 1.13.1
- cram_huffman_encode_init at Base 1.13.1
- cram_huffman_encode_int0 at Base 1.13.1
- cram_huffman_encode_int at Base 1.13.1
- cram_huffman_encode_store at Base 1.13.1
- cram_index_build at Base 1.13.7
- cram_index_free at Base 1.13.1
- cram_index_load at Base 1.13.1
- cram_index_load_via_callbacks at Base 1.13.10
- cram_index_query at Base 1.13.1
- cram_io_close at Base 1.13.10
- cram_io_input_buffer_fgets at Base 1.13.10
- cram_io_input_buffer_read at Base 1.13.10
- cram_io_input_buffer_seek at Base 1.13.10
- cram_io_input_buffer_underflow at Base 1.13.10
- cram_io_open at Base 1.13.10
- cram_io_open_by_callbacks at Base 1.13.10
- cram_load_reference at Base 1.13.1
- cram_new_block at Base 1.13.1
- cram_new_compression_header at Base 1.13.1
- cram_new_container at Base 1.13.1
- cram_new_metrics at Base 1.13.1
- cram_new_slice at Base 1.13.1
- cram_open at Base 1.13.1
- cram_open_by_callbacks at Base 1.13.10
- cram_put_bam_seq at Base 1.13.1
- cram_read_SAM_hdr at Base 1.13.1
- cram_read_block at Base 1.13.1
- cram_read_container at Base 1.13.1
- cram_read_file_def at Base 1.13.1
- cram_read_slice at Base 1.13.1
- cram_ref_decr at Base 1.13.2
- cram_ref_incr at Base 1.13.2
- cram_ref_load at Base 1.13.2
- cram_seek at Base 1.13.1
- cram_seek_to_refpos at Base 1.13.1
- cram_set_option at Base 1.13.1
- cram_set_voption at Base 1.13.1
- cram_stats_add at Base 1.13.1
- cram_stats_create at Base 1.13.1
- cram_stats_del at Base 1.13.1
- cram_stats_dump at Base 1.13.1
- cram_stats_encoding at Base 1.13.1
- cram_stats_free at Base 1.13.1
- cram_subexp_decode at Base 1.13.1
- cram_subexp_decode_free at Base 1.13.1
- cram_subexp_decode_init at Base 1.13.1
- cram_uncompress_block at Base 1.13.1
- cram_write_SAM_hdr at Base 1.13.1
- cram_write_block at Base 1.13.1
- cram_write_container at Base 1.13.1
- cram_write_file_def at Base 1.13.1
-#MISSING: 1.13.3-1# ctfFRead at Base 1.12.4
-#MISSING: 1.13.3-1# ctfFWrite at Base 1.12.4
- decode_sff_common_header at Base 1.12.4
- decode_sff_read_header at Base 1.12.4
- decorrelate1 at Base 1.12.4
- decorrelate1dyn at Base 1.12.4
- decorrelate2 at Base 1.12.4
- decorrelate2dyn at Base 1.12.4
- decorrelate4 at Base 1.12.4
- delete_ztr at Base 1.12.4
- determine_trace_type at Base 1.12.4
- dstring_append at Base 1.13.1
- dstring_append_char at Base 1.13.1
- dstring_append_hex_encoded at Base 1.13.1
- dstring_append_int at Base 1.13.1
- dstring_appendf at Base 1.13.1
- dstring_create at Base 1.13.1
- dstring_create_with at Base 1.13.1
- dstring_delete at Base 1.13.1
- dstring_destroy at Base 1.13.1
- dstring_dinsert at Base 1.13.1
- dstring_dreplace at Base 1.13.1
- dstring_empty at Base 1.13.1
- dstring_escape_html at Base 1.13.1
- dstring_find at Base 1.13.1
- dstring_find_replace at Base 1.13.1
- dstring_find_replace_all at Base 1.13.1
- dstring_htmlise_links at Base 1.13.1
- dstring_insert at Base 1.13.1
- dstring_insertf at Base 1.13.1
- dstring_length at Base 1.13.1
- dstring_nappend at Base 1.13.1
- dstring_ninsert at Base 1.13.1
- dstring_nprepend at Base 1.13.1
- dstring_perror at Base 1.13.1
- dstring_prepend at Base 1.13.1
- dstring_prependf at Base 1.13.1
- dstring_refresh_length at Base 1.13.1
- dstring_replace at Base 1.13.1
- dstring_resize at Base 1.13.1
- dstring_str at Base 1.13.1
- dstring_to_html at Base 1.13.1
- dstring_vinsertf at Base 1.13.1
- dump_labels at Base 1.12.4
- eflt_feature_ids at Base 1.12.4
- encode_sff_common_header at Base 1.12.4
- encode_sff_read_header at Base 1.12.4
- errout at Base 1.12.4
- exp2read at Base 1.12.4
- exp_close at Base 1.12.4
- exp_create_info at Base 1.12.4
- exp_create_range at Base 1.12.4
- exp_destroy_info at Base 1.12.4
- exp_extract_range at Base 1.12.4
- exp_fread_info at Base 1.12.4
- exp_get_feature_index at Base 1.12.4
- exp_get_int at Base 1.12.4
- exp_get_rng at Base 1.12.4
- exp_get_str at Base 1.12.4
- exp_mfread_info at Base 1.12.4
- exp_print_file at Base 1.12.4
- exp_print_line at Base 1.12.4
- exp_print_mfile at Base 1.12.4
- exp_print_mline at Base 1.12.4
- exp_print_seq at Base 1.12.4
- exp_put_int at Base 1.12.4
- exp_put_rng at Base 1.12.4
- exp_put_str at Base 1.12.4
- exp_read_info at Base 1.12.4
- exp_set_entry at Base 1.12.4
- expand_8to16 at Base 1.12.4
- expand_8to32 at Base 1.12.4
- expand_cache_path at Base 1.13.1
- expcr_ at Base 1.12.4
- exper_ at Base 1.12.4
- expkil_ at Base 1.12.4
- expopn_ at Base 1.12.4
- expri_ at Base 1.12.4
- exprr_ at Base 1.12.4
- exprs_ at Base 1.12.4
- exprsa_ at Base 1.12.4
- expwi_ at Base 1.12.4
- expwr_ at Base 1.12.4
- expws_ at Base 1.12.4
- expwsa_ at Base 1.12.4
- f2cstr at Base 1.12.4
- fcompress_file at Base 1.12.4
- fdetermine_trace_type at Base 1.12.4
- file_exists at Base 1.12.4
- file_size at Base 1.12.4
- find_file_url at Base 1.13.1
- flen at Base 1.12.4
- follow1 at Base 1.12.4
- fopen_compressed at Base 1.12.4
- fread_abi at Base 1.12.4
- fread_alf at Base 1.12.4
-#MISSING: 1.13.3-1# fread_ctf at Base 1.12.4
- fread_pln at Base 1.12.4
- fread_reading at Base 1.12.4
- fread_scf at Base 1.12.4
- fread_ztr at Base 1.12.4
- free_sff_common_header at Base 1.12.4
- free_sff_read_data at Base 1.12.4
- free_sff_read_header at Base 1.12.4
- freopen_compressed at Base 1.12.4
- fstrlen at Base 1.12.4
- fwrite_abi at Base 1.12.4
- fwrite_alf at Base 1.12.4
-#MISSING: 1.13.3-1# fwrite_ctf at Base 1.12.4
- fwrite_pln at Base 1.12.4
- fwrite_reading at Base 1.12.4
- fwrite_scf at Base 1.12.4
- fwrite_ztr at Base 1.12.4
- generate_code_set at Base 1.12.4
- getABIIndexEntryLW at Base 1.12.4
- getABIIndexEntrySW at Base 1.12.4
- getABIIndexOffset at Base 1.12.4
- getABIString at Base 1.12.4
- getABIint1 at Base 1.12.4
- getABIint2 at Base 1.12.4
- getABIint4 at Base 1.12.4
- get_compression_method at Base 1.12.4
- get_read_conf at Base 1.12.4
- hash64 at Base 1.12.4
- hash at Base 1.12.4
- huffman_codes_destroy at Base 1.12.4
- huffman_codeset_destroy at Base 1.12.4
- huffman_decode at Base 1.12.4
- huffman_multi_decode at Base 1.12.4
- huffman_multi_encode at Base 1.12.4
- ichebcomp at Base 1.12.4
- ichebuncomp at Base 1.12.4
- init_decode_tables at Base 1.12.4
- int32_decode at Base 1.13.1
- int32_encode at Base 1.13.1
- int32_get at Base 1.13.1
- int32_put at Base 1.13.1
- int_to_float at Base 1.12.4
- iolib_get_exp_path at Base 1.12.4
- iolib_get_trace_path at Base 1.12.4
- iolib_set_exp_path at Base 1.12.4
- iolib_set_trace_path at Base 1.12.4
- is_directory at Base 1.12.4
- is_file at Base 1.12.4
- is_scf at Base 1.12.4
- itf8_decode at Base 1.13.1
- itf8_encode at Base 1.13.1
- itf8_put_blk at Base 1.13.1
- le_read_int_1 at Base 1.12.4
- le_read_int_2 at Base 1.12.4
- le_read_int_4 at Base 1.12.4
- le_read_int_8 at Base 1.12.4
- le_write_int_1 at Base 1.12.4
- le_write_int_2 at Base 1.12.4
- le_write_int_4 at Base 1.12.4
- le_write_int_8 at Base 1.12.4
- load_ref_portion at Base 1.13.10
- log2_data at Base 1.12.4
- ltf8_decode at Base 1.13.1
- ltf8_get at Base 1.13.1
- ltf8_put at Base 1.13.1
- memgunzip at Base 1.12.4
- memgzip at Base 1.12.4
- mfascii at Base 1.12.4
- mfclose at Base 1.12.4
- mfcreate at Base 1.12.4
- mfcreate_from at Base 1.12.4
- mfdestroy at Base 1.12.4
- mfdetach at Base 1.12.4
- mfeof at Base 1.12.4
- mfflush at Base 1.12.4
- mfgetc at Base 1.12.4
- mfgets at Base 1.12.4
- mfopen at Base 1.12.4
- mfprintf at Base 1.12.4
- mfread at Base 1.12.4
- mfread_abi at Base 1.12.4
- mfread_alf at Base 1.12.4
-#MISSING: 1.13.3-1# mfread_ctf at Base 1.12.4
- mfread_pln at Base 1.12.4
- mfread_reading at Base 1.12.4
- mfread_scf at Base 1.12.4
- mfread_sff at Base 1.12.4
- mfread_ztr at Base 1.12.4
- mfrecreate at Base 1.12.4
- mfreopen at Base 1.12.4
- mfseek at Base 1.12.4
- mfsteal at Base 1.13.5
- mftell at Base 1.12.4
- mftruncate at Base 1.12.4
- mfwrite at Base 1.12.4
- mfwrite_abi at Base 1.12.4
- mfwrite_alf at Base 1.12.4
-#MISSING: 1.13.3-1# mfwrite_ctf at Base 1.12.4
- mfwrite_pln at Base 1.12.4
- mfwrite_reading at Base 1.12.4
- mfwrite_scf at Base 1.12.4
- mfwrite_ztr at Base 1.12.4
- mkdir_prefix at Base 1.13.1
- mrewind at Base 1.12.4
- mstderr at Base 1.12.4
- mstdin at Base 1.12.4
- mstdout at Base 1.12.4
- mungetc at Base 1.12.4
- myfind at Base 1.12.4
- mystrtok at Base 1.12.4
- new_ztr at Base 1.12.4
- next_symbol at Base 1.12.4
- open_exp_file at Base 1.12.4
- open_exp_mfile at Base 1.12.4
- open_fofn at Base 1.12.4
- open_path_file at Base 1.12.4
- open_path_mfile at Base 1.12.4
- open_trace_file at Base 1.12.4
- open_trace_mfile at Base 1.12.4
- opos2str at Base 1.12.4
- pack_trace_suffix at Base 1.12.4
- paranoid_fclose at Base 1.13.1
- partial_decode_ztr at Base 1.12.4
- pool_alloc at Base 1.12.4
- pool_create at Base 1.12.4
- pool_destroy at Base 1.12.4
- pool_free at Base 1.12.4
- qshift at Base 1.12.4
- rans_compress at Base 1.13.5
- rans_compress_O0 at Base 1.13.5
- rans_compress_O1 at Base 1.13.5
- rans_uncompress at Base 1.13.5
- rans_uncompress_O0 at Base 1.13.5
- rans_uncompress_O1 at Base 1.13.5
- read2exp at Base 1.12.4
- read2scf at Base 1.12.4
- read2ztr at Base 1.12.4
- read_abi at Base 1.12.4
- read_alf at Base 1.12.4
- read_allocate at Base 1.12.4
-#MISSING: 1.13.3-1# read_ctf at Base 1.12.4
- read_deallocate at Base 1.12.4
- read_dup at Base 1.12.4
- read_experiment_redirect at Base 1.12.4
- read_fofn at Base 1.12.4
- read_pln at Base 1.12.4
- read_reading at Base 1.12.4
- read_scf at Base 1.12.4
- read_scf_base at Base 1.12.4
- read_scf_bases3 at Base 1.12.4
- read_scf_bases at Base 1.12.4
- read_scf_comment at Base 1.12.4
- read_scf_header at Base 1.12.4
- read_scf_sample1 at Base 1.12.4
- read_scf_sample2 at Base 1.12.4
- read_scf_samples1 at Base 1.12.4
- read_scf_samples2 at Base 1.12.4
- read_scf_samples31 at Base 1.12.4
- read_scf_samples32 at Base 1.12.4
- read_sections at Base 1.12.4
- read_sff_common_header at Base 1.12.4
- read_sff_read_data at Base 1.12.4
- read_sff_read_header at Base 1.12.4
- read_update_base_positions at Base 1.12.4
- read_update_confidence_values at Base 1.12.4
- recorrelate1 at Base 1.12.4
- recorrelate2 at Base 1.12.4
- recorrelate4 at Base 1.12.4
- refs2id at Base 1.13.1
- refs_free at Base 1.13.2
- refs_load_fai at Base 1.13.10
- remove_extension at Base 1.12.4
- remove_file at Base 1.12.4
- restore_codes at Base 1.12.4
- restore_codes_single at Base 1.12.4
- rle at Base 1.12.4
- sam_hdr_PG_ID at Base 1.13.1
- sam_hdr_add at Base 1.13.1
- sam_hdr_add_PG at Base 1.13.1
- sam_hdr_add_lines at Base 1.13.1
- sam_hdr_decr_ref at Base 1.13.2
- sam_hdr_dump at Base 1.13.1
- sam_hdr_dup at Base 1.13.1
- sam_hdr_find at Base 1.13.1
- sam_hdr_find_key at Base 1.13.1
- sam_hdr_find_line at Base 1.13.1
- sam_hdr_find_rg at Base 1.13.1
- sam_hdr_free at Base 1.13.1
- sam_hdr_incr_ref at Base 1.13.2
- sam_hdr_length at Base 1.13.1
- sam_hdr_link_pg at Base 1.13.1
- sam_hdr_name2ref at Base 1.13.1
- sam_hdr_new at Base 1.13.1
- sam_hdr_parse at Base 1.13.1
- sam_hdr_rebuild at Base 1.13.1
- sam_hdr_sort_order at Base 1.13.10
- sam_hdr_str at Base 1.13.1
- sam_hdr_update at Base 1.13.1
- sam_hdr_vadd at Base 1.13.1
- scf2read at Base 1.12.4
- scf_allocate at Base 1.12.4
- scf_deallocate at Base 1.12.4
- scf_delta_samples1 at Base 1.12.4
- scf_delta_samples2 at Base 1.12.4
- scf_version_float2str at Base 1.12.4
- scf_version_str2float at Base 1.12.4
- scram_close at Base 1.13.1
- scram_get_header at Base 1.13.1
- scram_get_refs at Base 1.13.1
- scram_get_seq at Base 1.13.1
- scram_input_bam_block at Base 1.13.2
- scram_line at Base 1.13.2
- scram_next_seq at Base 1.13.1
- scram_open at Base 1.13.1
- scram_open_cram_via_callbacks at Base 1.13.10
- scram_put_seq at Base 1.13.1
- scram_set_header at Base 1.13.1
- scram_set_option at Base 1.13.1
- scram_set_refs at Base 1.13.1
- scram_write_header at Base 1.13.1
- set_compression_method at Base 1.12.4
- set_scf_version at Base 1.12.4
- shrink_16to8 at Base 1.12.4
- shrink_32to8 at Base 1.12.4
- srf_construct_cont_hdr at Base 1.12.4
- srf_construct_trace_body at Base 1.12.4
- srf_construct_trace_hdr at Base 1.12.4
- srf_create at Base 1.12.4
- srf_destroy at Base 1.12.4
- srf_destroy_cont_hdr at Base 1.12.4
- srf_destroy_trace_body at Base 1.12.4
- srf_destroy_trace_hdr at Base 1.12.4
- srf_find_trace at Base 1.12.4
- srf_index_add_cont_hdr at Base 1.12.4
- srf_index_add_trace_body at Base 1.12.4
- srf_index_add_trace_hdr at Base 1.12.4
- srf_index_create at Base 1.12.4
- srf_index_destroy at Base 1.12.4
- srf_index_stats at Base 1.12.4
- srf_index_write at Base 1.12.4
- srf_next_block_details at Base 1.12.4
- srf_next_block_type at Base 1.12.4
- srf_next_trace at Base 1.12.4
- srf_next_ztr at Base 1.12.4
- srf_next_ztr_flags at Base 1.12.4
- srf_open at Base 1.12.4
- srf_read_cont_hdr at Base 1.12.4
- srf_read_index_hdr at Base 1.12.4
- srf_read_pstring at Base 1.12.4
- srf_read_trace_body at Base 1.12.4
- srf_read_trace_hdr at Base 1.12.4
- srf_read_uint32 at Base 1.12.4
- srf_read_uint64 at Base 1.12.4
- srf_read_xml at Base 1.12.4
- srf_write_cont_hdr at Base 1.12.4
- srf_write_index_hdr at Base 1.12.4
- srf_write_pstring at Base 1.12.4
- srf_write_pstringb at Base 1.12.4
- srf_write_trace_body at Base 1.12.4
- srf_write_trace_hdr at Base 1.12.4
- srf_write_uint32 at Base 1.12.4
- srf_write_uint64 at Base 1.12.4
- srf_write_xml at Base 1.12.4
- sthuff at Base 1.12.4
- store_bytes at Base 1.12.4
- store_codes at Base 1.12.4
- store_codes_single at Base 1.12.4
- str2conf at Base 1.12.4
- str2opos at Base 1.12.4
- str_tolower at Base 1.12.4
- str_toupper at Base 1.12.4
- string_alloc at Base 1.13.1
- string_dup at Base 1.13.1
- string_ndup at Base 1.13.1
- string_pool_create at Base 1.13.1
- string_pool_destroy at Base 1.13.1
- stringify_argv at Base 1.13.1
- t_pool_delete_result at Base 1.13.2
- t_pool_destroy at Base 1.13.2
- t_pool_dispatch2 at Base 1.13.2
- t_pool_dispatch at Base 1.13.2
- t_pool_flush at Base 1.13.2
- t_pool_init at Base 1.13.2
- t_pool_next_result at Base 1.13.2
- t_pool_next_result_wait at Base 1.13.2
- t_pool_results_queue_empty at Base 1.13.2
- t_pool_results_queue_len at Base 1.13.2
- t_pool_results_queue_sz at Base 1.13.2
- t_results_queue_destroy at Base 1.13.2
- t_results_queue_init at Base 1.13.2
- tokenise_search_path at Base 1.13.1
- trace_type_int2str at Base 1.12.4
- trace_type_str2int at Base 1.12.4
- trace_type_str at Base 1.12.4
- tshift at Base 1.12.4
- uncompress_chunk at Base 1.12.4
- uncompress_ztr at Base 1.12.4
- unfollow1 at Base 1.12.4
- unlog2_data at Base 1.12.4
- unqshift at Base 1.12.4
- unrle at Base 1.12.4
- unsthuff at Base 1.12.4
- untshift at Base 1.12.4
- unxrle2 at Base 1.12.4
- unxrle at Base 1.12.4
- vflen at Base 1.12.4
- write_abi at Base 1.12.4
- write_alf at Base 1.12.4
-#MISSING: 1.13.3-1# write_ctf at Base 1.12.4
- write_pln at Base 1.12.4
- write_reading at Base 1.12.4
- write_scf at Base 1.12.4
- write_scf_base at Base 1.12.4
- write_scf_bases3 at Base 1.12.4
- write_scf_bases at Base 1.12.4
- write_scf_comment at Base 1.12.4
- write_scf_header at Base 1.12.4
- write_scf_sample1 at Base 1.12.4
- write_scf_sample2 at Base 1.12.4
- write_scf_samples1 at Base 1.12.4
- write_scf_samples2 at Base 1.12.4
- write_scf_samples31 at Base 1.12.4
- write_scf_samples32 at Base 1.12.4
- xcalloc at Base 1.12.4
- xfree at Base 1.12.4
- xmalloc at Base 1.12.4
- xrealloc at Base 1.12.4
- xrle2 at Base 1.12.4
- xrle at Base 1.12.4
- zfclose at Base 1.13.1
- zfeof at Base 1.13.1
- zfgets at Base 1.13.1
- zfopen at Base 1.13.1
- zfpeek at Base 1.13.1
- zfputs at Base 1.13.1
- zfseeko at Base 1.13.1
- zftello at Base 1.13.1
- zlib_dehuff at Base 1.12.4
- zlib_huff at Base 1.12.4
- ztr2read at Base 1.12.4
- ztr_add_hcode at Base 1.12.4
- ztr_add_text at Base 1.12.4
- ztr_dup at Base 1.12.4
- ztr_find_chunks at Base 1.12.4
- ztr_find_hcode at Base 1.12.4
- ztr_find_hcode_chunk at Base 1.12.4
- ztr_lookup_mdata_value at Base 1.12.4
- ztr_new_chunk at Base 1.12.4
- ztr_process_text at Base 1.12.4
- ztr_read_chunk_hdr at Base 1.12.4
- ztr_read_header at Base 1.12.4
- ztr_store_hcodes at Base 1.12.4
Copied: trunk/packages/staden-io-lib/trunk/debian/libstaden-read1.symbols_old (from rev 19865, trunk/packages/staden-io-lib/trunk/debian/libstaden-read1.symbols)
===================================================================
--- trunk/packages/staden-io-lib/trunk/debian/libstaden-read1.symbols_old (rev 0)
+++ trunk/packages/staden-io-lib/trunk/debian/libstaden-read1.symbols_old 2015-08-07 14:17:54 UTC (rev 19874)
@@ -0,0 +1,676 @@
+libstaden-read.so.1 libstaden-read1 #MINVER#
+ ArrayCreate at Base 1.12.4
+ ArrayDestroy at Base 1.12.4
+ ArrayError at Base 1.12.4
+ ArrayErrorString at Base 1.12.4
+ ArrayExtend at Base 1.12.4
+ ArrayRef at Base 1.12.4
+ HashFileCreate at Base 1.12.4
+ HashFileDestroy at Base 1.12.4
+ HashFileExtract at Base 1.12.4
+ HashFileFopen at Base 1.12.4
+ HashFileLoad at Base 1.12.4
+ HashFileOpen at Base 1.12.4
+ HashFileQuery at Base 1.12.4
+ HashFileSave at Base 1.12.4
+ HashHsieh at Base 1.12.4
+ HashJenkins3 at Base 1.12.4
+ HashJenkins at Base 1.12.4
+ HashTableAdd at Base 1.12.4
+ HashTableCreate at Base 1.12.4
+ HashTableDel at Base 1.12.4
+ HashTableDestroy at Base 1.12.4
+ HashTableDump at Base 1.12.4
+ HashTableIterCreate at Base 1.12.4
+ HashTableIterDestroy at Base 1.12.4
+ HashTableIterNext at Base 1.12.4
+ HashTableIterReset at Base 1.12.4
+ HashTableNext at Base 1.12.4
+ HashTableNextInt at Base 1.13.7
+ HashTableRemove at Base 1.12.4
+ HashTableResize at Base 1.12.4
+ HashTableSearch at Base 1.12.4
+ HashTableStats at Base 1.12.4
+ HashTcl at Base 1.12.4
+ MD5_Final at Base 1.13.1
+ MD5_Init at Base 1.13.1
+ MD5_Update at Base 1.13.1
+ abi_reset_data_counts at Base 1.12.4
+ abi_set_data_counts at Base 1.12.4
+ append_int at Base 1.13.10
+ append_uint at Base 1.13.10
+ arith_compress at Base 1.13.5
+ arith_compress_O0 at Base 1.13.5
+ arith_compress_O1 at Base 1.13.5
+ arith_uncompress at Base 1.13.5
+ arith_uncompress_O0 at Base 1.13.5
+ arith_uncompress_O1 at Base 1.13.5
+ bam_add_raw at Base 1.13.2
+ bam_aux_A at Base 1.13.1
+ bam_aux_Z at Base 1.13.1
+ bam_aux_add at Base 1.13.1
+ bam_aux_add_data at Base 1.13.1
+ bam_aux_add_from_sam at Base 1.13.1
+ bam_aux_add_vec at Base 1.13.1
+ bam_aux_d at Base 1.13.1
+ bam_aux_f at Base 1.13.1
+ bam_aux_find at Base 1.13.1
+ bam_aux_i at Base 1.13.1
+ bam_aux_iter at Base 1.13.1
+ bam_aux_iter_full at Base 1.13.10
+ bam_aux_size_vec at Base 1.13.1
+ bam_close at Base 1.13.1
+ bam_construct_seq at Base 1.13.1
+ bam_copy at Base 1.13.2
+ bam_dup at Base 1.13.2
+ bam_get_seq at Base 1.13.1
+ bam_next_seq at Base 1.13.1
+ bam_open at Base 1.13.1
+ bam_put_seq at Base 1.13.1
+ bam_set_option at Base 1.13.2
+ bam_set_voption at Base 1.13.2
+ bam_write_header at Base 1.13.1
+ be_read_int_1 at Base 1.12.4
+ be_read_int_2 at Base 1.12.4
+ be_read_int_4 at Base 1.12.4
+ be_read_int_8 at Base 1.12.4
+ be_write_int_1 at Base 1.12.4
+ be_write_int_2 at Base 1.12.4
+ be_write_int_4 at Base 1.12.4
+ be_write_int_8 at Base 1.12.4
+ bgzf_decode_thread at Base 1.13.2
+ bgzf_encode_thread at Base 1.13.2
+ bit_reverse at Base 1.12.4
+ block_create at Base 1.12.4
+ block_destroy at Base 1.12.4
+ block_resize at Base 1.12.4
+ c2fstr at Base 1.12.4
+ calc_bit_lengths at Base 1.12.4
+ close_fofn at Base 1.12.4
+ codes2codeset at Base 1.12.4
+ compress_chunk at Base 1.12.4
+ compress_file at Base 1.12.4
+ compress_int2str at Base 1.12.4
+ compress_str2int at Base 1.12.4
+ compress_ztr at Base 1.12.4
+ compressed_file_exists at Base 1.12.4
+ conf2str at Base 1.12.4
+ construct_trace_name at Base 1.12.4
+ cram_beta_decode_char at Base 1.13.2
+ cram_beta_decode_free at Base 1.13.1
+ cram_beta_decode_init at Base 1.13.1
+ cram_beta_decode_int at Base 1.13.2
+ cram_beta_encode_char at Base 1.13.1
+ cram_beta_encode_free at Base 1.13.1
+ cram_beta_encode_init at Base 1.13.1
+ cram_beta_encode_int at Base 1.13.1
+ cram_beta_encode_store at Base 1.13.1
+ cram_block_method2str at Base 1.13.1
+ cram_byte_array_len_decode at Base 1.13.1
+ cram_byte_array_len_decode_free at Base 1.13.1
+ cram_byte_array_len_decode_init at Base 1.13.1
+ cram_byte_array_len_encode at Base 1.13.1
+ cram_byte_array_len_encode_free at Base 1.13.1
+ cram_byte_array_len_encode_init at Base 1.13.1
+ cram_byte_array_len_encode_store at Base 1.13.1
+ cram_byte_array_stop_decode_block at Base 1.13.1
+#MISSING: 1.13.7# cram_byte_array_stop_decode_char at Base 1.13.1
+ cram_byte_array_stop_decode_free at Base 1.13.1
+ cram_byte_array_stop_decode_init at Base 1.13.1
+ cram_byte_array_stop_encode at Base 1.13.1
+ cram_byte_array_stop_encode_free at Base 1.13.1
+ cram_byte_array_stop_encode_init at Base 1.13.1
+ cram_byte_array_stop_encode_store at Base 1.13.1
+ cram_close at Base 1.13.1
+ cram_codec_to_id at Base 1.13.7
+ cram_compress_block at Base 1.13.1
+ cram_content_type2str at Base 1.13.1
+ cram_decode_TD at Base 1.13.1
+ cram_decode_compression_header at Base 1.13.1
+ cram_decode_slice at Base 1.13.1
+ cram_decode_slice_header at Base 1.13.1
+ cram_decode_slice_mt at Base 1.13.2
+ cram_decode_slice_thread at Base 1.13.2
+ cram_decoder_init at Base 1.13.1
+ cram_dependent_data_series at Base 1.13.7
+ cram_encode_compression_header at Base 1.13.1
+ cram_encode_container at Base 1.13.1
+ cram_encode_slice_header at Base 1.13.1
+ cram_encoder_init at Base 1.13.1
+ cram_encoding2str at Base 1.13.1
+ cram_eof at Base 1.13.1
+#MISSING: 1.13.7# cram_external_decode_block at Base 1.13.1
+ cram_external_decode_char at Base 1.13.1
+ cram_external_decode_free at Base 1.13.1
+ cram_external_decode_init at Base 1.13.1
+ cram_external_decode_int at Base 1.13.1
+#MISSING: 1.13.7# cram_external_encode at Base 1.13.1
+ cram_external_encode_char at Base 1.13.7
+ cram_external_encode_free at Base 1.13.1
+ cram_external_encode_init at Base 1.13.1
+ cram_external_encode_int at Base 1.13.7
+ cram_external_encode_store at Base 1.13.1
+ cram_flush at Base 1.13.1
+ cram_flush_container at Base 1.13.1
+ cram_flush_container_mt at Base 1.13.2
+ cram_flush_thread at Base 1.13.2
+ cram_free_block at Base 1.13.1
+ cram_free_compression_header at Base 1.13.1
+ cram_free_container at Base 1.13.1
+ cram_free_file_def at Base 1.13.1
+ cram_free_slice at Base 1.13.1
+ cram_free_slice_header at Base 1.13.1
+ cram_gamma_decode at Base 1.13.1
+ cram_gamma_decode_free at Base 1.13.1
+ cram_gamma_decode_init at Base 1.13.1
+ cram_get_bam_seq at Base 1.13.1
+ cram_get_ref at Base 1.13.1
+ cram_get_seq at Base 1.13.1
+ cram_huffman_decode_char0 at Base 1.13.1
+ cram_huffman_decode_char at Base 1.13.1
+ cram_huffman_decode_free at Base 1.13.1
+ cram_huffman_decode_init at Base 1.13.1
+ cram_huffman_decode_int0 at Base 1.13.1
+ cram_huffman_decode_int at Base 1.13.1
+ cram_huffman_encode_char0 at Base 1.13.1
+ cram_huffman_encode_char at Base 1.13.1
+ cram_huffman_encode_free at Base 1.13.1
+ cram_huffman_encode_init at Base 1.13.1
+ cram_huffman_encode_int0 at Base 1.13.1
+ cram_huffman_encode_int at Base 1.13.1
+ cram_huffman_encode_store at Base 1.13.1
+ cram_index_build at Base 1.13.7
+ cram_index_free at Base 1.13.1
+ cram_index_load at Base 1.13.1
+ cram_index_load_via_callbacks at Base 1.13.10
+ cram_index_query at Base 1.13.1
+ cram_io_close at Base 1.13.10
+ cram_io_input_buffer_fgets at Base 1.13.10
+ cram_io_input_buffer_read at Base 1.13.10
+ cram_io_input_buffer_seek at Base 1.13.10
+ cram_io_input_buffer_underflow at Base 1.13.10
+ cram_io_open at Base 1.13.10
+ cram_io_open_by_callbacks at Base 1.13.10
+ cram_load_reference at Base 1.13.1
+ cram_new_block at Base 1.13.1
+ cram_new_compression_header at Base 1.13.1
+ cram_new_container at Base 1.13.1
+ cram_new_metrics at Base 1.13.1
+ cram_new_slice at Base 1.13.1
+ cram_open at Base 1.13.1
+ cram_open_by_callbacks at Base 1.13.10
+ cram_put_bam_seq at Base 1.13.1
+ cram_read_SAM_hdr at Base 1.13.1
+ cram_read_block at Base 1.13.1
+ cram_read_container at Base 1.13.1
+ cram_read_file_def at Base 1.13.1
+ cram_read_slice at Base 1.13.1
+ cram_ref_decr at Base 1.13.2
+ cram_ref_incr at Base 1.13.2
+ cram_ref_load at Base 1.13.2
+ cram_seek at Base 1.13.1
+ cram_seek_to_refpos at Base 1.13.1
+ cram_set_option at Base 1.13.1
+ cram_set_voption at Base 1.13.1
+ cram_stats_add at Base 1.13.1
+ cram_stats_create at Base 1.13.1
+ cram_stats_del at Base 1.13.1
+ cram_stats_dump at Base 1.13.1
+ cram_stats_encoding at Base 1.13.1
+ cram_stats_free at Base 1.13.1
+ cram_subexp_decode at Base 1.13.1
+ cram_subexp_decode_free at Base 1.13.1
+ cram_subexp_decode_init at Base 1.13.1
+ cram_uncompress_block at Base 1.13.1
+ cram_write_SAM_hdr at Base 1.13.1
+ cram_write_block at Base 1.13.1
+ cram_write_container at Base 1.13.1
+ cram_write_file_def at Base 1.13.1
+#MISSING: 1.13.3-1# ctfFRead at Base 1.12.4
+#MISSING: 1.13.3-1# ctfFWrite at Base 1.12.4
+ decode_sff_common_header at Base 1.12.4
+ decode_sff_read_header at Base 1.12.4
+ decorrelate1 at Base 1.12.4
+ decorrelate1dyn at Base 1.12.4
+ decorrelate2 at Base 1.12.4
+ decorrelate2dyn at Base 1.12.4
+ decorrelate4 at Base 1.12.4
+ delete_ztr at Base 1.12.4
+ determine_trace_type at Base 1.12.4
+ dstring_append at Base 1.13.1
+ dstring_append_char at Base 1.13.1
+ dstring_append_hex_encoded at Base 1.13.1
+ dstring_append_int at Base 1.13.1
+ dstring_appendf at Base 1.13.1
+ dstring_create at Base 1.13.1
+ dstring_create_with at Base 1.13.1
+ dstring_delete at Base 1.13.1
+ dstring_destroy at Base 1.13.1
+ dstring_dinsert at Base 1.13.1
+ dstring_dreplace at Base 1.13.1
+ dstring_empty at Base 1.13.1
+ dstring_escape_html at Base 1.13.1
+ dstring_find at Base 1.13.1
+ dstring_find_replace at Base 1.13.1
+ dstring_find_replace_all at Base 1.13.1
+ dstring_htmlise_links at Base 1.13.1
+ dstring_insert at Base 1.13.1
+ dstring_insertf at Base 1.13.1
+ dstring_length at Base 1.13.1
+ dstring_nappend at Base 1.13.1
+ dstring_ninsert at Base 1.13.1
+ dstring_nprepend at Base 1.13.1
+ dstring_perror at Base 1.13.1
+ dstring_prepend at Base 1.13.1
+ dstring_prependf at Base 1.13.1
+ dstring_refresh_length at Base 1.13.1
+ dstring_replace at Base 1.13.1
+ dstring_resize at Base 1.13.1
+ dstring_str at Base 1.13.1
+ dstring_to_html at Base 1.13.1
+ dstring_vinsertf at Base 1.13.1
+ dump_labels at Base 1.12.4
+ eflt_feature_ids at Base 1.12.4
+ encode_sff_common_header at Base 1.12.4
+ encode_sff_read_header at Base 1.12.4
+ errout at Base 1.12.4
+ exp2read at Base 1.12.4
+ exp_close at Base 1.12.4
+ exp_create_info at Base 1.12.4
+ exp_create_range at Base 1.12.4
+ exp_destroy_info at Base 1.12.4
+ exp_extract_range at Base 1.12.4
+ exp_fread_info at Base 1.12.4
+ exp_get_feature_index at Base 1.12.4
+ exp_get_int at Base 1.12.4
+ exp_get_rng at Base 1.12.4
+ exp_get_str at Base 1.12.4
+ exp_mfread_info at Base 1.12.4
+ exp_print_file at Base 1.12.4
+ exp_print_line at Base 1.12.4
+ exp_print_mfile at Base 1.12.4
+ exp_print_mline at Base 1.12.4
+ exp_print_seq at Base 1.12.4
+ exp_put_int at Base 1.12.4
+ exp_put_rng at Base 1.12.4
+ exp_put_str at Base 1.12.4
+ exp_read_info at Base 1.12.4
+ exp_set_entry at Base 1.12.4
+ expand_8to16 at Base 1.12.4
+ expand_8to32 at Base 1.12.4
+ expand_cache_path at Base 1.13.1
+ expcr_ at Base 1.12.4
+ exper_ at Base 1.12.4
+ expkil_ at Base 1.12.4
+ expopn_ at Base 1.12.4
+ expri_ at Base 1.12.4
+ exprr_ at Base 1.12.4
+ exprs_ at Base 1.12.4
+ exprsa_ at Base 1.12.4
+ expwi_ at Base 1.12.4
+ expwr_ at Base 1.12.4
+ expws_ at Base 1.12.4
+ expwsa_ at Base 1.12.4
+ f2cstr at Base 1.12.4
+ fcompress_file at Base 1.12.4
+ fdetermine_trace_type at Base 1.12.4
+ file_exists at Base 1.12.4
+ file_size at Base 1.12.4
+ find_file_url at Base 1.13.1
+ flen at Base 1.12.4
+ follow1 at Base 1.12.4
+ fopen_compressed at Base 1.12.4
+ fread_abi at Base 1.12.4
+ fread_alf at Base 1.12.4
+#MISSING: 1.13.3-1# fread_ctf at Base 1.12.4
+ fread_pln at Base 1.12.4
+ fread_reading at Base 1.12.4
+ fread_scf at Base 1.12.4
+ fread_ztr at Base 1.12.4
+ free_sff_common_header at Base 1.12.4
+ free_sff_read_data at Base 1.12.4
+ free_sff_read_header at Base 1.12.4
+ freopen_compressed at Base 1.12.4
+ fstrlen at Base 1.12.4
+ fwrite_abi at Base 1.12.4
+ fwrite_alf at Base 1.12.4
+#MISSING: 1.13.3-1# fwrite_ctf at Base 1.12.4
+ fwrite_pln at Base 1.12.4
+ fwrite_reading at Base 1.12.4
+ fwrite_scf at Base 1.12.4
+ fwrite_ztr at Base 1.12.4
+ generate_code_set at Base 1.12.4
+ getABIIndexEntryLW at Base 1.12.4
+ getABIIndexEntrySW at Base 1.12.4
+ getABIIndexOffset at Base 1.12.4
+ getABIString at Base 1.12.4
+ getABIint1 at Base 1.12.4
+ getABIint2 at Base 1.12.4
+ getABIint4 at Base 1.12.4
+ get_compression_method at Base 1.12.4
+ get_read_conf at Base 1.12.4
+ hash64 at Base 1.12.4
+ hash at Base 1.12.4
+ huffman_codes_destroy at Base 1.12.4
+ huffman_codeset_destroy at Base 1.12.4
+ huffman_decode at Base 1.12.4
+ huffman_multi_decode at Base 1.12.4
+ huffman_multi_encode at Base 1.12.4
+ ichebcomp at Base 1.12.4
+ ichebuncomp at Base 1.12.4
+ init_decode_tables at Base 1.12.4
+ int32_decode at Base 1.13.1
+ int32_encode at Base 1.13.1
+ int32_get at Base 1.13.1
+ int32_put at Base 1.13.1
+ int_to_float at Base 1.12.4
+ iolib_get_exp_path at Base 1.12.4
+ iolib_get_trace_path at Base 1.12.4
+ iolib_set_exp_path at Base 1.12.4
+ iolib_set_trace_path at Base 1.12.4
+ is_directory at Base 1.12.4
+ is_file at Base 1.12.4
+ is_scf at Base 1.12.4
+ itf8_decode at Base 1.13.1
+ itf8_encode at Base 1.13.1
+ itf8_put_blk at Base 1.13.1
+ le_read_int_1 at Base 1.12.4
+ le_read_int_2 at Base 1.12.4
+ le_read_int_4 at Base 1.12.4
+ le_read_int_8 at Base 1.12.4
+ le_write_int_1 at Base 1.12.4
+ le_write_int_2 at Base 1.12.4
+ le_write_int_4 at Base 1.12.4
+ le_write_int_8 at Base 1.12.4
+ load_ref_portion at Base 1.13.10
+ log2_data at Base 1.12.4
+ ltf8_decode at Base 1.13.1
+ ltf8_get at Base 1.13.1
+ ltf8_put at Base 1.13.1
+ memgunzip at Base 1.12.4
+ memgzip at Base 1.12.4
+ mfascii at Base 1.12.4
+ mfclose at Base 1.12.4
+ mfcreate at Base 1.12.4
+ mfcreate_from at Base 1.12.4
+ mfdestroy at Base 1.12.4
+ mfdetach at Base 1.12.4
+ mfeof at Base 1.12.4
+ mfflush at Base 1.12.4
+ mfgetc at Base 1.12.4
+ mfgets at Base 1.12.4
+ mfopen at Base 1.12.4
+ mfprintf at Base 1.12.4
+ mfread at Base 1.12.4
+ mfread_abi at Base 1.12.4
+ mfread_alf at Base 1.12.4
+#MISSING: 1.13.3-1# mfread_ctf at Base 1.12.4
+ mfread_pln at Base 1.12.4
+ mfread_reading at Base 1.12.4
+ mfread_scf at Base 1.12.4
+ mfread_sff at Base 1.12.4
+ mfread_ztr at Base 1.12.4
+ mfrecreate at Base 1.12.4
+ mfreopen at Base 1.12.4
+ mfseek at Base 1.12.4
+ mfsteal at Base 1.13.5
+ mftell at Base 1.12.4
+ mftruncate at Base 1.12.4
+ mfwrite at Base 1.12.4
+ mfwrite_abi at Base 1.12.4
+ mfwrite_alf at Base 1.12.4
+#MISSING: 1.13.3-1# mfwrite_ctf at Base 1.12.4
+ mfwrite_pln at Base 1.12.4
+ mfwrite_reading at Base 1.12.4
+ mfwrite_scf at Base 1.12.4
+ mfwrite_ztr at Base 1.12.4
+ mkdir_prefix at Base 1.13.1
+ mrewind at Base 1.12.4
+ mstderr at Base 1.12.4
+ mstdin at Base 1.12.4
+ mstdout at Base 1.12.4
+ mungetc at Base 1.12.4
+ myfind at Base 1.12.4
+ mystrtok at Base 1.12.4
+ new_ztr at Base 1.12.4
+ next_symbol at Base 1.12.4
+ open_exp_file at Base 1.12.4
+ open_exp_mfile at Base 1.12.4
+ open_fofn at Base 1.12.4
+ open_path_file at Base 1.12.4
+ open_path_mfile at Base 1.12.4
+ open_trace_file at Base 1.12.4
+ open_trace_mfile at Base 1.12.4
+ opos2str at Base 1.12.4
+ pack_trace_suffix at Base 1.12.4
+ paranoid_fclose at Base 1.13.1
+ partial_decode_ztr at Base 1.12.4
+ pool_alloc at Base 1.12.4
+ pool_create at Base 1.12.4
+ pool_destroy at Base 1.12.4
+ pool_free at Base 1.12.4
+ qshift at Base 1.12.4
+ rans_compress at Base 1.13.5
+ rans_compress_O0 at Base 1.13.5
+ rans_compress_O1 at Base 1.13.5
+ rans_uncompress at Base 1.13.5
+ rans_uncompress_O0 at Base 1.13.5
+ rans_uncompress_O1 at Base 1.13.5
+ read2exp at Base 1.12.4
+ read2scf at Base 1.12.4
+ read2ztr at Base 1.12.4
+ read_abi at Base 1.12.4
+ read_alf at Base 1.12.4
+ read_allocate at Base 1.12.4
+#MISSING: 1.13.3-1# read_ctf at Base 1.12.4
+ read_deallocate at Base 1.12.4
+ read_dup at Base 1.12.4
+ read_experiment_redirect at Base 1.12.4
+ read_fofn at Base 1.12.4
+ read_pln at Base 1.12.4
+ read_reading at Base 1.12.4
+ read_scf at Base 1.12.4
+ read_scf_base at Base 1.12.4
+ read_scf_bases3 at Base 1.12.4
+ read_scf_bases at Base 1.12.4
+ read_scf_comment at Base 1.12.4
+ read_scf_header at Base 1.12.4
+ read_scf_sample1 at Base 1.12.4
+ read_scf_sample2 at Base 1.12.4
+ read_scf_samples1 at Base 1.12.4
+ read_scf_samples2 at Base 1.12.4
+ read_scf_samples31 at Base 1.12.4
+ read_scf_samples32 at Base 1.12.4
+ read_sections at Base 1.12.4
+ read_sff_common_header at Base 1.12.4
+ read_sff_read_data at Base 1.12.4
+ read_sff_read_header at Base 1.12.4
+ read_update_base_positions at Base 1.12.4
+ read_update_confidence_values at Base 1.12.4
+ recorrelate1 at Base 1.12.4
+ recorrelate2 at Base 1.12.4
+ recorrelate4 at Base 1.12.4
+ refs2id at Base 1.13.1
+ refs_free at Base 1.13.2
+ refs_load_fai at Base 1.13.10
+ remove_extension at Base 1.12.4
+ remove_file at Base 1.12.4
+ restore_codes at Base 1.12.4
+ restore_codes_single at Base 1.12.4
+ rle at Base 1.12.4
+ sam_hdr_PG_ID at Base 1.13.1
+ sam_hdr_add at Base 1.13.1
+ sam_hdr_add_PG at Base 1.13.1
+ sam_hdr_add_lines at Base 1.13.1
+ sam_hdr_decr_ref at Base 1.13.2
+ sam_hdr_dump at Base 1.13.1
+ sam_hdr_dup at Base 1.13.1
+ sam_hdr_find at Base 1.13.1
+ sam_hdr_find_key at Base 1.13.1
+ sam_hdr_find_line at Base 1.13.1
+ sam_hdr_find_rg at Base 1.13.1
+ sam_hdr_free at Base 1.13.1
+ sam_hdr_incr_ref at Base 1.13.2
+ sam_hdr_length at Base 1.13.1
+ sam_hdr_link_pg at Base 1.13.1
+ sam_hdr_name2ref at Base 1.13.1
+ sam_hdr_new at Base 1.13.1
+ sam_hdr_parse at Base 1.13.1
+ sam_hdr_rebuild at Base 1.13.1
+ sam_hdr_sort_order at Base 1.13.10
+ sam_hdr_str at Base 1.13.1
+ sam_hdr_update at Base 1.13.1
+ sam_hdr_vadd at Base 1.13.1
+ scf2read at Base 1.12.4
+ scf_allocate at Base 1.12.4
+ scf_deallocate at Base 1.12.4
+ scf_delta_samples1 at Base 1.12.4
+ scf_delta_samples2 at Base 1.12.4
+ scf_version_float2str at Base 1.12.4
+ scf_version_str2float at Base 1.12.4
+ scram_close at Base 1.13.1
+ scram_get_header at Base 1.13.1
+ scram_get_refs at Base 1.13.1
+ scram_get_seq at Base 1.13.1
+ scram_input_bam_block at Base 1.13.2
+ scram_line at Base 1.13.2
+ scram_next_seq at Base 1.13.1
+ scram_open at Base 1.13.1
+ scram_open_cram_via_callbacks at Base 1.13.10
+ scram_put_seq at Base 1.13.1
+ scram_set_header at Base 1.13.1
+ scram_set_option at Base 1.13.1
+ scram_set_refs at Base 1.13.1
+ scram_write_header at Base 1.13.1
+ set_compression_method at Base 1.12.4
+ set_scf_version at Base 1.12.4
+ shrink_16to8 at Base 1.12.4
+ shrink_32to8 at Base 1.12.4
+ srf_construct_cont_hdr at Base 1.12.4
+ srf_construct_trace_body at Base 1.12.4
+ srf_construct_trace_hdr at Base 1.12.4
+ srf_create at Base 1.12.4
+ srf_destroy at Base 1.12.4
+ srf_destroy_cont_hdr at Base 1.12.4
+ srf_destroy_trace_body at Base 1.12.4
+ srf_destroy_trace_hdr at Base 1.12.4
+ srf_find_trace at Base 1.12.4
+ srf_index_add_cont_hdr at Base 1.12.4
+ srf_index_add_trace_body at Base 1.12.4
+ srf_index_add_trace_hdr at Base 1.12.4
+ srf_index_create at Base 1.12.4
+ srf_index_destroy at Base 1.12.4
+ srf_index_stats at Base 1.12.4
+ srf_index_write at Base 1.12.4
+ srf_next_block_details at Base 1.12.4
+ srf_next_block_type at Base 1.12.4
+ srf_next_trace at Base 1.12.4
+ srf_next_ztr at Base 1.12.4
+ srf_next_ztr_flags at Base 1.12.4
+ srf_open at Base 1.12.4
+ srf_read_cont_hdr at Base 1.12.4
+ srf_read_index_hdr at Base 1.12.4
+ srf_read_pstring at Base 1.12.4
+ srf_read_trace_body at Base 1.12.4
+ srf_read_trace_hdr at Base 1.12.4
+ srf_read_uint32 at Base 1.12.4
+ srf_read_uint64 at Base 1.12.4
+ srf_read_xml at Base 1.12.4
+ srf_write_cont_hdr at Base 1.12.4
+ srf_write_index_hdr at Base 1.12.4
+ srf_write_pstring at Base 1.12.4
+ srf_write_pstringb at Base 1.12.4
+ srf_write_trace_body at Base 1.12.4
+ srf_write_trace_hdr at Base 1.12.4
+ srf_write_uint32 at Base 1.12.4
+ srf_write_uint64 at Base 1.12.4
+ srf_write_xml at Base 1.12.4
+ sthuff at Base 1.12.4
+ store_bytes at Base 1.12.4
+ store_codes at Base 1.12.4
+ store_codes_single at Base 1.12.4
+ str2conf at Base 1.12.4
+ str2opos at Base 1.12.4
+ str_tolower at Base 1.12.4
+ str_toupper at Base 1.12.4
+ string_alloc at Base 1.13.1
+ string_dup at Base 1.13.1
+ string_ndup at Base 1.13.1
+ string_pool_create at Base 1.13.1
+ string_pool_destroy at Base 1.13.1
+ stringify_argv at Base 1.13.1
+ t_pool_delete_result at Base 1.13.2
+ t_pool_destroy at Base 1.13.2
+ t_pool_dispatch2 at Base 1.13.2
+ t_pool_dispatch at Base 1.13.2
+ t_pool_flush at Base 1.13.2
+ t_pool_init at Base 1.13.2
+ t_pool_next_result at Base 1.13.2
+ t_pool_next_result_wait at Base 1.13.2
+ t_pool_results_queue_empty at Base 1.13.2
+ t_pool_results_queue_len at Base 1.13.2
+ t_pool_results_queue_sz at Base 1.13.2
+ t_results_queue_destroy at Base 1.13.2
+ t_results_queue_init at Base 1.13.2
+ tokenise_search_path at Base 1.13.1
+ trace_type_int2str at Base 1.12.4
+ trace_type_str2int at Base 1.12.4
+ trace_type_str at Base 1.12.4
+ tshift at Base 1.12.4
+ uncompress_chunk at Base 1.12.4
+ uncompress_ztr at Base 1.12.4
+ unfollow1 at Base 1.12.4
+ unlog2_data at Base 1.12.4
+ unqshift at Base 1.12.4
+ unrle at Base 1.12.4
+ unsthuff at Base 1.12.4
+ untshift at Base 1.12.4
+ unxrle2 at Base 1.12.4
+ unxrle at Base 1.12.4
+ vflen at Base 1.12.4
+ write_abi at Base 1.12.4
+ write_alf at Base 1.12.4
+#MISSING: 1.13.3-1# write_ctf at Base 1.12.4
+ write_pln at Base 1.12.4
+ write_reading at Base 1.12.4
+ write_scf at Base 1.12.4
+ write_scf_base at Base 1.12.4
+ write_scf_bases3 at Base 1.12.4
+ write_scf_bases at Base 1.12.4
+ write_scf_comment at Base 1.12.4
+ write_scf_header at Base 1.12.4
+ write_scf_sample1 at Base 1.12.4
+ write_scf_sample2 at Base 1.12.4
+ write_scf_samples1 at Base 1.12.4
+ write_scf_samples2 at Base 1.12.4
+ write_scf_samples31 at Base 1.12.4
+ write_scf_samples32 at Base 1.12.4
+ xcalloc at Base 1.12.4
+ xfree at Base 1.12.4
+ xmalloc at Base 1.12.4
+ xrealloc at Base 1.12.4
+ xrle2 at Base 1.12.4
+ xrle at Base 1.12.4
+ zfclose at Base 1.13.1
+ zfeof at Base 1.13.1
+ zfgets at Base 1.13.1
+ zfopen at Base 1.13.1
+ zfpeek at Base 1.13.1
+ zfputs at Base 1.13.1
+ zfseeko at Base 1.13.1
+ zftello at Base 1.13.1
+ zlib_dehuff at Base 1.12.4
+ zlib_huff at Base 1.12.4
+ ztr2read at Base 1.12.4
+ ztr_add_hcode at Base 1.12.4
+ ztr_add_text at Base 1.12.4
+ ztr_dup at Base 1.12.4
+ ztr_find_chunks at Base 1.12.4
+ ztr_find_hcode at Base 1.12.4
+ ztr_find_hcode_chunk at Base 1.12.4
+ ztr_lookup_mdata_value at Base 1.12.4
+ ztr_new_chunk at Base 1.12.4
+ ztr_process_text at Base 1.12.4
+ ztr_read_chunk_hdr at Base 1.12.4
+ ztr_read_header at Base 1.12.4
+ ztr_store_hcodes at Base 1.12.4
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