[med-svn] [wgs-assembler] branch master updated (4f73c15 -> a4faa0f)
Afif Elghraoui
afif-guest at moszumanska.debian.org
Sat Aug 8 07:38:05 UTC 2015
This is an automated email from the git hooks/post-receive script.
afif-guest pushed a change to branch master
in repository wgs-assembler.
from 4f73c15 Merge tag 'upstream/8.1'
new b5f3fc4 Fix d/watch repack suffix
new 5ff73e5 Update files-excluded in d/copyright
new 2216ed2 Claim changelog and update version
new 4494394 Modify d/watch to detect release candidates
new 7cbc871 Imported Upstream version 8.3rc2+ds1
new 947f954 Merge tag 'upstream/8.3rc2+ds1'
new 422411b Remove packaging of kmer convenience copy and add dependency instead
new bac8247 Add myself to uploaders
new 3010105 Bump Standards Version to 3.9.6
new 2ee8c35 Use dpkg-provided DEB_SOURCE variable rather than manually parsing changelog
new 4da0c15 Pass buildflags to the source's makefile
new a4faa0f Create a TODO list
The 12 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
README | 785 ++-
debian/TODO | 7 +
debian/changelog | 11 +-
debian/control | 34 +-
debian/copyright | 2 +-
debian/libwgs-kmer-dev.install | 2 -
debian/rules | 19 +-
debian/watch | 4 +-
debian/wgs-kmer.install | 1 -
kmer/Make.include | 30 -
kmer/Make.rules | 316 -
kmer/Makefile | 194 -
kmer/configure.sh | 382 --
kmer/libbio/Make.include | 65 -
kmer/libbio/alphabet-acgtspace.c | 149 -
kmer/libbio/alphabet-colorspace.c | 121 -
kmer/libbio/alphabet-generate.c | 134 -
kmer/libbio/alphabet.c | 271 -
kmer/libbio/alphabet.h | 25 -
kmer/libbio/bio++.H | 23 -
kmer/libbio/bio.h | 47 -
kmer/libbio/halign.c | 467 --
kmer/libbio/kmer.C | 497 --
kmer/libbio/kmer.H | 160 -
kmer/libbio/kmerhuge.H | 396 --
kmer/libbio/kmeriface.H | 83 -
kmer/libbio/kmertiny.H | 147 -
kmer/libbio/merCovering.H | 353 --
kmer/libbio/merList.H | 94 -
kmer/libbio/mers.h | 63 -
kmer/libbio/reversecomplement.c | 44 -
kmer/libbio/test/Makefile | 98 -
kmer/libbio/test/halign-test.C | 48 -
kmer/libbio/test/test-bigmer-msf.C | 222 -
kmer/libbio/test/test-setbits.C | 28 -
kmer/libkmer/Make.include | 35 -
kmer/libkmer/driver-existDB.C | 227 -
kmer/libkmer/driver-posDB.C | 287 -
kmer/libkmer/existDB-create-from-fasta.C | 270 -
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kmer/libkmer/existDB-state.C | 205 -
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