[med-svn] [python-pbcore] branch master updated (b6a9edd -> 8574ffb)

[Afif Elghraoui]

This is an automated email from the git hooks/post-receive script.

afif-guest pushed a change to branch master
in repository python-pbcore.

      from  b6a9edd   Add override for clean target in d/rules
       new  dafea9c   Drop non-functional python3 package
       new  68a3ebb   Remove executable bit from installed h5 data files
       new  10a2a68   Install upstream readme and changelog files
       new  cd3bf35   Imported Upstream version 1.2.2+dfsg1
       new  74b076b   Merge tag 'upstream/1.2.2+dfsg1'
       new  30c724c   Update version in changelog
       new  b3b0948   Remove executable bit from non-executable file
       new  fcb7bb9   Install upstream-provided convenience scripts
       new  16e3ec5   Refresh patch
       new  b20eeb0   Install upstream changelog and readme in main package (not doc package)
       new  8574ffb   Fix changelog file name

The 11 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 CHANGELOG.org                                      |    7 +
 bin/dataset.py                                     |    2 +
 debian/README.Debian                               |   13 +
 debian/changelog                                   |    2 +-
 debian/control                                     |   46 +-
 debian/patches/enable-build-time-testing.patch     |   10 +-
 debian/patches/remove-convenience-script.patch     |   21 -
 debian/patches/series                              |    2 -
 debian/patches/support-python3.patch               |   38 -
 debian/python-pbcore-data.install                  |    1 -
 debian/python-pbcore.docs                          |    1 +
 debian/python-pbcore.links                         |    1 -
 debian/python-pbcore.pyremove                      |    1 -
 debian/python3-pbcore.links                        |    1 -
 debian/python3-pbcore.pyremove                     |    1 -
 debian/rules                                       |   18 +-
 debian/tests/control                               |    8 +-
 pbcore/__init__.py                                 |    2 +-
 pbcore/data/Makefile                               |    7 +
 pbcore/data/datasets/__init__.py                   |    6 +-
 pbcore/data/datasets/alignment.dataset.xml         |    8 +
 .../datasets/m150430_142051_Mon_p1_b25.sts.xml     |    1 +
 ...100710482550000001823136404221563_s1_p0.sts.xml |    1 +
 pbcore/data/datasets/pbalchemysim0.reference.xml   |   79 +-
 pbcore/data/datasets/subreadSetWithStats.xml       | 1139 +++++++++++++++-
 pbcore/io/FastaIO.py                               |    2 +-
 pbcore/io/align/PacBioBamIndex.py                  |   83 +-
 pbcore/io/dataset/DataSetIO.py                     | 1400 ++++++++++++++------
 pbcore/io/dataset/DataSetMembers.py                |  206 ++-
 pbcore/io/dataset/DataSetReader.py                 |  233 ++--
 pbcore/io/dataset/DataSetValidator.py              |   53 +-
 pbcore/io/dataset/DataSetWriter.py                 |   19 +-
 pbcore/io/dataset/EntryPoints.py                   |   53 +-
 pbcore/util/ToolRunner.py                          |    3 +
 tests/test_pbdataset.py                            |  205 ++-
 tests/test_pbdataset_subtypes.py                   |  174 ++-
 36 files changed, 3036 insertions(+), 811 deletions(-)
 create mode 100644 debian/README.Debian
 delete mode 100644 debian/patches/remove-convenience-script.patch
 delete mode 100644 debian/patches/support-python3.patch
 delete mode 100644 debian/python-pbcore-data.install
 create mode 100644 debian/python-pbcore.docs
 delete mode 100644 debian/python-pbcore.links
 delete mode 100644 debian/python-pbcore.pyremove
 delete mode 100644 debian/python3-pbcore.links
 delete mode 100644 debian/python3-pbcore.pyremove
 create mode 100644 pbcore/data/datasets/m150430_142051_Mon_p1_b25.sts.xml
 create mode 100755 pbcore/data/datasets/m150616_053259_ethan_c100710482550000001823136404221563_s1_p0.sts.xml

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/python-pbcore.git