[med-svn] [python-pbh5tools] 02/10: Remove plaintext help files

[Afif Elghraoui]

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afif-guest pushed a commit to branch master
in repository python-pbh5tools.

commit 979d878be80e9ae2f9f314ec9d13bc40c2d8a063
Author: Afif Elghraoui <afif at ghraoui.name>
Date:   Sat Aug 15 11:57:31 2015 -0700

    Remove plaintext help files
---
 debian/bash5tools.md | 34 ----------------------------------
 debian/cmph5tools.md | 26 --------------------------
 2 files changed, 60 deletions(-)

diff --git a/debian/bash5tools.md b/debian/bash5tools.md
deleted file mode 100644
index 8e3d99b..0000000
--- a/debian/bash5tools.md
+++ /dev/null
@@ -1,34 +0,0 @@
-usage: bash5tools [-h] [--verbose] [--version] [--profile] [--debug]
-                  [--outFilePrefix OUTFILEPREFIX]
-                  [--readType {ccs,subreads,unrolled}] [--outType OUTTYPE]
-                  [--minLength MINLENGTH] [--minReadScore MINREADSCORE]
-                  [--minPasses MINPASSES]
-                  input.bas.h5
-
-Tool for extracting data from .bas.h5 files
-
-positional arguments:
-  input.bas.h5          input .bas.h5 filename
-
-optional arguments:
-  -h, --help            show this help message and exit
-  --verbose, -v         Set the verbosity level (default: None)
-  --version             show program's version number and exit
-  --profile             Print runtime profile at exit (default: False)
-  --debug               Catch exceptions in debugger (requires ipdb) (default:
-                        False)
-  --outFilePrefix OUTFILEPREFIX
-                        output filename prefix [None]
-  --readType {ccs,subreads,unrolled}
-                        read type (ccs, subreads, or unrolled) []
-  --outType OUTTYPE     output file type (fasta, fastq) [fasta]
-
-Read filtering arguments:
-  --minLength MINLENGTH
-                        min read length [0]
-  --minReadScore MINREADSCORE
-                        min read score, valid only with
-                        --readType={unrolled,subreads} [0]
-  --minPasses MINPASSES
-                        min number of CCS passes, valid only with
-                        --readType=ccs [0]
diff --git a/debian/cmph5tools.md b/debian/cmph5tools.md
deleted file mode 100644
index 32c3abc..0000000
--- a/debian/cmph5tools.md
+++ /dev/null
@@ -1,26 +0,0 @@
-usage: cmph5tools [-h] [--verbose] [--version] [--profile] [--debug]
-                  {select,merge,sort,equal,summarize,stats,listMetrics,validate}
-                  ...
-
-Toolkit for command-line tools associated with cmp.h5 file processing. Notes:
-For all command-line arguments, default values are listed in [].
-
-positional arguments:
-  {select,merge,sort,equal,summarize,stats,listMetrics,validate}
-    select              Create new cmp.h5 files from selections of
-                        input.cmp.h5
-    merge               Merge input.cmp.h5 files into out.cmp.h5
-    sort                Sort input.cmp.h5 file
-    equal               Compare two cmp.h5 files for equivalence
-    summarize           Summarize contents of cmp.h5 files
-    stats               Compute statistics from input.cmp.h5
-    listMetrics         List available metrics
-    validate            Validate input.cmp.h5
-
-optional arguments:
-  -h, --help            show this help message and exit
-  --verbose, -v         Set the verbosity level (default: None)
-  --version             show program's version number and exit
-  --profile             Print runtime profile at exit (default: False)
-  --debug               Catch exceptions in debugger (requires ipdb) (default:
-                        False)

-- 
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