[med-svn] [python-cobra] branch debian/jessie updated (fe42d7c -> 992446c)

[Afif Elghraoui]

This is an automated email from the git hooks/post-receive script.

afif-guest pushed a change to branch debian/jessie
in repository python-cobra.

      from  fe42d7c   Upload to jessie-backports
      adds  252895d   Appropriately change some 'recommends' to 'suggests'
      adds  d83ae9e   Adjust package relationships as requested by upstream
      adds  4aa43cd   Make matplotlib suggested and pandas recommended as advised by upstream
      adds  eb3fb84   Imported Upstream version 0.4.0b2
      adds  68334d9   Merge tag 'upstream/0.4.0b2'
      adds  86676fc   Add new changelog entry
      adds  ab93ecd   Prepare links file for a separate docs package
      adds  728c40f   Remove traces of documentation package
      adds  e045eaf   Change Source URL to point to github repository rather than project homepage
      adds  eef5809   Update changelog to indicate closing new release BTS ticket
      adds  a3aedb9   Add new build-dependencies on python{3}-jsonschema
      adds  a39c76b   Leave off jsonschema builddepends until it becomes available in unstable
      adds  754fc2a   Force dependency on the matching version of the data package
      adds  743792f   Tweak description of data package
      adds  d6ea8b3   Configure autopkgtests
      adds  a90687b   Allow tests to run without python-jsonschema
      adds  6b03e0c   Add lintian overrides for python-cobra-data
      adds  8ef2c1a   Update changelog
      adds  25e1f3b   Use standard short name for GPL version (without decimal point).
      adds  1f1cb07   python-cobra (0.4.0b2-1) unstable; urgency=medium
       new  cdfe131   Merge branch 'master' into debian/jessie
       new  992446c   Prepare backport release

The 2 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 .travis.yml                                     |    15 +-
 INSTALL.md                                      |    10 +-
 appveyor.yml                                    |    14 +-
 cobra/VERSION                                   |     2 +-
 cobra/core/Gene.py                              |    39 +-
 cobra/core/Metabolite.py                        |     2 +-
 cobra/core/Model.py                             |    26 +-
 cobra/core/Object.py                            |    41 +-
 cobra/core/Reaction.py                          |    32 +-
 cobra/core/Species.py                           |    15 +-
 cobra/io/json.py                                |   203 +-
 cobra/io/mat.py                                 |    25 +-
 cobra/io/sbml.py                                |     4 +-
 cobra/io/sbml3.py                               |   390 +-
 cobra/manipulation/modify.py                    |    75 +-
 cobra/test/__init__.py                          |     2 +-
 cobra/test/data/mini.json                       |  1345 +-
 cobra/test/data/mini.mat                        |   Bin 14752 -> 14352 bytes
 cobra/test/data/mini.pickle                     |   Bin 10952 -> 25348 bytes
 cobra/test/data/mini_cobra.xml                  |   342 +-
 cobra/test/data/mini_fbc1.xml                   |   387 +-
 cobra/test/data/mini_fbc2.xml                   |  1416 +-
 cobra/test/data/mini_fbc2.xml.bz2               |   Bin 0 -> 4939 bytes
 cobra/test/data/mini_fbc2.xml.gz                |   Bin 0 -> 5637 bytes
 cobra/test/data/salmonella_fbc.xml              | 77257 ----------------------
 cobra/test/data/textbook.xml                    |  1562 -
 cobra/test/data/textbook.xml.gz                 |   Bin 0 -> 16329 bytes
 cobra/test/data/textbook_fva.json               |     1 +
 cobra/test/data/update_pickles.py               |   115 +-
 cobra/test/flux_analysis.py                     |    52 +-
 cobra/test/io_tests.py                          |    80 +-
 cobra/test/unit_tests.py                        |     3 +
 debian/changelog                                |    17 +
 debian/control                                  |    27 +-
 debian/copyright                                |     8 +-
 debian/patches/series                           |     2 +
 debian/patches/test-suite-return-code.patch     |    24 +
 debian/patches/testsuite-check-jsonschema.patch |    29 +
 debian/python-cobra-data.install                |     1 -
 debian/python-cobra-data.links                  |     2 -
 debian/python-cobra-data.lintian-overrides      |     4 +
 debian/tests/control                            |     7 +
 documentation_builder/io.ipynb                  |    37 +-
 setup.py                                        |     3 +-
 44 files changed, 3866 insertions(+), 79750 deletions(-)
 create mode 100644 cobra/test/data/mini_fbc2.xml.bz2
 create mode 100644 cobra/test/data/mini_fbc2.xml.gz
 delete mode 100644 cobra/test/data/salmonella_fbc.xml
 delete mode 100644 cobra/test/data/textbook.xml
 create mode 100644 cobra/test/data/textbook.xml.gz
 create mode 100644 cobra/test/data/textbook_fva.json
 create mode 100644 debian/patches/test-suite-return-code.patch
 create mode 100644 debian/patches/testsuite-check-jsonschema.patch
 delete mode 100644 debian/python-cobra-data.links
 create mode 100644 debian/python-cobra-data.lintian-overrides
 create mode 100644 debian/tests/control

-- 
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