[med-svn] [repeatmasker-recon] 02/05: first packaging

Sat Aug 22 07:13:28 UTC 2015

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osallou pushed a commit to branch master
in repository repeatmasker-recon.

commit bb5ed4819aec460c0059eb6cff74192aab6253db
Author: Olivier Sallou <osallou at debian.org>
Date:   Fri Aug 21 20:56:07 2015 +0000

    first packaging
---
 debian/changelog     |  7 +++++++
 debian/compat        |  1 +
 debian/control       | 22 ++++++++++++++++++++++
 debian/copyright     | 43 +++++++++++++++++++++++++++++++++++++++++++
 debian/files         |  1 +
 debian/rules         | 37 +++++++++++++++++++++++++++++++++++++
 debian/source/format |  1 +
 debian/watch         |  3 +++
 8 files changed, 115 insertions(+)

diff --git a/debian/changelog b/debian/changelog
new file mode 100644
index 0000000..1091fa9
--- /dev/null
+++ b/debian/changelog
@@ -0,0 +1,7 @@
+repeatmasker-recon (1.08-1) unstable; urgency=low
+
+  * Initial release (Closes: #XX)
+    [ TODO ]
+    d/watch
+
+ -- Olivier Sallou <osallou at debian.org>  Mon, 21 Aug 2015 10:57:33 +0000
diff --git a/debian/compat b/debian/compat
new file mode 100644
index 0000000..ec63514
--- /dev/null
+++ b/debian/compat
@@ -0,0 +1 @@
+9
diff --git a/debian/control b/debian/control
new file mode 100644
index 0000000..601350f
--- /dev/null
+++ b/debian/control
@@ -0,0 +1,22 @@
+Source: repeatmasker-recon
+Section: science
+Priority: optional
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Olivier Sallou <osallou at debian.org>
+Build-Depends: debhelper (>= 9), help2man
+Standards-Version: 3.9.6
+Homepage: http://www.repeatmasker.org/
+Vcs-Browser: http://anonscm.debian.org/gitweb/?p=debian-med/repeatmasker-recon.git
+Vcs-Git: git://anonscm.debian.org/debian-med/repeatmasker-recon.git
+
+
+Package: repeatmasker-recon
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends}, perl
+Description: finds repeat families from biological sequences
+ The RECON package implements a de novo algorithm for the
+ indentification of repeat families from biological sequences.  For
+ details about the algorithm, see:
+ .
+ Bao Z. and Eddy S.R. (2002) Automated de novo Identification of Repeat
+ Sequence Families in Sequenced Genomes. Submitted.
diff --git a/debian/copyright b/debian/copyright
new file mode 100644
index 0000000..e4848f5
--- /dev/null
+++ b/debian/copyright
@@ -0,0 +1,43 @@
+Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: RECONF
+Source: http://sourceforge.net/projects/bio-rainbow/
+
+Files: *
+Copyright: 2001 Washington University School of Medicine
+           2011-2014 Institute for Systems Biology
+License: GPL-2
+ This package is free software; you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation; either version 2 of the License, or
+ (at your option) any later version.
+ .
+ This package is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ GNU General Public License for more details.
+ .
+ You should have received a copy of the GNU General Public License
+ along with this program. If not, see <https://www.gnu.org/licenses/>
+ .
+ On Debian systems, the complete text of the GNU General
+ Public License version 2 can be found in "/usr/share/common-licenses/GPL-2".
+
+
+Files: debian/*
+Copyright: 2015 Olivier Sallou <osallou at debian.org>
+License: GPL-2+
+ This package is free software; you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation; either version 2 of the License, or
+ (at your option) any later version.
+ .
+ This package is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ GNU General Public License for more details.
+ .
+ You should have received a copy of the GNU General Public License
+ along with this program. If not, see <https://www.gnu.org/licenses/>
+ .
+ On Debian systems, the complete text of the GNU General
+ Public License version 2 can be found in "/usr/share/common-licenses/GPL-2".
diff --git a/debian/files b/debian/files
new file mode 100644
index 0000000..884bc54
--- /dev/null
+++ b/debian/files
@@ -0,0 +1 @@
+bio-rainbow_2.0.4-1_amd64.deb science optional
diff --git a/debian/rules b/debian/rules
new file mode 100755
index 0000000..7c8da2d
--- /dev/null
+++ b/debian/rules
@@ -0,0 +1,37 @@
+#!/usr/bin/make -f
+# See debhelper(7) (uncomment to enable)
+# output every command that modifies files on the build system.
+#export DH_VERBOSE = 1
+
+# see EXAMPLES in dpkg-buildflags(1) and read /usr/share/dpkg/*
+DPKG_EXPORT_BUILDFLAGS = 1
+include /usr/share/dpkg/default.mk
+
+# see FEATURE AREAS in dpkg-buildflags(1)
+#export DEB_BUILD_MAINT_OPTIONS = hardening=+all
+
+# see ENVIRONMENT in dpkg-buildflags(1)
+# package maintainers to append CFLAGS
+#export DEB_CFLAGS_MAINT_APPEND  = -Wall -pedantic
+# package maintainers to append LDFLAGS
+#export DEB_LDFLAGS_MAINT_APPEND = -Wl,--as-needed
+
+
+# main packaging script based on dh7 syntax
+%:
+	dh $@ 
+
+override_dh_auto_build:
+	cd src; make
+
+override_dh_auto_install:
+	cd src; make install
+	dh_install
+
+override_dh_clean:
+	cd src; make clean
+	dh_clean
+
+override_dh_installman:
+	#help2man --no-discard-stderr  ./bio-rainbow > bio-rainbow.1
+	dh_installman
diff --git a/debian/source/format b/debian/source/format
new file mode 100644
index 0000000..163aaf8
--- /dev/null
+++ b/debian/source/format
@@ -0,0 +1 @@
+3.0 (quilt)
diff --git a/debian/watch b/debian/watch
new file mode 100644
index 0000000..a64302f
--- /dev/null
+++ b/debian/watch
@@ -0,0 +1,3 @@
+version=3
+
+#http://sf.net/bio-rainbow/rainbow_(\d\S*)\.(?:zip|tgz|tbz|txz|(?:tar\.(?:gz|bz2|xz)))

-- 
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