[med-svn] [mhap] 02/02: initial packaging

[Afif Elghraoui]

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commit 35197e397ee90d0e98ce1e8303e286ec7ae30908
Author: Afif Elghraoui <afif at ghraoui.name>
Date:   Sun Aug 23 12:51:17 2015 -0700

    initial packaging
    
    jaligner is a build-dependency, but has not yet been accepted into Debian
    yet. This package requires Java 8, which has been explicitly specified since
    it is not the default-jre.
---
 debian/changelog     |  5 +++++
 debian/compat        |  1 +
 debian/control       | 25 +++++++++++++++++++++++++
 debian/docs          |  3 +++
 debian/rules         | 11 +++++++++++
 debian/source/format |  1 +
 debian/watch         |  4 ++++
 7 files changed, 50 insertions(+)

diff --git a/debian/changelog b/debian/changelog
new file mode 100644
index 0000000..a758b88
--- /dev/null
+++ b/debian/changelog
@@ -0,0 +1,5 @@
+mhap (1.6+dfsg-1) unstable; urgency=low
+
+  * Initial release (Closes: #796640)
+
+ -- Afif Elghraoui <afif at ghraoui.name>  Sat, 22 Aug 2015 12:20:48 -0700
diff --git a/debian/compat b/debian/compat
new file mode 100644
index 0000000..ec63514
--- /dev/null
+++ b/debian/compat
@@ -0,0 +1 @@
+9
diff --git a/debian/control b/debian/control
new file mode 100644
index 0000000..490f8df
--- /dev/null
+++ b/debian/control
@@ -0,0 +1,25 @@
+Source: mhap
+Section: science
+Priority: optional
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Afif Elghraoui <afif at ghraoui.name>
+Build-Depends: debhelper (>= 9),
+	       javahelper,
+	       openjdk-8-jdk,
+	       ant,
+	       libcommons-compress-java,
+	       libfastutil-java,
+	       libguava-java,
+	       jaligner
+Standards-Version: 3.9.6
+Homepage: https://github.com/marbl/MHAP
+Vcs-Git: git://anonscm.debian.org/debian-med/mhap.git
+Vcs-Browser: http://anonscm.debian.org/cgit/debian-med/mhap.git
+
+Package: mhap
+Architecture: all
+Depends: ${misc:Depends},
+	 ${java:Depends}
+Description: locality-sensitive hashing to detect long-read overlaps
+ MinHash alignment process (MHAP pronounced MAP): locality sensitive hashing
+ to detect overlaps and utilities.
diff --git a/debian/docs b/debian/docs
new file mode 100644
index 0000000..b024b7c
--- /dev/null
+++ b/debian/docs
@@ -0,0 +1,3 @@
+LICENSE.txt
+NOTICE.txt
+README.md
diff --git a/debian/rules b/debian/rules
new file mode 100755
index 0000000..f0fa954
--- /dev/null
+++ b/debian/rules
@@ -0,0 +1,11 @@
+#!/usr/bin/make -f
+
+#DH_VERBOSE = 1
+
+DPKG_EXPORT_BUILDFLAGS = 1
+include /usr/share/dpkg/default.mk
+
+export JAVA_HOME=/usr/lib/jvm/java-8-openjdk-$(DEB_HOST_ARCH)
+
+%:
+	LC_ALL=C.UTF-8 dh $@ --with javahelper
diff --git a/debian/source/format b/debian/source/format
new file mode 100644
index 0000000..163aaf8
--- /dev/null
+++ b/debian/source/format
@@ -0,0 +1 @@
+3.0 (quilt)
diff --git a/debian/watch b/debian/watch
new file mode 100644
index 0000000..eaa83cf
--- /dev/null
+++ b/debian/watch
@@ -0,0 +1,4 @@
+version=3
+
+opts="repacksuffix=+dfsg,dversionmangle=s/\+dfsg$//,filenamemangle=s/(?:.*?\/)?v?(\d[\d.]*)\.tar\.gz/mhap-$1.tar.gz/" \
+  https://github.com/marbl/MHAP/tags (?:.*?/)?v?(\d[\d.]*)\.tar\.gz

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