[med-svn] [trinityrnaseq] 01/01: correct the tests location; use debian-med bin & new name for express

[Michael Crusoe]

This is an automated email from the git hooks/post-receive script.

misterc-guest pushed a commit to branch master
in repository trinityrnaseq.

commit fc65416bca00aa8240065f347eb60b7106133cfb
Author: Michael R. Crusoe <mcrusoe at msu.edu>
Date:   Tue Aug 25 17:01:05 2015 -0400

    correct the tests location; use debian-med bin & new name for express
---
 debian/control                   | 2 +-
 debian/{test => tests}/control   | 0
 debian/{test => tests}/run-tests | 3 +++
 debian/trinityrnaseq.docs        | 2 +-
 4 files changed, 5 insertions(+), 2 deletions(-)

diff --git a/debian/control b/debian/control
index f215cc6..1af3396 100644
--- a/debian/control
+++ b/debian/control
@@ -34,7 +34,7 @@ Depends: ${shlibs:Depends},
          r-base-core,
          r-bioc-edger,
          rsem,
-         express,
+         berkeley-express,
          trimmomatic,
          transdecoder,
          parafly,
diff --git a/debian/test/control b/debian/tests/control
similarity index 100%
rename from debian/test/control
rename to debian/tests/control
diff --git a/debian/test/run-tests b/debian/tests/run-tests
similarity index 78%
rename from debian/test/run-tests
rename to debian/tests/run-tests
index 0d5917c..415f2d5 100644
--- a/debian/test/run-tests
+++ b/debian/tests/run-tests
@@ -6,6 +6,9 @@ if [ "$ADTTMP" = "" ] ; then
 fi
 cd $ADTTMP
 
+PATH=/usr/lib/debian-med/bin/:${PATH}
+export PATH
+
 cp -rs /usr/lib/trinityrnaseq/ .
 cd trinityrnaseq/sample_data
 make
diff --git a/debian/trinityrnaseq.docs b/debian/trinityrnaseq.docs
index 7791866..4b272eb 100644
--- a/debian/trinityrnaseq.docs
+++ b/debian/trinityrnaseq.docs
@@ -1,3 +1,3 @@
 README
 Release.Notes
-debian/test/run-tests
+debian/tests/run-tests

-- 
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