[med-svn] [rsem] 02/03: Merge tag 'upstream/1.2.22+dfsg'

[Michael Crusoe]

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misterc-guest pushed a commit to branch master
in repository rsem.

commit 7458d1fe65c642bb951b71ddf64d96cf2d59eabd
Merge: e91aa59 3a9288d
Author: Michael R. Crusoe <michael.crusoe at gmail.com>
Date:   Thu Aug 27 13:37:25 2015 -0700

    Merge tag 'upstream/1.2.22+dfsg'
    
    Upstream version 1.2.22+dfsg

 EBSeq/rsem-for-ebseq-find-DE |   7 +-
 PairedEndHit.h               |   4 +-
 PairedEndQModel.h            |   1 +
 README.md                    |  20 +++---
 SamParser.h                  |  23 +++++--
 WHAT_IS_NEW                  |  18 ++++++
 rsem-calculate-expression    | 150 ++++++++++++++++++++++++++++++++++++++++++-
 rsem-prepare-reference       |  72 +++++++++++++++++++--
 8 files changed, 268 insertions(+), 27 deletions(-)

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