[med-svn] [bowtie2] 04/04: debian/bowtie2-examples.install: wrap-and-sort debian/bowtie2.docs: wrap-and-sort debian/control: add libtbb-dev to Build-Depends, wrap-and-sort debian/copyright: wrap-and-sort debian/patches/hardening.patch: wrap-and-sort

[Alex Mestiashvili]

This is an automated email from the git hooks/post-receive script.

malex-guest pushed a commit to branch master
in repository bowtie2.

commit 182b4e55ad945bba09087fc7b1a69ac32b1f2f0c
Author: Alexandre Mestiashvili <alex at biotec.tu-dresden.de>
Date:   Fri Aug 28 09:37:51 2015 +0200

    debian/bowtie2-examples.install: wrap-and-sort
    debian/bowtie2.docs: wrap-and-sort
    debian/control: add libtbb-dev to Build-Depends, wrap-and-sort
    debian/copyright: wrap-and-sort
    debian/patches/hardening.patch: wrap-and-sort
---
 debian/bowtie2-examples.install |  2 +-
 debian/bowtie2.docs             |  2 +-
 debian/control                  | 28 ++++++++++++----------------
 debian/copyright                |  2 +-
 debian/patches/hardening.patch  |  3 +--
 5 files changed, 16 insertions(+), 21 deletions(-)

diff --git a/debian/bowtie2-examples.install b/debian/bowtie2-examples.install
index 59b51ef..f9bbf91 100644
--- a/debian/bowtie2-examples.install
+++ b/debian/bowtie2-examples.install
@@ -1,4 +1,4 @@
-example/reads 		usr/share/doc/bowtie2/examples
 example/index 		usr/share/doc/bowtie2/examples
+example/reads 		usr/share/doc/bowtie2/examples
 example/reference 	usr/share/doc/bowtie2/examples
 scripts		 	usr/share/doc/bowtie2/examples
diff --git a/debian/bowtie2.docs b/debian/bowtie2.docs
index 78d15b4..b168d65 100644
--- a/debian/bowtie2.docs
+++ b/debian/bowtie2.docs
@@ -1,5 +1,5 @@
 MANUAL
 TUTORIAL
 doc/manual.html
-doc/style.css
 doc/strip_markdown.pl
+doc/style.css
diff --git a/debian/control b/debian/control
index e493275..3be1b7e 100644
--- a/debian/control
+++ b/debian/control
@@ -6,9 +6,7 @@ Uploaders: Alexandre Mestiashvili <alex at biotec.tu-dresden.de>,
 Section: science
 Testsuite: autopkgtest
 Priority: optional
-Build-Depends: debhelper (>= 9.0),
-               help2man,
-               python
+Build-Depends: debhelper (>= 9.0), help2man, libtbb-dev, python
 Standards-Version: 3.9.6
 Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/bowtie2.git
 Vcs-Git: git://anonscm.debian.org/debian-med/bowtie2.git
@@ -16,18 +14,16 @@ Homepage: http://bowtie-bio.sourceforge.net/bowtie2
 
 Package: bowtie2
 Architecture: amd64 kfreebsd-amd64
-Depends: ${shlibs:Depends},
-         ${misc:Depends},
-         python
+Depends: python, ${misc:Depends}, ${shlibs:Depends}
 Suggests: bowtie2-examples
 Description: ultrafast memory-efficient short read aligner
- is an ultrafast and memory-efficient tool for aligning sequencing reads 
- to long reference sequences. It is particularly good at aligning reads 
- of about 50 up to 100s or 1,000s of characters, and particularly good 
- at aligning to relatively long (e.g. mammalian) genomes. 
+ is an ultrafast and memory-efficient tool for aligning sequencing reads
+ to long reference sequences. It is particularly good at aligning reads
+ of about 50 up to 100s or 1,000s of characters, and particularly good
+ at aligning to relatively long (e.g. mammalian) genomes.
  .
  Bowtie 2 indexes the genome with an FM Index to keep its memory footprint
- small: for the human genome, its memory footprint is typically 
+ small: for the human genome, its memory footprint is typically
  around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes
 
 Package: bowtie2-examples
@@ -36,13 +32,13 @@ Depends: ${misc:Depends}
 Recommends: bowtie2
 Enhances: bowtie2
 Description: Examples for bowtie2
- An ultrafast and memory-efficient tool for aligning sequencing reads 
- to long reference sequences. It is particularly good at aligning reads 
- of about 50 up to 100s or 1,000s of characters, and particularly good 
- at aligning to relatively long (e.g. mammalian) genomes. 
+ An ultrafast and memory-efficient tool for aligning sequencing reads
+ to long reference sequences. It is particularly good at aligning reads
+ of about 50 up to 100s or 1,000s of characters, and particularly good
+ at aligning to relatively long (e.g. mammalian) genomes.
  .
  Bowtie 2 indexes the genome with an FM Index to keep its memory footprint
- small: for the human genome, its memory footprint is typically 
+ small: for the human genome, its memory footprint is typically
  around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes
  .
  This package provides some example data to work with bowtie2.
diff --git a/debian/copyright b/debian/copyright
index 0f27f1b..159ccee 100644
--- a/debian/copyright
+++ b/debian/copyright
@@ -64,4 +64,4 @@ License: Zlib
  appreciated but is not required.
  2. Altered source versions must be plainly marked as such, and must not be
  misrepresented as being the original software.
- 3. This notice may not be removed or altered from any source distribution. 
+ 3. This notice may not be removed or altered from any source distribution.
diff --git a/debian/patches/hardening.patch b/debian/patches/hardening.patch
index 68c78cc..fdee516 100644
--- a/debian/patches/hardening.patch
+++ b/debian/patches/hardening.patch
@@ -1,5 +1,4 @@
-Description: Hardening
-Subject: Patch injects hardening CPPFLAGS
+Description: Patch injects hardening CPPFLAGS
 Author: Alexandre Mestiashvili <alex at biotec.tu-dresden.de>
 Origin: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
 Last-Update: Mon, 30 Jul 2012 13:51:31 +0200

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/bowtie2.git