[med-svn] [python-cobra] branch master updated (1f1cb07 -> b007f57)

[Afif Elghraoui]

This is an automated email from the git hooks/post-receive script.

afif-guest pushed a change to branch master
in repository python-cobra.

      from  1f1cb07   python-cobra (0.4.0b2-1) unstable; urgency=medium
       new  4677731   Imported Upstream version 0.4.0b3
       new  0146c8f   Merge tag 'upstream/0.4.0b3'
       new  ab62cd4   Remove patch that was applied upstream
       new  0f4a3a3   Adjust autopkgtest commands
       new  965573a   Refresh patch
       new  b007f57   Add changelog entry

The 6 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 .travis.yml                                     | 25 ++++++--
 INSTALL.md                                      | 33 ++++++-----
 README.md                                       |  5 ++
 cobra/VERSION                                   |  2 +-
 cobra/flux_analysis/deletion_worker.py          |  2 +-
 cobra/flux_analysis/phenotype_phase_plane.py    | 26 ++++-----
 cobra/io/__init__.py                            | 27 ++++-----
 cobra/io/mat.py                                 |  3 +-
 cobra/solvers/cglpk.pyx                         | 76 +++++++++++++------------
 cobra/test/__init__.py                          |  5 +-
 cobra/test/flux_analysis.py                     |  9 +++
 debian/changelog                                |  9 +++
 debian/patches/series                           |  1 -
 debian/patches/test-suite-return-code.patch     | 24 --------
 debian/patches/testsuite-check-jsonschema.patch |  2 +-
 debian/tests/control                            |  4 +-
 setup.py                                        | 12 +++-
 17 files changed, 141 insertions(+), 124 deletions(-)
 delete mode 100644 debian/patches/test-suite-return-code.patch

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