[med-svn] [python-cobra] 02/06: Merge tag 'upstream/0.4.0b3'

[Afif Elghraoui]

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afif-guest pushed a commit to branch master
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commit 0146c8f88698b7c77161ab67be12c162e8a8a50b
Merge: 1f1cb07 4677731
Author: Afif Elghraoui <afif at ghraoui.name>
Date:   Fri Aug 28 21:47:55 2015 -0700

    Merge tag 'upstream/0.4.0b3'
    
    Upstream version 0.4.0b3

 .travis.yml                                  | 25 ++++++---
 INSTALL.md                                   | 33 ++++++------
 README.md                                    |  5 ++
 cobra/VERSION                                |  2 +-
 cobra/flux_analysis/deletion_worker.py       |  2 +-
 cobra/flux_analysis/phenotype_phase_plane.py | 26 ++++------
 cobra/io/__init__.py                         | 27 ++++------
 cobra/io/mat.py                              |  3 +-
 cobra/solvers/cglpk.pyx                      | 76 +++++++++++++++-------------
 cobra/test/__init__.py                       |  5 +-
 cobra/test/flux_analysis.py                  |  9 ++++
 setup.py                                     | 12 +++--
 12 files changed, 129 insertions(+), 96 deletions(-)

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