[med-svn] r20017 - trunk/packages/cassiopee/trunk/debian

[Andreas Tille]

Author: tille
Date: 2015-08-31 07:25:40 +0000 (Mon, 31 Aug 2015)
New Revision: 20017

Added:
   trunk/packages/cassiopee/trunk/debian/libcassie-doc.doc-base
Modified:
   trunk/packages/cassiopee/trunk/debian/cassiopee.1
   trunk/packages/cassiopee/trunk/debian/cassiopeeknife.1
   trunk/packages/cassiopee/trunk/debian/changelog
   trunk/packages/cassiopee/trunk/debian/control
   trunk/packages/cassiopee/trunk/debian/copyright
Log:
Work on several lintian issues but failed with the "wrong-whatis-entry" in manpage


Modified: trunk/packages/cassiopee/trunk/debian/cassiopee.1
===================================================================
--- trunk/packages/cassiopee/trunk/debian/cassiopee.1	2015-08-31 06:41:59 UTC (rev 20016)
+++ trunk/packages/cassiopee/trunk/debian/cassiopee.1	2015-08-31 07:25:40 UTC (rev 20017)
@@ -1,7 +1,10 @@
 .\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.45.1.
 .TH CASSIOPEE "1" "April 2014" "Cassiopee Version 1.0" "User Commands"
 .SH NAME
-Cassiopee \- manual page for Cassiopee Version 1.0
+cassiopee \- manual page for Cassiopee Version 1.0
+.SH SYNOPSIS
+.B cassiopee
+\fI[Options]\fR \fB<sequence>\fR
 .SH DESCRIPTION
 .SS "Usage:"
 .HP
@@ -42,15 +45,3 @@
 \fB\-v\fR: show version
 .HP
 \fB\-h\fR: show this message
-.SH "SEE ALSO"
-The full documentation for
-.B Cassiopee
-is maintained as a Texinfo manual.  If the
-.B info
-and
-.B Cassiopee
-programs are properly installed at your site, the command
-.IP
-.B info Cassiopee
-.PP
-should give you access to the complete manual.

Modified: trunk/packages/cassiopee/trunk/debian/cassiopeeknife.1
===================================================================
--- trunk/packages/cassiopee/trunk/debian/cassiopeeknife.1	2015-08-31 06:41:59 UTC (rev 20016)
+++ trunk/packages/cassiopee/trunk/debian/cassiopeeknife.1	2015-08-31 07:25:40 UTC (rev 20017)
@@ -1,7 +1,7 @@
 .\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.45.1.
 .TH CASSIOPEE "1" "April 2014" "Cassiopee Version 1.0" "User Commands"
 .SH NAME
-Cassiopee \- cassiopeeknife
+cassiopeeknife \- this tool is part of the cassiopee library
 .SH DESCRIPTION
 .SS "Usage:"
 .HP
@@ -12,15 +12,3 @@
 \fB\-v\fR: show version
 .HP
 \fB\-h\fR: show this message
-.SH "SEE ALSO"
-The full documentation for
-.B Cassiopee
-is maintained as a Texinfo manual.  If the
-.B info
-and
-.B Cassiopee
-programs are properly installed at your site, the command
-.IP
-.B info Cassiopee
-.PP
-should give you access to the complete manual.

Modified: trunk/packages/cassiopee/trunk/debian/changelog
===================================================================
--- trunk/packages/cassiopee/trunk/debian/changelog	2015-08-31 06:41:59 UTC (rev 20016)
+++ trunk/packages/cassiopee/trunk/debian/changelog	2015-08-31 07:25:40 UTC (rev 20017)
@@ -5,6 +5,9 @@
     Closes: #796732
   * Enhance long description of doc package
   * cme fix dpkg-control
+  * DEP5
+  * Add doc-base control file
+  * Enhance manpages
 
  -- Andreas Tille <tille at debian.org>  Mon, 31 Aug 2015 08:28:40 +0200
 

Modified: trunk/packages/cassiopee/trunk/debian/control
===================================================================
--- trunk/packages/cassiopee/trunk/debian/control	2015-08-31 06:41:59 UTC (rev 20016)
+++ trunk/packages/cassiopee/trunk/debian/control	2015-08-31 07:25:40 UTC (rev 20017)
@@ -25,6 +25,8 @@
  genomic sequence (dna/rna/protein) and search for a subsequence with
  exact match or allowing substitutions (Hamming distance) and/or
  insertion/deletions.
+ .
+ This package contains the cassiopee and cassiopeeknife tools.
 
 Package: libcassie-doc
 Architecture: all
@@ -65,3 +67,5 @@
  genomic sequence (dna/rna/protein) and search for a subsequence with
  exact match or allowing substitutions (Hamming distance) and/or
  insertion/deletions.
+ .
+ This package contains the header files for development.

Modified: trunk/packages/cassiopee/trunk/debian/copyright
===================================================================
--- trunk/packages/cassiopee/trunk/debian/copyright	2015-08-31 06:41:59 UTC (rev 20016)
+++ trunk/packages/cassiopee/trunk/debian/copyright	2015-08-31 07:25:40 UTC (rev 20017)
@@ -4,6 +4,10 @@
 Files-Excluded:
     deps
 
+Files: *
+Copyright: 2013 IRISA, Olivier Sallou <osallou at irisa.fr>
+License: GPL-3+
+
 Files: src/tree/tree.hh
 Copyright: 2001-2011 Kasper Peeters <kasper at phi-sci.com>
 License: GPL-3
@@ -13,15 +17,7 @@
 Files: src/tree/tree_util.hh
 Copyright: 2001-2009 Kasper Peeters <kasper at phi-sci.com>
 License: GPL-3+
- On Debian systems, the complete text of the GNU General
- Public License version 3 can be found in "/usr/share/common-licenses/GPL-3".
 
-Files: *
-Copyright: 2013 IRISA, Olivier Sallou <osallou at irisa.fr>
-License: GPL-3+
- On Debian systems, the complete text of the GNU General
- Public License version 3 can be found in "/usr/share/common-licenses/GPL-3".
-
 Files: debian/*
 Copyright: 2014 Olivier Sallou <osallou at debian.org>
 License: GPL-2+
@@ -40,3 +36,7 @@
  .
  On Debian systems, the complete text of the GNU General
  Public License version 2 can be found in "/usr/share/common-licenses/GPL-2".
+
+License: GPL-3+
+ On Debian systems, the complete text of the GNU General Public
+ License version 3 can be found in "/usr/share/common-licenses/GPL-3".

Added: trunk/packages/cassiopee/trunk/debian/libcassie-doc.doc-base
===================================================================
--- trunk/packages/cassiopee/trunk/debian/libcassie-doc.doc-base	                        (rev 0)
+++ trunk/packages/cassiopee/trunk/debian/libcassie-doc.doc-base	2015-08-31 07:25:40 UTC (rev 20017)
@@ -0,0 +1,13 @@
+Document: libcassie-doc
+Title: Cassiopee Documentation
+Author: Olivier Sallou <osallou at irisa.fr>
+Abstract:  Cassiopee index and search library C implementation.
+ It is a complete rewrite of the ruby Cassiopee gem. It scans an input
+ genomic sequence (dna/rna/protein) and search for a subsequence with
+ exact match or allowing substitutions (Hamming distance) and/or
+ insertion/deletions.
+Section: Science/Biology
+
+Format: html
+Index: /usr/share/doc/cassiopee/html/index.html
+Files: /usr/share/doc/cassiopee/html/*