[med-svn] [figtree] branch upstream updated (92a37ba -> 8f2470a)
Andreas Tille
tille at debian.org
Tue Dec 1 10:56:01 UTC 2015
This is an automated email from the git hooks/post-receive script.
tille pushed a change to branch upstream
in repository figtree.
from 92a37ba Imported Upstream version 1.4.2
new 8f2470a Imported Upstream version 1.4.2+dfsg
The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
Graphics/CartoonTool.psd | Bin
Graphics/CollapseTool.png | Bin
Graphics/CollapseTool.psd | Bin
Graphics/Darwin's Tree.png | Bin
Graphics/FigTree.icns | Bin
Graphics/FigTreeDocIcon.icns | Bin
Graphics/FigTreeDocIcon.psd | Bin
Graphics/FigTreeDocIcon.tif | Bin
Graphics/FigTreeIcon.png | Bin
Graphics/FigTreeIcon.psd | Bin
Graphics/FigTreeIcon.tif | Bin
Graphics/FigTreeScreen.png | Bin
Graphics/RootingTool.psd | Bin
Graphics/polar_tree.pdf | 0
Graphics/radial_tree.pdf | Bin
Graphics/rect_tree.pdf | 0
build.xml | 32 ++++++++++-----------
release/Linux/icons/figtree.png | Bin
src/figtree/applet/FigTreeApplet.java | 10 +++----
src/figtree/application/ExportTreeDialog.java | 0
src/figtree/application/FigTreeApplication.java | 16 +++++------
src/figtree/application/FigTreeFrame.java | 0
src/figtree/application/FigTreeMenuBarFactory.java | 0
src/figtree/application/FigTreeNexusExporter.java | 0
src/figtree/application/FigTreeNexusImporter.java | 0
src/figtree/application/FigTreePDF.java | 0
src/figtree/application/FigTreePanel.java | 0
src/figtree/application/JSONTreeExporter.java | 0
src/figtree/application/images/actionButton.png | Bin
.../application/images/actionButtonInactive.png | Bin
.../application/images/actionButtonPressed.png | Bin
src/figtree/application/images/add.png | Bin
src/figtree/application/images/addButton.png | Bin
.../application/images/addButtonInactive.png | Bin
.../application/images/addButtonPressed.png | Bin
src/figtree/application/images/annotation.png | Bin
src/figtree/application/images/annotationTool.png | Bin
src/figtree/application/images/cartoonNodeTool.png | Bin
src/figtree/application/images/chartTool.png | Bin
.../application/images/collapseNodeTool.png | Bin
src/figtree/application/images/coloursTool.png | Bin
src/figtree/application/images/crosshairCursor.png | Bin
src/figtree/application/images/dataEditorTool.png | Bin
src/figtree/application/images/document.png | Bin
src/figtree/application/images/exportTool.png | Bin
src/figtree/application/images/figtree.png | Bin
.../application/images/filterBackground.png | Bin
src/figtree/application/images/find.png | Bin
src/figtree/application/images/findTool.png | Bin
src/figtree/application/images/fontBiggerTool.png | Bin
src/figtree/application/images/fontSmallerTool.png | Bin
src/figtree/application/images/import.png | Bin
src/figtree/application/images/infoTool.png | Bin
src/figtree/application/images/minus.png | Bin
src/figtree/application/images/nextButton.png | Bin
.../application/images/nextButtonInactive.png | Bin
.../application/images/nextButtonPressed.png | Bin
src/figtree/application/images/prefsAdvanced.png | Bin
src/figtree/application/images/prefsClipboard.png | Bin
src/figtree/application/images/prefsGeneral.png | Bin
src/figtree/application/images/previousButton.png | Bin
.../application/images/previousButtonInactive.png | Bin
.../application/images/previousButtonPressed.png | Bin
src/figtree/application/images/project.png | Bin
src/figtree/application/images/projectTool.png | Bin
src/figtree/application/images/publication.png | Bin
src/figtree/application/images/removeButton.png | Bin
.../application/images/removeButtonInactive.png | Bin
.../application/images/removeButtonPressed.png | Bin
src/figtree/application/images/rerootTool.png | Bin
src/figtree/application/images/rotateCursor.psd | Bin
src/figtree/application/images/rotateTool.png | Bin
src/figtree/application/images/statisticsTool.png | Bin
src/figtree/application/images/tableSelection.png | Bin
.../application/images/tableSelectionGray.png | Bin
src/figtree/application/menus/TreeMenuFactory.java | 0
src/figtree/application/menus/TreeMenuHandler.java | 0
.../preferences/AdvancedPreferencesSection.java | 0
.../preferences/AppearancePreferencesSection.java | 0
.../preferences/FontsPreferencesSection.java | 0
.../preferences/GeneralPreferencesSection.java | 0
src/figtree/panel/FigTreePanel.java | 0
src/figtree/panel/LabelPainterController.java | 0
src/figtree/panel/ScaleBarPainterController.java | 0
src/figtree/panel/SimpleLabelPainter.java | 0
src/figtree/panel/TreeAppearanceController.java | 0
src/figtree/panel/TreeColouringController.java | 0
src/figtree/panel/TreeLayoutController.java | 0
src/figtree/panel/TreeViewerController.java | 0
src/figtree/panel/TreesController.java | 0
src/figtree/treeviewer/AnnotationsController.java | 10 +++----
src/figtree/treeviewer/AnnotationsListener.java | 0
.../treeviewer/AttributeColourController.java | 0
.../treeviewer/ContinuousColourScaleDialog.java | 0
src/figtree/treeviewer/ContinuousScaleDialog.java | 0
src/figtree/treeviewer/DefaultTreeViewer.java | 10 -------
.../treeviewer/DiscreteColourScaleDialog.java | 0
src/figtree/treeviewer/ExtendedTreeViewer.java | 0
src/figtree/treeviewer/FindDialog.java | 0
src/figtree/treeviewer/FindPanel.java | 0
src/figtree/treeviewer/MultiPaneTreeViewer.java | 0
.../treeviewer/MultiPaneTreeViewerController.java | 0
.../treeviewer/MultipleTreesController.java | 0
.../treeviewer/OldContinuousColourScaleDialog.java | 0
src/figtree/treeviewer/ScaleAxis.java | 0
src/figtree/treeviewer/SizeScaleDialog.java | 0
src/figtree/treeviewer/TimeScale.java | 0
src/figtree/treeviewer/TimeScaleController.java | 0
.../treeviewer/TreeAppearanceController.java | 0
src/figtree/treeviewer/TreePane.java | 10 +------
src/figtree/treeviewer/TreePaneListener.java | 0
src/figtree/treeviewer/TreePaneRollOver.java | 0
src/figtree/treeviewer/TreePaneRuler.java | 0
src/figtree/treeviewer/TreePaneSelector.java | 0
src/figtree/treeviewer/TreeSelectionListener.java | 0
src/figtree/treeviewer/TreeViewer.java | 0
src/figtree/treeviewer/TreeViewerController.java | 0
src/figtree/treeviewer/TreeViewerListener.java | 0
src/figtree/treeviewer/TreeViewerPanel.java | 0
src/figtree/treeviewer/TreesController.java | 0
.../annotations/AnnotationDefinition.java | 0
.../annotations/AnnotationDefinitionsDialog.java | 0
.../treeviewer/annotations/AnnotationDialog.java | 0
.../annotations/DefineAnnotationDialog.java | 0
.../decorators/AttributableDecorator.java | 0
.../treeviewer/decorators/ColourDecorator.java | 0
.../treeviewer/decorators/CompoundDecorator.java | 0
.../decorators/ContinuousColourDecorator.java | 0
.../treeviewer/decorators/ContinuousScale.java | 0
.../decorators/ContinuousStrokeDecorator.java | 0
src/figtree/treeviewer/decorators/Decorator.java | 0
.../decorators/DiscreteColourDecorator.java | 0
.../DiversityContinuousColourDecorator.java | 0
.../decorators/HSBContinuousColourDecorator.java | 0
.../decorators/InterpolatingColourDecorator.java | 0
.../decorators/ParsimonyBranchDecorator.java | 0
src/figtree/treeviewer/images/polarTree.png | Bin
src/figtree/treeviewer/images/radialTree.png | Bin
src/figtree/treeviewer/images/rectangularTree.png | Bin
.../treeviewer/painters/AbstractPainter.java | 0
.../treeviewer/painters/BasicLabelPainter.java | 0
.../treeviewer/painters/CharactersPainter.java | 0
src/figtree/treeviewer/painters/LabelPainter.java | 0
.../painters/LabelPainterController.java | 0
src/figtree/treeviewer/painters/LegendPainter.java | 0
.../painters/LegendPainterController.java | 0
.../treeviewer/painters/NodeBarController.java | 0
.../treeviewer/painters/NodeBarPainter.java | 0
src/figtree/treeviewer/painters/NodePainter.java | 0
.../treeviewer/painters/NodeShapeController.java | 0
.../treeviewer/painters/NodeShapePainter.java | 0
src/figtree/treeviewer/painters/Painter.java | 0
.../treeviewer/painters/PainterListener.java | 0
.../treeviewer/painters/ScaleAxisPainter.java | 0
.../painters/ScaleAxisPainterController.java | 0
.../treeviewer/painters/ScaleBarPainter.java | 0
.../painters/ScaleBarPainterController.java | 0
.../treeviewer/painters/ScaleGridPainter.java | 0
src/figtree/treeviewer/painters/ScalePainter.java | 0
src/figtree/treeviewer/painters/StatesPainter.java | 0
.../treeviewer/treelayouts/AbstractTreeLayout.java | 0
.../treeviewer/treelayouts/PolarTreeLayout.java | 0
.../treelayouts/PolarTreeLayoutController.java | 0
.../treeviewer/treelayouts/RadialTreeLayout.java | 0
.../treelayouts/RadialTreeLayoutController.java | 0
.../treelayouts/RectilinearTreeLayout.java | 0
.../RectilinearTreeLayoutController.java | 0
src/figtree/treeviewer/treelayouts/TreeLayout.java | 0
.../treeviewer/treelayouts/TreeLayoutCache.java | 0
.../treeviewer/treelayouts/TreeLayoutListener.java | 0
src/figtree/ui/PercentFormat.java | 0
src/figtree/ui/RomanFormat.java | 0
172 files changed, 34 insertions(+), 54 deletions(-)
mode change 100644 => 100755 Graphics/CartoonTool.psd
mode change 100644 => 100755 Graphics/CollapseTool.png
mode change 100644 => 100755 Graphics/CollapseTool.psd
mode change 100644 => 100755 Graphics/Darwin's Tree.png
mode change 100644 => 100755 Graphics/FigTree.icns
mode change 100644 => 100755 Graphics/FigTreeDocIcon.icns
mode change 100644 => 100755 Graphics/FigTreeDocIcon.psd
mode change 100644 => 100755 Graphics/FigTreeDocIcon.tif
mode change 100644 => 100755 Graphics/FigTreeIcon.png
mode change 100644 => 100755 Graphics/FigTreeIcon.psd
mode change 100644 => 100755 Graphics/FigTreeIcon.tif
mode change 100644 => 100755 Graphics/FigTreeScreen.png
mode change 100644 => 100755 Graphics/RootingTool.psd
mode change 100644 => 100755 Graphics/polar_tree.pdf
mode change 100644 => 100755 Graphics/radial_tree.pdf
mode change 100644 => 100755 Graphics/rect_tree.pdf
mode change 100644 => 100755 release/Linux/icons/figtree.png
mode change 100644 => 100755 src/figtree/applet/FigTreeApplet.java
mode change 100644 => 100755 src/figtree/application/ExportTreeDialog.java
mode change 100644 => 100755 src/figtree/application/FigTreeApplication.java
mode change 100644 => 100755 src/figtree/application/FigTreeFrame.java
mode change 100644 => 100755 src/figtree/application/FigTreeMenuBarFactory.java
mode change 100644 => 100755 src/figtree/application/FigTreeNexusExporter.java
mode change 100644 => 100755 src/figtree/application/FigTreeNexusImporter.java
mode change 100644 => 100755 src/figtree/application/FigTreePDF.java
mode change 100644 => 100755 src/figtree/application/FigTreePanel.java
mode change 100644 => 100755 src/figtree/application/JSONTreeExporter.java
mode change 100644 => 100755 src/figtree/application/images/actionButton.png
mode change 100644 => 100755 src/figtree/application/images/actionButtonInactive.png
mode change 100644 => 100755 src/figtree/application/images/actionButtonPressed.png
mode change 100644 => 100755 src/figtree/application/images/add.png
mode change 100644 => 100755 src/figtree/application/images/addButton.png
mode change 100644 => 100755 src/figtree/application/images/addButtonInactive.png
mode change 100644 => 100755 src/figtree/application/images/addButtonPressed.png
mode change 100644 => 100755 src/figtree/application/images/annotation.png
mode change 100644 => 100755 src/figtree/application/images/annotationTool.png
mode change 100644 => 100755 src/figtree/application/images/cartoonNodeTool.png
mode change 100644 => 100755 src/figtree/application/images/chartTool.png
mode change 100644 => 100755 src/figtree/application/images/collapseNodeTool.png
mode change 100644 => 100755 src/figtree/application/images/coloursTool.png
mode change 100644 => 100755 src/figtree/application/images/crosshairCursor.png
mode change 100644 => 100755 src/figtree/application/images/dataEditorTool.png
mode change 100644 => 100755 src/figtree/application/images/document.png
mode change 100644 => 100755 src/figtree/application/images/exportTool.png
mode change 100644 => 100755 src/figtree/application/images/figtree.png
mode change 100644 => 100755 src/figtree/application/images/filterBackground.png
mode change 100644 => 100755 src/figtree/application/images/find.png
mode change 100644 => 100755 src/figtree/application/images/findTool.png
mode change 100644 => 100755 src/figtree/application/images/fontBiggerTool.png
mode change 100644 => 100755 src/figtree/application/images/fontSmallerTool.png
mode change 100644 => 100755 src/figtree/application/images/import.png
mode change 100644 => 100755 src/figtree/application/images/infoTool.png
mode change 100644 => 100755 src/figtree/application/images/minus.png
mode change 100644 => 100755 src/figtree/application/images/nextButton.png
mode change 100644 => 100755 src/figtree/application/images/nextButtonInactive.png
mode change 100644 => 100755 src/figtree/application/images/nextButtonPressed.png
mode change 100644 => 100755 src/figtree/application/images/prefsAdvanced.png
mode change 100644 => 100755 src/figtree/application/images/prefsClipboard.png
mode change 100644 => 100755 src/figtree/application/images/prefsGeneral.png
mode change 100644 => 100755 src/figtree/application/images/previousButton.png
mode change 100644 => 100755 src/figtree/application/images/previousButtonInactive.png
mode change 100644 => 100755 src/figtree/application/images/previousButtonPressed.png
mode change 100644 => 100755 src/figtree/application/images/project.png
mode change 100644 => 100755 src/figtree/application/images/projectTool.png
mode change 100644 => 100755 src/figtree/application/images/publication.png
mode change 100644 => 100755 src/figtree/application/images/removeButton.png
mode change 100644 => 100755 src/figtree/application/images/removeButtonInactive.png
mode change 100644 => 100755 src/figtree/application/images/removeButtonPressed.png
mode change 100644 => 100755 src/figtree/application/images/rerootTool.png
mode change 100644 => 100755 src/figtree/application/images/rotateCursor.psd
mode change 100644 => 100755 src/figtree/application/images/rotateTool.png
mode change 100644 => 100755 src/figtree/application/images/statisticsTool.png
mode change 100644 => 100755 src/figtree/application/images/tableSelection.png
mode change 100644 => 100755 src/figtree/application/images/tableSelectionGray.png
mode change 100644 => 100755 src/figtree/application/menus/TreeMenuFactory.java
mode change 100644 => 100755 src/figtree/application/menus/TreeMenuHandler.java
mode change 100644 => 100755 src/figtree/application/preferences/AdvancedPreferencesSection.java
mode change 100644 => 100755 src/figtree/application/preferences/AppearancePreferencesSection.java
mode change 100644 => 100755 src/figtree/application/preferences/FontsPreferencesSection.java
mode change 100644 => 100755 src/figtree/application/preferences/GeneralPreferencesSection.java
mode change 100644 => 100755 src/figtree/panel/FigTreePanel.java
mode change 100644 => 100755 src/figtree/panel/LabelPainterController.java
mode change 100644 => 100755 src/figtree/panel/ScaleBarPainterController.java
mode change 100644 => 100755 src/figtree/panel/SimpleLabelPainter.java
mode change 100644 => 100755 src/figtree/panel/TreeAppearanceController.java
mode change 100644 => 100755 src/figtree/panel/TreeColouringController.java
mode change 100644 => 100755 src/figtree/panel/TreeLayoutController.java
mode change 100644 => 100755 src/figtree/panel/TreeViewerController.java
mode change 100644 => 100755 src/figtree/panel/TreesController.java
mode change 100644 => 100755 src/figtree/treeviewer/AnnotationsController.java
mode change 100644 => 100755 src/figtree/treeviewer/AnnotationsListener.java
mode change 100644 => 100755 src/figtree/treeviewer/AttributeColourController.java
mode change 100644 => 100755 src/figtree/treeviewer/ContinuousColourScaleDialog.java
mode change 100644 => 100755 src/figtree/treeviewer/ContinuousScaleDialog.java
mode change 100644 => 100755 src/figtree/treeviewer/DefaultTreeViewer.java
mode change 100644 => 100755 src/figtree/treeviewer/DiscreteColourScaleDialog.java
mode change 100644 => 100755 src/figtree/treeviewer/ExtendedTreeViewer.java
mode change 100644 => 100755 src/figtree/treeviewer/FindDialog.java
mode change 100644 => 100755 src/figtree/treeviewer/FindPanel.java
mode change 100644 => 100755 src/figtree/treeviewer/MultiPaneTreeViewer.java
mode change 100644 => 100755 src/figtree/treeviewer/MultiPaneTreeViewerController.java
mode change 100644 => 100755 src/figtree/treeviewer/MultipleTreesController.java
mode change 100644 => 100755 src/figtree/treeviewer/OldContinuousColourScaleDialog.java
mode change 100644 => 100755 src/figtree/treeviewer/ScaleAxis.java
mode change 100644 => 100755 src/figtree/treeviewer/SizeScaleDialog.java
mode change 100644 => 100755 src/figtree/treeviewer/TimeScale.java
mode change 100644 => 100755 src/figtree/treeviewer/TimeScaleController.java
mode change 100644 => 100755 src/figtree/treeviewer/TreeAppearanceController.java
mode change 100644 => 100755 src/figtree/treeviewer/TreePane.java
mode change 100644 => 100755 src/figtree/treeviewer/TreePaneListener.java
mode change 100644 => 100755 src/figtree/treeviewer/TreePaneRollOver.java
mode change 100644 => 100755 src/figtree/treeviewer/TreePaneRuler.java
mode change 100644 => 100755 src/figtree/treeviewer/TreePaneSelector.java
mode change 100644 => 100755 src/figtree/treeviewer/TreeSelectionListener.java
mode change 100644 => 100755 src/figtree/treeviewer/TreeViewer.java
mode change 100644 => 100755 src/figtree/treeviewer/TreeViewerController.java
mode change 100644 => 100755 src/figtree/treeviewer/TreeViewerListener.java
mode change 100644 => 100755 src/figtree/treeviewer/TreeViewerPanel.java
mode change 100644 => 100755 src/figtree/treeviewer/TreesController.java
mode change 100644 => 100755 src/figtree/treeviewer/annotations/AnnotationDefinition.java
mode change 100644 => 100755 src/figtree/treeviewer/annotations/AnnotationDefinitionsDialog.java
mode change 100644 => 100755 src/figtree/treeviewer/annotations/AnnotationDialog.java
mode change 100644 => 100755 src/figtree/treeviewer/annotations/DefineAnnotationDialog.java
mode change 100644 => 100755 src/figtree/treeviewer/decorators/AttributableDecorator.java
mode change 100644 => 100755 src/figtree/treeviewer/decorators/ColourDecorator.java
mode change 100644 => 100755 src/figtree/treeviewer/decorators/CompoundDecorator.java
mode change 100644 => 100755 src/figtree/treeviewer/decorators/ContinuousColourDecorator.java
mode change 100644 => 100755 src/figtree/treeviewer/decorators/ContinuousScale.java
mode change 100644 => 100755 src/figtree/treeviewer/decorators/ContinuousStrokeDecorator.java
mode change 100644 => 100755 src/figtree/treeviewer/decorators/Decorator.java
mode change 100644 => 100755 src/figtree/treeviewer/decorators/DiscreteColourDecorator.java
mode change 100644 => 100755 src/figtree/treeviewer/decorators/DiversityContinuousColourDecorator.java
mode change 100644 => 100755 src/figtree/treeviewer/decorators/HSBContinuousColourDecorator.java
mode change 100644 => 100755 src/figtree/treeviewer/decorators/InterpolatingColourDecorator.java
mode change 100644 => 100755 src/figtree/treeviewer/decorators/ParsimonyBranchDecorator.java
mode change 100644 => 100755 src/figtree/treeviewer/images/polarTree.png
mode change 100644 => 100755 src/figtree/treeviewer/images/radialTree.png
mode change 100644 => 100755 src/figtree/treeviewer/images/rectangularTree.png
mode change 100644 => 100755 src/figtree/treeviewer/painters/AbstractPainter.java
mode change 100644 => 100755 src/figtree/treeviewer/painters/BasicLabelPainter.java
mode change 100644 => 100755 src/figtree/treeviewer/painters/CharactersPainter.java
mode change 100644 => 100755 src/figtree/treeviewer/painters/LabelPainter.java
mode change 100644 => 100755 src/figtree/treeviewer/painters/LabelPainterController.java
mode change 100644 => 100755 src/figtree/treeviewer/painters/LegendPainter.java
mode change 100644 => 100755 src/figtree/treeviewer/painters/LegendPainterController.java
mode change 100644 => 100755 src/figtree/treeviewer/painters/NodeBarController.java
mode change 100644 => 100755 src/figtree/treeviewer/painters/NodeBarPainter.java
mode change 100644 => 100755 src/figtree/treeviewer/painters/NodePainter.java
mode change 100644 => 100755 src/figtree/treeviewer/painters/NodeShapeController.java
mode change 100644 => 100755 src/figtree/treeviewer/painters/NodeShapePainter.java
mode change 100644 => 100755 src/figtree/treeviewer/painters/Painter.java
mode change 100644 => 100755 src/figtree/treeviewer/painters/PainterListener.java
mode change 100644 => 100755 src/figtree/treeviewer/painters/ScaleAxisPainter.java
mode change 100644 => 100755 src/figtree/treeviewer/painters/ScaleAxisPainterController.java
mode change 100644 => 100755 src/figtree/treeviewer/painters/ScaleBarPainter.java
mode change 100644 => 100755 src/figtree/treeviewer/painters/ScaleBarPainterController.java
mode change 100644 => 100755 src/figtree/treeviewer/painters/ScaleGridPainter.java
mode change 100644 => 100755 src/figtree/treeviewer/painters/ScalePainter.java
mode change 100644 => 100755 src/figtree/treeviewer/painters/StatesPainter.java
mode change 100644 => 100755 src/figtree/treeviewer/treelayouts/AbstractTreeLayout.java
mode change 100644 => 100755 src/figtree/treeviewer/treelayouts/PolarTreeLayout.java
mode change 100644 => 100755 src/figtree/treeviewer/treelayouts/PolarTreeLayoutController.java
mode change 100644 => 100755 src/figtree/treeviewer/treelayouts/RadialTreeLayout.java
mode change 100644 => 100755 src/figtree/treeviewer/treelayouts/RadialTreeLayoutController.java
mode change 100644 => 100755 src/figtree/treeviewer/treelayouts/RectilinearTreeLayout.java
mode change 100644 => 100755 src/figtree/treeviewer/treelayouts/RectilinearTreeLayoutController.java
mode change 100644 => 100755 src/figtree/treeviewer/treelayouts/TreeLayout.java
mode change 100644 => 100755 src/figtree/treeviewer/treelayouts/TreeLayoutCache.java
mode change 100644 => 100755 src/figtree/treeviewer/treelayouts/TreeLayoutListener.java
mode change 100644 => 100755 src/figtree/ui/PercentFormat.java
mode change 100644 => 100755 src/figtree/ui/RomanFormat.java
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