[med-svn] [bart] annotated tag v0.2.09 created (now c4537e9)

[Martin Uecker]

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uecker-guest pushed a change to annotated tag v0.2.09
in repository bart.

        at  c4537e9   (tag)
   tagging  cb2853839afef46d344b9e52daf114b3a79d536b (commit)
  replaces  v0.2.08
 tagged by  Martin Uecker
        on  Wed Oct 7 13:10:31 2015 +0200

- Log -----------------------------------------------------------------
version 0.2.09

Changes:
	- support multiple penalties in pics tool
	- fix problems with odd matrix sizes
	- fix performance regression (fftmod, gram_matrix)
	- added tools: show, rmnse, sub, fakeksp, version
      	- example script for GRASP reconstruction
	- experimental wave reconstruction
	- toimg: write sequence of 2D images
      	- make cfl file format reader forwards compatible
      	- a sampling pattern can be specified with rsense
	- autogenenerated .gitignore
	- exuberant ctags script
	- library: finite difference operator
      	- library: experimental simplex code
      	- library: generalized calibration matrix construction
	- other minor bug fixes and enhancements
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Frank Ong (1):
      added option -C to pics.c to changed maximum cg iter for admm

Jon Tamir (13):
      - autogen .gitignore from .gitignore.main
      fix case where sense maps don't have higher-order dimensions
      don't free in recon.c, instead free where sense_init is called
      Merge branch 'master' of github.com:morpheus-med/bart
      Merge branch 'master' of github.com:mikgroup/bart
      verbosify load cfl errors and merge
      Merge branch 'misc-updates'
      make sub executable
      Merge branch 'master' into logging
      comment out datetime logging since it is very slow
      only get datetime if the debug level is high enough to print
      undo accidental comment
      Merge pull request #9 from mikgroup/gpics2

Jonathan Tamir (26):
      minor change to help str
      change debug level output of admm
      fix file permissions
      Merge branch 'master' of github.com:mikgroup/bart
      exuberant ctags script
      chmod -x
      minor
      write sequence of 2D images
      write sequence of 2D images (closes #6)
      chmod -x
      write sequence of 2D images (closes #6)
      add global boolean, debug_logging, that prints verbose debug messages if set to true
      use strftime functions
      add comment about slow datetime
      use shortcut for false test and call debug_vprintf
      change fista_conf to ist_conf
      increase debug level for iterations
      use format strings for io_error
      define AR by default
      deprecate relnorm program (use nrmse instead)
      sort bart commands and verbosify unknown command error
      revert back to exit(1) for bart exit. (re: 6d060ac)
      dicom: write InstanceNumber tag and add some sanity checks.
      minor
      ignore mac debug files
      undo minor

Martin Uecker (50):
      fix gcc openmp issue
      add pattern input to rsense, allow explicit pattern to vary along channels
      change md_resize_center for odd differences
      fix typo in Matlab interface for windows
      extend operator interface
      add simplex code
      generalize calibration matrix construction
      update gpu code
      add lapack_cholesky
      add experimental overlap-and-add code
      fix memory corruption in admm
      add copyright
      allow multiple penalties
      add script for GRASP
      add rtnlinv script
      wavelet3: add missing changes
      Merge pull request #2 from davidssmith/grasp
      Merge pull request #5 from mikgroup/misc-updates
      typo in comment
      minor
      make operator interface independent from flpmath.h
      white space
      minor
      minor
      Merge pull request #7 from mikgroup/logging
      make option switch in mini_cmdline_bool configurable
      add nrmse tool
      be more explicit about no diagnostic use
      make cfl reader accept future headers
      clear out implicit rules
      add tool to print version information
      explain version string in help message
      handle white space
      fix infinite loop with parallel make
      scanf %m not supported by Mac OS X
      delete intermediate files
      twixread: fix missing initialization + other improvements
      typo
      fix fftmod performance regression
      re-activate parallelization for gram_matrix
      minor
      add some options or radial trajectories
      nmrse: add test option
      toimg: simplify and restore filename detection
      formatting
      avoid second dot in filename
      add generalized regularization options (based on Jon's work)
      l2 penalty by default
      update help
      update grasp.sh script

davidssmith (1):
      fixed grasp script to be more platform independent

uecker (2):
      add wave reconstruction
      linop_chainN

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