[med-svn] [emboss] 04/04: Final spelling fixes

[Andreas Tille]

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tille pushed a commit to branch master
in repository emboss.

commit 82e445b304212939d70453d289528c04c1f3fab4
Author: Andreas Tille <tille at debian.org>
Date:   Tue Dec 1 20:06:12 2015 +0100

    Final spelling fixes
---
 debian/control             | 2 +-
 debian/manpages/notseq.1e  | 2 +-
 debian/manpages/trimest.1e | 2 +-
 debian/manpages/twofeat.1e | 2 +-
 4 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/debian/control b/debian/control
index e5cf27a..005f19b 100644
--- a/debian/control
+++ b/debian/control
@@ -42,7 +42,7 @@ Suggests: emboss-doc,
           emboss-test,
           embassy,
           clustalw
-Description: european molecular biology open software suite
+Description: European molecular biology open software suite
  EMBOSS is a free Open Source software analysis package specially developed for
  the needs of the molecular biology (e.g. EMBnet) user community. The software
  automatically copes with data in a variety of formats and even allows
diff --git a/debian/manpages/notseq.1e b/debian/manpages/notseq.1e
index c466280..18463d7 100644
--- a/debian/manpages/notseq.1e
+++ b/debian/manpages/notseq.1e
@@ -48,7 +48,7 @@ is a command line program from EMBOSS (\(lqthe European Molecular Biology Open S
 .PP
 \fB\-exclude\fR \fIstring\fR
 .RS 4
-Enter a list of sequence names or accession numbers to exclude from the sequences read in\&. The excluded sequences will be written to the file specified in the \*(Aqjunkout\*(Aq parameter\&. The remainder will be written out to the file specified in the \*(Aqoutseq\*(Aq parameter\&. The list of sequence names can be separated by either spaces or commas\&. The sequence names can be wildcarded\&. The sequence names are case independent\&. An example of a list of sequences to be excluded i [...]
+Enter a list of sequence names or accession numbers to exclude from the sequences read in\&. The excluded sequences will be written to the file specified in the \*(Aqjunkout\*(Aq parameter\&. The remainder will be written out to the file specified in the \*(Aqoutseq\*(Aq parameter\&. The list of sequence names can be separated by either spaces or commas\&. The sequence names can be wildcarded\&. The sequence names are case independent\&. An example of a list of sequences to be excluded i [...]
 .RE
 .SS "Output section"
 .PP
diff --git a/debian/manpages/trimest.1e b/debian/manpages/trimest.1e
index a2ee29d..c608dac 100644
--- a/debian/manpages/trimest.1e
+++ b/debian/manpages/trimest.1e
@@ -53,7 +53,7 @@ This is the minimum length that a poly\-A (or poly\-T) tail must have before it
 .PP
 \fB\-mismatches\fR \fIinteger\fR
 .RS 4
-If there are this number or fewer contiguous non\-A bases in a poly\-A tail then, if there are \*(Aq\-minlength\*(Aq \*(AqA\*(Aq bases before them, they will be considered part of the tail and removed \&. For example the terminal 4 A\*(Aqs of GCAGAAAA would be removed with the default values of \-minlength=4 and \-mismatches=1 (There are not at least 4 A\*(Aqs before the last \*(AqG\*(Aq and so only the A\*(Aqs after it are considered to be part of the tail)\&. The terminal 9 bases of GC [...]
+If there are this number or fewer contiguous non\-A bases in a poly\-A tail then, if there are \*(Aq\-minlength\*(Aq \*(AqA\*(Aq bases before them, they will be considered part of the tail and removed \&. For example the terminal 4 A\*(Aqs of GCAGAAAA would be removed with the default values of \-minlength=4 and \-mismatches=1 (There are not at least 4 A\*(Aqs before the last \*(AqG\*(Aq and so only the A\*(Aqs after it are considered to be part of the tail)\&. The terminal 9 bases of GC [...]
 .RE
 .PP
 \fB\-reverse\fR \fIboolean\fR
diff --git a/debian/manpages/twofeat.1e b/debian/manpages/twofeat.1e
index 40d659c..e7e43a3 100644
--- a/debian/manpages/twofeat.1e
+++ b/debian/manpages/twofeat.1e
@@ -156,7 +156,7 @@ If you set this to be true, then the two features themselves will be written out
 .PP
 \fB\-typeout\fR \fIstring\fR
 .RS 4
-If you have specified that the pairs of features that are found should be reported as one feature in the ouput, then you can specify the \*(Aqtype\*(Aq name of the new feature here\&. By default every feature in the feature table is allowed\&. See http://www\&.ebi\&.ac\&.uk/embl/WebFeat/ for a list of the EMBL feature types and see Appendix A of the Swissprot user manual in http://www\&.expasy\&.org/sprot/userman\&.html for a list of the Swissprot feature types\&. If you specify an inval [...]
+If you have specified that the pairs of features that are found should be reported as one feature in the output, then you can specify the \*(Aqtype\*(Aq name of the new feature here\&. By default every feature in the feature table is allowed\&. See http://www\&.ebi\&.ac\&.uk/embl/WebFeat/ for a list of the EMBL feature types and see Appendix A of the Swissprot user manual in http://www\&.expasy\&.org/sprot/userman\&.html for a list of the Swissprot feature types\&. If you specify an inva [...]
 .RE
 .PP
 \fB\-outfile\fR \fIreport\fR

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