[med-svn] r20593 - in trunk/packages/aragorn/trunk/debian: . tests

Sascha Steinbiss sascha-guest at moszumanska.debian.org
Tue Dec 1 23:39:02 UTC 2015 

Author: sascha-guest
Date: 2015-12-01 23:39:02 +0000 (Tue, 01 Dec 2015)
New Revision: 20593

Added:
   trunk/packages/aragorn/trunk/debian/tests/
   trunk/packages/aragorn/trunk/debian/tests/control
   trunk/packages/aragorn/trunk/debian/tests/testseq.fasta
Modified:
   trunk/packages/aragorn/trunk/debian/changelog
   trunk/packages/aragorn/trunk/debian/control
   trunk/packages/aragorn/trunk/debian/rules
Log:
fix freeze, housekeeping


Modified: trunk/packages/aragorn/trunk/debian/changelog
===================================================================
--- trunk/packages/aragorn/trunk/debian/changelog	2015-12-01 21:28:33 UTC (rev 20592)
+++ trunk/packages/aragorn/trunk/debian/changelog	2015-12-01 23:39:02 UTC (rev 20593)
@@ -1,3 +1,11 @@
+aragorn (1.2.36-5) unstable; urgency=medium
+
+  * Fix freeze with -O2/3.
+  * Add simple autopkgtest.
+  * Bump standards version.
+
+ -- Sascha Steinbiss <sascha at steinbiss.name>  Tue, 01 Dec 2015 23:32:50 +0000
+
 aragorn (1.2.36-4) unstable; urgency=low
 
   * Fix hardening flags

Modified: trunk/packages/aragorn/trunk/debian/control
===================================================================
--- trunk/packages/aragorn/trunk/debian/control	2015-12-01 21:28:33 UTC (rev 20592)
+++ trunk/packages/aragorn/trunk/debian/control	2015-12-01 23:39:02 UTC (rev 20593)
@@ -4,7 +4,7 @@
 Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
 Uploaders: Sascha Steinbiss <sascha at steinbiss.name>
 Build-Depends: debhelper (>= 9)
-Standards-Version: 3.9.5
+Standards-Version: 3.9.6
 Homepage: http://mbio-serv2.mbioekol.lu.se/ARAGORN/
 Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/aragorn/trunk/
 Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/aragorn/trunk/

Modified: trunk/packages/aragorn/trunk/debian/rules
===================================================================
--- trunk/packages/aragorn/trunk/debian/rules	2015-12-01 21:28:33 UTC (rev 20592)
+++ trunk/packages/aragorn/trunk/debian/rules	2015-12-01 23:39:02 UTC (rev 20593)
@@ -13,10 +13,10 @@
 	dh $@
 
 override_dh_auto_clean:
-	rm -f aragorn 
+	rm -f aragorn
 
 override_dh_auto_build:
-	$(CC) $(CPPFLAGS) $(CFLAGS) $(LDFLAGS) -O3 -ffast-math -finline-functions -o aragorn *.c
+	$(CC) $(CPPFLAGS) $(CFLAGS) $(LDFLAGS) -Os -o aragorn *.c
 
 override_dh_auto_install:
 	mkdir -p $(DESTDIR)/usr/bin

Added: trunk/packages/aragorn/trunk/debian/tests/control
===================================================================
--- trunk/packages/aragorn/trunk/debian/tests/control	                        (rev 0)
+++ trunk/packages/aragorn/trunk/debian/tests/control	2015-12-01 23:39:02 UTC (rev 20593)
@@ -0,0 +1,3 @@
+Test-Command: aragorn debian/tests/testseq.fasta
+Depends: @
+

Added: trunk/packages/aragorn/trunk/debian/tests/testseq.fasta
===================================================================
--- trunk/packages/aragorn/trunk/debian/tests/testseq.fasta	                        (rev 0)
+++ trunk/packages/aragorn/trunk/debian/tests/testseq.fasta	2015-12-01 23:39:02 UTC (rev 20593)
@@ -0,0 +1,261 @@
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-Ile-GAT-1-1 (chr.trna1-IleGAT) chr:225381-225457 (+) Ile (GAT) 77 bp Sc: 80.6
+AGGCTTGTAGCTCAGGTGGTtAGAGCGCACCCCTGATAAGGGTGAGGtCGGTGGTTCAAG
+TCCACTCAGGCCTACCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-Lys-TTT-1-2 (chr.trna10-LysTTT) chr:780843-780918 (+) Lys (TTT) 76 bp Sc: 96.2
+GGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGtCGCAGGTTCGAAT
+CCTGCACGACCCACCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-Val-TAC-1-2 (chr.trna11-ValTAC) chr:781068-781143 (+) Val (TAC) 76 bp Sc: 86.6
+GGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGtCGGCGGTTCGATC
+CCGTCATCACCCACCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-Lys-TTT-1-3 (chr.trna12-LysTTT) chr:781147-781222 (+) Lys (TTT) 76 bp Sc: 96.2
+GGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGtCGCAGGTTCGAAT
+CCTGCACGACCCACCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-Lys-TTT-1-4 (chr.trna13-LysTTT) chr:781369-781444 (+) Lys (TTT) 76 bp Sc: 96.2
+GGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGtCGCAGGTTCGAAT
+CCTGCACGACCCACCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-Lys-TTT-1-5 (chr.trna14-LysTTT) chr:781577-781652 (+) Lys (TTT) 76 bp Sc: 96.2
+GGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGtCGCAGGTTCGAAT
+CCTGCACGACCCACCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-Val-GAC-2-1 (chr.trna15-ValGAC) chr:1746435-1746511 (+) Val (GAC) 77 bp Sc: 84.4
+GCGTTCATAGCTCAGTTGGTtAGAGCACCACCTTGACATGGTGGGGGtCGTTGGTTCGAG
+TCCAATTGAACGCACCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-Val-GAC-1-1 (chr.trna16-ValGAC) chr:1746516-1746592 (+) Val (GAC) 77 bp Sc: 88.6
+GCGTCCGTAGCTCAGTTGGTtAGAGCACCACCTTGACATGGTGGGGGtCGGTGGTTCGAG
+TCCACTCGGACGCACCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-Asn-GTT-1-1 (chr.trna17-AsnGTT) chr:2044549-2044624 (+) Asn (GTT) 76 bp Sc: 84.0
+TCCTCTGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGtCACTGGTTCGAGT
+CCAGTCAGAGGAGCCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-Asn-GTT-1-3 (chr.trna18-AsnGTT) chr:2059851-2059926 (+) Asn (GTT) 76 bp Sc: 84.0
+TCCTCTGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGtCACTGGTTCGAGT
+CCAGTCAGAGGAGCCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-Asn-GTT-1-4 (chr.trna19-AsnGTT) chr:2062260-2062335 (+) Asn (GTT) 76 bp Sc: 84.0
+TCCTCTGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGtCACTGGTTCGAGT
+CCAGTCAGAGGAGCCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-Ala-TGC-1-1 (chr.trna2-AlaTGC) chr:225500-225575 (+) Ala (TGC) 76 bp Sc: 82.0
+GGGGCTATAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGtCTGCGGTTCGATC
+CCGCATAGCTCCACCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-Pro-GGG-1-1 (chr.trna20-ProGGG) chr:2286211-2286287 (+) Pro (GGG) 77 bp Sc: 73.0
+CGGCACGTAGCGCAGCCtGGTAGCGCACCGTCATGGGGTGTCGGGGGtCGGAGGTTCAAA
+TCCTCTCGTGCCGACCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-Arg-CCT-1-1 (chr.trna21-ArgCCT) chr:2466309-2466383 (+) Arg (CCT) 75 bp Sc: 63.9
+GTCCTCTTAGTTAAATGGAtATAACGAGCCCCTCCTAAGGGCTAATTGCAGGTTCGATTC
+CTGCAGGGGACACCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-Val-TAC-1-3 (chr.trna22-ValTAC) chr:2520931-2521006 (+) Val (TAC) 76 bp Sc: 86.6
+GGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGtCGGCGGTTCGATC
+CCGTCATCACCCACCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-Val-TAC-1-4 (chr.trna23-ValTAC) chr:2521051-2521126 (+) Val (TAC) 76 bp Sc: 86.6
+GGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGtCGGCGGTTCGATC
+CCGTCATCACCCACCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-Val-TAC-1-5 (chr.trna24-ValTAC) chr:2521173-2521248 (+) Val (TAC) 76 bp Sc: 86.6
+GGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGtCGGCGGTTCGATC
+CCGTCATCACCCACCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-Lys-TTT-1-6 (chr.trna25-LysTTT) chr:2521253-2521328 (+) Lys (TTT) 76 bp Sc: 96.2
+GGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGtCGCAGGTTCGAAT
+CCTGCACGACCCACCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-fMet-CAT-1-1 (chr.trna26-MetCAT) chr:2947387-2947463 (+) Met (CAT) 77 bp Sc: 81.4
+CGCGGGGTGGAGCAGCCtGGTAGCTCGTCGGGCTCATAACCCGAAGGtCGTCGGTTCAAA
+TCCGGCCCCCGCAACCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-fMet-CAT-1-2 (chr.trna27-MetCAT) chr:2947497-2947573 (+) Met (CAT) 77 bp Sc: 81.4
+CGCGGGGTGGAGCAGCCtGGTAGCTCGTCGGGCTCATAACCCGAAGGtCGTCGGTTCAAA
+TCCGGCCCCCGCAACCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-fMet-CAT-1-3 (chr.trna28-MetCAT) chr:2947607-2947683 (+) Met (CAT) 77 bp Sc: 81.4
+CGCGGGGTGGAGCAGCCtGGTAGCTCGTCGGGCTCATAACCCGAAGGtCGTCGGTTCAAA
+TCCGGCCCCCGCAACCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-Phe-GAA-1-1 (chr.trna29-PheGAA) chr:3110366-3110441 (+) Phe (GAA) 76 bp Sc: 80.6
+GCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGtCCTTGGTTCGATT
+CCGAGTCCGGGCACCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-Asp-GTC-1-1 (chr.trna3-AspGTC) chr:228928-229004 (+) Asp (GTC) 77 bp Sc: 86.7
+GGAGCGGTAGTTCAGTCGGTtAGAATACCTGCCTGTCACGCAGGGGGtCGCGGGTTCGAG
+TCCCGTCCGTTCCGCCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-Met-CAT-3-1 (chr.trna30-MetCAT) chr:3215598-3215673 (+) Met (CAT) 76 bp Sc: 89.1
+GGCCCCTTAGCTCAGTGGTtAGAGCAGGCGACTCATAATCGCTTGGtCGCTGGTTCAAGT
+CCAGCAGGGGCCACCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-SeC-TCA-1-1 (chr.trna31-SeCTCA) chr:3836222-3836324 (+) SeC (TCA) 91 bp Sc: 142.9
+GGAAGATCGTCGTCTCCGGTGAGGCGGCTGGACTTCAAATCCAGTTGGGGCCGCCAGCGG
+TCCCGGGCAGGTTCGACTCCTGTGATCTTCC
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-Glu-TTC-1-2 (chr.trna32-GluTTC) chr:3943435-3943510 (+) Glu (TTC) 76 bp Sc: 70.5
+GTCCCCTTCGTCTAGAGGCccAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAAT
+CCCCTAGGGGACGCCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-Asp-GTC-1-3 (chr.trna33-AspGTC) chr:3946872-3946948 (+) Asp (GTC) 77 bp Sc: 86.7
+GGAGCGGTAGTTCAGTCGGTtAGAATACCTGCCTGTCACGCAGGGGGtCGCGGGTTCGAG
+TCCCGTCCGTTCCGCCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-Trp-CCA-1-1 (chr.trna34-TrpCCA) chr:3946957-3947032 (+) Trp (CCA) 76 bp Sc: 80.3
+AGGGGCGTAGTTCAATTGGTAGAGCACCGGTCTCCAAAACCGGGTGtTGGGAGTTCGAGT
+CTCTCCGCCCCTGCCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-Arg-CCG-1-1 (chr.trna35-ArgCCG) chr:3982375-3982451 (+) Arg (CCG) 77 bp Sc: 84.1
+GCGCCCGTAGCTCAGCTGGAtAGAGCGCTGCCCTCCGGAGGCAGAGGtCTCAGGTTCGAA
+TCCTGTCGGGCGCGCCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-His-GTG-1-1 (chr.trna36-HisGTG) chr:3982510-3982585 (+) His (GTG) 76 bp Sc: 82.3
+GTGGCTATAGCTCAGTTGGTAGAGCCCTGGATTGTGATTCCAGTTGtCGTGGGTTCGAAT
+CCCATTAGCCACCCCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-Leu-CAG-1-1 (chr.trna37-LeuCAG) chr:3982606-3982692 (+) Leu (CAG) 87 bp Sc: 74.2
+GCGAAGGTGGCGGAATTGGTaGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTG
+GGGGTTCAAGTCCCCCCCCTCGCACCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-Pro-TGG-1-1 (chr.trna38-ProTGG) chr:3982735-3982811 (+) Pro (TGG) 77 bp Sc: 85.9
+CGGCGAGTAGCGCAGCTtGGTAGCGCAACTGGTTTGGGACCAGTGGGtCGGAGGTTCGAA
+TCCTCTCTCGCCGACCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-Ile-GAT-1-3 (chr.trna39-IleGAT) chr:4037141-4037217 (+) Ile (GAT) 77 bp Sc: 80.6
+AGGCTTGTAGCTCAGGTGGTtAGAGCGCACCCCTGATAAGGGTGAGGtCGGTGGTTCAAG
+TCCACTCAGGCCTACCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-Asp-GTC-1-2 (chr.trna4-AspGTC) chr:236931-237007 (+) Asp (GTC) 77 bp Sc: 86.7
+GGAGCGGTAGTTCAGTCGGTtAGAATACCTGCCTGTCACGCAGGGGGtCGCGGGTTCGAG
+TCCCGTCCGTTCCGCCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-Ala-TGC-1-3 (chr.trna40-AlaTGC) chr:4037260-4037335 (+) Ala (TGC) 76 bp Sc: 82.0
+GGGGCTATAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGtCTGCGGTTCGATC
+CCGCATAGCTCCACCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-Glu-TTC-1-3 (chr.trna41-GluTTC) chr:4168372-4168447 (+) Glu (TTC) 76 bp Sc: 70.5
+GTCCCCTTCGTCTAGAGGCccAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAAT
+CCCCTAGGGGACGCCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-Thr-TGT-1-1 (chr.trna42-ThrTGT) chr:4175388-4175463 (+) Thr (TGT) 76 bp Sc: 84.6
+GCCGACTTAGCTCAGTAGGTAGAGCAACTGACTTGTAATCAGTAGGtCACCAGTTCGATT
+CCGGTAGTCGGCACCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-Tyr-GTA-1-1 (chr.trna43-TyrGTA) chr:4175472-4175556 (+) Tyr (GTA) 85 bp Sc: 77.9
+GGTGGGGTTCCCGAGCGGCcaAAGGGAGCAGACTGTAAATCTGCCGTCACAGACTtCGAA
+GGTTCGAATCCTTCCCCCACCACCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-Gly-TCC-1-1 (chr.trna44-GlyTCC) chr:4175673-4175747 (+) Gly (TCC) 75 bp Sc: 70.3
+GCGGGCATCGTATAATGGCtATTACCTCAGCCTTCCAAGCTGATGaTGCGGGTTCGATTC
+CCGCTGCCCGCTCCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-Thr-GGT-1-1 (chr.trna45-ThrGGT) chr:4175754-4175829 (+) Thr (GGT) 76 bp Sc: 90.2
+GCTGATATAGCTCAGTTGGTAGAGCGCACCCTTGGTAAGGGTGAGGtCGGCAGTTCGAAT
+CTGCCTATCAGCACCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-Glu-TTC-1-4 (chr.trna46-GluTTC) chr:4209774-4209849 (+) Glu (TTC) 76 bp Sc: 70.5
+GTCCCCTTCGTCTAGAGGCccAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAAT
+CCCCTAGGGGACGCCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-Gly-GCC-1-2 (chr.trna47-GlyGCC) chr:4392360-4392435 (+) Gly (GCC) 76 bp Sc: 89.1
+GCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGtCGCGAGTTCGAGT
+CTCGTTTCCCGCTCCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-Gly-GCC-1-3 (chr.trna48-GlyGCC) chr:4392472-4392547 (+) Gly (GCC) 76 bp Sc: 89.1
+GCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGtCGCGAGTTCGAGT
+CTCGTTTCCCGCTCCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-Gly-GCC-1-4 (chr.trna49-GlyGCC) chr:4392583-4392658 (+) Gly (GCC) 76 bp Sc: 89.1
+GCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGtCGCGAGTTCGAGT
+CTCGTTTCCCGCTCCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-Thr-CGT-1-1 (chr.trna5-ThrCGT) chr:262871-262946 (+) Thr (CGT) 76 bp Sc: 87.8
+GCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGtCGTAGGTTCGACT
+CCTATTATCGGCACCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-Leu-CAA-1-1 (chr.trna50-LeuCAA) chr:4496405-4496489 (+) Leu (CAA) 85 bp Sc: 85.2
+GCCGAAGTGGCGAAATCGGTaGACGCAGTTGATTCAAAATCAACCGTAGAAATACGTGCC
+GGTTCGAGTCCGGCCTTCGGCACCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-Leu-CAG-1-3 (chr.trna51-LeuCAG) chr:4606315-4606401 (-) Leu (CAG) 87 bp Sc: 74.2
+GCGAAGGTGGCGGAATTGGTaGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTG
+GGGGTTCAAGTCCCCCCCCTCGCACCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-Leu-CAG-2-1 (chr.trna52-LeuCAG) chr:4606200-4606286 (-) Leu (CAG) 87 bp Sc: 71.3
+GCGAAGGTGGCGGAATTGGTaGACGCGCTAGCTTCAGGTGTTAGTGTTCTTACGGACGTG
+GGGGTTCAAGTCCCCCCCCTCGCACCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-Leu-CAG-1-2 (chr.trna53-LeuCAG) chr:4606079-4606165 (-) Leu (CAG) 87 bp Sc: 74.2
+GCGAAGGTGGCGGAATTGGTaGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTG
+GGGGTTCAAGTCCCCCCCCTCGCACCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-Phe-GAA-1-2 (chr.trna54-PheGAA) chr:4362551-4362626 (-) Phe (GAA) 76 bp Sc: 80.6
+GCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGtCCTTGGTTCGATT
+CCGAGTCCGGGCACCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-Pro-CGG-1-1 (chr.trna55-ProCGG) chr:3708616-3708692 (-) Pro (CGG) 77 bp Sc: 79.4
+CGGTGATTGGCGCAGCCtGGTAGCGCACTTCGTTCGGGACGAAGGGGtCGGAGGTTCGAA
+TCCTCTATCACCGACCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-Ile-GAT-1-2 (chr.trna56-IleGAT) chr:3427076-3427152 (-) Ile (GAT) 77 bp Sc: 80.6
+AGGCTTGTAGCTCAGGTGGTtAGAGCGCACCCCTGATAAGGGTGAGGtCGGTGGTTCAAG
+TCCACTCAGGCCTACCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-Ala-TGC-1-2 (chr.trna57-AlaTGC) chr:3426958-3427033 (-) Ala (TGC) 76 bp Sc: 82.0
+GGGGCTATAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGtCTGCGGTTCGATC
+CCGCATAGCTCCACCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-Thr-GGT-2-1 (chr.trna58-ThrGGT) chr:3423580-3423655 (-) Thr (GGT) 76 bp Sc: 86.1
+GCTGATATGGCTCAGTTGGTAGAGCGCACCCTTGGTAAGGGTGAGGtCCCCAGTTCGACT
+CTGGGTATCAGCACCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-Leu-GAG-1-1 (chr.trna59-LeuGAG) chr:3322072-3322158 (-) Leu (GAG) 87 bp Sc: 73.9
+GCCGAGGTGGTGGAATTGGTaGACACGCTACCTTGAGGTGGTAGTGCCCAATAGGGCTTA
+CGGGTTCAAGTCCCGTCCTCGGTACCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-Thr-CGT-2-1 (chr.trna6-ThrCGT) chr:297178-297254 (+) Thr (CGT) 77 bp Sc: 33.3
+GCTCAAGTAGTTAAAAATGCaTTAACATCGCATTCGTAATGCGAAGGtCGTAGGTTCGAC
+TCCTATTATCGGCACCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-fMet-CAT-2-1 (chr.trna60-MetCAT) chr:3318213-3318289 (-) Met (CAT) 77 bp Sc: 79.0
+CGCGGGGTGGAGCAGCCtGGTAGCTCGTCGGGCTCATAACCCGAAGAtCGTCGGTTCAAA
+TCCGGCCCCCGCAACCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-Gly-CCC-1-1 (chr.trna61-GlyCCC) chr:2998984-2999057 (-) Gly (CCC) 74 bp Sc: 80.0
+GCGGGCGTAGTTCAATGGTAGAACGAGAGCTTCCCAAGCTCTATaCGAGGGTTCGATTCC
+CTTCGCCCGCTCCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-Ser-GCT-1-1 (chr.trna62-SerGCT) chr:2818553-2818645 (-) Ser (GCT) 93 bp Sc: 88.4
+GGTGAGGTGGCCGAGAGGCtgAAGGCGCTCCCCTGCTAAGGGAGTATGCGGTCAAAaGCT
+GCATCCGGGGTTCGAATCCCCGCCTCACCGCCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-Arg-ACG-1-4 (chr.trna63-ArgACG) chr:2818473-2818549 (-) Arg (ACG) 77 bp Sc: 81.6
+GCATCCGTAGCTCAGCTGGAtAGAGTACTCGGCTACGAACCGAGCGGtCGGAGGTTCGAA
+TCCTCCCGGATGCACCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-Arg-ACG-1-3 (chr.trna64-ArgACG) chr:2818198-2818274 (-) Arg (ACG) 77 bp Sc: 81.6
+GCATCCGTAGCTCAGCTGGAtAGAGTACTCGGCTACGAACCGAGCGGtCGGAGGTTCGAA
+TCCTCCCGGATGCACCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-Arg-ACG-1-2 (chr.trna65-ArgACG) chr:2818059-2818135 (-) Arg (ACG) 77 bp Sc: 81.6
+GCATCCGTAGCTCAGCTGGAtAGAGTACTCGGCTACGAACCGAGCGGtCGGAGGTTCGAA
+TCCTCCCGGATGCACCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-Arg-ACG-1-1 (chr.trna66-ArgACG) chr:2817784-2817860 (-) Arg (ACG) 77 bp Sc: 81.6
+GCATCCGTAGCTCAGCTGGAtAGAGTACTCGGCTACGAACCGAGCGGtCGGAGGTTCGAA
+TCCTCCCGGATGCACCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-Met-CAT-1-1 (chr.trna67-MetCAT) chr:2785762-2785837 (-) Met (CAT) 76 bp Sc: 89.6
+GGCCCTTTAGCTCAGTGGTtAGAGCAGGCGACTCATAATCGCTTGGtCGCTGGTTCAAGT
+CCAGCAAGGGCCACCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-Glu-TTC-1-1 (chr.trna68-GluTTC) chr:2729369-2729444 (-) Glu (TTC) 76 bp Sc: 70.5
+GTCCCCTTCGTCTAGAGGCccAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAAT
+CCCCTAGGGGACGCCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-Ala-GGC-1-2 (chr.trna69-AlaGGC) chr:2518156-2518231 (-) Ala (GGC) 76 bp Sc: 79.4
+GGGGCTATAGCTCAGCTGGGAGAGCGCTTGCATGGCATGCAAGAGGtCAGCGGTTCGATC
+CCGCTTAGCTCCACCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-Arg-TCT-1-1 (chr.trna7-ArgTCT) chr:564723-564799 (+) Arg (TCT) 77 bp Sc: 89.3
+GCGCCCTTAGCTCAGTTGGAtAGAGCAACGACCTTCTAAGTCGTGGGcCGCAGGTTCGAA
+TCCTGCAGGGCGCGCCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-Ala-GGC-1-1 (chr.trna70-AlaGGC) chr:2518041-2518116 (-) Ala (GGC) 76 bp Sc: 79.4
+GGGGCTATAGCTCAGCTGGGAGAGCGCTTGCATGGCATGCAAGAGGtCAGCGGTTCGATC
+CCGCTTAGCTCCACCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-Asn-GTT-1-2 (chr.trna71-AsnGTT) chr:2058027-2058102 (-) Asn (GTT) 76 bp Sc: 84.0
+TCCTCTGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGtCACTGGTTCGAGT
+CCAGTCAGAGGAGCCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-Ser-CGA-1-1 (chr.trna72-SerCGA) chr:2043468-2043557 (-) Ser (CGA) 90 bp Sc: 92.0
+GGAGAGATGCCGGAGCGGCtgAACGGACCGGTCTCGAAAACCGGAGTAGGGGCAACTCTA
+CCGGGGGTTCAAATCCCCCTCTCTCCGCCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-Gly-GCC-1-1 (chr.trna73-GlyGCC) chr:1992042-1992117 (-) Gly (GCC) 76 bp Sc: 89.1
+GCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGtCGCGAGTTCGAGT
+CTCGTTTCCCGCTCCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-Cys-GCA-1-1 (chr.trna74-CysGCA) chr:1991914-1991987 (-) Cys (GCA) 74 bp Sc: 64.0
+GGCGCGTTAACAAAGCGGTTATGTAGCGGATTGCAAATCCGTCTaGTCCGGTTCGACTCC
+GGAACGCGCCTCCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-Leu-TAA-1-1 (chr.trna75-LeuTAA) chr:1991815-1991901 (-) Leu (TAA) 87 bp Sc: 81.8
+GCCCGGATGGTGGAATCGGTaGACACAAGGGATTTAAAATCCCTCGGCGTTCGCGCTGTG
+CGGGTTCAAGTCCCGCTCCGGGTACCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-Tyr-GTA-2-2 (chr.trna76-TyrGTA) chr:1287538-1287622 (-) Tyr (GTA) 85 bp Sc: 77.5
+GGTGGGGTTCCCGAGCGGCcaAAGGGAGCAGACTGTAAATCTGCCGTCATCGACTtCGAA
+GGTTCGAATCCTTCCCCCACCACCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-Tyr-GTA-2-1 (chr.trna77-TyrGTA) chr:1287244-1287328 (-) Tyr (GTA) 85 bp Sc: 77.5
+GGTGGGGTTCCCGAGCGGCcaAAGGGAGCAGACTGTAAATCTGCCGTCATCGACTtCGAA
+GGTTCGAATCCTTCCCCCACCACCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-Ser-GGA-1-2 (chr.trna78-SerGGA) chr:1097565-1097652 (-) Ser (GGA) 88 bp Sc: 83.0
+GGTGAGGTGTCCGAGTGGCtgAAGGAGCACGCCTGGAAAGTGTGTATACGGCAACGTATC
+GGGGGTTCGAATCCCCCCCTCACCGCCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-Ser-TGA-1-1 (chr.trna79-SerTGA) chr:1031625-1031712 (-) Ser (TGA) 88 bp Sc: 87.0
+GGAAGTGTGGCCGAGCGGTtgAAGGCACCGGTCTTGAAAACCGGCGACCCGAAAGGGTTC
+CAGAGTTCGAATCTCTGCGCTTCCGCCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-Lys-TTT-1-1 (chr.trna8-LysTTT) chr:780554-780629 (+) Lys (TTT) 76 bp Sc: 96.2
+GGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGtCGCAGGTTCGAAT
+CCTGCACGACCCACCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-Ser-GGA-1-1 (chr.trna80-SerGGA) chr:925884-925971 (-) Ser (GGA) 88 bp Sc: 83.0
+GGTGAGGTGTCCGAGTGGCtgAAGGAGCACGCCTGGAAAGTGTGTATACGGCAACGTATC
+GGGGGTTCGAATCCCCCCCTCACCGCCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-Met-CAT-2-2 (chr.trna81-MetCAT) chr:697057-697133 (-) Met (CAT) 77 bp Sc: 89.1
+GGCTACGTAGCTCAGTTGGTtAGAGCACATCACTCATAATGATGGGGtCACAGGTTCGAA
+TCCCGTCGTAGCCACCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-Leu-TAG-1-1 (chr.trna82-LeuTAG) chr:696963-697047 (-) Leu (TAG) 85 bp Sc: 82.3
+GCGGGAGTGGCGAAATTGGTaGACGCACCAGATTTAGGTTCTGGCGCCGCAAGGTGTGCG
+AGTTCAAGTCTCGCCTCCCGCACCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-Gln-TTG-1-2 (chr.trna83-GlnTTG) chr:696865-696939 (-) Gln (TTG) 75 bp Sc: 76.3
+TGGGGTATCGCCAAGCGGTAAGGCACCGGTTTTTGATACCGGCATtCCCTGGTTCGAATC
+CAGGTACCCCAGCCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-Gln-TTG-1-1 (chr.trna84-GlnTTG) chr:696756-696830 (-) Gln (TTG) 75 bp Sc: 76.3
+TGGGGTATCGCCAAGCGGTAAGGCACCGGTTTTTGATACCGGCATtCCCTGGTTCGAATC
+CAGGTACCCCAGCCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-Met-CAT-2-1 (chr.trna85-MetCAT) chr:696664-696740 (-) Met (CAT) 77 bp Sc: 89.1
+GGCTACGTAGCTCAGTTGGTtAGAGCACATCACTCATAATGATGGGGtCACAGGTTCGAA
+TCCCGTCGTAGCCACCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-Gln-CTG-1-2 (chr.trna86-GlnCTG) chr:696542-696616 (-) Gln (CTG) 75 bp Sc: 77.7
+TGGGGTATCGCCAAGCGGTAAGGCACCGGATTCTGATTCCGGCATtCCGAGGTTCGAATC
+CTCGTACCCCAGCCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-Gln-CTG-1-1 (chr.trna87-GlnCTG) chr:696430-696504 (-) Gln (CTG) 75 bp Sc: 77.7
+TGGGGTATCGCCAAGCGGTAAGGCACCGGATTCTGATTCCGGCATtCCGAGGTTCGAATC
+CTCGTACCCCAGCCA
+>Escherichia_coli_str_K-12_substr_MG1655_tRNA-Val-TAC-1-1 (chr.trna9-ValTAC) chr:780765-780840 (+) Val (TAC) 76 bp Sc: 86.6
+GGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGtCGGCGGTTCGATC
+CCGTCATCACCCACCA

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