[med-svn] [ea-utils] 02/02: Make sure the internal tools will call the renamed binary

[Andreas Tille]

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tille pushed a commit to branch master
in repository ea-utils.

commit 8b771e383953e88ca2bffcb22e9f21fb5bd68ea8
Author: Andreas Tille <tille at debian.org>
Date:   Thu Dec 3 15:31:38 2015 +0100

    Make sure the internal tools will call the renamed binary
---
 debian/changelog                         |  1 +
 debian/patches/name-space-conflict.patch | 16 ++++++++++++++++
 debian/patches/series                    |  1 +
 3 files changed, 18 insertions(+)

diff --git a/debian/changelog b/debian/changelog
index e1b8eb0..8ca9403 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,6 +1,7 @@
 ea-utils (1.1.2+dfsg-2) UNRELEASED; urgency=medium
 
   * Move /usr/bin/alc to /usr/lib/debian-med/bin/alc
+    Closes: #794334
 
  -- Andreas Tille <tille at debian.org>  Thu, 03 Dec 2015 15:15:42 +0100
 
diff --git a/debian/patches/name-space-conflict.patch b/debian/patches/name-space-conflict.patch
new file mode 100644
index 0000000..68af57f
--- /dev/null
+++ b/debian/patches/name-space-conflict.patch
@@ -0,0 +1,16 @@
+Author: Andreas Tille <tille at debian.org>
+Last-Update: Thu, 03 Dec 2015 15:15:42 +0100
+Bug-Debian: https://bugs.debian.org/794334
+Description: Make sure the renamed binary will be called
+
+--- a/randomFQ
++++ b/randomFQ
+@@ -84,7 +84,7 @@ if ($mate) {
+ 	}
+ }
+ 
+-my $lc = 0+`alc -o $in`;
++my $lc = 0+`ea-alc -o $in`;
+ my $stats = $in; $stats =~ s/\.gz$//;  $stats .= ".stats";
+ if (-e $stats) {
+ 	my $rlc = `grep ^reads $stats | cut -f 2`+0;
diff --git a/debian/patches/series b/debian/patches/series
index 0ccdd2a..d34de28 100644
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -1,2 +1,3 @@
 makefile.patch
 hardening.patch
+name-space-conflict.patch

-- 
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