[med-svn] [ariba] 03/06: flesh out first package

[Sascha Steinbiss]

This is an automated email from the git hooks/post-receive script.

sascha-guest pushed a commit to branch master
in repository ariba.

commit afa737f1c23c933751dc63be04fc166bcf973e1e
Author: Sascha Steinbiss <sascha at steinbiss.name>
Date:   Sat Dec 5 08:29:01 2015 +0000

    flesh out first package
---
 debian/changelog |  4 ++--
 debian/control   | 12 +++++++-----
 debian/copyright | 29 +++++++++++++++++++++++++++++
 debian/rules     |  5 ++---
 debian/watch     |  3 +++
 5 files changed, 43 insertions(+), 10 deletions(-)

diff --git a/debian/changelog b/debian/changelog
index 7a755f6..58f9abd 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,5 +1,5 @@
 ariba (0.6.0-1) unstable; urgency=low
 
-  * source package automatically created by stdeb 0.8.2
+  * Initial packaging (Closes: #12345678904)
 
- -- Martin Hunt <path-help at sanger.ac.uk>  Sat, 05 Dec 2015 07:44:21 +0000
+ -- Sascha Steinbiss <sascha at steinbiss.name>  Sat, 05 Dec 2015 07:44:21 +0000
diff --git a/debian/control b/debian/control
index e9a20df..e5a8354 100644
--- a/debian/control
+++ b/debian/control
@@ -3,9 +3,10 @@ Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.
 Uploaders: Sascha Steinbiss <sascha at steinbiss.name>
 Section: science
 Priority: optional
-X-Python3-Version: >= 3.4.2
 Testsuite: autopkgtest
-Build-Depends: debhelper (>= 9), python3, python3-setuptools
+Build-Depends: debhelper (>= 9), python3, python3-setuptools, python3-pymummer,
+               python3-pysam, python3-openpyxl, fastaq (>= 3.10.0),
+               python3-nose,  python3-lxml
 Standards-Version: 3.9.6
 Homepage: https://github.com/sanger-pathogens/ariba
 Vcs-Git: git://anonscm.debian.org/debian-med/ariba.git
@@ -14,13 +15,14 @@ Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/ariba.git
 Package: ariba
 Architecture: all
 Depends: ${misc:Depends}, ${python3:Depends}, bowtie2 (>= 2.1.0),
-         cd-hit (>= 4.6), samtools (>= 1.2), bcftools (>= 1.2),
-         mummer (>= 3.23), velvet (>= 1.2.07)
+         cd-hit (>= 4.6), samtools (>= 1.2),
+         mummer, velvet (>= 1.2.07), python3-pymummer, python3-pysam,
+         python3-openpyxl, fastaq (>= 3.10.0), python3-lxml
 Description: Antibiotic Resistance Identification By Assembly
  ARIBA is a tool that identifies antibiotic resistance genes by running local
  assemblies.
  The input is a FASTA file of reference genes and paired sequencing reads. ARIBA
  reports which of the reference genes were found, plus detailed information on
  the quality of the assemblies and any variants between the sequencing reads
- and the reference genes.
+ and the reference genes. bcftools (>= 1.2),
 
diff --git a/debian/copyright b/debian/copyright
new file mode 100644
index 0000000..7d86de7
--- /dev/null
+++ b/debian/copyright
@@ -0,0 +1,29 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: ariba
+Source: https://github.com/sanger-pathogens/ariba
+
+Files: *
+Copyright: © 2014-2015 Martin Hunt <mh12 at sanger.ac.uk>
+License: GPL-3+
+
+Files: debian/*
+Copyright: © 2015 Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+License: GPL-3+
+
+License: GPL-3+
+ This package is free software; you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation; either version 3 of the License, or
+ (at your option) any later version.
+ .
+ This package is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ GNU General Public License for more details.
+ .
+ You should have received a copy of the GNU General Public License
+ along with this program. If not, see <http://www.gnu.org/licenses/>
+ .
+ On Debian systems, the complete text of the GNU General
+ Public License version 3 can be found in "/usr/share/common-licenses/GPL-3".
+
diff --git a/debian/rules b/debian/rules
index 55e66bd..04fc69b 100755
--- a/debian/rules
+++ b/debian/rules
@@ -1,8 +1,7 @@
 #!/usr/bin/make -f
 
-# This file was automatically generated by stdeb 0.8.2 at
-# Sat, 05 Dec 2015 07:44:21 +0000
 export PYBUILD_NAME=ariba
+
 %:
-	dh $@ --with python2 --buildsystem=pybuild
+	dh $@ --with python3 --buildsystem=pybuild
 
diff --git a/debian/watch b/debian/watch
new file mode 100644
index 0000000..fbb491d
--- /dev/null
+++ b/debian/watch
@@ -0,0 +1,3 @@
+version=3
+https://github.com/sanger-pathogens/ariba/releases .*/archive/v(\d[\d.-]+)\.(?:tar(?:\.gz|\.bz2)?|tgz)
+

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/ariba.git