[med-svn] [ariba] 05/06: fix spelling

[Sascha Steinbiss]

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sascha-guest pushed a commit to branch master
in repository ariba.

commit 9ef44d9c06a8d068ef99b344c806f94e22a5f539
Author: Sascha Steinbiss <sascha at steinbiss.name>
Date:   Sat Dec 5 10:55:36 2015 +0000

    fix spelling
---
 debian/patches/series   |  1 +
 debian/patches/spelling | 12 ++++++++++++
 2 files changed, 13 insertions(+)

diff --git a/debian/patches/series b/debian/patches/series
new file mode 100644
index 0000000..e057d52
--- /dev/null
+++ b/debian/patches/series
@@ -0,0 +1 @@
+spelling
diff --git a/debian/patches/spelling b/debian/patches/spelling
new file mode 100644
index 0000000..3ed170a
--- /dev/null
+++ b/debian/patches/spelling
@@ -0,0 +1,12 @@
+Description: Spelling
+--- a/ariba/tasks/summary.py
++++ b/ariba/tasks/summary.py
+@@ -8,7 +8,7 @@
+         epilog = 'Files must be listed after the output file and/or the option --fofn must be used. If both used, all files in the filename specified by --fofn AND the files listed after the output file will be used as input. The input report files must be in tsv format, not xls.')
+     parser.add_argument('-f', '--fofn', help='File of filenames of ariba reports in tsv format (not xls) to be summarised. Must be used if no input files listed after the outfile.', metavar='FILENAME')
+     parser.add_argument('--min_id', type=float, help='Minimum percent identity cutoff to count as assembled [%(default)s]', default=90, metavar='FLOAT')
+-    parser.add_argument('--no_filter', action='store_true', help='Do not filter rows or columns of output that are all 0 (by deafult, they are removed from the output)')
++    parser.add_argument('--no_filter', action='store_true', help='Do not filter rows or columns of output that are all 0 (by default, they are removed from the output)')
+     parser.add_argument('outfile', help='Name of output file. If file ends with ".xls", then an excel spreadsheet is written. Otherwise a tsv file is written')
+     parser.add_argument('infiles', nargs='*', help='Files to be summarised')
+     options = parser.parse_args()

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